Information for motif21


Reverse Opposite:

p-value:1e-30
log p-value:-6.976e+01
Information Content per bp:1.621
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.20%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets51.4 +/- 25.6bp
Average Position of motif in Background26.3 +/- 2.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-TGTCATGGCAAC-
TTGCCATGGCAACC

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TGTCATGGCAAC-
TTGCCATGGCAACN

MA0600.1_RFX2/Jaspar

Match Rank:3
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--TGTCATGGCAAC-----
GTTGCCATGGCAACCGCGG

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---TGTCATGGCAAC
KGTTGCCATGGCAAC

MA0509.1_Rfx1/Jaspar

Match Rank:5
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--TGTCATGGCAAC
GTTGCCATGGCAAC

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TGTCATGGCAAC--
GTTGCCATGGCAACCG

MA0510.1_RFX5/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGTCATGGCAAC---
CTCCCTGGCAACAGC

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGTCATGGCAAC--
--SCCTAGCAACAG

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGTCATGGCAAC---
TACCATAGCAACGGT

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGTCATGGCAAC---
CCGCATAGCAACGGA