Information for motif23


Reverse Opposite:

p-value:1e-29
log p-value:-6.829e+01
Information Content per bp:1.619
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif4.02%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets49.9 +/- 26.2bp
Average Position of motif in Background46.7 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGACACTAGAGA---
ATAACCACTTGAAAATT

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------AGACACTAGAGA
CAAATCCAGACATCACA--

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGACACTAGAGA
AGAAACGAAAGT

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGACACTAGAGA--
TAAGCCACTTGAAATT

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGACACTAGAGA--
TAAGCCACTTGAAATT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGACACTAGAGA
BCAGACWA------

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGACACTAGAGA
CCAGACAG------

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGACACTAGAGA
CTCACACAATGGCGC

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AGACACTAGAGA
CCAGACRSVB----

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGACACTAGAGA--
TAAGCCACTTAACATT