Information for motif26


Reverse Opposite:

p-value:1e-27
log p-value:-6.277e+01
Information Content per bp:1.534
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif4.48%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets42.9 +/- 25.2bp
Average Position of motif in Background58.5 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:DGGKDNTTTYCA
NGGGGATTTCCC

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:DGGKDNTTTYCA
-GGGGATTTCC-

MA0105.3_NFKB1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:DGGKDNTTTYCA
-GGGAATTTCCC

MA0101.1_REL/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:DGGKDNTTTYCA
-GGGGATTTCC-

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:DGGKDNTTTYCA
-GGGAATTTCC-

MA0107.1_RELA/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:DGGKDNTTTYCA
-GGGAATTTCC-

MA0152.1_NFATC2/Jaspar

Match Rank:7
Score:0.64
Offset:5
Orientation:forward strand
Alignment:DGGKDNTTTYCA
-----TTTTCCA

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:8
Score:0.64
Offset:4
Orientation:forward strand
Alignment:DGGKDNTTTYCA--
----ATTTTCCATT

NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:DGGKDNTTTYCA-
-GGGGATTCCCCC

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:DGGKDNTTTYCA--
----GCATTCCAGN