Information for motif27


Reverse Opposite:

p-value:1e-24
log p-value:-5.568e+01
Information Content per bp:1.710
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif2.74%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets61.3 +/- 26.2bp
Average Position of motif in Background74.3 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGAGCCAGTCAT
ACTAGCCAATCA-

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGAGCCAGTCAT----
CAAATCCAGACATCACA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGAGCCAGTCAT
-ATGCCAGACN-

PB0195.1_Zbtb3_2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGAGCCAGTCAT--
NNNNTGCCAGTGATTG

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGAGCCAGTCAT
AGGTGHCAGACA-

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:6
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:AGAGCCAGTCAT-
-------GTCATN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGAGCCAGTCAT
----CCAGACAG

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGAGCCAGTCAT-
--AGCCACTCAAG

MA0161.1_NFIC/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGAGCCAGTCAT
--TGCCAA----

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGAGCCAGTCAT
--AGCCAATCGG