Information for motif28


Reverse Opposite:

p-value:1e-22
log p-value:-5.236e+01
Information Content per bp:1.679
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif4.02%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets53.0 +/- 27.6bp
Average Position of motif in Background59.1 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTTTCCAAACCA
TTTTCCA-----

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTTTCCAAACCA---
ATTTGCATAACAATG

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTTTCCAAACCA
ATTTTCCATT---

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTTTCCAAACCA---
ATTTGCATACAATGG

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTTTCCAAACCA---
ATTTGCATAACAAAG

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTTTCCAAACCA----
NNTTTTCACACCTTNNN

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTTTCCAAACCA-----
AACACCAAAACAAAGGA

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTTTCCAAACCA
TNTAATTTGCATACNA

MA0511.1_RUNX2/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CTTTCCAAACCA--------
-----CAAACCACAAACCCC

STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTTTCCAAACCA
--TTCCKNAGAA