Information for motif31


Reverse Opposite:

p-value:1e-20
log p-value:-4.835e+01
Information Content per bp:1.609
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif3.84%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets52.8 +/- 27.8bp
Average Position of motif in Background44.7 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0156.1_Plagl1_2/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CGGGTACC----
GCTGGGGGGTACCCCTT

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.70
Offset:-7
Orientation:reverse strand
Alignment:-------CGGGTACC-
NNNNATGCGGGTNNNN

PB0059.1_Six6_1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CGGGTACC------
AATAGGGTATCATATAT

PH0165.1_Six6_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGGGTACC------
AATAGGGTATCAATTAT

PH0162.1_Six2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGGGTACC------
AATGGGGTATCACGTTT

PH0166.1_Six6_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGGGTACC------
AATAGGGTATCAATATT

PH0161.1_Six1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGGGTACC------
GATGGGGTATCATTTTT

PH0163.1_Six3/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGGGTACC------
GATAGGGTATCACTAAT

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGGGTACC---
NNNNTTGGGCACNNCN

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGGGTACC
CWGGCGGGAA--