Information for motif33


Reverse Opposite:

p-value:1e-17
log p-value:-3.989e+01
Information Content per bp:1.530
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif3.93%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets47.3 +/- 31.8bp
Average Position of motif in Background64.8 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CGGCCAAT---
-AGCCAATCGG

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CGGCCAAT--
ACTAGCCAATCA

MA0502.1_NFYB/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CGGCCAAT---
AAATGGACCAATCAG

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CGGCCAAT
-TGCCAA-

MA0060.2_NFYA/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGGCCAAT---------
TGGACCAATCAGCACTCT

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGGCCAAT---
--GACAATGNN

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGGCCAAT-------
ACNNCTAATTAGNNNN

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CGGCCAAT---
TACGCCCCGCCACTCTG

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGGCCAAT
AGGCCTAG

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CGGCCAAT-----
NNNNNGAACAATTGANN