Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1094)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 541)	% of Background Sequences with Motif
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-137	-3.158e+02	0.0000	215.0	19.65%	11.1	2.05%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-135	-3.118e+02	0.0000	206.0	18.83%	10.3	1.92%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-125	-2.890e+02	0.0000	204.0	18.65%	11.4	2.12%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-71	-1.653e+02	0.0000	180.0	16.45%	17.5	3.25%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-57	-1.316e+02	0.0000	94.0	8.59%	5.8	1.07%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-56	-1.292e+02	0.0000	54.0	4.94%	1.0	0.18%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-51	-1.184e+02	0.0000	148.0	13.53%	16.2	3.01%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-50	-1.164e+02	0.0000	80.0	7.31%	4.6	0.85%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-45	-1.041e+02	0.0000	156.0	14.26%	20.5	3.81%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-41	-9.457e+01	0.0000	63.0	5.76%	3.2	0.59%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-27	-6.409e+01	0.0000	130.0	11.88%	21.9	4.08%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-25	-5.847e+01	0.0000	107.0	9.78%	16.3	3.02%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-24	-5.730e+01	0.0000	82.0	7.50%	10.0	1.86%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-24	-5.662e+01	0.0000	134.0	12.25%	24.3	4.51%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-22	-5.076e+01	0.0000	108.0	9.87%	18.7	3.47%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-20	-4.763e+01	0.0000	27.0	2.47%	0.3	0.06%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-20	-4.761e+01	0.0000	71.0	6.49%	9.2	1.70%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-20	-4.760e+01	0.0000	87.0	7.95%	13.7	2.54%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-20	-4.620e+01	0.0000	70.0	6.40%	9.6	1.78%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-19	-4.603e+01	0.0000	124.0	11.33%	24.3	4.51%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-19	-4.495e+01	0.0000	160.0	14.63%	36.1	6.70%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-18	-4.335e+01	0.0000	72.0	6.58%	10.6	1.97%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-16	-3.797e+01	0.0000	93.0	8.50%	17.5	3.25%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-16	-3.746e+01	0.0000	51.0	4.66%	6.9	1.28%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-16	-3.742e+01	0.0000	23.0	2.10%	0.3	0.06%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-15	-3.678e+01	0.0000	46.0	4.20%	5.3	0.98%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-15	-3.567e+01	0.0000	66.0	6.03%	10.1	1.88%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-14	-3.360e+01	0.0000	111.0	10.15%	25.0	4.63%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-13	-3.047e+01	0.0000	92.0	8.41%	19.4	3.61%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-12	-2.970e+01	0.0000	61.0	5.58%	10.8	2.00%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-12	-2.970e+01	0.0000	61.0	5.58%	10.2	1.89%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-12	-2.894e+01	0.0000	45.0	4.11%	6.5	1.21%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-11	-2.686e+01	0.0000	62.0	5.67%	11.4	2.12%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-11	-2.644e+01	0.0000	39.0	3.56%	5.2	0.97%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-11	-2.565e+01	0.0000	18.0	1.65%	0.0	0.00%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-10	-2.518e+01	0.0000	24.0	2.19%	2.2	0.41%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-10	-2.506e+01	0.0000	92.0	8.41%	21.6	4.01%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-10	-2.492e+01	0.0000	29.0	2.65%	3.4	0.64%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-10	-2.380e+01	0.0000	130.0	11.88%	35.7	6.63%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-10	-2.345e+01	0.0000	17.0	1.55%	0.0	0.00%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-10	-2.345e+01	0.0000	17.0	1.55%	1.7	0.32%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-10	-2.338e+01	0.0000	62.0	5.67%	12.7	2.37%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-9	-2.131e+01	0.0000	16.0	1.46%	0.0	0.00%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-9	-2.131e+01	0.0000	16.0	1.46%	1.6	0.30%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-8	-1.991e+01	0.0000	116.0	10.60%	32.4	6.02%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-8	-1.991e+01	0.0000	21.0	1.92%	2.9	0.54%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-8	-1.991e+01	0.0000	21.0	1.92%	2.6	0.48%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-8	-1.879e+01	0.0000	25.0	2.29%	3.8	0.70%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-7	-1.764e+01	0.0000	65.0	5.94%	15.4	2.85%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-7	-1.764e+01	0.0000	65.0	5.94%	15.2	2.82%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-7	-1.721e+01	0.0000	14.0	1.28%	1.7	0.32%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-7	-1.721e+01	0.0000	14.0	1.28%	0.0	0.00%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-6	-1.525e+01	0.0000	13.0	1.19%	1.3	0.24%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-6	-1.392e+01	0.0000	29.0	2.65%	5.2	0.97%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-5	-1.364e+01	0.0000	54.0	4.94%	13.7	2.55%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-5	-1.202e+01	0.0000	20.0	1.83%	3.7	0.69%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-5	-1.158e+01	0.0000	11.0	1.01%	0.0	0.00%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-4	-1.090e+01	0.0001	110.0	10.05%	36.1	6.71%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-4	-9.908e+00	0.0002	46.0	4.20%	12.9	2.40%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-4	-9.866e+00	0.0002	10.0	0.91%	0.0	0.00%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-4	-9.866e+00	0.0002	10.0	0.91%	1.5	0.27%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-4	-9.866e+00	0.0002	10.0	0.91%	1.1	0.21%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-4	-9.630e+00	0.0003	18.0	1.65%	3.4	0.63%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-3	-8.701e+00	0.0006	260.0	23.77%	104.4	19.39%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-3	-8.519e+00	0.0008	65.0	5.94%	20.7	3.84%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-8.245e+00	0.0010	9.0	0.82%	0.0	0.00%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-3	-8.219e+00	0.0010	77.0	7.04%	25.5	4.74%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-3	-8.138e+00	0.0011	35.0	3.20%	9.1	1.68%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-3	-8.082e+00	0.0011	13.0	1.19%	2.7	0.50%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-8.082e+00	0.0011	13.0	1.19%	2.5	0.47%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-3	-7.452e+00	0.0020	16.0	1.46%	3.4	0.63%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-3	-7.452e+00	0.0020	16.0	1.46%	3.2	0.60%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.272e+00	0.0023	60.0	5.48%	19.5	3.62%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-3	-7.199e+00	0.0025	19.0	1.74%	4.8	0.89%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-6.884e+00	0.0034	12.0	1.10%	2.9	0.53%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.726e+00	0.0039	8.0	0.73%	1.7	0.32%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-6.572e+00	0.0045	51.0	4.66%	16.2	3.02%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-6.550e+00	0.0045	56.0	5.12%	18.4	3.42%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-6.393e+00	0.0052	68.0	6.22%	23.6	4.38%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-2	-6.153e+00	0.0065	32.0	2.93%	9.4	1.74%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-5.800e+00	0.0092	26.0	2.38%	7.2	1.34%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.761e+00	0.0094	11.0	1.01%	2.6	0.49%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.758e+00	0.0094	34.0	3.11%	10.6	1.97%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-5.626e+00	0.0106	54.0	4.94%	18.1	3.37%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-5.548e+00	0.0111	31.0	2.83%	9.6	1.77%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-2	-5.548e+00	0.0111	31.0	2.83%	9.4	1.74%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-5.504e+00	0.0115	14.0	1.28%	3.7	0.69%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.369e+00	0.0130	41.0	3.75%	13.7	2.55%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-5.318e+00	0.0136	7.0	0.64%	1.9	0.35%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-5.275e+00	0.0140	98.0	8.96%	37.3	6.93%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-5.252e+00	0.0142	58.0	5.30%	20.5	3.80%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-5.174e+00	0.0151	65.0	5.94%	23.2	4.32%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-5.148e+00	0.0154	93.0	8.50%	35.9	6.67%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.864e+00	0.0202	135.0	12.34%	54.0	10.04%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-4.567e+00	0.0269	116.0	10.60%	46.1	8.56%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-1	-4.447e+00	0.0300	140.0	12.80%	57.9	10.76%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-4.226e+00	0.0370	53.0	4.84%	19.9	3.69%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-4.211e+00	0.0372	150.0	13.71%	62.3	11.57%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-4.135e+00	0.0397	76.0	6.95%	29.5	5.48%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-4.130e+00	0.0397	18.0	1.65%	5.1	0.94%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-4.130e+00	0.0397	18.0	1.65%	5.6	1.04%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-4.034e+00	0.0403	6.0	0.55%	0.4	0.08%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-4.034e+00	0.0403	6.0	0.55%	0.0	0.00%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-4.034e+00	0.0403	6.0	0.55%	1.3	0.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-4.034e+00	0.0403	6.0	0.55%	0.6	0.12%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-1	-4.034e+00	0.0403	6.0	0.55%	0.0	0.00%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-1	-4.034e+00	0.0403	6.0	0.55%	0.0	0.00%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-4.034e+00	0.0403	6.0	0.55%	0.6	0.11%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.951e+00	0.0430	15.0	1.37%	4.2	0.79%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.951e+00	0.0430	15.0	1.37%	4.2	0.79%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.929e+00	0.0436	33.0	3.02%	11.8	2.19%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.811e+00	0.0486	12.0	1.10%	3.4	0.62%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.764e+00	0.0505	9.0	0.82%	2.4	0.45%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.605e+00	0.0587	121.0	11.06%	50.6	9.40%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.500e+00	0.0646	17.0	1.55%	5.8	1.08%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.433e+00	0.0685	27.0	2.47%	9.7	1.80%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.375e+00	0.0719	109.0	9.96%	45.9	8.53%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-3.371e+00	0.0719	187.0	17.09%	81.1	15.06%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.235e+00	0.0813	29.0	2.65%	10.5	1.95%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.180e+00	0.0853	24.0	2.19%	8.9	1.66%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.890e+00	0.1111	5.0	0.46%	0.5	0.09%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.890e+00	0.1111	5.0	0.46%	0.8	0.15%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.890e+00	0.1111	5.0	0.46%	1.4	0.25%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.661e+00	0.1386	18.0	1.65%	6.1	1.13%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.508e+00	0.1602	81.0	7.40%	34.7	6.44%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.403e+00	0.1765	10.0	0.91%	3.2	0.60%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.181e+00	0.2188	24.0	2.19%	9.9	1.84%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.124e+00	0.2297	53.0	4.84%	22.6	4.19%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.112e+00	0.2308	12.0	1.10%	4.5	0.83%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.083e+00	0.2357	44.0	4.02%	18.6	3.46%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.060e+00	0.2394	35.0	3.20%	14.7	2.74%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.905e+00	0.2711	4.0	0.37%	1.7	0.31%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.905e+00	0.2711	4.0	0.37%	0.0	0.00%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.905e+00	0.2711	4.0	0.37%	0.9	0.17%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.905e+00	0.2711	4.0	0.37%	0.0	0.00%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.769e+00	0.3085	73.0	6.67%	33.0	6.12%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.680e+00	0.3347	27.0	2.47%	11.6	2.16%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.609e+00	0.3566	55.0	5.03%	24.9	4.63%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.581e+00	0.3642	57.0	5.21%	25.1	4.66%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.568e+00	0.3661	31.0	2.83%	13.2	2.44%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.491e+00	0.3928	6.0	0.55%	2.3	0.42%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.404e+00	0.4256	26.0	2.38%	11.6	2.16%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.342e+00	0.4497	81.0	7.40%	37.4	6.95%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.322e+00	0.4553	30.0	2.74%	13.9	2.58%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.213e+00	0.5043	260.0	23.77%	124.0	23.03%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.190e+00	0.5127	23.0	2.10%	10.7	1.98%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.156e+00	0.5267	25.0	2.29%	11.0	2.05%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.112e+00	0.5467	269.0	24.59%	129.9	24.12%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.101e+00	0.5488	3.0	0.27%	0.0	0.00%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.090e+00	0.5514	75.0	6.86%	35.1	6.51%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-8.806e-01	0.6754	63.0	5.76%	30.7	5.70%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-8.256e-01	0.7088	11.0	1.01%	5.7	1.07%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-8.050e-01	0.7189	13.0	1.19%	6.1	1.13%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-8.038e-01	0.7189	48.0	4.39%	23.5	4.37%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-7.802e-01	0.7274	101.0	9.23%	49.7	9.23%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-7.406e-01	0.7519	72.0	6.58%	35.9	6.68%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-7.053e-01	0.7739	35.0	3.20%	17.5	3.25%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-5.746e-01	0.8765	34.0	3.11%	17.3	3.21%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.715e-01	0.8765	40.0	3.66%	20.9	3.88%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.689e-01	0.8765	8.0	0.73%	4.3	0.80%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.407e-01	0.8898	94.0	8.59%	47.9	8.89%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-5.055e-01	0.8898	2.0	0.18%	0.0	0.00%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.055e-01	0.8898	2.0	0.18%	0.0	0.00%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.055e-01	0.8898	2.0	0.18%	1.0	0.19%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.055e-01	0.8898	2.0	0.18%	1.0	0.19%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.055e-01	0.8898	2.0	0.18%	0.0	0.00%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.055e-01	0.8898	2.0	0.18%	0.0	0.00%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-4.630e-01	0.9216	35.0	3.20%	18.2	3.38%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-4.089e-01	0.9671	90.0	8.23%	46.7	8.67%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.071e-01	0.9671	13.0	1.19%	7.9	1.47%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.971e-01	0.9671	58.0	5.30%	30.6	5.68%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.895e-01	1.0000	14.0	1.28%	8.5	1.58%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.642e-01	1.0000	101.0	9.23%	53.2	9.88%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.606e-01	1.0000	25.0	2.29%	14.8	2.74%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.587e-01	1.0000	3.0	0.27%	2.4	0.45%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-2.587e-01	1.0000	3.0	0.27%	2.1	0.38%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.534e-01	1.0000	10.0	0.91%	7.0	1.29%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.522e-01	1.0000	23.0	2.10%	13.2	2.44%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.522e-01	1.0000	23.0	2.10%	13.5	2.51%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.313e-01	1.0000	36.0	3.29%	20.5	3.80%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.068e-01	1.0000	15.0	1.37%	9.2	1.71%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.068e-01	1.0000	15.0	1.37%	9.9	1.84%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.812e-01	1.0000	22.0	2.01%	13.2	2.45%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.768e-01	1.0000	35.0	3.20%	20.8	3.87%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.574e-01	1.0000	94.0	8.59%	51.8	9.61%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.528e-01	1.0000	4.0	0.37%	3.0	0.56%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.480e-01	1.0000	16.0	1.46%	10.3	1.92%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.400e-01	1.0000	1.0	0.09%	1.2	0.23%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.400e-01	1.0000	1.0	0.09%	0.0	0.00%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.400e-01	1.0000	1.0	0.09%	0.6	0.12%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.400e-01	1.0000	1.0	0.09%	0.0	0.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.400e-01	1.0000	1.0	0.09%	0.0	0.00%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.275e-01	1.0000	89.0	8.14%	49.5	9.19%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.265e-01	1.0000	7.0	0.64%	5.8	1.07%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.193e-01	1.0000	12.0	1.10%	8.1	1.50%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.179e-01	1.0000	58.0	5.30%	33.3	6.19%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.142e-01	1.0000	28.0	2.56%	17.5	3.25%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.074e-01	1.0000	26.0	2.38%	16.1	3.00%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.017e-01	1.0000	146.0	13.35%	79.9	14.84%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.935e-02	1.0000	82.0	7.50%	46.5	8.63%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.585e-02	1.0000	5.0	0.46%	4.2	0.78%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.258e-02	1.0000	22.0	2.01%	14.9	2.78%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-8.504e-02	1.0000	87.0	7.95%	49.6	9.20%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.700e-02	1.0000	16.0	1.46%	11.8	2.19%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.322e-02	1.0000	50.0	4.57%	30.7	5.69%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.771e-02	1.0000	12.0	1.10%	9.8	1.81%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.719e-02	1.0000	127.0	11.61%	72.0	13.37%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.984e-02	1.0000	53.0	4.84%	33.1	6.15%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.806e-02	1.0000	16.0	1.46%	12.4	2.30%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.983e-02	1.0000	34.0	3.11%	23.7	4.40%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.852e-02	1.0000	9.0	0.82%	8.3	1.54%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.810e-02	1.0000	158.0	14.44%	90.3	16.77%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.373e-02	1.0000	18.0	1.65%	14.1	2.61%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.224e-02	1.0000	3.0	0.27%	4.5	0.84%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.199e-02	1.0000	7.0	0.64%	7.9	1.47%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.095e-02	1.0000	43.0	3.93%	29.5	5.48%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-9.963e-03	1.0000	29.0	2.65%	21.9	4.07%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-9.224e-03	1.0000	174.0	15.90%	100.9	18.74%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-8.079e-03	1.0000	51.0	4.66%	34.1	6.33%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.812e-03	1.0000	89.0	8.14%	56.6	10.50%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.378e-03	1.0000	96.0	8.78%	61.0	11.33%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.929e-03	1.0000	16.0	1.46%	14.7	2.73%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.786e-03	1.0000	14.0	1.28%	13.8	2.57%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.621e-03	1.0000	2.0	0.18%	4.4	0.81%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.535e-03	1.0000	43.0	3.93%	31.7	5.89%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.201e-03	1.0000	31.0	2.83%	24.6	4.57%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.572e-03	1.0000	9.0	0.82%	10.8	2.00%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.562e-03	1.0000	32.0	2.93%	25.1	4.66%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-8.230e-04	1.0000	44.0	4.02%	33.0	6.13%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.220e-04	1.0000	16.0	1.46%	16.3	3.02%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.200e-04	1.0000	3.0	0.27%	6.1	1.14%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.850e-04	1.0000	1.0	0.09%	4.7	0.87%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.460e-04	1.0000	22.0	2.01%	21.3	3.95%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.040e-04	1.0000	45.0	4.11%	36.4	6.77%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.300e-05	1.0000	2.0	0.18%	6.1	1.14%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.400e-05	1.0000	15.0	1.37%	18.1	3.35%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.100e-05	1.0000	54.0	4.94%	44.0	8.17%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.000e-06	1.0000	125.0	11.43%	86.9	16.13%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.000e-06	1.0000	13.0	1.19%	17.9	3.32%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.000e-06	1.0000	19.0	1.74%	23.6	4.39%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.09%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.13%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	0.8	0.14%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%