Information for motif20


Reverse Opposite:

p-value:1e-35
log p-value:-8.123e+01
Information Content per bp:1.600
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets24.2 +/- 13.6bp
Average Position of motif in Background13.8 +/- 7.8bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCGCGTTA
GGCGCGCT-

PB0008.1_E2F2_1/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCGTTA--
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCGTTA--
ANCGCGCGCCCTTNN

PB0095.1_Zfp161_1/Jaspar

Match Rank:4
Score:0.62
Offset:-8
Orientation:reverse strand
Alignment:--------GCGCGTTA
NCANGCGCGCGCGCCA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCGCGTTA
-TGCGTG-

PB0199.1_Zfp161_2/Jaspar

Match Rank:6
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------GCGCGTTA
NNGCNCTGCGCGGC-

PB0143.1_Klf7_2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCGTTA----
NNNTNGGGCGTATNNTN

MA0464.1_Bhlhe40/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGTTA-
NTGCACGTGAG

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCGCGTTA
BGCACGTA-

MA0024.2_E2F1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCGCGTTA--
CGGGCGGGAGG