Information for motif21


Reverse Opposite:

p-value:1e-30
log p-value:-7.098e+01
Information Content per bp:1.576
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets24.5 +/- 9.3bp
Average Position of motif in Background35.4 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0081.1_SPIB/Jaspar

Match Rank:1
Score:0.53
Offset:13
Orientation:forward strand
Alignment:GCARGAGCAGRGGAGARGAA
-------------AGAGGAA

MA0080.3_Spi1/Jaspar

Match Rank:2
Score:0.48
Offset:9
Orientation:forward strand
Alignment:GCARGAGCAGRGGAGARGAA----
---------AAAAAGAGGAAGTGA

MA0516.1_SP2/Jaspar

Match Rank:3
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-GCARGAGCAGRGGAGARGAA
GGGNGGGGGCGGGGC------

MA0528.1_ZNF263/Jaspar

Match Rank:4
Score:0.47
Offset:0
Orientation:forward strand
Alignment:GCARGAGCAGRGGAGARGAA-
GGAGGAGGAGGGGGAGGAGGA

MA0079.3_SP1/Jaspar

Match Rank:5
Score:0.46
Offset:3
Orientation:reverse strand
Alignment:GCARGAGCAGRGGAGARGAA
---GGGGGCGGGGC------

MA0474.1_Erg/Jaspar

Match Rank:6
Score:0.46
Offset:13
Orientation:forward strand
Alignment:GCARGAGCAGRGGAGARGAA----
-------------ACAGGAAGTGG

PB0058.1_Sfpi1_1/Jaspar

Match Rank:7
Score:0.45
Offset:10
Orientation:forward strand
Alignment:GCARGAGCAGRGGAGARGAA----
----------TTAAGAGGAAGTTA

MA0517.1_STAT2::STAT1/Jaspar

Match Rank:8
Score:0.45
Offset:10
Orientation:reverse strand
Alignment:GCARGAGCAGRGGAGARGAA-----
----------GGAAANTGAAACTNA

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.45
Offset:2
Orientation:forward strand
Alignment:GCARGAGCAGRGGAGARGAA
--TAGGGCAAAGGTCA----

MA0098.2_Ets1/Jaspar

Match Rank:10
Score:0.45
Offset:10
Orientation:reverse strand
Alignment:GCARGAGCAGRGGAGARGAA-----
----------NNNACAGGAAGTGGN