Information for motif3


Reverse Opposite:

p-value:1e-201
log p-value:-4.643e+02
Information Content per bp:1.725
Number of Target Sequences with motif207.0
Percentage of Target Sequences with motif4.39%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets24.7 +/- 12.2bp
Average Position of motif in Background28.5 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCAKGCCC
TGCGTG---

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCAKGCCC--
GCGCATGCGCAG

MA0506.1_NRF1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCAKGCCC-
GCGCCTGCGCA

POL011.1_XCPE1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCAKGCCC
GGGCGGGACC

NRF1/Promoter/Homer

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCAKGCCC
GTGCGCATGCGC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCAKGCCC
TTGCGTGCVA

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCAKGCCC-
NNGTCGCGTGNCAC

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAKGCCC
AGCGCGCC-

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------GCAKGCCC
GAGCACAGCAGGACA

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCAKGCCC--
CAAAGGCGTGGCCAG