Information for motif1


Reverse Opposite:

p-value:1e-28
log p-value:-6.507e+01
Information Content per bp:1.805
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif4.18%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets29.7 +/- 13.3bp
Average Position of motif in Background26.9 +/- 4.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----GTGTTCTG-----
NNCTTTGTTTTGNTNNN

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTGTTCTG--
CTGTTCCTGG

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GTGTTCTG--
NNGCGTGTGTGCNGCN

MA0007.2_AR/Jaspar

Match Rank:4
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------GTGTTCTG
GNACANNNTGTTCTT

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTGTTCTG--
ATTTCCTGTN

PB0120.1_Foxj1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTGTTCTG----
GTNTTGTTGTGANNT

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTGTTCTG--
ATTTCCTGTN

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GTGTTCTG--
NNNNTTGTGTGCTTNN

PB0122.1_Foxk1_2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTGTTCTG-----
NNNTGTTGTTGTTNG

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GTGTTCTG----
--GGTCTGGCAT