Information for motif12


Reverse Opposite:

p-value:1e-19
log p-value:-4.567e+01
Information Content per bp:1.672
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif4.01%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets21.5 +/- 11.3bp
Average Position of motif in Background25.2 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0098.1_Zfp410_1/Jaspar

Match Rank:1
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------ATCCCATCAA-
NNNTCCATCCCATAANN

PH0014.1_Cphx/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATCCCATCAA-
ATGATCGAATCAAA

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATCCCATCAA------
TCACCCATCAATAAACA

PH0026.1_Duxbl/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ATCCCATCAA-----
CGACCCAATCAACGGTG

MA0488.1_JUN/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATCCCATCAA---
ATGACATCATCNN

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATCCCATCAA
ATTGCATCAK

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATCCCATCAA
ATTGCATCAT

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ATCCCATCAA-
-GGCCATTAAC

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATCCCATCAA---
ATTTCCCAGVAKSCY

MA0468.1_DUX4/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ATCCCATCAA
TAATTTAATCA-