Information for motif17


Reverse Opposite:

p-value:1e-16
log p-value:-3.753e+01
Information Content per bp:1.582
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.51%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets28.0 +/- 12.9bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0103.1_Zic3_1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CRCCCGGG----
NCCCCCCCGGGGGGN

PB0102.1_Zic2_1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CRCCCGGG----
ACCCCCCCGGGGGGN

PB0101.1_Zic1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CRCCCGGG----
CCCCCCCGGGGGNN

MA0154.2_EBF1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CRCCCGGG-
GTCCCCAGGGA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CRCCCGGG--
CACAGCAGGGGG

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CRCCCGGG-
NGTCCCNNGGGA

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CRCCCGGG---
TCCCCTGGGGAC

MA0524.1_TFAP2C/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CRCCCGGG--
CATGGCCCCAGGGCA

PB0077.1_Spdef_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CRCCCGGG-----
GTACATCCGGATTTTT

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CRCCCGGG------
NNNACCGAGAGTNNN