Information for motif19


Reverse Opposite:

p-value:1e-15
log p-value:-3.533e+01
Information Content per bp:1.954
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.68%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets20.6 +/- 12.6bp
Average Position of motif in Background17.9 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0171.1_Nkx2-1/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TGAAGGGGMT--
AANTTCAAGTGGCTTN

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TGAAGGGGMT--
AAATTCAAGTGGNTTN

PH0113.1_Nkx2-4/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TGAAGGGGMT--
AATTTCAAGTGGCTTN

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGAAGGGGMT--
AATNTTAAGTGGNTNN

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGAAGGGGMT-------
TTAAGGGGATTAACTAC

MA0467.1_Crx/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TGAAGGGGMT---
--AAGAGGATTAG

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGAAGGGGMT--
NANTTTCAAGTGGTTAN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGAAGGGGMT---
NTNNTTAAGTGGNTNAN

MA0056.1_MZF1_1-4/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGAAGGGGMT
---TGGGGA-

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TGAAGGGGMT-
NTTNTATGAATGTGNNC