Information for motif25


Reverse Opposite:

p-value:1e-14
log p-value:-3.260e+01
Information Content per bp:1.756
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif4.18%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets21.0 +/- 10.6bp
Average Position of motif in Background36.8 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0524.1_TFAP2C/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GMCCTGTGKG----
TGCCCTGGGGCNANN

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GMCCTGTGKG
--GCTGTG--

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GMCCTGTGKG
ATGCCCTGAGGC

MA0512.1_Rxra/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GMCCTGTGKG
NCTGACCTTTG--

MA0003.2_TFAP2A/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GMCCTGTGKG----
TGCCCTGAGGCANTN

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GMCCTGTGKG
CTGACCTTTG--

MA0058.2_MAX/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GMCCTGTGKG-
-CCATGTGCTT

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GMCCTGTGKG
WTGSCCTSAGGS

MA0147.2_Myc/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GMCCTGTGKG-
-CCATGTGCTT

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GMCCTGTGKG
NNCACCTGNN--