Information for motif28


Reverse Opposite:

p-value:1e-12
log p-value:-2.983e+01
Information Content per bp:1.756
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets26.9 +/- 11.0bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0164.1_Six4/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CTCGGTATCA-----
TNNNNGGTGTCATNTNT

PB0059.1_Six6_1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTCGGTATCA-----
AATAGGGTATCATATAT

PH0166.1_Six6_2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTCGGTATCA-----
AATAGGGTATCAATATT

PH0161.1_Six1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTCGGTATCA-----
GATGGGGTATCATTTTT

MA0009.1_T/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTCGGTATCA-
CTAGGTGTGAA

PH0163.1_Six3/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTCGGTATCA-----
GATAGGGTATCACTAAT

PH0162.1_Six2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTCGGTATCA-----
AATGGGGTATCACGTTT

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTCGGTATCA--
--TGGTTTCAGT

PH0165.1_Six6_1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTCGGTATCA-----
AATAGGGTATCAATTAT

PB0105.1_Arid3a_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCGGTATCA-----
ACCCGTATCAAATTT