Information for motif3


Reverse Opposite:

p-value:1e-23
log p-value:-5.472e+01
Information Content per bp:1.693
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.68%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets27.7 +/- 14.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TAATCTCACC--
-NNACTTACCTN

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TAATCTCACC--
ATAGTTAATCCCCCNNA

PH0122.1_Obox2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TAATCTCACC--
ATAGTTAATCCCCCTCA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TAATCTCACC
GCTAATCC----

MA0483.1_Gfi1b/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TAATCTCACC-
AAATCACAGCA

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TAATCTCACC
AAATCACTGC

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------TAATCTCACC
GNNAGCTAATCCCCCN

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TAATCTCACC-
-KTTCACACCT

PH0124.1_Obox5_1/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------TAATCTCACC-
NANANTTAATCCCNNNN

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TAATCTCACC--
NTTGTTAATCCCTCTNN