Information for motif33


Reverse Opposite:

p-value:1e-11
log p-value:-2.737e+01
Information Content per bp:1.636
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.84%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets26.3 +/- 9.5bp
Average Position of motif in Background20.2 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0515.1_Sox6/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TCCCATTGTTTT
--CCATTGTTTT

MA0077.1_SOX9/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TCCCATTGTTTT
--CCATTGTTC-

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TCCCATTGTTTT
-NCCATTGTTC-

PB0073.1_Sox7_1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TCCCATTGTTTT-----
TNNANNTCTATTGTTNTNNANN

PB0067.1_Sox18_1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TCCCATTGTTTT----
TTCAATTGTTCTAAAA

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TCCCATTGTTTT
--CCTTTGTTTT

MA0087.1_Sox5/Jaspar

Match Rank:7
Score:0.66
Offset:4
Orientation:forward strand
Alignment:TCCCATTGTTTT
----ATTGTTA-

MA0143.3_Sox2/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TCCCATTGTTTT
--CCTTTGTT--

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TCCCATTGTTTT--
ANNTCCATTGTTCNNN

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TCCCATTGTTTT---
NNNTCCTTTGTTCTNNN