Information for motif4


Reverse Opposite:

p-value:1e-23
log p-value:-5.472e+01
Information Content per bp:1.718
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.68%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets23.5 +/- 11.8bp
Average Position of motif in Background30.2 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTGTCMTGTGTA
GCTGTG-------

MA0067.1_Pax2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGTCMTGTGTA
-AGTCACGC---

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGTCMTGTGTA
ATTTCCTGTN--

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGTCMTGTGTA
ATTTCCTGTN--

MA0523.1_TCF7L2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTGTCMTGTGTA
TNCCTTTGATCTTN-

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTGTCMTGTGTA
CTGTTCCTGG--

MA0498.1_Meis1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTGTCMTGTGTA-
AGCTGTCACTCACCT

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTGTCMTGTGTA
--GTCACGTGGT

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTGTCMTGTGTA
--GHCACGTG--

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTGTCMTGTGTA
--GTCACGTGGM