Information for motif43


Reverse Opposite:

p-value:1e-2
log p-value:-6.449e+00
Information Content per bp:1.637
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets23.2 +/- 9.6bp
Average Position of motif in Background12.5 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATTCWTYTCAGA
ACATTCATGACACG

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:ATTCWTYTCAGA---
---TTTCTNAGAAAN

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATTCWTYTCAGA-
NNCATTCATTCATNNN

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ATTCWTYTCAGA
TAATTGTTCTAAAC

PB0067.1_Sox18_1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----ATTCWTYTCAGA
TTCAATTGTTCTAAAA

PB0005.1_Bbx_1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ATTCWTYTCAGA-
TAATTCAATGAAGTG

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------ATTCWTYTCAGA
GACCACATTCATACAAT-

MA0109.1_Hltf/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ATTCWTYTCAGA
AACCTTATAT--

MA0102.3_CEBPA/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:ATTCWTYTCAGA---
----ATTGCACAATA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---ATTCWTYTCAGA
GYCATCMATCAT---