Information for motif5


Reverse Opposite:

p-value:1e-23
log p-value:-5.472e+01
Information Content per bp:1.797
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.68%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets27.6 +/- 12.5bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0044.1_Mtf1_1/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CGTGTGGA----
GGGCCGTGTGCAAAAA

MA0130.1_ZNF354C/Jaspar

Match Rank:2
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:CGTGTGGA-
---GTGGAT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CGTGTGGA
VBSYGTCTGG-

MA0479.1_FOXH1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CGTGTGGA-----
--TGTGGATTNNN

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGTGGA----
NNTNNTGTCTGGNNTNG

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CGTGTGGA---
NNHTGTGGTTWN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CGTGTGGA
CTGTCTGG-

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGTGTGGA----
NNTGTGGATTSS

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CGTGTGGA
TGCGTG----

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGTGTGGA
GGACGTGC---