Information for motif8


Reverse Opposite:

p-value:1e-22
log p-value:-5.136e+01
Information Content per bp:1.809
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.51%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets28.3 +/- 12.9bp
Average Position of motif in Background20.7 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:SCAGGTRAGYGT
-CAGGTAAGTAT

MA0103.2_ZEB1/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:SCAGGTRAGYGT
-CAGGTGAGG--

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-SCAGGTRAGYGT
NNCAGGTGNN---

MA0526.1_USF2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-SCAGGTRAGYGT
GTCATGTGACC--

MA0093.2_USF1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-SCAGGTRAGYGT
GCCACGTGACC--

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:SCAGGTRAGYGT
--AGGTCA----

MA0258.2_ESR2/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:SCAGGTRAGYGT-----
--AGGTCACCCTGACCT

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----SCAGGTRAGYGT-
ATCCACAGGTGCGAAAA

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-SCAGGTRAGYGT
KCCACGTGAC---

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:SCAGGTRAGYGT
-AAGGCAAGTGT