Information for motif9


Reverse Opposite:

p-value:1e-21
log p-value:-4.841e+01
Information Content per bp:1.672
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif5.35%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets27.5 +/- 11.9bp
Average Position of motif in Background34.9 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0002.2_RUNX1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TTCGTCTGTG----
---GTCTGTGGTTT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTCGTCTGTG-----
---NNHTGTGGTTWN

MA0511.1_RUNX2/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTCGTCTGTG-----
GGGGTTTGTGGTTTG

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTCGTCTGTG-----
NNGCGTGTGTGCNGCN

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTCGTCTGTG-----
NNNNTTGTGTGCTTNN

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TTCGTCTGTG
----GCTGTG

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TTCGTCTGTG----
----GCTGTGGTTT

MA0130.1_ZNF354C/Jaspar

Match Rank:8
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:TTCGTCTGTG---
-------GTGGAT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TTCGTCTGTG-----
-----CTGTGGTTTN

MA0058.2_MAX/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TTCGTCTGTG---
---CCATGTGCTT