Information for motif11


Reverse Opposite:

p-value:1e-40
log p-value:-9.301e+01
Information Content per bp:1.767
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif6.07%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets25.3 +/- 13.0bp
Average Position of motif in Background22.1 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAGGC
AACAAAGG-

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGGC
AAAACAAAGG-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAGGC
RACAAWGG-

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCAAAGGC
ACATCAAAGG-

MA0484.1_HNF4G/Jaspar

Match Rank:5
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAGGC--
AGAGTCCAAAGTCCA

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCAAAGGC
ACWTCAAAGG-

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCAAAGGC-
ACATCAAAGGNA

MA0523.1_TCF7L2/Jaspar

Match Rank:8
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAGGC-
AAAGATCAAAGGAA

MA0114.2_HNF4A/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GCAAAGGC---
NAGNNCAAAGTCCAN

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCAAAGGC--
TAGGGCAAAGGTCA