Information for motif20


Reverse Opposite:

p-value:1e-18
log p-value:-4.310e+01
Information Content per bp:1.398
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.66%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif1.07%
Average Position of motif in Targets29.6 +/- 14.0bp
Average Position of motif in Background21.9 +/- 4.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-DTCCAGAR-
ATGCCAGACN

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---DTCCAGAR------
CAAATCCAGACATCACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:DTCCAGAR--
--CCAGACAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:DTCCAGAR----
--CCAGACRSVB

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--DTCCAGAR-------
AAGGCCAGATGGTCCGG

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:DTCCAGAR
TGCCAA--

MA0130.1_ZNF354C/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:DTCCAGAR
ATCCAC--

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---DTCCAGAR----
TTGACCGAGAATTCC

MA0002.2_RUNX1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-DTCCAGAR--
AAACCACAGAN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--DTCCAGAR--
NWAACCACADNN