Information for motif21


Reverse Opposite:

p-value:1e-18
log p-value:-4.270e+01
Information Content per bp:1.352
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.59%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets23.9 +/- 8.2bp
Average Position of motif in Background19.3 +/- 3.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0145.2_Tcfcp2l1/Jaspar

Match Rank:1
Score:0.47
Offset:5
Orientation:forward strand
Alignment:HBYDBMHDKHHMYDKVHRRD
-----CCAGTTCAAACCAG-

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.43
Offset:7
Orientation:forward strand
Alignment:HBYDBMHDKHHMYDKVHRRD
-------ACATCCTGNT---

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.42
Offset:1
Orientation:forward strand
Alignment:HBYDBMHDKHHMYDKVHRRD-
-NNTTCTGGAANNTTCTAGAA

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.42
Offset:8
Orientation:reverse strand
Alignment:HBYDBMHDKHHMYDKVHRRD
--------CCCCCTGCTGTG

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.42
Offset:3
Orientation:reverse strand
Alignment:HBYDBMHDKHHMYDKVHRRD---
---AACCGGTTNNAACCGGTTTN

MA0028.1_ELK1/Jaspar

Match Rank:6
Score:0.41
Offset:2
Orientation:reverse strand
Alignment:HBYDBMHDKHHMYDKVHRRD
--CTTCCGGNNN--------

MA0486.1_HSF1/Jaspar

Match Rank:7
Score:0.40
Offset:2
Orientation:forward strand
Alignment:HBYDBMHDKHHMYDKVHRRD
--CTTCTAGAAGGTTCT---

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:8
Score:0.40
Offset:3
Orientation:forward strand
Alignment:HBYDBMHDKHHMYDKVHRRD
---TTCTAGAABNTTCTA--

PB0167.1_Sox13_2/Jaspar

Match Rank:9
Score:0.40
Offset:8
Orientation:forward strand
Alignment:HBYDBMHDKHHMYDKVHRRD-----
--------GTATTGGGTGGGTAATT

MA0083.2_SRF/Jaspar

Match Rank:10
Score:0.39
Offset:2
Orientation:reverse strand
Alignment:HBYDBMHDKHHMYDKVHRRD
--TTNCCTTATTTGGNCATN