Information for motif28


Reverse Opposite:

p-value:1e-3
log p-value:-8.635e+00
Information Content per bp:1.653
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.41%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif2.23%
Average Position of motif in Targets25.4 +/- 12.1bp
Average Position of motif in Background23.8 +/- 4.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---GCAGTGCTCTGT--
CGAACAGTGCTCACTAT

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GCAGTGCTCTGT
NNNANTGCAGTGCNNTT-

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAGTGCTCTGT
-CNGTCCTCCC-

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAGTGCTCTGT
TTAAGTGCTT---

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCAGTGCTCTGT
----NGCTN---

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GCAGTGCTCTGT
-----GCTCCG-

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAGTGCTCTGT
GCAGTGATTT--

MA0483.1_Gfi1b/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGTGCTCTGT
TGCTGTGATTT--

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCAGTGCTCTGT
TTGAGTGSTT---

MA0591.1_Bach1::Mafk/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GCAGTGCTCTGT------
---NTGCTGAGTCATCCN