Information for motif3


Reverse Opposite:

p-value:1e-62
log p-value:-1.445e+02
Information Content per bp:1.676
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif8.28%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets26.6 +/- 12.8bp
Average Position of motif in Background26.3 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------GTACTYGC---
TTCNAAGTACTTNNNNN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTACTYGC---
NNACTTGCCTT

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTACTYGC-
-TACTNNNN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTACTYGC
AAGCACTTAA

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTACTYGC
GGGTACGTGC

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GTACTYGC----
NNTNCGCACCTGTNGAN

PH0117.1_Nkx3-1/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GTACTYGC--
NATTTAAGTACTTANNA

PH0116.1_Nkx2-9/Jaspar

Match Rank:8
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GTACTYGC---
TTTTAAGTACTTAAATT

MA0122.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTACTYGC
NCCACTTAN

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTACTYGC
GGACGTGC