Information for motif6


Reverse Opposite:

p-value:1e-49
log p-value:-1.149e+02
Information Content per bp:1.714
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif7.03%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets21.4 +/- 11.5bp
Average Position of motif in Background29.3 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCAACAGGCT
--CACAGN--

MA0510.1_RFX5/Jaspar

Match Rank:2
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------GCAACAGGCT
CTCCCTGGCAACAGC--

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCAACAGGCT
SCCTAGCAACAG---

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAACAGGCT----
AGCAACAGCCGCACC

MA0133.1_BRCA1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCAACAGGCT
ACAACAC---

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCAACAGGCT
CCAGGAACAG---

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCAACAGGCT--
--AACAGGAAGT

MA0524.1_TFAP2C/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAACAGGCT-
CATGGCCCCAGGGCA

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCAACAGGCT--
--ANCAGGATGT

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCAACAGGCT
CCAACTGCCA