Information for motif25


Reverse Opposite:

p-value:1e-22
log p-value:-5.275e+01
Information Content per bp:1.649
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets27.4 +/- 11.3bp
Average Position of motif in Background20.6 +/- 2.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0108.2_TBP/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGTATAAGA-------
--GTATAAAAGGCGGGG

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAGTATAAGA---
TAAGATTATAATACGG

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAGTATAAGA-------
--GTATAAAAGGCGGGG

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAGTATAAGA---
TATAATTATAATATTC

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAGTATAAGA
GGTAAGTA-----

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAGTATAAGA
CCACACAGCAGGAGA

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGTATAAGA
CACAGN------

POL002.1_INR/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAGTATAAGA
TCAGTCTT---

PB0105.1_Arid3a_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGTATAAGA---
ACCCGTATCAAATTT

PB0069.1_Sox21_1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CAGTATAAGA---
TTTAATTATAATTAAG