Information for motif20


Reverse Opposite:

p-value:1e-18
log p-value:-4.312e+01
Information Content per bp:1.431
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif9.58%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif3.15%
Average Position of motif in Targets25.0 +/- 12.5bp
Average Position of motif in Background32.2 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGCTCTTGCH--
-NNACTTGCCTT

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGCTCTTGCH
TGACCTTGAN

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGCTCTTGCH---
-CCCCCTGCTGTG

PB0010.1_Egr1_1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CGCTCTTGCH--
TCCGCCCCCGCATT

MA0133.1_BRCA1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGCTCTTGCH
--GTGTTGN-

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CGCTCTTGCH
TGACCTTGAV

MA0024.2_E2F1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGCTCTTGCH--
-CCTCCCGCCCN

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGCTCTTGCH-
-GGTCTGGCAT

MA0470.1_E2F4/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGCTCTTGCH-
NNTTCCCGCCC

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CGCTCTTGCH
-GCTCCG---