Information for motif19


Reverse Opposite:

p-value:1e-13
log p-value:-3.119e+01
Information Content per bp:1.636
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif13.19%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif2.05%
Average Position of motif in Targets20.2 +/- 10.3bp
Average Position of motif in Background10.9 +/- 2.8bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TCACKCAGAC----
----CCAGACRSVB

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TCACKCAGAC--
----CCAGACAG

POL002.1_INR/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TCACKCAGAC--
----TCAGTCTT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TCACKCAGAC--
----BCAGACWA

MA0099.2_JUN::FOS/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCACKCAGAC
TGACTCA---

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCACKCAGAC------
CAAATCCAGACATCACA

MA0070.1_PBX1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TCACKCAGAC
CCATCAATCAAA-

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TCACKCAGAC
NCTGTCAATCAN--

MA0476.1_FOS/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCACKCAGAC
NATGAGTCANN-

Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCACKCAGAC-
ATGACTCAGCAD