Information for motif2


Reverse Opposite:

p-value:1e-39
log p-value:-8.985e+01
Information Content per bp:1.924
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif12.02%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets27.0 +/- 12.9bp
Average Position of motif in Background13.8 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GCTTGCCC---
--CTGCCCGCA

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCTTGCCC------
GGGTGTGCCCAAAAGG

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGCCC-
NNACTTGCCTT

MA0506.1_NRF1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCTTGCCC-
GCGCCTGCGCA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCTTGCCC-
---TGACCT

MA0056.1_MZF1_1-4/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCTTGCCC-
---TCCCCA

MA0164.1_Nr2e3/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGCCC
AAGCTTG---

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGCCC--
GCGCATGCGCAG

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCTTGCCC-
-CTTGGCAA

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCTTGCCC------
ACATGCCCGGGCAT