Information for motif22


Reverse Opposite:

p-value:1e-8
log p-value:-2.053e+01
Information Content per bp:1.720
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif6.59%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets26.8 +/- 15.1bp
Average Position of motif in Background20.0 +/- 1.5bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TGGTTTGC----
NNCTTTGTTTTGNTNNN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TGGTTTGC
CTGTGGTTTN-

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TGGTTTGC
NNTGTGGTTT--

MA0511.1_RUNX2/Jaspar

Match Rank:4
Score:0.68
Offset:-8
Orientation:forward strand
Alignment:--------TGGTTTGC
GGGGTTTGTGGTTTG-

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TGGTTTGC
NNHTGTGGTTWN-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGGTTTGC
GCTGTGGTTT--

MA0002.2_RUNX1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TGGTTTGC
GTCTGTGGTTT--

MA0073.1_RREB1/Jaspar

Match Rank:8
Score:0.61
Offset:-10
Orientation:reverse strand
Alignment:----------TGGTTTGC--
NGGGGGGGGGTGGTTTGGGG

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TGGTTTGC----
NNNNTTGTGTGCTTNN

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGGTTTGC-
ATGGGGTGAT