Information for motif5


Reverse Opposite:

p-value:1e-17
log p-value:-3.995e+01
Information Content per bp:1.697
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets28.7 +/- 13.5bp
Average Position of motif in Background27.7 +/- 4.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TGTTCAGACA-
---BCAGACWA

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGTTCAGACA-----
CAAATCCAGACATCACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGTTCAGACA-
---CCAGACAG

MA0106.2_TP53/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGTTCAGACA--
ACATGCCCAGACATG

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGTTCAGACA---
TACATGTGCACATAAAA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGTTCAGACA---
---CCAGACRSVB

Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGTTCAGACA-
HTGCTGAGTCAT

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TGTTCAGACA---
CAGATGTGCACATACGT

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGTTCAGACA
CNTGTTTACATA

NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGTTCAGACA--
TGCTGAGTCATC