Information for motif11


Reverse Opposite:

p-value:1e-28
log p-value:-6.498e+01
Information Content per bp:1.633
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif8.45%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets26.1 +/- 12.6bp
Average Position of motif in Background24.6 +/- 4.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----GACAAGGC---
NNAGGGACAAGGGCNC

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GACAAGGC--
NTCAAGGTCA

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GACAAGGC
-ACAAAG-

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GACAAGGC--
BTCAAGGTCA

MA0515.1_Sox6/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GACAAGGC
AAAACAATGG

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GACAAGGC--
AGGTCAAGGTCA

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GACAAGGC
TTGCCAAG--

MA0078.1_Sox17/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GACAAGGC-
GACAATGNN

MA0161.1_NFIC/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GACAAGGC
TGCCAA---

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GACAAGGC----
AAGTTCAAGGTCAGC