Information for motif12


Reverse Opposite:

p-value:1e-26
log p-value:-6.095e+01
Information Content per bp:1.660
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif13.38%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif1.33%
Average Position of motif in Targets25.7 +/- 14.4bp
Average Position of motif in Background28.8 +/- 5.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CCYGCCTGTG
----GCTGTG

PB0164.1_Smad3_2/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCYGCCTGTG--
TACGCCCCGCCACTCTG

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCYGCCTGTG
TTCCCGCCWG--

PB0195.1_Zbtb3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCYGCCTGTG----
NNNNTGCCAGTGATTG

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCYGCCTGTG
CCCCCTGCTGTG

MA0598.1_EHF/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCYGCCTGTG
CCTTCCTG--

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCYGCCTGTG---
NNTCCTGCTGTGNNN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCYGCCTGTG
-CTGTCTGG-

MA0516.1_SP2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCYGCCTGTG---
GCCCCGCCCCCTCCC

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCYGCCTGTG---
TNTCCTGCTGTGNNG