Information for motif13


Reverse Opposite:

p-value:1e-25
log p-value:-5.863e+01
Information Content per bp:1.599
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif10.92%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets23.6 +/- 11.2bp
Average Position of motif in Background27.3 +/- 4.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GCGTGSCY
TGCGTG---

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----GCGTGSCY--
CAAAGGCGTGGCCAG

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:3
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GCGTGSCY
TTGCGTGCVA

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----GCGTGSCY-
NNGTCGCGTGNCAC

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GCGTGSCY----
ANCGCGCGCCCTTNN

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GCGTGSCY----
NTCGCGCGCCTTNNN

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCGTGSCY
DGGGYGKGGC-

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCGTGSCY
AGCGCGCC-

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCGTGSCY------
GGGTGTGCCCAAAAGG

MA0039.2_Klf4/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCGTGSCY
TGGGTGGGGC-