Information for motif20


Reverse Opposite:

p-value:1e-13
log p-value:-3.214e+01
Information Content per bp:1.554
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif6.34%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets26.7 +/- 8.3bp
Average Position of motif in Background39.0 +/- 6.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CGCGAGTGCT---
NNGCGTGTGTGCNGCN

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGCGAGTGCT
NNNACCGAGAGTNNN

MA0527.1_ZBTB33/Jaspar

Match Rank:3
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------CGCGAGTGCT
NAGNTCTCGCGAGAN--

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CGCGAGTGCT------
CGAACAGTGCTCACTAT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGCGAGTGCT
CTYRAGTGSY

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGCGAGTGCT-
-TTAAGTGCTT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGCGAGTGCT-
-TTGAGTGSTT

PB0044.1_Mtf1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGCGAGTGCT----
GGGCCGTGTGCAAAAA

MA0506.1_NRF1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGCGAGTGCT--
-GCGCCTGCGCA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGCGAGTGCT-
CTTGAGTGGCT