Information for motif23


Reverse Opposite:

p-value:1e-10
log p-value:-2.513e+01
Information Content per bp:1.738
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif4.23%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets26.4 +/- 12.7bp
Average Position of motif in Background29.0 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CACGTTTGCT
GCACGTACCC-

PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CACGTTTGCT--
GTCACGCTCNCTGA

MA0148.3_FOXA1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACGTTTGCT---
TCCATGTTTACTTTG

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CACGTTTGCT------
-NCCGTTGCTANGNGN

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CACGTTTGCT
GCACGTNC---

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CACGTTTGCT--
--CACTTCCTGT

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CACGTTTGCT------
-NNCGTTGCTATGGNN

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CACGTTTGCT--
--TGTTTACTTT

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CACGTTTGCT--
--TGTTTACTTT

MA0004.1_Arnt/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CACGTTTGCT
CACGTG----