PeakID (cmd=annotatePeaks.pl shared_peaks.txt hg19) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 561_WT_peak_1929 chr12 133263739 133264365 + 4609 NA promoter-TSS (NM_006231) promoter-TSS (NM_006231) 58 NM_006231 5426 Hs.524871 NM_006231 HPRD:07177 POLE CRCS12|FILS|POLE1 polymerase (DNA directed), epsilon, catalytic subunit protein-coding 561_WT_peak_6902 chr7 150974131 150975108 + 4208 NA promoter-TSS (NM_003078) promoter-TSS (NM_003078) -388 NM_003078 6604 Hs.647067 NM_003078 HPRD:03440 SMARCD3 BAF60C|CRACD3|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding 561_WT_peak_2870 chr16 67225432 67226403 + 4176 NA promoter-TSS (NM_001950) promoter-TSS (NM_001950) -151 NM_001950 1874 Hs.108371 NM_001950 HPRD:02806 E2F4 E2F-4 E2F transcription factor 4, p107/p130-binding protein-coding 561_WT_peak_11 chr1 1243221 1244077 + 4095 NA promoter-TSS (NM_153339) promoter-TSS (NM_153339) -345 NM_153339 126789 Hs.400659 NM_153339 HPRD:08301 PUSL1 - pseudouridylate synthase-like 1 protein-coding 561_WT_peak_1049 chr10 75254995 75256346 + 4042 NA 5' UTR (NM_001289969, exon 1 of 13) 5' UTR (NM_001289969, exon 1 of 13) 112 NM_001142354 5532 Hs.500067 NM_021132 HPRD:00235 PPP3CB CALNA2|CALNB|CNA2|PP2Bbeta protein phosphatase 3, catalytic subunit, beta isozyme protein-coding 561_WT_peak_2434 chr15 40400901 40401743 + 4014 NA promoter-TSS (NM_001003940) promoter-TSS (NM_001003940) -237 NM_001003943 90427 Hs.591104 NM_033503 HPRD:05881 BMF - Bcl2 modifying factor protein-coding 561_WT_peak_1517 chr11 123985508 123986421 + 3982 NA promoter-TSS (NM_014622) promoter-TSS (NM_014622) -147 NM_198315 4013 Hs.152944 NM_014622 HPRD:04238 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 561_WT_peak_6110 chr6 15245546 15246489 + 3979 NA promoter-TSS (NM_004973) promoter-TSS (NM_004973) -189 NM_004973 3720 Hs.269059 NM_004973 HPRD:03355 JARID2 JMJ jumonji, AT rich interactive domain 2 protein-coding 561_WT_peak_7181 chr8 144679000 144679840 + 3935 NA promoter-TSS (NM_032862) promoter-TSS (NM_032862) 138 NM_001130057 1936 Hs.333388 NM_001960 HPRD:00560 EEF1D EF-1D|EF1D|FP1047 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) protein-coding 561_WT_peak_2694 chr16 10970511 10971515 + 3835 NA promoter-TSS (NM_000246) promoter-TSS (NM_000246) -42 NM_000246 4261 Hs.701991 NM_000246 HPRD:02475 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II, major histocompatibility complex, transactivator protein-coding 561_WT_peak_2647 chr16 1358637 1359539 + 3819 NA promoter-TSS (NM_194260) promoter-TSS (NM_194260) -66 NM_194260 7329 Hs.302903 NM_003345 HPRD:09045 UBE2I C358B7.1|P18|UBC9 ubiquitin-conjugating enzyme E2I protein-coding 561_WT_peak_3554 chr19 924760 925966 + 3790 NA promoter-TSS (NM_005224) promoter-TSS (NM_005224) -674 NM_005224 1820 Hs.501296 NM_005224 ARID3A BRIGHT|DRIL1|DRIL3|E2FBP1 AT rich interactive domain 3A (BRIGHT-like) protein-coding 561_WT_peak_3809 chr19 46220542 46221145 + 3727 NA intron (NM_001080469, intron 1 of 1) intron (NM_001080469, intron 1 of 1) 13308 NM_001080469 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 561_WT_peak_4470 chr2 219260629 219261751 + 3647 NA 3' UTR (NM_000578, exon 15 of 15) 3' UTR (NM_000578, exon 15 of 15) -1871 NM_001206878 58190 Hs.444468 NM_021198 HPRD:05615 CTDSP1 NIF3|NLI-IF|NLIIF|SCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein-coding 561_WT_peak_525 chr1 151689190 151689734 + 3616 NA promoter-TSS (NM_001172648) promoter-TSS (NM_001172648) -166 NM_001291106 11189 Hs.26047 NM_007185 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP, Elav-like family member 3 protein-coding 561_WT_peak_6782 chr7 102003697 102004444 + 3576 NA promoter-TSS (NR_038967) promoter-TSS (NR_038967) -238 NR_038967 100630923 Hs.406395 NR_038967 LOC100630923 - LOC100289561-PRKRIP1 readthrough ncRNA 561_WT_peak_4674 chr20 48330430 48331188 + 3539 NA promoter-TSS (NM_004776) promoter-TSS (NM_004776) -388 NM_004776 9334 Hs.370487 NM_004776 HPRD:06807 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 protein-coding 561_WT_peak_4055 chr2 46727156 46727951 + 3532 NA Intergenic Intergenic 19543 NM_080653 90423 Hs.659656 NM_080653 HPRD:16525 ATP6V1E2 ATP6E1|ATP6EL2|ATP6V1EL2|VMA4 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2 protein-coding 561_WT_peak_5881 chr5 115176894 115177732 + 3442 NA promoter-TSS (NM_001284) promoter-TSS (NM_001284) 235 NM_001277783 9140 Hs.264482 NM_004707 HPRD:08496 ATG12 APG12|APG12L|FBR93|HAPG12 autophagy related 12 protein-coding 561_WT_peak_447 chr1 145575363 145576263 + 3413 NA promoter-TSS (NM_006099) promoter-TSS (NM_006099) -175 NM_006099 10401 Hs.435761 NM_006099 HPRD:09068 PIAS3 ZMIZ5 protein inhibitor of activated STAT, 3 protein-coding 561_WT_peak_5239 chr3 127309067 127310001 + 3369 NA promoter-TSS (NM_001136053) promoter-TSS (NM_001136053) 68 NM_001136053 131601 Hs.6418 NM_016372 HPRD:16318 TPRA1 GPR175|TMEM227|TPRA40 transmembrane protein, adipocyte asscociated 1 protein-coding 561_WT_peak_2143 chr14 24582910 24584160 + 3342 NA promoter-TSS (NM_181357) promoter-TSS (NM_181357) -371 NM_001163484 80344 Hs.525251 NM_025230 HPRD:18297 DCAF11 PRO2389|WDR23 DDB1 and CUL4 associated factor 11 protein-coding 561_WT_peak_3370 chr17 76970786 76971530 + 3323 NA intron (NM_005567, intron 3 of 5) intron (NM_005567, intron 3 of 5) 4903 NM_005567 3959 Hs.514535 NM_005567 HPRD:02796 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 lectin, galactoside-binding, soluble, 3 binding protein protein-coding 561_WT_peak_1365 chr11 65429951 65431494 + 3309 NA promoter-TSS (NM_001243984) promoter-TSS (NM_001243984) -279 NM_001243985 5970 Hs.502875 NM_021975 HPRD:01241 RELA NFKB3|p65 v-rel avian reticuloendotheliosis viral oncogene homolog A protein-coding 561_WT_peak_1339 chr11 64794391 64795445 + 3303 NA promoter-TSS (NM_013306) promoter-TSS (NM_013306) 38 NM_013306 29907 Hs.80132 NM_013306 HPRD:12073 SNX15 HSAF001435 sorting nexin 15 protein-coding 561_WT_peak_2641 chr16 420472 421063 + 3289 NA promoter-TSS (NM_006428) promoter-TSS (NM_006428) -198 NM_006428 10573 Hs.513230 NM_006428 ENSG00000086504 MRPL28 MAAT1|p15 mitochondrial ribosomal protein L28 protein-coding 561_WT_peak_1402 chr11 71639372 71640355 + 3286 NA promoter-TSS (NR_029192) promoter-TSS (NR_029192) 95 NR_024147 55298 Hs.368554 NM_018320 HPRD:11497 RNF121 - ring finger protein 121 protein-coding 561_WT_peak_3901 chr19 56159115 56159975 + 3281 NA 5' UTR (NM_013301, exon 1 of 6) 5' UTR (NM_013301, exon 1 of 6) 591 NM_013301 29903 Hs.82482 NM_013301 CCDC106 HSU79303|ZNF581 coiled-coil domain containing 106 protein-coding 561_WT_peak_1908 chr12 123459070 123460062 + 3143 NA 5' UTR (NM_024623, exon 1 of 8) 5' UTR (NM_024623, exon 1 of 8) 212 NM_024623 79676 Hs.524817 NM_024623 HPRD:07829 OGFOD2 - 2-oxoglutarate and iron-dependent oxygenase domain containing 2 protein-coding 561_WT_peak_1645 chr12 31881693 31882479 + 3139 NA promoter-TSS (NR_103523) promoter-TSS (NR_103523) 22 NM_001278411 196394 Hs.585084 NM_001113402 HPRD:14115 AMN1 - antagonist of mitotic exit network 1 homolog (S. cerevisiae) protein-coding 561_WT_peak_1138 chr10 104952287 104953648 + 3118 NA promoter-TSS (NM_012229) promoter-TSS (NM_012229) 96 NM_012229 22978 Hs.97439 NM_012229 HPRD:02686 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 561_WT_peak_1662 chr12 46122198 46123010 + 3084 NA promoter-TSS (NR_028408) promoter-TSS (NR_028408) -900 NR_028408 400027 Hs.597122 NR_028408 ENSG00000273015 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 561_WT_peak_4869 chr22 29663461 29664845 + 2969 NA promoter-TSS (NM_012265) promoter-TSS (NM_012265) 155 NM_001163285 2130 Hs.374477 NM_005243 HPRD:00592 EWSR1 EWS|bK984G1.4 EWS RNA-binding protein 1 protein-coding 561_WT_peak_1192 chr11 5246179 5247364 + 2966 NA TTS (NM_000518) TTS (NM_000518) 1530 NM_000518 3043 Hs.523443 NM_000518 HPRD:00786 HBB CD113t-C|beta-globin hemoglobin, beta protein-coding 561_WT_peak_1661 chr12 46120929 46121855 + 2942 NA non-coding (NR_028408, exon 1 of 1) non-coding (NR_028408, exon 1 of 1) 312 NR_028408 400027 Hs.597122 NR_028408 ENSG00000273015 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 561_WT_peak_6371 chr6 74229793 74231696 + 2865 NA promoter-TSS (NM_001402) promoter-TSS (NM_001402) 11 NM_001402 1915 Hs.535192 NM_001402 HPRD:00559 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 561_WT_peak_4309-2 chr2 134876820 134878304 + 2788 NA Intergenic CpG -7134 NR_037450 100500878 NR_037450 miRBase:MI0016080 MIR3679 - microRNA 3679 ncRNA 561_WT_peak_4309 chr2 134875910 134876387 + 2788 NA Intergenic Intergenic -8548 NR_037450 100500878 NR_037450 miRBase:MI0016080 MIR3679 - microRNA 3679 ncRNA 561_WT_peak_3363 chr17 76164088 76164823 + 2759 NA promoter-TSS (NM_004710) promoter-TSS (NM_004710) -216 NM_004710 9144 Hs.464210 NM_004710 HPRD:04891 SYNGR2 - synaptogyrin 2 protein-coding 561_WT_peak_3500 chr18 47018565 47019557 + 2732 NA promoter-TSS (NM_000985) promoter-TSS (NM_000985) -126 NM_001199345 6139 Hs.293653 NM_000985 HPRD:04715 RPL17 L17|PD-1|RPL23 ribosomal protein L17 protein-coding 561_WT_peak_2449 chr15 43397781 43398550 + 2500 NA exon (NM_174916, exon 1 of 47) exon (NM_174916, exon 1 of 47) 121 NM_174916 197131 Hs.591121 NM_174916 HPRD:09342 UBR1 JBS ubiquitin protein ligase E3 component n-recognin 1 protein-coding 561_WT_peak_1419 chr11 76493703 76494350 + 2405 NA promoter-TSS (NR_120561) promoter-TSS (NR_120561) 80 NR_120561 101928837 Hs.656851 NR_120561 LOC101928837 - uncharacterized LOC101928837 ncRNA 561_WT_peak_4056 chr2 46768845 46769714 + 2218 NA promoter-TSS (NM_012249) promoter-TSS (NM_012249) -588 NM_012249 23433 Hs.709193 NM_012249 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 561_WT_peak_6578 chr7 5084956 5085655 + 2159 NA promoter-TSS (NM_001204456) promoter-TSS (NM_001204456) -147 NM_001204513 100533952 Hs.396178 NM_001204513 ENSG00000272968 RBAK-RBAKDN RBAK-LOC389458 RBAK-RBAKDN readthrough protein-coding 561_WT_peak_1570 chr12 8085746 8086419 + 2156 NA intron (NM_006931, intron 2 of 9) intron (NM_006931, intron 2 of 9) 2810 NM_006931 6515 Hs.419240 NM_006931 HPRD:00686 SLC2A3 GLUT3 solute carrier family 2 (facilitated glucose transporter), member 3 protein-coding 561_WT_peak_6745 chr7 90893379 90894050 + 2101 NA promoter-TSS (NM_003505) promoter-TSS (NM_003505) -69 NM_003505 8321 Hs.94234 NM_003505 HPRD:04558 FZD1 - frizzled class receptor 1 protein-coding 561_WT_peak_4662 chr20 47444530 47445138 + 2010 NA promoter-TSS (NM_020820) promoter-TSS (NM_020820) -414 NM_020820 57580 Hs.153310 NM_020820 HPRD:06066 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 561_WT_peak_2934 chr16 87328867 87329300 + 1711 NA Intergenic Intergenic -3025 NR_104667 101928682 Hs.149004 NR_104667 LOC101928682 - uncharacterized LOC101928682 ncRNA 561_WT_peak_4878 chr22 30819942 30820782 + 1664 NA 3' UTR (NM_001204204, exon 10 of 10) 3' UTR (NM_001204204, exon 10 of 10) -1249 NM_016498 51537 Hs.713636 NM_016498 HPRD:17612 MTFP1 MTP18 mitochondrial fission process 1 protein-coding 561_WT_peak_6584 chr7 6746490 6747276 + 1646 NA promoter-TSS (NM_016265) promoter-TSS (NM_016265) -317 NM_016265 7559 Hs.431471 NM_006956 HPRD:11835 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 561_WT_peak_3069 chr17 19091168 19093753 + 1633 NA Intergenic L1MC|LINE|L1 -30235 NM_001291904 79999 Hs.677375 NM_024934 LOC79999 - uncharacterized LOC79999 protein-coding 561_WT_peak_4879 chr22 30821303 30822073 + 1624 NA promoter-TSS (NM_016498) promoter-TSS (NM_016498) 77 NM_001003704 51537 Hs.713636 NM_016498 HPRD:17612 MTFP1 MTP18 mitochondrial fission process 1 protein-coding 561_WT_peak_2908 chr16 75182052 75182553 + 1621 NA promoter-TSS (NM_153688) promoter-TSS (NM_153688) -119 NM_153688 162239 Hs.388813 NM_153688 HPRD:15724 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 561_WT_peak_3066 chr17 18965036 18966318 + 1617 NA Intergenic CpG -15341 NM_006613 10750 Hs.567416 NM_006613 GRAP - GRB2-related adaptor protein protein-coding 561_WT_peak_472 chr1 148241431 148242227 + 1611 NA intron (NR_102404, intron 6 of 18).2 intron (NR_102404, intron 6 of 18).2 -39293 NM_001164261 645142 Hs.730589 NM_001164261 ENSG00000256374 PPIAL4D - peptidylprolyl isomerase A (cyclophilin A)-like 4D protein-coding 561_WT_peak_6731 chr7 76178132 76178690 + 1554 NA promoter-TSS (NR_029411) promoter-TSS (NR_029411) -247 NR_029411 100133091 Hs.712837 NR_029411 ENSG00000205485 LOC100133091 - uncharacterized LOC100133091 ncRNA 561_WT_peak_2306 chr14 77647628 77648276 + 1504 NA promoter-TSS (NM_020431) promoter-TSS (NM_020431) -150 NM_020431 57156 Hs.22452 NM_020431 HPRD:16617 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 561_WT_peak_3068 chr17 19014540 19016129 + 1486 NA Intergenic AluSx|SINE|Alu -15448 NM_001129778 400581 Hs.661470 NM_001129778 GRAPL - GRB2-related adaptor protein-like protein-coding 561_WT_peak_6702 chr7 72349434 72350037 + 1477 NA promoter-TSS (NM_001257190) promoter-TSS (NM_001257190) -171 NM_001257190 9883 Hs.655217 NM_172020 HPRD:11448 POM121 P145|POM121A POM121 transmembrane nucleoporin protein-coding 561_WT_peak_6723 chr7 75115488 75116019 + 1316 NA promoter-TSS (NM_001099415) promoter-TSS (NM_001099415) -188 NM_001099415 100101267 Hs.712563 NM_001099415 ENSG00000135213 POM121C POM121-2 POM121 transmembrane nucleoporin C protein-coding 561_WT_peak_284 chr1 67895596 67896597 + 1256 NA promoter-TSS (NM_015640) promoter-TSS (NM_015640) 27 NM_001018069 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 561_WT_peak_6582 chr7 6143927 6144522 + 1253 NA promoter-TSS (NM_032172) promoter-TSS (NM_032172) -326 NM_032172 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 561_WT_peak_51 chr1 9748909 9749553 + 1240 NA intron (NM_005026, intron 1 of 23) intron (NM_005026, intron 1 of 23) -34587 NR_027045 644997 Hs.568595 NM_001045478 ENSG00000179840 C1orf200 - chromosome 1 open reading frame 200 ncRNA 561_WT_peak_78 chr1 16839982 16841021 + 1228 NA Intergenic Intergenic -21305 NR_023386 114819 Hs.597881 NR_023386 ENSG00000080947 CROCCP3 CROCCL2|dJ798A10.2 ciliary rootlet coiled-coil, rootletin pseudogene 3 pseudo 561_WT_peak_3192 chr17 41437417 41438932 + 1227 NA Intergenic Intergenic 28092 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 561_WT_peak_1322 chr11 62607752 62609437 + 1213 NA promoter-TSS (NM_018093) promoter-TSS (NM_018093) -966 NM_018093 54663 Hs.654620 NM_018093 HPRD:08548 WDR74 - WD repeat domain 74 protein-coding 561_WT_peak_5778 chr5 66110305 66110646 + 1186 NA intron (NM_198828, intron 3 of 5) intron (NM_198828, intron 3 of 5) -14129 NM_015183 375449 Hs.595458 NM_015183 HPRD:14195 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 561_WT_peak_3457 chr18 19320660 19321163 + 1173 NA promoter-TSS (NM_020774) promoter-TSS (NM_020774) -379 NM_020774 57534 Hs.140903 NM_020774 HPRD:06660 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 561_WT_peak_4727 chr20 62587724 62588098 + 1164 NA promoter-TSS (NM_017859) promoter-TSS (NM_017859) -111 NM_017859 54963 Hs.504998 NM_017859 HPRD:15607 UCKL1 UCK1-LIKE|UCK1L|URKL1 uridine-cytidine kinase 1-like 1 protein-coding 561_WT_peak_483 chr1 149223441 149224848 + 1161 NA Intergenic U1|snRNA|snRNA -62986 NR_111933 388692 Hs.271249 NM_001013644 LOC388692 - uncharacterized LOC388692 ncRNA 561_WT_peak_3067 chr17 18966518 18967637 + 1159 NA Intergenic CpG -16741 NM_006613 10750 Hs.567416 NM_006613 GRAP - GRB2-related adaptor protein protein-coding 561_WT_peak_1591 chr12 10561992 10562373 + 1079 NA 5' UTR (NM_013431, exon 1 of 4) 5' UTR (NM_013431, exon 1 of 4) 174 NM_013431 8302 Hs.721094 NM_013431 HPRD:16008 KLRC4 NKG2-F|NKG2F killer cell lectin-like receptor subfamily C, member 4 protein-coding 561_WT_peak_500 chr1 149857094 149859573 + 1063 NA promoter-TSS (NM_003517) promoter-TSS (NM_003517) -101 NM_003528 8349 Hs.2178 NM_003528 HPRD:03494 HIST2H2BE GL105|H2B|H2B.1|H2BFQ|H2BGL105|H2BQ histone cluster 2, H2be protein-coding 561_WT_peak_566 chr1 156736892 156737738 + 1049 NA promoter-TSS (NM_005973) promoter-TSS (NM_005973) 41 NM_005973 5546 Hs.516948 NM_005973 HPRD:01562 PRCC RCCP1|TPRC papillary renal cell carcinoma (translocation-associated) protein-coding 561_WT_peak_1562 chr12 6961318 6961917 + 1045 NA promoter-TSS (NM_001297603) promoter-TSS (NM_001297603) 326 NM_003481 8078 Hs.631661 NM_003481 HPRD:03265 USP5 ISOT ubiquitin specific peptidase 5 (isopeptidase T) protein-coding 561_WT_peak_4171 chr2 85788684 85789125 + 1041 NA promoter-TSS (NM_001142269) promoter-TSS (NM_001142269) -247 NM_000821 2677 Hs.77719 NM_000821 HPRD:00665 GGCX VKCFD1 gamma-glutamyl carboxylase protein-coding 561_WT_peak_2169 chr14 35024826 35025788 + 1034 NA Intergenic CpG -16364 NM_018453 55837 Hs.433269 NM_018453 HPRD:12631 EAPP BM036|C14orf11 E2F-associated phosphoprotein protein-coding 561_WT_peak_5027 chr3 16883557 16884955 + 1023 NA Intergenic Intergenic -42196 NM_001144382 23228 Hs.741267 NM_015184 HPRD:07147 PLCL2 PLCE2 phospholipase C-like 2 protein-coding 561_WT_peak_4615 chr20 34329314 34330951 + 1007 NA non-coding (NR_040722, exon 1 of 18) non-coding (NR_040722, exon 1 of 18) 126 NM_001242599 9584 Hs.282901 NM_004902 HPRD:09201 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 561_WT_peak_469 chr1 147994074 147995051 + 985 NA TTS (NR_104086) TTS (NR_104086) 416 NR_104086 101954277 NR_104086 RNVU1-19 RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19 RNA, variant U1 small nuclear 19 snRNA 561_WT_peak_487 chr1 149513419 149514380 + 962 NA TTS (NR_104086).2 TTS (NR_104086).2 357 NR_104086 101954277 NR_104086 RNVU1-19 RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19 RNA, variant U1 small nuclear 19 snRNA 561_WT_peak_82 chr1 17222264 17223410 + 957 NA Intergenic Intergenic -25608 NM_014675 9696 Hs.309403 NM_014675 HPRD:16758 CROCC ROLT ciliary rootlet coiled-coil, rootletin protein-coding 561_WT_peak_4472 chr2 219264210 219264998 + 953 NA 5' UTR (NM_182642, exon 1 of 7) 5' UTR (NM_182642, exon 1 of 7) 126 NM_182642 58190 Hs.444468 NM_021198 HPRD:05615 CTDSP1 NIF3|NLI-IF|NLIIF|SCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein-coding 561_WT_peak_81 chr1 17066741 17067918 + 937 NA Intergenic Intergenic -6373 NM_001282321 729574 NM_001282321 ENSG00000237847 FAM231A FAM231C family with sequence similarity 231, member A protein-coding 561_WT_peak_3587 chr19 4791408 4791985 + 920 NA promoter-TSS (NM_018708) promoter-TSS (NM_018708) -32 NM_018708 55527 Hs.515082 NM_018708 HPRD:16888 FEM1A EPRAP fem-1 homolog a (C. elegans) protein-coding 561_WT_peak_941 chr10 32635205 32636192 + 905 NA promoter-TSS (NR_104163) promoter-TSS (NR_104163) 278 NM_001272019 80314 Hs.167805 NM_025209 HPRD:09941 EPC1 Epl1 enhancer of polycomb homolog 1 (Drosophila) protein-coding 561_WT_peak_80 chr1 16992605 16993665 + 904 NA Intergenic Intergenic -6363 NM_001282321 729574 NM_001282321 ENSG00000237847 FAM231A FAM231C family with sequence similarity 231, member A protein-coding 561_WT_peak_2168 chr14 35015739 35016804 + 895 NA Intergenic CpG -7328 NM_018453 55837 Hs.433269 NM_018453 HPRD:12631 EAPP BM036|C14orf11 E2F-associated phosphoprotein protein-coding 561_WT_peak_297 chr1 78469712 78470403 + 888 NA promoter-TSS (NM_007034) promoter-TSS (NM_007034) -579 NM_007034 11080 Hs.13852 NM_007034 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ (Hsp40) homolog, subfamily B, member 4 protein-coding 561_WT_peak_6928 chr8 9413360 9414038 + 861 NA exon (NM_003747, exon 1 of 27) exon (NM_003747, exon 1 of 27) 254 NM_003747 8658 Hs.370267 NM_003747 HPRD:04490 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase protein-coding 561_WT_peak_5180 chr3 101405235 101405861 + 854 NA promoter-TSS (NM_000986) promoter-TSS (NM_000986) 15 NM_000986 6152 Hs.477028 NM_000986 HPRD:10365 RPL24 HEL-S-310|L24 ribosomal protein L24 protein-coding 561_WT_peak_3098 chr17 27278637 27279602 + 850 NA promoter-TSS (NM_020889) promoter-TSS (NM_020889) -611 NM_001290131 57649 Hs.444173 NM_020889 HPRD:15123 PHF12 PF1 PHD finger protein 12 protein-coding 561_WT_peak_477 chr1 148604278 148605063 + 849 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) 43823 NM_173638 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 561_WT_peak_460 chr1 147510571 147511604 + 845 NA Intergenic U1|snRNA|snRNA -23899 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 561_WT_peak_2515 chr15 65588216 65588982 + 836 NA Intergenic Intergenic -9581 NM_017851 54956 Hs.30634 NM_017851 HPRD:07919 PARP16 ARTD15|C15orf30|pART15 poly (ADP-ribose) polymerase family, member 16 protein-coding 561_WT_peak_1983 chr13 31736329 31736781 + 832 NA promoter-TSS (NM_001286504) promoter-TSS (NM_001286504) -30 NM_001286505 10808 Hs.743267 NM_006644 HPRD:09990 HSPH1 HSP105|HSP105A|HSP105B|NY-CO-25 heat shock 105kDa/110kDa protein 1 protein-coding 561_WT_peak_6274 chr6 31509159 31510155 + 808 NA promoter-TSS (NR_003065).3 promoter-TSS (NR_003065).3 595 NM_004640 7919 Hs.254042 NM_004640 HPRD:00805 DDX39B BAT1|D6S81E|UAP56 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B protein-coding 561_WT_peak_4078 chr2 55843984 55845361 + 793 NA 5' UTR (NM_020463, exon 1 of 15) 5' UTR (NM_020463, exon 1 of 15) 188 NM_001122964 57223 Hs.516182 NM_020463 HPRD:13854 SMEK2 FLFL2|PP4R3B|PSY2|smk1 SMEK homolog 2, suppressor of mek1 (Dictyostelium) protein-coding 561_WT_peak_1814 chr12 96429353 96429971 + 771 NA promoter-TSS (NM_000895) promoter-TSS (NM_000895) -223 NM_000895 4048 Hs.524648 NM_000895 HPRD:01056 LTA4H - leukotriene A4 hydrolase protein-coding 561_WT_peak_5387 chr4 1040060 1040740 + 769 NA Intergenic (CCCTAG)n|Simple_repeat|Simple_repeat 34148 NM_021923 53834 Hs.193326 NM_021923 HPRD:16163 FGFRL1 FGFR5|FHFR fibroblast growth factor receptor-like 1 protein-coding 561_WT_peak_431 chr1 144533926 144534597 + 751 NA intron (NM_001278267, intron 52 of 130) intron (NM_001278267, intron 52 of 130) 78458 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 561_WT_peak_1416 chr11 75946376 75947108 + 742 NA Intergenic CpG -29168 NM_004626 7481 Hs.108219 NM_004626 HPRD:04741 WNT11 HWNT11 wingless-type MMTV integration site family, member 11 protein-coding 561_WT_peak_3528 chr18 71815188 71816033 + 742 NA promoter-TSS (NM_014177) promoter-TSS (NM_014177) -136 NM_014177 29090 Hs.532835 NM_014177 HPRD:13706 TIMM21 C18orf55|TIM21 translocase of inner mitochondrial membrane 21 homolog (yeast) protein-coding 561_WT_peak_147 chr1 28974948 28975590 + 736 NA TTS (NR_004407) TTS (NR_004407) 157 NR_004407 26824 Hs.640266 NR_004407 ENSG00000270103 RNU11 RNU11-1|U11 RNA, U11 small nuclear snRNA 561_WT_peak_1713 chr12 53894871 53895566 + 734 NA promoter-TSS (NM_134324) promoter-TSS (NM_134324) -159 NM_134324 6895 Hs.326 NM_004178 HPRD:05446 TARBP2 LOQS|TRBP|TRBP1|TRBP2 TAR (HIV-1) RNA binding protein 2 protein-coding 561_WT_peak_1872 chr12 117175784 117176099 + 724 NA promoter-TSS (NM_032814) promoter-TSS (NM_032814) -98 NM_024738 79794 Hs.592011 NM_024738 HPRD:07962 C12orf49 - chromosome 12 open reading frame 49 protein-coding 561_WT_peak_2753 chr16 28198068 28198441 + 719 NA intron (NM_015171, intron 1 of 23) intron (NM_015171, intron 1 of 23) 24985 NM_001270940 23214 Hs.460468 NM_015171 HPRD:10525 XPO6 EXP6|RANBP20 exportin 6 protein-coding 561_WT_peak_2602 chr15 90951230 90951781 + 713 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 20032 NM_003870 8826 Hs.430551 NM_003870 HPRD:04541 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 561_WT_peak_6348 chr6 52860290 52860856 + 709 NA promoter-TSS (NM_001512) promoter-TSS (NM_001512) -395 NM_001512 2941 Hs.485557 NM_001512 HPRD:06899 GSTA4 GSTA4-4|GTA4 glutathione S-transferase alpha 4 protein-coding 561_WT_peak_2047 chr13 49227641 49228156 + 701 NA Intergenic Intergenic -53053 NM_020377 57105 Hs.253706 NM_020377 HPRD:09293 CYSLTR2 CYSLT2|CYSLT2R|HG57|HPN321|KPG_011|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 561_WT_peak_2789 chr16 30709322 30709918 + 693 NA promoter-TSS (NM_006662) promoter-TSS (NM_006662) 190 NM_001256932 730183 Hs.535456 NM_001256932 LOC730183 - uncharacterized LOC730183 protein-coding 561_WT_peak_3469 chr18 21826131 21826459 + 686 NA intron (NM_080597, intron 15 of 27) intron (NM_080597, intron 15 of 27) 25901 NM_018030 114876 Hs.370725 NM_018030 HPRD:09472 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein-like 1A protein-coding 561_WT_peak_3206 chr17 43238460 43239036 + 685 NA intron (NM_144608, intron 1 of 3) CpG 484 NM_144608 124790 Hs.56382 NM_144608 HPRD:08129 HEXIM2 - hexamethylene bis-acetamide inducible 2 protein-coding 561_WT_peak_6751 chr7 92314392 92315186 + 683 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) -95081 NR_109929 257415 Hs.18564 NM_152789 HPRD:17557 FAM133B - family with sequence similarity 133, member B protein-coding 561_WT_peak_5286 chr3 150320759 150321718 + 683 NA exon (NM_016275, exon 1 of 6) exon (NM_016275, exon 1 of 6) 172 NM_016275 51714 Hs.369052 NM_016275 HPRD:07446 SELT - selenoprotein T protein-coding 561_WT_peak_5668 chr5 5523177 5523525 + 683 NA Intergenic MER41C|LTR|ERV1 100565 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongator complex ELL subunit 1 protein-coding 561_WT_peak_4097 chr2 64252887 64253233 + 683 NA Intergenic Intergenic -6846 NM_016516 51542 Hs.48499 NM_016516 HPRD:10302 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L vacuolar protein sorting 54 homolog (S. cerevisiae) protein-coding 561_WT_peak_2699 chr16 12009750 12010203 + 670 NA promoter-TSS (NM_001130006) promoter-TSS (NM_001130006) -151 NM_002094 2935 Hs.528780 NM_002094 HPRD:00753 GSPT1 551G9.2|ETF3A|GST1|eRF3a G1 to S phase transition 1 protein-coding 561_WT_peak_2606 chr15 91204550 91204902 + 666 NA intron (NR_120371, intron 2 of 2) MER44A|DNA|TcMar-Tigger 1261 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LOC101929765 - uncharacterized LOC101929765 ncRNA 561_WT_peak_534 chr1 153643258 153643500 + 662 NA intron (NM_001267809, intron 1 of 13) CpG 125 NM_001267809 3608 Hs.75117 NM_004515 HPRD:04419 ILF2 NF45|PRO3063 interleukin enhancer binding factor 2 protein-coding 561_WT_peak_534-2 chr1 153643567 153643949 + 662 NA promoter-TSS (NM_004515) promoter-TSS (NM_004515) -254 NM_004515 3608 Hs.75117 NM_004515 HPRD:04419 ILF2 NF45|PRO3063 interleukin enhancer binding factor 2 protein-coding 561_WT_peak_1198 chr11 8625479 8625854 + 661 NA Intergenic Intergenic -9830 NM_001289058 65975 Hs.501833 NM_030906 HPRD:09642 STK33 - serine/threonine kinase 33 protein-coding 561_WT_peak_6145 chr6 26123082 26124739 + 660 NA promoter-TSS (NM_003512) promoter-TSS (NM_003512) 222 NM_003526 8347 Hs.658713 NM_003526 HIST1H2BC H2B.1|H2B/l|H2BFL|dJ221C16.3 histone cluster 1, H2bc protein-coding 561_WT_peak_3028 chr17 8022200 8022685 + 655 NA promoter-TSS (NM_001165960) promoter-TSS (NM_001165960) -208 NM_001165960 59344 Hs.232770 NM_021628 HPRD:06231 ALOXE3 ARCI3|E-LOX|eLOX-3|eLOX3 arachidonate lipoxygenase 3 protein-coding 561_WT_peak_6210 chr6 27721066 27721424 + 649 NA Intergenic tRNA-Val-GTY|tRNA|tRNA -8278 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 561_WT_peak_2211 chr14 52818807 52819506 + 646 NA Intergenic Intergenic 38140 NM_000956 5732 Hs.2090 NM_000956 HPRD:08905 PTGER2 EP2 prostaglandin E receptor 2 (subtype EP2), 53kDa protein-coding 561_WT_peak_4093 chr2 63815775 63816307 + 643 NA promoter-TSS (NM_001199112) promoter-TSS (NM_001199112) -174 NM_015910 51057 Hs.414952 NM_015910 HPRD:14228 WDPCP BBS15|C2orf86|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 561_WT_peak_480 chr1 148766365 148767119 + 639 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) -39273 NM_001144032 730262 NM_001144032 PPIAL4E COAS2 peptidylprolyl isomerase A (cyclophilin A)-like 4E protein-coding 561_WT_peak_7498 chrX 9281328 9281631 + 634 NA Intergenic L1ME3A|LINE|L1 -149856 NM_001139468 6907 Hs.495656 NM_005647 HPRD:02183 TBL1X EBI|SMAP55|TBL1 transducin (beta)-like 1X-linked protein-coding 561_WT_peak_2114 chr14 21081308 21082118 + 626 NA Intergenic Intergenic -22731 NM_001024822 493901 Hs.729466 NM_001024822 HPRD:18667 RNASE12 HEL-S-85p|RAI1 ribonuclease, RNase A family, 12 (non-active) protein-coding 561_WT_peak_1905 chr12 123011049 123011611 + 624 NA promoter-TSS (NM_014708) promoter-TSS (NM_014708) 230 NR_036434 65117 Hs.432996 NM_023012 HPRD:13342 RSRC2 - arginine/serine-rich coiled-coil 2 protein-coding 561_WT_peak_3891 chr19 54641379 54641826 + 622 NA 5' UTR (NM_014516, exon 1 of 18) 5' UTR (NM_014516, exon 1 of 18) 166 NM_014516 4849 Hs.343571 NM_014516 HPRD:05368 CNOT3 LENG2|NOT3|NOT3H CCR4-NOT transcription complex, subunit 3 protein-coding 561_WT_peak_658 chr1 185389834 185390300 + 613 NA Intergenic Intergenic -85896 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule-associated protein 1 light chain 3 beta pseudogene pseudo 561_WT_peak_4736 chr21 9825474 9825862 + 607 NA promoter-TSS (NR_037421) promoter-TSS (NR_037421) -164 NR_037421 100500862 NR_037421 MIR3648-1 MIR3648 microRNA 3648-1 ncRNA 561_WT_peak_5111 chr3 50329526 50330125 + 605 NA TTS (NM_001200032) TTS (NM_001200032) 201 NM_006764 7866 Hs.315177 NM_006764 HPRD:04101 IFRD2 IFNRP|SKMc15|SM15 interferon-related developmental regulator 2 protein-coding 561_WT_peak_1880 chr12 120729177 120730311 + 597 NA Intergenic Intergenic -10380 NM_012240 23409 Hs.50861 NM_012240 HPRD:06837 SIRT4 SIR2L4 sirtuin 4 protein-coding 561_WT_peak_62 chr1 11968081 11970191 + 596 NA Intergenic MLT1J|LTR|ERVL-MaLR 17349 NM_138346 90231 Hs.520094 NM_138346 HPRD:14576 KIAA2013 - KIAA2013 protein-coding 561_WT_peak_3153 chr17 37310556 37310961 + 595 NA Intergenic tRNA-Cys-TGY|tRNA|tRNA -2856 NM_020405 57125 Hs.125036 NM_020405 HPRD:08439 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 561_WT_peak_3999 chr2 27434997 27435769 + 593 NA promoter-TSS (NM_021095) promoter-TSS (NM_021095) 164 NM_001170795 51374 Hs.9527 NM_016085 HPRD:16652 ATRAID APR--3|APR-3|APR3|C2orf28|PRO240|p18 all-trans retinoic acid-induced differentiation factor protein-coding 561_WT_peak_1125 chr10 103227149 103227432 + 585 NA intron (NM_003939, intron 2 of 13) intron (NM_003939, intron 2 of 13) 113500 NM_033637 8945 Hs.643802 NM_003939 HPRD:04596 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 561_WT_peak_6265 chr6 30582736 30584001 + 584 NA intron (NM_002714, intron 2 of 19).6 intron (NM_002714, intron 2 of 19).6 1716 NM_002714 5514 Hs.106019 NM_002714 HPRD:04797 PPP1R10 CAT53|FB19|PNUTS|PP1R10|R111|p99 protein phosphatase 1, regulatory subunit 10 protein-coding 561_WT_peak_5314 chr3 169489826 169490237 + 575 NA promoter-TSS (NR_033703) promoter-TSS (NR_033703) -822 NM_018657 55892 Hs.507025 NM_018657 HPRD:06920 MYNN OSZF|ZBTB31|ZNF902 myoneurin protein-coding 561_WT_peak_3583 chr19 3985009 3985488 + 571 NA intron (NM_001961, intron 1 of 14) CpG 213 NM_001961 1938 Hs.515070 NM_001961 HPRD:00561 EEF2 EEF-2|EF-2|EF2|SCA26 eukaryotic translation elongation factor 2 protein-coding 561_WT_peak_4912 chr22 38901698 38903175 + 571 NA promoter-TSS (NM_006386) promoter-TSS (NM_006386) -91 NM_001098504 10521 Hs.528305 NM_006386 HPRD:10532 DDX17 P72|RH70 DEAD (Asp-Glu-Ala-Asp) box helicase 17 protein-coding 561_WT_peak_3440 chr18 12948064 12948878 + 570 NA intron (NM_001013437, intron 1 of 8) CpG 488 NM_001013437 81929 Hs.301048 NM_031216 HPRD:15319 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1-like (S. cerevisiae) protein-coding 561_WT_peak_6173 chr6 26473679 26474252 + 569 NA intron (NR_038992, intron 3 of 3) intron (NR_038992, intron 3 of 3) 8772 NR_038992 285819 Hs.575357 NR_038992 LOC285819 - uncharacterized LOC285819 ncRNA 561_WT_peak_3036 chr17 8090120 8091287 + 567 NA TTS (NM_017622) TTS (NM_017622) 440 NR_039746 100616406 NR_039746 MIR4521 - microRNA 4521 ncRNA 561_WT_peak_199 chr1 41157242 41157996 + 567 NA promoter-TSS (NM_001142590) promoter-TSS (NM_001142590) -61 NM_001142590 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y, gamma protein-coding 561_WT_peak_6866-2 chr7 139025778 139026289 + 565 NA 5' UTR (NM_001244584, exon 1 of 11) 5' UTR (NM_001244584, exon 1 of 11) 155 NM_001244584 100996928 Hs.731488 NM_001244584 C7orf55-LUC7L2 - C7orf55-LUC7L2 readthrough protein-coding 561_WT_peak_2733 chr16 22308261 22309083 + 565 NA promoter-TSS (NM_001258034) promoter-TSS (NM_001258034) -24 NM_018119 55718 Hs.460298 NM_018119 HPRD:15155 POLR3E RPC5|SIN polymerase (RNA) III (DNA directed) polypeptide E (80kD) protein-coding 561_WT_peak_6866 chr7 139025246 139025701 + 565 NA promoter-TSS (NM_001244584) promoter-TSS (NM_001244584) 277 NR_073059 154791 Hs.718441 NM_197964 HPRD:13714 C7orf55 FMC1 chromosome 7 open reading frame 55 protein-coding 561_WT_peak_6801 chr7 104653026 104654819 + 564 NA promoter-TSS (NM_018682) promoter-TSS (NM_018682) 666 NR_024586 100216545 Hs.631150 NR_024586 KMT2E-AS1 - KMT2E antisense RNA 1 (head to head) ncRNA 561_WT_peak_833 chr1 245133977 245134884 + 562 NA promoter-TSS (NR_111907) promoter-TSS (NR_111907) -259 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 561_WT_peak_6328 chr6 42750411 42751853 + 559 NA Intergenic CpG -37248 NM_003192 6903 Hs.75064 NM_003192 HPRD:04276 TBCC CFC tubulin folding cofactor C protein-coding 561_WT_peak_5086 chr3 45730309 45730963 + 552 NA promoter-TSS (NM_014016) promoter-TSS (NM_014016) -118 NM_014016 22908 Hs.156509 NM_014016 HPRD:07587 SACM1L SAC1 SAC1 suppressor of actin mutations 1-like (yeast) protein-coding 561_WT_peak_452 chr1 145968822 145969576 + 551 NA intron (NR_104217, intron 2 of 17).2 intron (NR_104217, intron 2 of 17).2 -23722 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 561_WT_peak_3996 chr2 27273506 27274476 + 551 NA promoter-TSS (NM_021831) promoter-TSS (NM_021831) -500 NM_021831 60509 Hs.138207 NM_021831 HPRD:07968 AGBL5 CCP5 ATP/GTP binding protein-like 5 protein-coding 561_WT_peak_1736 chr12 57913863 57914332 + 546 NA intron (NM_001195055, intron 1 of 3) intron (NM_001195055, intron 1 of 3) 203 NM_001195056 1649 Hs.505777 NM_004083 HPRD:00529 DDIT3 CEBPZ|CHOP|CHOP-10|CHOP10|GADD153 DNA-damage-inducible transcript 3 protein-coding 561_WT_peak_7262 chr9 42019202 42019905 + 537 NA promoter-TSS (NR_003670) promoter-TSS (NR_003670) 31 NR_003670 654466 Hs.536967 NM_001039113 KGFLP2 - keratinocyte growth factor-like protein 2 pseudo 561_WT_peak_4143 chr2 73461250 73461766 + 537 NA non-coding (NR_029403, exon 1 of 11) non-coding (NR_029403, exon 1 of 11) 144 NM_006429 10574 Hs.368149 NM_006429 HPRD:06896 CCT7 CCTETA|CCTH|NIP7-1|TCP1ETA chaperonin containing TCP1, subunit 7 (eta) protein-coding 561_WT_peak_4648 chr20 44563256 44563773 + 536 NA intron (NM_022104, intron 1 of 16) CpG 197 NM_022104 63935 Hs.472856 NM_022104 HPRD:12779 PCIF1 C20orf67|PPP1R121 PDX1 C-terminal inhibiting factor 1 protein-coding 561_WT_peak_3077 chr17 21117130 21117848 + 535 NA non-coding (NR_024547, exon 1 of 3) non-coding (NR_024547, exon 1 of 3) 419 NR_024547 8834 Hs.592945 NM_003876 TMEM11 C17orf35|PM1|PMI transmembrane protein 11 protein-coding 561_WT_peak_2444 chr15 41952528 41953285 + 530 NA intron (NM_001080541, intron 1 of 22) CpG 296 NM_001080541 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MGA, MAX dimerization protein protein-coding 561_WT_peak_3268 chr17 56708638 56709335 + 528 NA intron (NM_198393, intron 2 of 32) intron (NM_198393, intron 2 of 32) 60430 NM_001201457 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113 testis expressed 14 protein-coding 561_WT_peak_7601 chrX 108297417 108297761 + 527 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA 317819 NR_110652 101928358 Hs.722300 NR_110652 LOC101928358 - uncharacterized LOC101928358 ncRNA 561_WT_peak_7055 chr8 74258758 74259179 + 524 NA intron (NR_125388, intron 1 of 5) L1MB5|LINE|L1 9728 NR_125388 101926926 Hs.640090 NR_125388 LOC101926926 - uncharacterized LOC101926926 ncRNA 561_WT_peak_6305 chr6 35995210 35995552 + 524 NA promoter-TSS (NM_001315) promoter-TSS (NM_001315) -73 NM_001315 1432 Hs.485233 NM_001315 HPRD:02619 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 561_WT_peak_2010 chr13 41768473 41768910 + 522 NA promoter-TSS (NM_032138) promoter-TSS (NM_032138) 11 NM_032138 84078 Hs.63841 NM_032138 KBTBD7 - kelch repeat and BTB (POZ) domain containing 7 protein-coding 561_WT_peak_4282 chr2 122288267 122288952 + 519 NA TTS (NR_023343) TTS (NR_023343) 153 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 561_WT_peak_2843 chr16 50840438 50840745 + 517 NA Intergenic Intergenic 64562 NM_001042412 1540 Hs.578973 NM_015247 HPRD:05427 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 cylindromatosis (turban tumor syndrome) protein-coding 561_WT_peak_3817 chr19 47354072 47354477 + 516 NA promoter-TSS (NM_021575) promoter-TSS (NM_021575) -22 NM_004069 1175 Hs.119591 NM_004069 HPRD:03762 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor-related protein complex 2, sigma 1 subunit protein-coding 561_WT_peak_3083 chr17 25563818 25564113 + 506 NA Intergenic Intergenic 57057 NR_039748 100616277 NR_039748 miRBase:MI0016889 MIR4522 - microRNA 4522 ncRNA 561_WT_peak_495 chr1 149812897 149814820 + 506 NA TTS (NM_003516).2 TTS (NM_003516).2 460 NM_003516 8337 Hs.530461 NM_003516 HIST2H2AA3 H2A|H2A.2|H2A/O|H2A/q|H2AFO|H2a-615|HIST2H2AA histone cluster 2, H2aa3 protein-coding 561_WT_peak_2981 chr17 2414870 2415250 + 506 NA 5' UTR (NM_024086, exon 1 of 10) 5' UTR (NM_024086, exon 1 of 10) 140 NM_024086 79066 Hs.632237 NM_024086 HPRD:14556 METTL16 METT10D methyltransferase like 16 protein-coding 561_WT_peak_2386 chr14 104028761 104029368 + 500 NA promoter-TSS (NM_004873) promoter-TSS (NM_004873) 87 NM_001015048 9529 Hs.5443 NM_004873 HPRD:04862 BAG5 BAG-5 BCL2-associated athanogene 5 protein-coding 561_WT_peak_3115 chr17 30676758 30677626 + 498 NA promoter-TSS (NM_003457) promoter-TSS (NM_003457) 35 NM_001032293 7756 Hs.500775 NM_003457 HPRD:04576 ZNF207 BuGZ zinc finger protein 207 protein-coding 561_WT_peak_1279 chr11 47789164 47789601 + 497 NA promoter-TSS (NM_015308) promoter-TSS (NM_015308) -389 NM_015308 23360 Hs.6834 NM_015308 HPRD:10996 FNBP4 FBP30 formin binding protein 4 protein-coding 561_WT_peak_209 chr1 45187047 45187965 + 497 NA intron (NM_001145636, intron 6 of 11) U5|snRNA|snRNA -17984 NM_006845 11004 Hs.720061 NM_006845 HPRD:05172 KIF2C CT139|KNSL6|MCAK kinesin family member 2C protein-coding 561_WT_peak_188 chr1 38478010 38478465 + 496 NA promoter-TSS (NM_016037) promoter-TSS (NM_016037) -147 NM_016037 51118 Hs.472038 NM_016037 HPRD:16711 UTP11L CGI94 UTP11-like, U3 small nucleolar ribonucleoprotein (yeast) protein-coding 561_WT_peak_2268 chr14 69282793 69283635 + 491 NA Intergenic CpG -20254 NM_001244701 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 561_WT_peak_1414 chr11 75110491 75110984 + 490 NA promoter-TSS (NR_000005) promoter-TSS (NR_000005) 202 NM_001260507 6188 Hs.546286 NM_001005 HPRD:10941 RPS3 S3 ribosomal protein S3 protein-coding 561_WT_peak_2378 chr14 102783284 102783630 + 490 NA promoter-TSS (NM_001267827) promoter-TSS (NM_001267827) -257 NM_001267827 55778 Hs.743359 NM_018335 HPRD:18532 ZNF839 C14orf131 zinc finger protein 839 protein-coding 561_WT_peak_3303 chr17 62501561 62502559 + 489 NA intron (NM_004396, intron 1 of 12) CpG 424 NM_004396 1655 Hs.279806 NM_004396 HPRD:01615 DDX5 G17P1|HLR1|HUMP68|p68 DEAD (Asp-Glu-Ala-Asp) box helicase 5 protein-coding 561_WT_peak_3156 chr17 37617407 37617900 + 488 NA promoter-TSS (NM_016507) promoter-TSS (NM_016507) -111 NM_016507 51755 Hs.416108 NM_015083 HPRD:10849 CDK12 CRK7|CRKR|CRKRS cyclin-dependent kinase 12 protein-coding 561_WT_peak_210 chr1 45195961 45196982 + 488 NA Intergenic AluSx4|SINE|Alu -9019 NM_006845 11004 Hs.720061 NM_006845 HPRD:05172 KIF2C CT139|KNSL6|MCAK kinesin family member 2C protein-coding 561_WT_peak_4033 chr2 39443909 39444476 + 488 NA intron (NM_001009565, intron 2 of 7) intron (NM_001009565, intron 2 of 7) 12481 NM_001009565 344387 Hs.403201 NM_001009565 HPRD:16698 CDKL4 - cyclin-dependent kinase-like 4 protein-coding 561_WT_peak_4432 chr2 201728737 201729727 + 487 NA promoter-TSS (NM_001162407) promoter-TSS (NM_001162407) 52 NM_001162407 1195 Hs.433732 NM_004071 HPRD:09058 CLK1 CLK|CLK/STY|STY CDC-like kinase 1 protein-coding 561_WT_peak_2882 chr16 69466007 69466295 + 487 NA intron (NM_030579, intron 1 of 4) MER47A|DNA|TcMar-Tigger 7653 NM_030579 80777 Hs.461131 NM_030579 HPRD:13106 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B (outer mitochondrial membrane) protein-coding 561_WT_peak_2662 chr16 2801877 2802824 + 487 NA promoter-TSS (NM_016333) promoter-TSS (NM_016333) 20 NM_016333 23524 Hs.433343 NM_016333 HPRD:06913 SRRM2 300-KD|CWF21|Cwc21|SRL300|SRm300 serine/arginine repetitive matrix 2 protein-coding 561_WT_peak_1571 chr12 8113257 8113594 + 485 NA Intergenic Intergenic -24533 NM_006931 6515 Hs.419240 NM_006931 HPRD:00686 SLC2A3 GLUT3 solute carrier family 2 (facilitated glucose transporter), member 3 protein-coding 561_WT_peak_4683 chr20 49547832 49548671 + 485 NA promoter-TSS (NM_001282531) promoter-TSS (NM_001282531) -724 NM_015339 23394 Hs.293736 NM_015339 HPRD:09793 ADNP ADNP1|MRD28 activity-dependent neuroprotector homeobox protein-coding 561_WT_peak_2230 chr14 58706467 58706830 + 482 NA Intergenic tRNA-Lys-AAG|tRNA|tRNA -4875 NM_002788 5684 Hs.558799 NM_002788 HPRD:01463 PSMA3 HC8|PSC3 proteasome (prosome, macropain) subunit, alpha type, 3 protein-coding 561_WT_peak_1940 chr13 20437997 20439133 + 479 NA promoter-TSS (NM_001142684) promoter-TSS (NM_001142684) -789 NM_001039649 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger, MYM-type 5 protein-coding 561_WT_peak_5129 chr3 56716531 56717237 + 477 NA exon (NM_001112736, exon 1 of 24) exon (NM_001112736, exon 1 of 24) 251 NM_001112736 23272 Hs.116877 NM_015224 HPRD:10183 FAM208A C3orf63|RAP140|se89-1 family with sequence similarity 208, member A protein-coding 561_WT_peak_5106 chr3 49130996 49131923 + 477 NA promoter-TSS (NM_017730) promoter-TSS (NM_017730) 45 NM_017730 54870 Hs.297389 NM_017730 HPRD:13372 QRICH1 - glutamine-rich 1 protein-coding 561_WT_peak_6176 chr6 26521372 26521642 + 477 NA promoter-TSS (NR_026790) promoter-TSS (NR_026790) -427 NR_026790 493812 Hs.272939 NR_026790 ENSG00000228223 HCG11 bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 561_WT_peak_6485 chr6 136610145 136612027 + 475 NA promoter-TSS (NM_014739) promoter-TSS (NM_014739) -97 NM_001077441 9774 Hs.486542 NM_014739 HPRD:16544 BCLAF1 BTF|bK211L9.1 BCL2-associated transcription factor 1 protein-coding 561_WT_peak_2894 chr16 70557248 70558185 + 467 NA promoter-TSS (NM_012426) promoter-TSS (NM_012426) 25 NM_012426 23450 Hs.514435 NM_012426 SF3B3 RSE1|SAP130|SF3b130|STAF130 splicing factor 3b, subunit 3, 130kDa protein-coding 561_WT_peak_4444 chr2 203130164 203130926 + 466 NA promoter-TSS (NM_015934) promoter-TSS (NM_015934) 30 NM_015934 51602 Hs.471104 NM_015934 HPRD:11036 NOP58 NOP5|NOP5/NOP58 NOP58 ribonucleoprotein protein-coding 561_WT_peak_6956 chr8 28747412 28748205 + 464 NA promoter-TSS (NM_001172562) promoter-TSS (NM_001172562) -103 NM_001135726 79618 Hs.563560 NM_024567 HPRD:07964 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 561_WT_peak_7137 chr8 125462529 125463070 + 464 NA promoter-TSS (NM_017956) promoter-TSS (NM_017956) -249 NM_017956 55039 Hs.9925 NM_017956 HPRD:07947 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog (S. cerevisiae) protein-coding 561_WT_peak_3772 chr19 41770130 41770843 + 461 NA exon (NM_007040, exon 1 of 15) exon (NM_007040, exon 1 of 15) 259 NM_007040 11100 Hs.155218 NM_007040 HPRD:10428 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 protein-coding 561_WT_peak_2569 chr15 79165269 79166269 + 459 NA intron (NM_001265604, intron 1 of 11) CpG 438 NM_001265605 10933 Hs.374503 NM_006791 HPRD:09532 MORF4L1 Eaf3|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 561_WT_peak_1566 chr12 7053570 7054166 + 459 NA intron (NM_138425, intron 2 of 2) CpG-5081 665 NM_138425 113246 Hs.405913 NM_138425 HPRD:13609 C12orf57 C10|GRCC10|TEMTYS chromosome 12 open reading frame 57 protein-coding 561_WT_peak_4776 chr21 34914681 34915757 + 458 NA promoter-TSS (NM_175085) promoter-TSS (NM_175085) -21 NM_001136006 2618 Hs.473648 NM_000819 HPRD:00716 GART AIRS|GARS|GARTF|PAIS|PGFT|PRGS phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding 561_WT_peak_6147 chr6 26156431 26159462 + 456 NA promoter-TSS (NM_138720) promoter-TSS (NM_138720) -403 NM_021063 3017 Hs.591797 NM_021063 HPRD:07535 HIST1H2BD H2B.1B|H2B/b|H2BFB|HIRIP2|dJ221C16.6 histone cluster 1, H2bd protein-coding 561_WT_peak_5495 chr4 69215197 69215911 + 454 NA 5' UTR (NM_133370, exon 1 of 16) 5' UTR (NM_133370, exon 1 of 16) 270 NM_133370 91746 Hs.175955 NM_133370 HPRD:11689 YTHDC1 YT521|YT521-B YTH domain containing 1 protein-coding 561_WT_peak_1957 chr13 25199442 25199803 + 454 NA Intergenic LTR54|LTR|ERV1 45276 NR_002815 374491 Hs.406779 NR_002815 TPTE2P6 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 pseudo 561_WT_peak_2228 chr14 57735296 57736160 + 453 NA promoter-TSS (NM_006544) promoter-TSS (NM_006544) -111 NM_006544 10640 Hs.743987 NM_006544 HPRD:07258 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 561_WT_peak_676 chr1 201123565 201124015 + 452 NA promoter-TSS (NM_016456) promoter-TSS (NM_016456) -107 NM_001288568 252839 Hs.181444 NM_016456 HPRD:15542 TMEM9 TMEM9A transmembrane protein 9 protein-coding 561_WT_peak_1733 chr12 57118778 57119324 + 451 NA promoter-TSS (NR_045277) promoter-TSS (NR_045277) 15 NR_045277 4666 Hs.505735 NM_005594 HPRD:03137 NACA NACA1|skNAC nascent polypeptide-associated complex alpha subunit protein-coding 561_WT_peak_4638 chr20 42086382 42087296 + 450 NA intron (NR_034009, intron 1 of 6) CpG 335 NR_034009 6431 Hs.725336 NM_006275 HPRD:09054 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine/arginine-rich splicing factor 6 protein-coding 561_WT_peak_3119 chr17 33288013 33288750 + 449 NA promoter-TSS (NM_052857) promoter-TSS (NM_052857) 147 NM_006584 10693 Hs.73072 NM_006584 HPRD:09873 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1, subunit 6B (zeta 2) protein-coding 561_WT_peak_3338 chr17 73179198 73179573 + 449 NA promoter-TSS (NM_006937) promoter-TSS (NM_006937) -287 NM_006937 6613 Hs.380973 NM_006937 HPRD:04332 SUMO2 HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A small ubiquitin-like modifier 2 protein-coding 561_WT_peak_3790 chr19 45256643 45258031 + 449 NA intron (NM_005178, intron 2 of 8) intron (NM_005178, intron 2 of 8) -4577 NR_107052 102465879 NR_107052 MIR8085 hsa-mir-8085 microRNA 8085 ncRNA 561_WT_peak_6634 chr7 32529729 32530155 + 448 NA promoter-TSS (NM_012322) promoter-TSS (NM_012322) 81 NM_012322 23658 Hs.424908 NM_012322 HPRD:06285 LSM5 YER146W LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 561_WT_peak_7110 chr8 110345987 110346590 + 447 NA promoter-TSS (NM_032869) promoter-TSS (NM_032869) 62 NM_032869 84955 Hs.380291 NM_032869 HPRD:16200 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 561_WT_peak_908 chr10 22518324 22518644 + 447 NA Intergenic tRNA-Asn-AAC|tRNA|tRNA -19572 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus-like nucleoprotein 1 protein-coding 561_WT_peak_7509 chrX 18692903 18693228 + 447 NA Intergenic tRNA-Val-GTA|tRNA|tRNA -2842 NM_000330 6247 Hs.715725 NM_000330 HPRD:02426 RS1 RS|XLRS1 retinoschisin 1 protein-coding 561_WT_peak_5548 chr4 89744833 89745205 + 446 NA promoter-TSS (NM_001265580) promoter-TSS (NM_001265580) -507 NM_001265578 10144 Hs.97270 NM_014883 HPRD:10944 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13, member A protein-coding 561_WT_peak_2270 chr14 70233559 70234739 + 445 NA non-coding (NR_029378, exon 1 of 1) non-coding (NR_029378, exon 1 of 1) 281 NR_029378 100289511 Hs.729250 NR_029378 LOC100289511 - uncharacterized LOC100289511 ncRNA 561_WT_peak_3674 chr19 17326014 17326510 + 444 NA exon (NM_018467, exon 1 of 8) exon (NM_018467, exon 1 of 8) 107 NM_018467 55850 Hs.16187 NM_018467 HPRD:11299 USE1 P31|SLT1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) protein-coding 561_WT_peak_4128 chr2 70313113 70314227 + 443 NA promoter-TSS (NM_006196) promoter-TSS (NM_006196) 477 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 561_WT_peak_329 chr1 94312799 94313322 + 443 NA promoter-TSS (NM_001261408) promoter-TSS (NM_001261408) -354 NM_001261408 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 561_WT_peak_3132 chr17 34206756 34207283 + 443 NA intron (NM_001278736, intron 1 of 3) intron (NM_001278736, intron 1 of 3) 358 NM_001278736 6352 Hs.514821 NM_002985 HPRD:01751 CCL5 D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP chemokine (C-C motif) ligand 5 protein-coding 561_WT_peak_1222 chr11 16759518 16760598 + 440 NA promoter-TSS (NM_014267) promoter-TSS (NM_014267) -90 NM_014267 10944 Hs.645792 NM_014267 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 561_WT_peak_1716 chr12 54674506 54675139 + 440 NA promoter-TSS (NM_012117) promoter-TSS (NM_012117) 289 NR_002944 664709 Hs.534822 NR_002944 HNRNPA1P10 HNRPA1L-2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudo 561_WT_peak_6307 chr6 36562008 36562577 + 440 NA intron (NR_036610, intron 1 of 6) CpG 202 NM_003017 6428 Hs.405144 NM_003017 SRSF3 SFRS3|SRp20 serine/arginine-rich splicing factor 3 protein-coding 561_WT_peak_2644 chr16 686603 687032 + 440 NA promoter-TSS (NM_032366) promoter-TSS (NM_032366) -451 NR_109979 84326 Hs.239500 NM_032366 HPRD:17482 C16orf13 - chromosome 16 open reading frame 13 protein-coding 561_WT_peak_6329 chr6 42846999 42847989 + 439 NA promoter-TSS (NM_198486) promoter-TSS (NM_198486) -177 NM_198486 285855 Hs.520133 NM_198486 HPRD:18000 RPL7L1 dJ475N16.4 ribosomal protein L7-like 1 protein-coding 561_WT_peak_2135 chr14 23398759 23399140 + 439 NA promoter-TSS (NM_001282953) promoter-TSS (NM_001282953) 131 NR_110002 101926933 Hs.727321 NR_110002 ENSG00000257285 LOC101926933 - uncharacterized LOC101926933 ncRNA 561_WT_peak_7533 chrX 47093161 47093500 + 439 NA intron (NM_004651, intron 1 of 20) intron (NM_004651, intron 1 of 20) 1016 NM_004651 8237 Hs.171501 NM_004651 HPRD:02081 USP11 UHX1 ubiquitin specific peptidase 11 protein-coding 561_WT_peak_750 chr1 225654529 225654995 + 435 NA Intergenic Intergenic -38205 NM_194442 3930 Hs.435166 NM_002296 HPRD:02488 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 561_WT_peak_217 chr1 45284971 45285845 + 434 NA TTS (NM_001166292) TTS (NM_001166292) 11254 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB (POZ) domain containing 19 protein-coding 561_WT_peak_6178 chr6 26532995 26533348 + 434 NA Intergenic tRNA-Thr-ACY_|tRNA|tRNA -5401 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 561_WT_peak_4043 chr2 43037370 43038264 + 434 NA Intergenic Intergenic -18066 NM_012205 23498 Hs.368805 NM_012205 HPRD:05158 HAAO 3-HAO|HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 561_WT_peak_443 chr1 145399125 145399447 + 433 NA intron (NM_001039703, intron 68 of 85) tRNA-Glu-GAG_|tRNA|tRNA -13905 NM_213653 148738 Hs.632436 NM_145277 HPRD:10521 HFE2 HFE2A|HJV|JH|RGMC hemochromatosis type 2 (juvenile) protein-coding 561_WT_peak_1109 chr10 97889464 97890603 + 433 NA intron (NM_001278525, intron 1 of 5) CpG 220 NM_001278525 9849 Hs.600823 NM_014803 ZNF518A ZNF518 zinc finger protein 518A protein-coding 561_WT_peak_5346 chr3 185655027 185655761 + 432 NA intron (NM_004593, intron 1 of 8) CpG 530 NM_001243879 6434 Hs.533122 NM_004593 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog (Drosophila) protein-coding 561_WT_peak_2520 chr15 66161240 66161603 + 432 NA promoter-TSS (NM_004663) promoter-TSS (NM_004663) -376 NM_001206836 8766 Hs.321541 NM_004663 HPRD:05715 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 561_WT_peak_7643 chrY 2802993 2804221 + 431 NA promoter-TSS (NM_001145275) promoter-TSS (NM_001145275) 89 NM_003411 7544 Hs.522845 NM_003411 HPRD:02466 ZFY ZNF911 zinc finger protein, Y-linked protein-coding 561_WT_peak_1441 chr11 85463858 85464338 + 430 NA intron (NM_001289608, intron 1 of 18) intron (NM_001289608, intron 1 of 18) 5014 NM_001162951 54843 Hs.369520 NM_032379 HPRD:10260 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin-like 2 protein-coding 561_WT_peak_6435 chr6 111279459 111280188 + 429 NA promoter-TSS (NM_138408) promoter-TSS (NM_138408) 60 NM_138408 112495 Hs.418520 NM_138408 HPRD:12886 GTF3C6 C6orf51|TFIIIC35|bA397G5.3 general transcription factor IIIC, polypeptide 6, alpha 35kDa protein-coding 561_WT_peak_4263 chr2 113032942 113033661 + 428 NA 5' UTR (NM_198581, exon 1 of 12) 5' UTR (NM_198581, exon 1 of 12) 123 NM_198581 376940 Hs.190477 NM_198581 HPRD:15698 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 561_WT_peak_2466 chr15 45490644 45491213 + 428 NA intron (NM_138356, intron 2 of 7) intron (NM_138356, intron 2 of 7) 2445 NM_138356 90525 Hs.310399 NM_138356 HPRD:14272 SHF - Src homology 2 domain containing F protein-coding 561_WT_peak_2402 chr15 22461008 22461732 + 428 NA Intergenic Intergenic 47908 NR_028067 390539 Hs.666555 NR_028067 ENSG00000259435 OR4N3P OR15-2 olfactory receptor, family 4, subfamily N, member 3 pseudogene pseudo 561_WT_peak_4528 chr2 242448000 242448657 + 427 NA promoter-TSS (NM_006374) promoter-TSS (NM_006374) -218 NM_001282308 10494 Hs.516807 NM_006374 HPRD:03770 STK25 SOK1|YSK1 serine/threonine kinase 25 protein-coding 561_WT_peak_4534 chr20 277845 278510 + 425 NA promoter-TSS (NM_033089) promoter-TSS (NM_033089) -27 NM_033089 85364 Hs.28608 NM_033089 HPRD:15701 ZCCHC3 C20orf99 zinc finger, CCHC domain containing 3 protein-coding 561_WT_peak_690 chr1 204475510 204476436 + 424 NA Intergenic Intergenic -9534 NM_001278518 4194 Hs.497492 NM_002393 HPRD:04082 MDM4 HDMX|MDMX|MRP1 MDM4, p53 regulator protein-coding 561_WT_peak_2501 chr15 59225516 59225876 + 422 NA exon (NM_024755, exon 1 of 21) exon (NM_024755, exon 1 of 21) 156 NM_024755 79811 Hs.512932 NM_017968 HPRD:07819 SLTM Met SAFB-like, transcription modulator protein-coding 561_WT_peak_3193 chr17 41445080 41445507 + 422 NA Intergenic U2|snRNA|snRNA 20973 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 561_WT_peak_6319 chr6 41903836 41904342 + 421 NA intron (NM_001287434, intron 4 of 4) intron (NM_001287434, intron 4 of 4) 5497 NM_001760 896 Hs.534307 NM_001760 HPRD:00452 CCND3 - cyclin D3 protein-coding 561_WT_peak_1717 chr12 54718942 54719270 + 420 NA intron (NM_001271734, intron 1 of 7) intron (NM_001271734, intron 1 of 7) 232 NM_001271735 22818 Hs.505652 NM_016057 HPRD:16738 COPZ1 COPZ|HSPC181|zeta-COP|zeta1-COP coatomer protein complex, subunit zeta 1 protein-coding 561_WT_peak_605 chr1 167683699 167684188 + 420 NA Intergenic Intergenic -7244 NM_024569 9019 Hs.493919 NM_003953 HPRD:05086 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero-like 1 protein-coding 561_WT_peak_4345 chr2 160568822 160569492 + 418 NA promoter-TSS (NR_110586) promoter-TSS (NR_110586) 189 NM_001282806 64844 Hs.529272 NM_022826 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase protein-coding 561_WT_peak_6965 chr8 29939941 29940662 + 415 NA intron (NM_016127, intron 1 of 5) CpG 423 NM_016127 51669 Hs.521487 NM_016127 HPRD:08651 SARAF FOAP-7|TMEM66|XTP3 store-operated calcium entry-associated regulatory factor protein-coding 561_WT_peak_6627 chr7 26239294 26240357 + 415 NA intron (NM_031243, intron 1 of 11) CpG 588 NM_031243 3181 Hs.487774 NM_002137 HPRD:02526 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 561_WT_peak_3819 chr19 47615240 47616506 + 415 NA intron (NM_015168, intron 1 of 14) CpG-14022 1136 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 561_WT_peak_6724 chr7 75157450 75157763 + 412 NA promoter-TSS (NR_028059) promoter-TSS (NR_028059) -153 NR_028059 5387 Hs.659871 NM_005395 HPRD:17866 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 postmeiotic segregation increased 2 pseudogene 3 pseudo 561_WT_peak_3038 chr17 8124809 8125047 + 410 NA intron (NR_026951, intron 2 of 2) CpG 2433 NR_026951 284029 Hs.121692 NM_173621 HPRD:08755 LINC00324 C17orf44|NCRNA00324 long intergenic non-protein coding RNA 324 ncRNA 561_WT_peak_591 chr1 161493547 161493852 + 410 NA promoter-TSS (NM_002155) promoter-TSS (NM_002155) -337 NM_002155 3310 Hs.654614 NM_002155 HPRD:00775 HSPA6 - heat shock 70kDa protein 6 (HSP70B') protein-coding 561_WT_peak_3038-2 chr17 8125101 8125791 + 410 NA intron (NR_026951, intron 2 of 2) intron (NR_026951, intron 2 of 2) 1915 NR_026951 284029 Hs.121692 NM_173621 HPRD:08755 LINC00324 C17orf44|NCRNA00324 long intergenic non-protein coding RNA 324 ncRNA 561_WT_peak_7168 chr8 135724816 135725915 + 409 NA promoter-TSS (NM_001289394) promoter-TSS (NM_001289394) -73 NM_001174157 57623 Hs.446172 NM_020863 HPRD:11712 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT hook domain containing protein-coding 561_WT_peak_663 chr1 192775029 192775309 + 409 NA Intergenic Intergenic -3000 NM_002923 5997 Hs.78944 NM_002923 HPRD:02917 RGS2 G0S8 regulator of G-protein signaling 2 protein-coding 561_WT_peak_6289 chr6 32937875 32939603 + 407 NA promoter-TSS (NM_001199455).5 promoter-TSS (NM_001199455).5 74 NM_001113182 6046 Hs.75243 NM_005104 HPRD:03326 BRD2 D6S113E|FSH|FSRG1|NAT|RING3|RNF3 bromodomain containing 2 protein-coding 561_WT_peak_1124 chr10 103124552 103124786 + 407 NA intron (NM_003939, intron 1 of 13) U2|snRNA|snRNA 10879 NM_033637 8945 Hs.643802 NM_003939 HPRD:04596 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 561_WT_peak_3843 chr19 49375549 49376292 + 406 NA intron (NM_014330, intron 1 of 2) CpG 271 NM_014330 23645 Hs.631593 NM_014330 HPRD:06572 PPP1R15A GADD34 protein phosphatase 1, regulatory subunit 15A protein-coding 561_WT_peak_3843-2 chr19 49376441 49376670 + 406 NA exon (NM_014330, exon 2 of 3) exon (NM_014330, exon 2 of 3) 906 NM_014330 23645 Hs.631593 NM_014330 HPRD:06572 PPP1R15A GADD34 protein phosphatase 1, regulatory subunit 15A protein-coding 561_WT_peak_2667 chr16 3200473 3200924 + 403 NA Intergenic tRNA-Arg-CGG|tRNA|tRNA 15564 NM_001134655 7760 Hs.115284 NM_004220 HPRD:12224 ZNF213 CR53|ZKSCAN21|ZSCAN53 zinc finger protein 213 protein-coding 561_WT_peak_4737 chr21 9825912 9826356 + 402 NA promoter-TSS (NR_037458) promoter-TSS (NR_037458) -69 NR_037458 100500815 NR_037458 miRBase:MI0016088 MIR3687-1 MIR3687 microRNA 3687-1 ncRNA 561_WT_peak_2516 chr15 65596739 65597563 + 402 NA Intergenic Intergenic -18133 NM_017851 54956 Hs.30634 NM_017851 HPRD:07919 PARP16 ARTD15|C15orf30|pART15 poly (ADP-ribose) polymerase family, member 16 protein-coding 561_WT_peak_445 chr1 145507115 145507873 + 401 NA promoter-TSS (NM_005105) promoter-TSS (NM_005105) -63 NM_005105 9939 Hs.591455 NM_005105 HPRD:05609 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 561_WT_peak_6024 chr5 173043605 173043934 + 401 NA promoter-TSS (NM_001159651) promoter-TSS (NM_001159651) -103 NM_138369 91272 Hs.425091 NM_138369 HPRD:13309 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 561_WT_peak_7538 chrX 48432529 48433336 + 400 NA 5' UTR (NM_006743, exon 1 of 7) 5' UTR (NM_006743, exon 1 of 7) 191 NM_006743 5935 Hs.301404 NM_006743 RBM3 IS1-RNPL|RNPL RNA binding motif (RNP1, RRM) protein 3 protein-coding 561_WT_peak_828 chr1 244997643 244998844 + 399 NA promoter-TSS (NM_198076) promoter-TSS (NM_198076) -396 NM_198076 116228 Hs.411490 NM_198076 HPRD:13307 COX20 FAM36A COX20 cytochrome C oxidase assembly factor protein-coding 561_WT_peak_2945 chr16 87984417 87984861 + 399 NA promoter-TSS (NM_001173539) promoter-TSS (NM_001173539) -399 NM_001173541 54971 Hs.461705 NM_017869 HPRD:16538 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 561_WT_peak_3015 chr17 7386699 7387336 + 398 NA promoter-TSS (NM_000937) promoter-TSS (NM_000937) 551 NM_020899 57659 Hs.35096 NM_020899 HPRD:11693 ZBTB4 KAISO-L1|ZNF903 zinc finger and BTB domain containing 4 protein-coding 561_WT_peak_909 chr10 22540892 22541742 + 396 NA non-coding (NR_038921, exon 1 of 1) non-coding (NR_038921, exon 1 of 1) 316 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 561_WT_peak_5244 chr3 128399456 128400246 + 396 NA Intergenic CpG -30132 NM_002950 6184 Hs.518244 NM_002950 HPRD:01598 RPN1 OST1|RBPH1 ribophorin I protein-coding 561_WT_peak_4949 chr22 42475278 42476057 + 395 NA promoter-TSS (NM_033318) promoter-TSS (NM_033318) -28 NM_033318 91689 Hs.306083 NM_033318 HPRD:12385 SMDT1 C22orf32|DDDD|EMRE|dJ186O1.1 single-pass membrane protein with aspartate-rich tail 1 protein-coding 561_WT_peak_1403 chr11 72145235 72145817 + 395 NA 5' UTR (NM_001258394, exon 1 of 18) 5' UTR (NM_001258394, exon 1 of 18) 198 NM_001258393 81570 Hs.523877 NM_030813 HPRD:11560 CLPB HSP78|SKD3 ClpB caseinolytic peptidase B homolog (E. coli) protein-coding 561_WT_peak_2597 chr15 89877835 89878543 + 395 NA promoter-TSS (NM_001126131) promoter-TSS (NM_001126131) -163 NM_002693 5428 Hs.706868 NM_002693 HPRD:01438 POLG MDP1|MIRAS|MTDPS4A|MTDPS4B|PEO|POLG1|POLGA|SANDO|SCAE polymerase (DNA directed), gamma protein-coding 561_WT_peak_1514 chr11 122933284 122934514 + 394 NA promoter-TSS (NM_006597) promoter-TSS (NM_006597) -856 NM_153201 3312 Hs.180414 NM_006597 HPRD:07205 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock 70kDa protein 8 protein-coding 561_WT_peak_5158 chr3 73160027 73160266 + 393 NA Intergenic U2|snRNA|snRNA 49336 NM_018029 55096 Hs.658858 NM_018029 HPRD:07654 EBLN2 EBLN-2 endogenous Bornavirus-like nucleoprotein 2 protein-coding 561_WT_peak_2009 chr13 41706832 41707138 + 391 NA promoter-TSS (NM_152903) promoter-TSS (NM_152903) -49 NM_152903 89890 Hs.534040 NM_152903 HPRD:13758 KBTBD6 - kelch repeat and BTB (POZ) domain containing 6 protein-coding 561_WT_peak_3556 chr19 1021001 1021762 + 390 NA promoter-TSS (NM_033420) promoter-TSS (NM_033420) -140 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 561_WT_peak_6042 chr5 179050101 179050655 + 390 NA intron (NM_005520, intron 1 of 13) CpG-21533 333 NM_001257293 3187 Hs.604001 NM_005520 HPRD:03021 HNRNPH1 HNRPH|HNRPH1|hnRNPH heterogeneous nuclear ribonucleoprotein H1 (H) protein-coding 561_WT_peak_4032 chr2 39356069 39356443 + 390 NA Intergenic L1MB2|LINE|L1 -8652 NM_005633 6654 Hs.709893 NM_005633 HPRD:01681 SOS1 GF1|GGF1|GINGF|HGF|NS4 son of sevenless homolog 1 (Drosophila) protein-coding 561_WT_peak_101 chr1 24018083 24018774 + 389 NA intron (NM_001199802, intron 1 of 5) CpG 159 NM_001199802 6135 Hs.719951 NM_000975 HPRD:10364 RPL11 DBA7|GIG34|L11 ribosomal protein L11 protein-coding 561_WT_peak_4894 chr22 35795435 35796013 + 389 NA promoter-TSS (NM_006739) promoter-TSS (NM_006739) -392 NM_006739 4174 Hs.517582 NM_006739 HPRD:04075 MCM5 CDC46|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 561_WT_peak_3246 chr17 48796410 48797327 + 389 NA promoter-TSS (NM_016424) promoter-TSS (NM_016424) -58 NM_016424 51747 Hs.130293 NM_006107 HPRD:16759 LUC7L3 CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A LUC7-like 3 (S. cerevisiae) protein-coding 561_WT_peak_262 chr1 62901518 62902125 + 388 NA promoter-TSS (NM_001017415) promoter-TSS (NM_001017415) -154 NM_001017415 7398 Hs.35086 NM_003368 HPRD:04593 USP1 UBP ubiquitin specific peptidase 1 protein-coding 561_WT_peak_2605 chr15 91201068 91201363 + 386 NA intron (NR_120372, intron 2 of 3) MER44A|DNA|TcMar-Tigger -2250 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LOC101929765 - uncharacterized LOC101929765 ncRNA 561_WT_peak_2368 chr14 102276098 102276789 + 386 NA intron (NM_178586, intron 1 of 12) intron (NM_178586, intron 1 of 12) 303 NM_178587 5527 Hs.368264 NM_002719 HPRD:03385 PPP2R5C B56G|PR61G protein phosphatase 2, regulatory subunit B', gamma protein-coding 561_WT_peak_3730 chr19 36235942 36236292 + 385 NA promoter-TSS (NM_172341) promoter-TSS (NM_172341) 226 NM_144987 199746 Hs.351558 NM_144987 HPRD:03050 U2AF1L4 U2AF1-RS3|U2AF1L3|U2AF1L3V1|U2AF1RS3|U2af26 U2 small nuclear RNA auxiliary factor 1-like 4 protein-coding 561_WT_peak_2126 chr14 23025060 23025762 + 384 NA Intergenic Intergenic 32732 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 561_WT_peak_2871 chr16 67840258 67840924 + 383 NA promoter-TSS (NM_001288994) promoter-TSS (NM_001288994) -36 NM_020850 57610 Hs.368569 NM_020850 HPRD:15207 RANBP10 - RAN binding protein 10 protein-coding 561_WT_peak_6167 chr6 26286590 26286940 + 382 NA Intergenic tRNA-Met-i|tRNA|tRNA -1038 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 561_WT_peak_2119 chr14 21737021 21737661 + 382 NA intron (NM_031314, intron 1 of 8) intron (NM_031314, intron 1 of 8) 297 NM_004500 3183 Hs.508848 NM_004500 HPRD:01243 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 561_WT_peak_2622 chr15 93447001 93447605 + 381 NA promoter-TSS (NR_036136) promoter-TSS (NR_036136) -326 NR_036136 100422995 NR_036136 MIR3175 - microRNA 3175 ncRNA 561_WT_peak_5037 chr3 23958445 23959027 + 381 NA promoter-TSS (NM_020345) promoter-TSS (NM_020345) 83 NM_001253382 6138 Hs.381219 NM_002948 HPRD:16043 RPL15 DBA12|EC45|L15|RPL10|RPLY10|RPYL10 ribosomal protein L15 protein-coding 561_WT_peak_1050 chr10 75385709 75386161 + 379 NA Intergenic CpG 15580 NM_021245 58529 Hs.238756 NM_021245 HPRD:05725 MYOZ1 CS-2|FATZ|MYOZ myozenin 1 protein-coding 561_WT_peak_6401 chr6 91167950 91168252 + 379 NA Intergenic Intergenic 128919 NM_145333 6885 Hs.594838 NM_003188 HPRD:04011 MAP3K7 MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 561_WT_peak_2034 chr13 47167597 47167882 + 378 NA intron (NM_001164211, intron 1 of 19) intron (NM_001164211, intron 1 of 19) 40443 NM_015116 23143 Hs.507971 NM_015116 HPRD:14307 LRCH1 CHDC1|NP81 leucine-rich repeats and calponin homology (CH) domain containing 1 protein-coding 561_WT_peak_6097 chr6 10694475 10694989 + 377 NA promoter-TSS (NM_017906) promoter-TSS (NM_017906) 107 NR_026737 347744 Hs.61389 NM_001145020 ENSG00000137434 C6orf52 - chromosome 6 open reading frame 52 protein-coding 561_WT_peak_1752 chr12 67662500 67663289 + 377 NA promoter-TSS (NM_018448) promoter-TSS (NM_018448) -167 NM_018448 55832 Hs.546407 NM_018448 CAND1 TIP120|TIP120A cullin-associated and neddylation-dissociated 1 protein-coding 561_WT_peak_2025 chr13 45491810 45492309 + 377 NA Intergenic Intergenic 71554 NM_012345 26747 Hs.525006 NM_012345 HPRD:05073 NUFIP1 NUFIP|bA540M5.1 nuclear fragile X mental retardation protein interacting protein 1 protein-coding 561_WT_peak_6184 chr6 26568955 26569268 + 376 NA Intergenic tRNA-Tyr-TAC|tRNA|tRNA -28060 NM_013375 29777 Hs.254406 NM_013375 HPRD:16469 ABT1 hABT1 activator of basal transcription 1 protein-coding 561_WT_peak_1723 chr12 56510352 56510796 + 375 NA exon (NM_001035267, exon 1 of 3) exon (NM_001035267, exon 1 of 3) 200 NM_021104 6171 Hs.112553 NM_021104 HPRD:17999 RPL41 L41 ribosomal protein L41 protein-coding 561_WT_peak_6144 chr6 26103970 26104654 + 375 NA exon (NM_003542, exon 1 of 1) exon (NM_003542, exon 1 of 1) 136 NM_003542 8364 Hs.46423 NM_003542 HIST1H4C H4/g|H4FG|dJ221C16.1 histone cluster 1, H4c protein-coding 561_WT_peak_6159 chr6 26240458 26241494 + 375 NA TTS (NM_003540) TTS (NM_003540) 322 NM_003540 8361 Hs.247816 NM_003540 HIST1H4F H4|H4/c|H4FC histone cluster 1, H4f protein-coding 561_WT_peak_1818 chr12 98896910 98897740 + 374 NA intron (NR_038383, intron 1 of 3) tRNA-Asp-GAY|tRNA|tRNA 308 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LOC643770 - uncharacterized LOC643770 ncRNA 561_WT_peak_1949 chr13 22177935 22178524 + 374 NA exon (NM_152726, exon 1 of 12) exon (NM_152726, exon 1 of 12) 126 NM_152726 221154 Hs.412103 NM_152726 HPRD:16852 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 561_WT_peak_6461 chr6 126101297 126102626 + 374 NA promoter-TSS (NM_001199619) promoter-TSS (NM_001199619) -346 NM_001199619 135112 Hs.171426 NM_181782 HPRD:14814 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 561_WT_peak_3585 chr19 4723842 4724279 + 373 NA promoter-TSS (NM_139159) promoter-TSS (NM_139159) -205 NM_139159 91039 Hs.515081 NM_139159 HPRD:07001 DPP9 DP9|DPLP9|DPRP-2|DPRP2 dipeptidyl-peptidase 9 protein-coding 561_WT_peak_6825 chr7 116502613 116502942 + 373 NA intron (NM_006136, intron 1 of 9) CpG 214 NM_006136 830 Hs.446123 NM_006136 CAPZA2 CAPPA2|CAPZ capping protein (actin filament) muscle Z-line, alpha 2 protein-coding 561_WT_peak_6124 chr6 24720325 24721181 + 372 NA Intergenic CpG -1350 NM_030939 81688 Hs.744857 NM_030939 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 561_WT_peak_3235 chr17 47270716 47271274 + 372 NA Intergenic GA-rich|Low_complexity|Low_complexity 15748 NM_031498 2793 Hs.181781 NM_031498 HPRD:06792 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 protein-coding 561_WT_peak_84 chr1 17231477 17232139 + 372 NA Intergenic Intergenic -16637 NM_014675 9696 Hs.309403 NM_014675 HPRD:16758 CROCC ROLT ciliary rootlet coiled-coil, rootletin protein-coding 561_WT_peak_3282-2 chr17 57916015 57916247 + 371 NA intron (NM_030938, intron 11 of 11) intron (NM_030938, intron 11 of 11) -2496 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 561_WT_peak_3282 chr17 57915161 57915958 + 371 NA intron (NM_030938, intron 10 of 11) intron (NM_030938, intron 10 of 11) -3068 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 561_WT_peak_1137 chr10 104613876 104614502 + 370 NA intron (NM_001136200, intron 1 of 4) CpG 222 NR_037644 100528007 Hs.720370 NR_037644 C10orf32-ASMT C10orf32-AS3MT C10orf32-ASMT readthrough (NMD candidate) ncRNA 561_WT_peak_7615 chrX 133683795 133684168 + 370 NA promoter-TSS (NR_038998) promoter-TSS (NR_038998) -73 NR_038998 100506757 Hs.130961 NR_038998 LINC00629 - long intergenic non-protein coding RNA 629 ncRNA 561_WT_peak_2796 chr16 31191457 31192015 + 370 NA intron (NR_028388, intron 1 of 13) CpG 305 NM_001170937 2521 Hs.46894 NM_004960 HPRD:00660 FUS ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS FUS RNA binding protein protein-coding 561_WT_peak_6135 chr6 26020608 26021589 + 370 NA promoter-TSS (NM_003538) promoter-TSS (NM_003538) 380 NM_003529 8350 Hs.546315 NM_003529 HPRD:04155 HIST1H3A H3/A|H3FA histone cluster 1, H3a protein-coding 561_WT_peak_2853 chr16 57333837 57334638 + 368 NA Intergenic Intergenic -15653 NM_015993 51090 Hs.632215 NM_015993 HPRD:11854 PLLP PMLP|TM4SF11 plasmolipin protein-coding 561_WT_peak_1108 chr10 97849633 97850130 + 367 NA non-coding (NR_038444, exon 1 of 6) non-coding (NR_038444, exon 1 of 6) 111 NR_038444 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 561_WT_peak_3016 chr17 7387488 7388026 + 365 NA promoter-TSS (NM_000937) promoter-TSS (NM_000937) 59 NM_000937 5430 Hs.270017 NM_000937 HPRD:08916 POLR2A POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1 polymerase (RNA) II (DNA directed) polypeptide A, 220kDa protein-coding 561_WT_peak_3687 chr19 19431305 19431897 + 365 NA promoter-TSS (NM_015329) promoter-TSS (NM_015329) -29 NM_015329 23383 Hs.654939 NM_015329 HPRD:11117 MAU2 KIAA0892|MAU2L|SCC4|mau-2 MAU2 sister chromatid cohesion factor protein-coding 561_WT_peak_5108 chr3 50126215 50126996 + 364 NA intron (NR_036627, intron 1 of 23) CpG 264 NR_036627 10181 Hs.439480 NM_005778 HPRD:06052 RBM5 G15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 561_WT_peak_7330 chr9 91925237 91925824 + 363 NA promoter-TSS (NM_001827) promoter-TSS (NM_001827) -583 NM_001827 1164 Hs.83758 NM_001827 HPRD:00300 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 561_WT_peak_3145 chr17 36907920 36908230 + 363 NA promoter-TSS (NM_002795) promoter-TSS (NM_002795) -891 NR_104194 5691 Hs.82793 NM_002795 HPRD:03709 PSMB3 HC10-II proteasome (prosome, macropain) subunit, beta type, 3 protein-coding 561_WT_peak_6638 chr7 35839976 35840774 + 362 NA promoter-TSS (NM_001788) promoter-TSS (NM_001788) -140 NR_120511 101928545 Hs.648103 NR_120511 SEPT7-AS1 - SEPT7 antisense RNA 1 (head to head) ncRNA 561_WT_peak_6158 chr6 26233879 26235301 + 362 NA exon (NM_005320, exon 1 of 1) exon (NM_005320, exon 1 of 1) 626 NM_005320 3007 Hs.136857 NM_005320 HPRD:06764 HIST1H1D H1.3|H1D|H1F3|H1s-2 histone cluster 1, H1d protein-coding 561_WT_peak_3931 chr19 58816522 58817051 + 360 NA Intergenic CpG -21599 NM_181846 342945 Hs.388162 NM_181846 HPRD:01315 ZSCAN22 HKR2|ZNF50 zinc finger and SCAN domain containing 22 protein-coding 561_WT_peak_96 chr1 22109555 22110305 + 359 NA promoter-TSS (NM_001032730) promoter-TSS (NM_001032730) -242 NM_032236 84196 Hs.467524 NM_032236 HPRD:15637 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 561_WT_peak_6623 chr7 25901770 25902061 + 359 NA Intergenic Intergenic -21285 NR_046486 100873753 NR_046486 RNU6-16P RNU6-16 RNA, U6 small nuclear 16, pseudogene snRNA 561_WT_peak_87 chr1 19577891 19578590 + 359 NA promoter-TSS (NM_015047) promoter-TSS (NM_015047) 165 NM_016183 51154 Hs.463797 NM_016183 HPRD:12725 MRTO4 C1orf33|MRT4|dJ657E11.4 mRNA turnover 4 homolog (S. cerevisiae) protein-coding 561_WT_peak_2305 chr14 77563890 77564504 + 358 NA promoter-TSS (NM_033426) promoter-TSS (NM_033426) -381 NM_033426 85457 Hs.709066 NM_033426 HPRD:13890 CIPC KIAA1737 CLOCK-interacting pacemaker protein-coding 561_WT_peak_3018 chr17 7486858 7487714 + 358 NA intron (NM_004870, intron 1 of 6) CpG 321 NM_004870 9526 Hs.246381 NM_004870 HPRD:04951 MPDU1 CDGIF|HBEBP2BPA|Lec35|My008|PP3958|PQLC5|SL15 mannose-P-dolichol utilization defect 1 protein-coding 561_WT_peak_3830 chr19 48866377 48866668 + 356 NA intron (NM_018273, intron 2 of 7) CpG 664 NM_018273 55260 Hs.351335 NM_018273 HPRD:08556 TMEM143 - transmembrane protein 143 protein-coding 561_WT_peak_7270 chr9 46687312 46687852 + 356 NA promoter-TSS (NR_003674) promoter-TSS (NR_003674) 25 NR_047527 387628 Hs.439341 NM_174950 HPRD:13402 KGFLP1 - fibroblast growth factor 7 pseudogene pseudo 561_WT_peak_3623 chr19 10947082 10947534 + 355 NA promoter-TSS (NM_006858) promoter-TSS (NM_006858) -325 NM_006858 11018 Hs.211463 NM_006858 TMED1 IL1RL1LG|Il1rl1l|Tp24 transmembrane emp24 protein transport domain containing 1 protein-coding 561_WT_peak_6245 chr6 28908737 28909061 + 355 NA Intergenic tRNA-Leu-TTG|tRNA|tRNA -2662 NR_103538 729583 Hs.453549 NR_103538 C6orf100 dJ25J6.5 chromosome 6 open reading frame 100 ncRNA 561_WT_peak_6755 chr7 92861471 92861780 + 355 NA promoter-TSS (NM_024553) promoter-TSS (NM_024553) -28 NM_001257998 55610 Hs.202424 NM_017667 ENSG00000004766 CCDC132 - coiled-coil domain containing 132 protein-coding 561_WT_peak_1585 chr12 9894395 9894751 + 354 NA Intergenic Intergenic -8678 NM_001253750 160365 Hs.560087 NM_172004 HPRD:16247 CLECL1 DCAL-1|DCAL1 C-type lectin-like 1 protein-coding 561_WT_peak_7347 chr9 94877368 94877773 + 353 NA intron (NM_178324, intron 1 of 5) CpG 186 NM_178324 10558 Hs.90458 NM_006415 HPRD:05754 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase, long chain base subunit 1 protein-coding 561_WT_peak_4893 chr22 35653338 35653912 + 353 NA intron (NM_001003681, intron 1 of 10) CpG 180 NM_001003681 10042 Hs.588815 NM_005487 HPRD:05267 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG box domain containing 4 protein-coding 561_WT_peak_254 chr1 59165386 59165799 + 353 NA intron (NM_001085487, intron 1 of 19) intron (NM_001085487, intron 1 of 19) 155 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB Myb-like, SWIRM and MPN domains 1 protein-coding 561_WT_peak_1019 chr10 69523705 69524497 + 353 NA Intergenic CpG -68152 NM_013266 29119 Hs.21375 NM_013266 HPRD:09639 CTNNA3 ARVD13|VR22 catenin (cadherin-associated protein), alpha 3 protein-coding 561_WT_peak_12 chr1 1310417 1311204 + 352 NA promoter-TSS (NM_001127230) promoter-TSS (NM_001127230) 8 NM_017900 54998 Hs.632515 NM_017900 HPRD:16457 AURKAIP1 AIP|AKIP|MRP-S38 aurora kinase A interacting protein 1 protein-coding 561_WT_peak_3453 chr18 19180769 19181090 + 352 NA promoter-TSS (NM_052911) promoter-TSS (NM_052911) -236 NM_052911 114799 Hs.464733 NM_052911 HPRD:16868 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 561_WT_peak_6847 chr7 131012572 131013019 + 351 NA promoter-TSS (NR_125364) promoter-TSS (NR_125364) 200 NM_013255 4289 Hs.44693 NM_013255 HPRD:16129 MKLN1 TWA2 muskelin 1, intracellular mediator containing kelch motifs protein-coding 561_WT_peak_6556 chr6 170151287 170152304 + 351 NA promoter-TSS (NM_018341) promoter-TSS (NM_018341) 77 NM_001278532 55780 Hs.47546 NM_018341 HPRD:18697 ERMARD C6orf70|PVNH6|dJ266L20.3 ER membrane-associated RNA degradation protein-coding 561_WT_peak_6040 chr5 178487090 178487509 + 351 NA promoter-TSS (NM_014594) promoter-TSS (NM_014594) -308 NM_014594 30832 Hs.272328 NM_014594 HPRD:15785 ZNF354C KID3 zinc finger protein 354C protein-coding 561_WT_peak_2498 chr15 57998847 57999356 + 351 NA exon (NM_015532, exon 1 of 4) exon (NM_015532, exon 1 of 4) 382 NM_001018102 81488 Hs.437256 NM_015532 HPRD:07575 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 polymerase (RNA) II (DNA directed) polypeptide M protein-coding 561_WT_peak_2048 chr13 49549501 49550610 + 350 NA promoter-TSS (NM_001278438) promoter-TSS (NM_001278438) 7 NM_001079673 22862 Hs.508010 NM_014923 HPRD:13548 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 561_WT_peak_2436 chr15 40885887 40886546 + 350 NA promoter-TSS (NM_144508) promoter-TSS (NM_144508) -231 NM_170589 57082 Hs.181855 NM_144508 HPRD:10634 CASC5 AF15Q14|CT29|D40|KNL1|PPP1R55|Spc7|hKNL-1|hSpc105 cancer susceptibility candidate 5 protein-coding 561_WT_peak_2966 chr17 1303160 1303525 + 348 NA exon (NM_006761, exon 1 of 6) exon (NM_006761, exon 1 of 6) 214 NR_024058 7531 Hs.513851 NM_006761 HPRD:05457 YWHAE 14-3-3E|HEL2|KCIP-1|MDCR|MDS tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon protein-coding 561_WT_peak_2596 chr15 89721000 89721225 + 347 NA intron (NM_007011, intron 10 of 14) intron (NM_007011, intron 10 of 14) 43810 NM_000326 6017 Hs.1933 NM_000326 HPRD:01572 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 561_WT_peak_5137 chr3 58291904 58292226 + 347 NA promoter-TSS (NR_049758) promoter-TSS (NR_049758) 93 NR_049757 11102 Hs.446320 NM_007042 HPRD:18001 RPP14 P14 ribonuclease P/MRP 14kDa subunit protein-coding 561_WT_peak_1921 chr12 125424079 125424929 + 347 NA Intergenic Intergenic 24411 NR_049820 100847004 NR_049820 miRBase:MI0018167 MIR5188 - microRNA 5188 ncRNA 561_WT_peak_2338 chr14 92506058 92506837 + 347 NA promoter-TSS (NM_004239) promoter-TSS (NM_004239) -44 NM_004239 9321 Hs.632339 NM_004239 HPRD:05143 TRIP11 ACG1A|CEV14|GMAP-210|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 561_WT_peak_6523 chr6 155054410 155055291 + 346 NA 5' UTR (NM_014892, exon 1 of 20) 5' UTR (NM_014892, exon 1 of 20) 338 NM_014892 22828 Hs.591329 NM_014892 HPRD:11487 SCAF8 RBM16 SR-related CTD-associated factor 8 protein-coding 561_WT_peak_582 chr1 161015793 161016203 + 345 NA promoter-TSS (NM_007122) promoter-TSS (NM_007122) -229 NM_207005 7391 Hs.414880 NM_007122 HPRD:01880 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 561_WT_peak_6290 chr6 32939914 32940559 + 344 NA promoter-TSS (NM_001199456) promoter-TSS (NM_001199456) -625 NM_001199456 6046 Hs.75243 NM_005104 HPRD:03326 BRD2 D6S113E|FSH|FSRG1|NAT|RING3|RNF3 bromodomain containing 2 protein-coding 561_WT_peak_6191 chr6 27100802 27101859 + 344 NA promoter-TSS (NM_021058) promoter-TSS (NM_021058) 513 NM_021064 8969 Hs.51011 NM_021064 HIST1H2AG H2A.1b|H2A/p|H2AFP|H2AG|pH2A/f histone cluster 1, H2ag protein-coding 561_WT_peak_439 chr1 145382727 145383269 + 342 NA intron (NM_001039703, intron 68 of 85) intron (NM_001039703, intron 68 of 85) -30193 NM_213653 148738 Hs.632436 NM_145277 HPRD:10521 HFE2 HFE2A|HJV|JH|RGMC hemochromatosis type 2 (juvenile) protein-coding 561_WT_peak_5517 chr4 83294781 83295179 + 342 NA 5' UTR (NM_031370, exon 1 of 9) 5' UTR (NM_031370, exon 1 of 9) 169 NM_031369 3184 Hs.480073 NM_002138 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) protein-coding 561_WT_peak_3071 chr17 19411379 19411675 + 342 NA Intergenic tRNA-Trp-TGG|tRNA|tRNA -25640 NM_018242 55244 Hs.232054 NM_018242 HPRD:07703 SLC47A1 MATE1 solute carrier family 47 (multidrug and toxin extrusion), member 1 protein-coding 561_WT_peak_1446 chr11 86013045 86013671 + 341 NA non-coding (NR_024598, exon 1 of 4) non-coding (NR_024598, exon 1 of 4) 105 NM_016401 51501 Hs.283322 NM_016401 HPRD:13701 C11orf73 HSPC179|Hikeshi|L7RN6|OPI10 chromosome 11 open reading frame 73 protein-coding 561_WT_peak_7545 chrX 48979938 48980390 + 340 NA promoter-TSS (NM_015698) promoter-TSS (NM_015698) -13 NM_015698 27238 Hs.503666 NM_015698 GPKOW GPATC5|GPATCH5|Spp2|T54 G patch domain and KOW motifs protein-coding 561_WT_peak_5961 chr5 140090721 140091090 + 340 NA promoter-TSS (NR_026703) promoter-TSS (NR_026703) 44 NR_026703 56664 NR_026703 ENSG00000199990 VTRNA1-1 HVG1|VAULTRC1|VR1|hvg-1|vRNA vault RNA 1-1 ncRNA 561_WT_peak_2139 chr14 23789849 23790290 + 339 NA 5' UTR (NM_004643, exon 1 of 7) 5' UTR (NM_004643, exon 1 of 7) 672 NM_004643 8106 Hs.707712 NM_004643 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein, nuclear 1 protein-coding 561_WT_peak_5572 chr4 106067917 106068332 + 339 NA 5' UTR (NM_001127208, exon 1 of 11) 5' UTR (NM_001127208, exon 1 of 11) 282 NM_001127208 54790 Hs.367639 NM_017628 HPRD:07876 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 561_WT_peak_5497 chr4 71553870 71554479 + 339 NA promoter-TSS (NM_020368) promoter-TSS (NM_020368) -22 NM_020368 57050 Hs.322901 NM_020368 HPRD:18016 UTP3 CRL1|CRLZ1|SAS10 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) protein-coding 561_WT_peak_200 chr1 42216935 42217280 + 339 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 167271 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 561_WT_peak_5767 chr5 61581258 61581807 + 339 NA Intergenic MLT2F|LTR|ERVL -20457 NM_001243953 3796 Hs.558351 NM_004520 KIF2A CDCBM3|HK2|KIF2 kinesin heavy chain member 2A protein-coding 561_WT_peak_7130 chr8 124169217 124169721 + 338 NA Intergenic tRNA-Met_|tRNA|tRNA -21818 NM_207006 84985 Hs.379821 NM_032899 HPRD:17489 FAM83A BJ-TSA-9 family with sequence similarity 83, member A protein-coding 561_WT_peak_586 chr1 161368885 161369745 + 338 NA Intergenic CpG -31642 NM_001013625 257177 Hs.534593 NM_001013625 HPRD:13257 C1orf192 Flattop|Fltp chromosome 1 open reading frame 192 protein-coding 561_WT_peak_2963 chr16 90061334 90062551 + 338 NA non-coding (NR_003226, exon 11 of 11) non-coding (NR_003226, exon 11 of 11) 14587 NM_024043 79007 Hs.301394 NM_024043 HPRD:08327 DBNDD1 - dysbindin (dystrobrevin binding protein 1) domain containing 1 protein-coding 561_WT_peak_325 chr1 93297485 93297962 + 338 NA TTS (NM_001252273) TTS (NM_001252273) 129 NM_000969 6125 Hs.532359 NM_000969 HPRD:04699 RPL5 DBA6|L5|PPP1R135 ribosomal protein L5 protein-coding 561_WT_peak_7035 chr8 64080594 64081518 + 337 NA promoter-TSS (NR_102684) promoter-TSS (NR_102684) -55 NR_102684 101410533 Hs.163027 NR_102684 ENSG00000270673 YTHDF3-AS1 - YTHDF3 antisense RNA 1 (head to head) ncRNA 561_WT_peak_6503 chr6 144536990 144537850 + 336 NA Intergenic CpG 65766 NM_003764 8676 Hs.118958 NM_003764 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 561_WT_peak_1715 chr12 54121250 54121726 + 335 NA promoter-TSS (NM_020898) promoter-TSS (NM_020898) -181 NM_001143682 57658 Hs.156667 NM_020898 HPRD:13868 CALCOCO1 Cocoa|calphoglin calcium binding and coiled-coil domain 1 protein-coding 561_WT_peak_3923 chr19 58258105 58258601 + 335 NA 5' UTR (NM_173632, exon 1 of 3) 5' UTR (NM_173632, exon 1 of 3) 189 NM_173632 284309 Hs.720254 NM_173632 HPRD:08237 ZNF776 - zinc finger protein 776 protein-coding 561_WT_peak_2868 chr16 67018468 67019158 + 335 NA Intergenic Intergenic -3679 NM_173815 283848 Hs.346947 NM_173815 HPRD:07116 CES4A CES6|CES8 carboxylesterase 4A protein-coding 561_WT_peak_1127 chr10 103892374 103893155 + 334 NA promoter-TSS (NM_001288727) promoter-TSS (NM_001288727) 13 NM_001288728 23082 Hs.533551 NM_015062 HPRD:15173 PPRC1 PRC peroxisome proliferator-activated receptor gamma, coactivator-related 1 protein-coding 561_WT_peak_4929 chr22 40573896 40574291 + 334 NA 5' UTR (NM_001162501, exon 1 of 23) 5' UTR (NM_001162501, exon 1 of 23) 164 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing 6B protein-coding 561_WT_peak_2663 chr16 2827368 2827807 + 334 NA promoter-TSS (NM_207013) promoter-TSS (NM_207013) -290 NM_207013 6923 Hs.172772 NM_007108 HPRD:02874 TCEB2 ELOB|SIII transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) protein-coding 561_WT_peak_3381 chr17 78865436 78866103 + 333 NA intron (NM_020761, intron 18 of 33) intron (NM_020761, intron 18 of 33) -86337 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 561_WT_peak_5334 chr3 179322183 179322837 + 332 NA promoter-TSS (NM_001199958) promoter-TSS (NM_001199958) -65 NM_001199958 4711 Hs.730674 NM_002492 HPRD:11956 NDUFB5 CISGDH|SGDH NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa protein-coding 561_WT_peak_339 chr1 100503585 100504185 + 331 NA promoter-TSS (NM_033055) promoter-TSS (NM_033055) 96 NM_033055 64645 Hs.124156 NM_033055 HPRD:11022 HIAT1 - hippocampus abundant transcript 1 protein-coding 561_WT_peak_593 chr1 161500772 161501220 + 331 NA Intergenic Intergenic 6960 NM_002155 3310 Hs.654614 NM_002155 HPRD:00775 HSPA6 - heat shock 70kDa protein 6 (HSP70B') protein-coding 561_WT_peak_94 chr1 21503138 21503392 + 331 NA 5' UTR (NM_001198801, exon 1 of 35) 5' UTR (NM_001198801, exon 1 of 35) 116 NM_001198802 8672 Hs.467084 NM_003760 HPRD:06802 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma, 3 protein-coding 561_WT_peak_1680 chr12 49245648 49246228 + 330 NA promoter-TSS (NM_004818) promoter-TSS (NM_004818) 19 NM_004818 9416 Hs.130098 NM_004818 HPRD:09908 DDX23 PRPF28|SNRNP100|U5-100K|U5-100KD|prp28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 protein-coding 561_WT_peak_2590 chr15 89010359 89010896 + 330 NA promoter-TSS (NM_176805) promoter-TSS (NM_176805) 6 NM_022163 26589 Hs.534261 NM_022163 HPRD:14765 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 561_WT_peak_6037 chr5 178053514 178054077 + 330 NA intron (NM_020666, intron 1 of 12) CpG 259 NM_020666 57396 Hs.406557 NM_020666 HPRD:12140 CLK4 - CDC-like kinase 4 protein-coding 561_WT_peak_4955 chr22 43011220 43011907 + 330 NA promoter-TSS (NM_178136) promoter-TSS (NM_178136) 312 NR_029422 267010 Hs.574857 NR_029422 ENSG00000270022 RNU12 RNU12-1|RNU12L|RNU12P|dJ222E13.7 RNA, U12 small nuclear snRNA 561_WT_peak_314 chr1 89989779 89990183 + 329 NA promoter-TSS (NM_001134476) promoter-TSS (NM_001134476) -416 NM_001134476 23507 Hs.482017 NM_015350 HPRD:18145 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 family, member B protein-coding 561_WT_peak_4154 chr2 74756469 74757166 + 329 NA 5' UTR (NM_013247, exon 1 of 8) 5' UTR (NM_013247, exon 1 of 8) 157 NM_181575 550 Hs.411480 NM_012103 HPRD:03892 AUP1 - ancient ubiquitous protein 1 protein-coding 561_WT_peak_7031 chr8 59727918 59728212 + 328 NA exon (NM_014729, exon 7 of 9) exon (NM_014729, exon 7 of 9) -155661 NM_003580 8439 Hs.372000 NM_003580 HPRD:09117 NSMAF FAN neutral sphingomyelinase (N-SMase) activation associated factor protein-coding 561_WT_peak_2785 chr16 30621109 30621654 + 328 NA promoter-TSS (NR_104166) promoter-TSS (NR_104166) -232 NR_104166 115509 Hs.454685 NM_138447 HPRD:14009 ZNF689 TIPUH1 zinc finger protein 689 protein-coding 561_WT_peak_7628 chrX 153606509 153607181 + 328 NA promoter-TSS (NM_000117) promoter-TSS (NM_000117) -752 NM_000117 2010 Hs.522823 NM_000117 HPRD:02309 EMD EDMD|LEMD5|STA emerin protein-coding 561_WT_peak_924 chr10 27442931 27444140 + 327 NA promoter-TSS (NM_032844) promoter-TSS (NM_032844) -186 NM_014263 10730 Hs.74647 NM_014263 HPRD:06981 YME1L1 FTSH|MEG4|PAMP|YME1L YME1-like 1 ATPase protein-coding 561_WT_peak_5731 chr5 43483929 43484814 + 327 NA promoter-TSS (NM_022483) promoter-TSS (NM_022483) -379 NM_022483 64417 Hs.732093 NM_022483 HPRD:07965 C5orf28 - chromosome 5 open reading frame 28 protein-coding 561_WT_peak_496 chr1 149822010 149824109 + 327 NA promoter-TSS (NR_036461) promoter-TSS (NR_036461) 431 NM_001040874 723790 Hs.530461 NM_001040874 ENSG00000203812 HIST2H2AA4 H2A/R histone cluster 2, H2aa4 protein-coding 561_WT_peak_442 chr1 145397617 145398067 + 326 NA intron (NM_001039703, intron 68 of 85) intron (NM_001039703, intron 68 of 85) -15349 NM_213653 148738 Hs.632436 NM_145277 HPRD:10521 HFE2 HFE2A|HJV|JH|RGMC hemochromatosis type 2 (juvenile) protein-coding 561_WT_peak_2735 chr16 22366757 22367103 + 326 NA intron (NM_001802, intron 2 of 4) LTR54|LTR|ERV1 19008 NM_001802 1039 Hs.513430 NM_001802 HPRD:06681 CDR2 CDR62|Yo cerebellar degeneration-related protein 2, 62kDa protein-coding 561_WT_peak_7477 chr9 137029190 137029790 + 326 NA TTS (NR_023344) TTS (NR_023344) 196 NR_023344 100151684 Hs.545589 NR_023344 ENSG00000221676 RNU6ATAC RNU6ATAC1|U6ATAC RNA, U6atac small nuclear (U12-dependent splicing) snRNA 561_WT_peak_2467 chr15 45492511 45492947 + 325 NA intron (NM_138356, intron 1 of 7) intron (NM_138356, intron 1 of 7) 644 NM_138356 90525 Hs.310399 NM_138356 HPRD:14272 SHF - Src homology 2 domain containing F protein-coding 561_WT_peak_1722 chr12 56435425 56435914 + 325 NA promoter-TSS (NM_001029) promoter-TSS (NM_001029) -17 NM_001029 6231 Hs.447562 NM_001029 HPRD:04743 RPS26 DBA10|S26 ribosomal protein S26 protein-coding 561_WT_peak_520 chr1 151042951 151043701 + 325 NA 5' UTR (NM_144618, exon 1 of 9) 5' UTR (NM_144618, exon 1 of 9) 246 NM_144618 126626 Hs.654699 NM_144618 HPRD:14536 GABPB2 - GA binding protein transcription factor, beta subunit 2 protein-coding 561_WT_peak_1803 chr12 94070889 94071631 + 325 NA intron (NM_003805, intron 1 of 2) intron (NM_003805, intron 1 of 2) 109 NM_003805 8738 Hs.38533 NM_003805 HPRD:04584 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 561_WT_peak_3837 chr19 49148104 49148349 + 324 NA intron (NM_001217, intron 2 of 8) intron (NM_001217, intron 2 of 8) 1225 NM_001217 770 Hs.428446 NM_001217 HPRD:05225 CA11 CARPX1 carbonic anhydrase XI protein-coding 561_WT_peak_1769 chr12 74931528 74931996 + 324 NA 5' UTR (NM_001136262, exon 1 of 1) 5' UTR (NM_001136262, exon 1 of 1) 211 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B - ataxin 7-like 3B protein-coding 561_WT_peak_4406 chr2 192540494 192541012 + 324 NA Intergenic Intergenic -2045 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 561_WT_peak_411 chr1 119682967 119683349 + 324 NA intron (NM_201263, intron 1 of 5) CpG 137 NM_201263 10352 Hs.523506 NM_015836 HPRD:05295 WARS2 TrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 561_WT_peak_2784 chr16 30582730 30583362 + 324 NA 5' UTR (NM_145271, exon 1 of 3) 5' UTR (NM_145271, exon 1 of 3) 682 NM_145271 146542 Hs.301463 NM_145271 HPRD:14070 ZNF688 - zinc finger protein 688 protein-coding 561_WT_peak_7224 chr9 19379840 19380562 + 324 NA promoter-TSS (NM_001010) promoter-TSS (NM_001010) 34 NM_001010 6194 Hs.408073 NM_001010 HPRD:01592 RPS6 S6 ribosomal protein S6 protein-coding 561_WT_peak_1297 chr11 59327712 59328018 + 324 NA Intergenic tRNA-Lys-AAA|tRNA|tRNA 34766 NR_036120 100422880 NR_036120 MIR3162 - microRNA 3162 ncRNA 561_WT_peak_3951 chr2 7049915 7050213 + 323 NA Intergenic Intergenic -7459 NM_014746 9781 Hs.22146 NM_014746 HPRD:11510 RNF144A RNF144|UBCE7IP4 ring finger protein 144A protein-coding 561_WT_peak_6058 chr5 180618427 180619104 + 322 NA non-coding (NR_108031, exon 1 of 2) non-coding (NR_108031, exon 1 of 2) 143 NR_108031 102577426 Hs.277359 NR_108031 LOC102577426 - uncharacterized LOC102577426 ncRNA 561_WT_peak_3900 chr19 56111137 56111601 + 320 NA promoter-TSS (NM_032836) promoter-TSS (NM_032836) -361 NM_153219 147807 Hs.440291 NM_153219 HPRD:15817 ZNF524 - zinc finger protein 524 protein-coding 561_WT_peak_2621 chr15 93443301 93444041 + 319 NA 5' UTR (NM_001042572, exon 1 of 13) 5' UTR (NM_001042572, exon 1 of 13) 120 NM_001271 1106 Hs.220864 NM_001271 HPRD:03669 CHD2 EEOC chromodomain helicase DNA binding protein 2 protein-coding 561_WT_peak_4336 chr2 157257129 157257881 + 318 NA Intergenic Intergenic -34460 NM_001083112 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 561_WT_peak_6821 chr7 112090559 112091109 + 318 NA non-coding (NR_120333, exon 1 of 12) non-coding (NR_120333, exon 1 of 12) 271 NR_120333 3475 Hs.7879 NM_001550 IFRD1 PC4|TIS7 interferon-related developmental regulator 1 protein-coding 561_WT_peak_631 chr1 174968114 174968874 + 318 NA promoter-TSS (NM_014412) promoter-TSS (NM_014412) -77 NM_001007214 27101 Hs.508524 NM_014412 HPRD:07316 CACYBP GIG5|S100A6BP|SIP calcyclin binding protein protein-coding 561_WT_peak_521 chr1 151138296 151138764 + 317 NA promoter-TSS (NM_024041) promoter-TSS (NM_024041) 32 NM_024041 79005 Hs.732060 NM_024041 HPRD:12162 SCNM1 - sodium channel modifier 1 protein-coding 561_WT_peak_6155 chr6 26216016 26216922 + 317 NA promoter-TSS (NM_021052) promoter-TSS (NM_021052) 403 NM_003518 8339 Hs.591809 NM_003518 HPRD:11897 HIST1H2BG H2B.1A|H2B/a|H2BFA|dJ221C16.8 histone cluster 1, H2bg protein-coding 561_WT_peak_6975 chr8 37619674 37620339 + 316 NA promoter-TSS (NM_007198) promoter-TSS (NM_007198) -95 NM_007198 11212 Hs.304792 NM_007198 HPRD:16060 PROSC - proline synthetase co-transcribed homolog (bacterial) protein-coding 561_WT_peak_2336 chr14 91976146 91977290 + 316 NA 5' UTR (NM_001284280, exon 1 of 15) 5' UTR (NM_001284280, exon 1 of 15) 106 NM_001284280 55671 Hs.533887 NM_017936 HPRD:11176 SMEK1 FLFL1|KIAA2010|PP4R3A|smk-1|smk1 SMEK homolog 1, suppressor of mek1 (Dictyostelium) protein-coding 561_WT_peak_3753 chr19 38826209 38826447 + 315 NA promoter-TSS (NM_021185) promoter-TSS (NM_021185) -115 NM_021185 57828 Hs.324335 NM_021185 HPRD:12698 CATSPERG C19orf15 catsper channel auxiliary subunit gamma protein-coding 561_WT_peak_211 chr1 45241204 45241663 + 315 NA promoter-TSS (NR_000024) promoter-TSS (NR_000024) -104 NR_000015 26811 NR_000015 SNORD55 RNU39|RNU55|SNORD39|U39|U55 small nucleolar RNA, C/D box 55 snoRNA 561_WT_peak_2835 chr16 47007612 47008073 + 314 NA promoter-TSS (NM_005880) promoter-TSS (NM_005880) -217 NM_005880 10294 Hs.368078 NM_005880 HPRD:07105 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ (Hsp40) homolog, subfamily A, member 2 protein-coding 561_WT_peak_6884 chr7 148660249 148660502 + 313 NA Intergenic Intergenic 65407 NM_004911 9601 Hs.93659 NM_004911 HPRD:06501 PDIA4 ERP70|ERP72|ERp-72 protein disulfide isomerase family A, member 4 protein-coding 561_WT_peak_3726 chr19 35953611 35953857 + 312 NA Intergenic HAL1|LINE|L1 13117 NM_005306 2867 Hs.248056 NM_005306 HPRD:04824 FFAR2 FFA2R|GPR43 free fatty acid receptor 2 protein-coding 561_WT_peak_5567 chr4 103748217 103748713 + 311 NA promoter-TSS (NM_181892) promoter-TSS (NM_181892) -125 NM_181892 7323 Hs.518773 NM_003340 HPRD:04269 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin-conjugating enzyme E2D 3 protein-coding 561_WT_peak_6507 chr6 146136036 146136420 + 311 NA promoter-TSS (NM_032145) promoter-TSS (NM_032145) 216 NR_038244 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 561_WT_peak_3852 chr19 49946839 49947240 + 309 NA Intergenic CpG -2231 NM_020309 57030 Hs.375616 NM_020309 HPRD:05551 SLC17A7 BNPI|VGLUT1 solute carrier family 17 (vesicular glutamate transporter), member 7 protein-coding 561_WT_peak_4526 chr2 242254136 242255102 + 309 NA promoter-TSS (NM_006155) promoter-TSS (NM_006155) 17 NM_001008491 4735 Hs.721234 NM_004404 HPRD:03297 SEPT2 DIFF6|NEDD-5|NEDD5|Pnutl3|hNedd5 septin 2 protein-coding 561_WT_peak_940 chr10 32344691 32345351 + 309 NA 5' UTR (NM_004521, exon 1 of 26) 5' UTR (NM_004521, exon 1 of 26) 350 NM_004521 3799 Hs.327736 NM_004521 HPRD:07214 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 561_WT_peak_3484 chr18 33077737 33078106 + 309 NA promoter-TSS (NM_194281) promoter-TSS (NM_194281) 34 NM_001098817 125476 Hs.464903 NM_194281 HPRD:10719 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 561_WT_peak_3804 chr19 45988599 45988920 + 309 NA 3' UTR (NM_005619, exon 11 of 11) 3' UTR (NM_005619, exon 11 of 11) 7744 NM_206901 6253 Hs.47517 NM_005619 HPRD:04421 RTN2 NSP2|NSPL1|NSPLI|SPG12 reticulon 2 protein-coding 561_WT_peak_3 chr1 713702 714078 + 308 NA non-coding (NR_033908, exon 1 of 7) non-coding (NR_033908, exon 1 of 7) 178 NR_033908 100288069 Hs.527521 NR_033908 ENSG00000228327 LOC100288069 - uncharacterized LOC100288069 ncRNA 561_WT_peak_926 chr10 27531080 27531947 + 308 NA promoter-TSS (NM_001301253) promoter-TSS (NM_001301253) -445 NM_001301253 91452 Hs.530597 NM_145698 HPRD:12415 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 561_WT_peak_3194 chr17 41464607 41464885 + 307 NA intron (NR_027413, intron 1 of 3) U2|snRNA|snRNA 1520 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 561_WT_peak_4644 chr20 43324394 43324704 + 307 NA Intergenic MLT1I|LTR|ERVL-MaLR -19336 NM_003881 8839 Hs.592145 NM_003881 HPRD:16020 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding 561_WT_peak_7263 chr9 42367967 42368231 + 307 NA promoter-TSS (NM_001012419).3 promoter-TSS (NM_001012419).3 -204 NM_001012421 441430 Hs.632663 NM_001012421 HPRD:18652 ANKRD20A2 - ankyrin repeat domain 20 family, member A2 protein-coding 561_WT_peak_1358-2 chr11 65266294 65267479 + 306 NA non-coding (NR_002819, exon 1 of 1) non-coding (NR_002819, exon 1 of 1) 1653 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 561_WT_peak_1358 chr11 65265655 65266237 + 306 NA non-coding (NR_002819, exon 1 of 1) non-coding (NR_002819, exon 1 of 1) 713 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 561_WT_peak_1358-3 chr11 65268070 65268076 + 306 NA non-coding (NR_002819, exon 1 of 1) non-coding (NR_002819, exon 1 of 1) 2840 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 561_WT_peak_4069 chr2 54342418 54343083 + 305 NA 5' UTR (NM_138448, exon 1 of 4) 5' UTR (NM_138448, exon 1 of 4) 340 NM_138448 98 Hs.516173 NM_138448 HPRD:00028 ACYP2 ACYM|ACYP acylphosphatase 2, muscle type protein-coding 561_WT_peak_4145 chr2 74154009 74154385 + 305 NA intron (NM_080916, intron 1 of 6) CpG 244 NM_080918 1716 Hs.469022 NM_001929 HPRD:03273 DGUOK MTDPS3|dGK deoxyguanosine kinase protein-coding 561_WT_peak_773 chr1 228752638 228752920 + 305 NA Intergenic CpG -27615 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_6152 chr6 26198299 26200319 + 305 NA promoter-TSS (NM_003522) promoter-TSS (NM_003522) 212 NM_003530 8351 Hs.532144 NM_003530 HPRD:11905 HIST1H3D H3/b|H3FB histone cluster 1, H3d protein-coding 561_WT_peak_5218 chr3 119181951 119183032 + 304 NA promoter-TSS (NM_018266) promoter-TSS (NM_018266) 38 NR_073506 55254 Hs.594171 NM_018266 HPRD:07713 TMEM39A - transmembrane protein 39A protein-coding 561_WT_peak_5659 chr5 10015 11788 + 303 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -129472 NM_052909 153478 Hs.535800 NM_052909 PLEKHG4B - pleckstrin homology domain containing, family G (with RhoGef domain) member 4B protein-coding 561_WT_peak_5377 chr3 197517968 197518762 + 303 NA exon (NM_032773, exon 1 of 19) exon (NM_032773, exon 1 of 19) 220 NM_032773 84859 Hs.518414 NM_032773 HPRD:14308 LRCH3 - leucine-rich repeats and calponin homology (CH) domain containing 3 protein-coding 561_WT_peak_2322 chr14 90797872 90798393 + 303 NA intron (NM_017970, intron 1 of 13) intron (NM_017970, intron 1 of 13) 349 NM_017970 55051 Hs.528131 NM_017970 HPRD:12625 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 561_WT_peak_3175 chr17 39845101 39846244 + 303 NA intron (NM_005801, intron 1 of 3) CpG 545 NM_005801 10209 Hs.150580 NM_005801 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 561_WT_peak_3124 chr17 33541167 33541549 + 301 NA Intergenic HAL1|LINE|L1 -19946 NM_152462 146861 Hs.514814 NM_152462 HPRD:12450 SLC35G3 AMAC1|TMEM21A solute carrier family 35, member G3 protein-coding 561_WT_peak_835 chr1 249167995 249168713 + 300 NA Intergenic Intergenic -15039 NM_001193328 55657 Hs.377705 NM_017865 HPRD:07922 ZNF692 AREBP|Zfp692 zinc finger protein 692 protein-coding 561_WT_peak_6277 chr6 31588407 31588951 + 300 NA intron (NM_080686, intron 1 of 30).3 CpG 229 NM_080686 7916 Hs.123239 NM_004638 HPRD:00807 PRRC2A BAT2|D6S51|D6S51E|G2 proline-rich coiled-coil 2A protein-coding 561_WT_peak_2734 chr16 22309558 22310053 + 298 NA intron (NM_001258035, intron 1 of 19) MIR|SINE|MIR 1109 NM_001258035 55718 Hs.460298 NM_018119 HPRD:15155 POLR3E RPC5|SIN polymerase (RNA) III (DNA directed) polypeptide E (80kD) protein-coding 561_WT_peak_5512 chr4 78783266 78784210 + 297 NA promoter-TSS (NM_020236) promoter-TSS (NM_020236) -67 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 561_WT_peak_3325 chr17 66287699 66288572 + 297 NA promoter-TSS (NM_001174166) promoter-TSS (NM_001174166) 499 NM_001267727 22901 Hs.437249 NM_014960 ARSG - arylsulfatase G protein-coding 561_WT_peak_7474 chr9 136215006 136215433 + 297 NA promoter-TSS (NM_133640) promoter-TSS (NM_133640) 150 NM_000972 6130 Hs.499839 NM_000972 HPRD:01712 RPL7A L7A|SURF3|TRUP ribosomal protein L7a protein-coding 561_WT_peak_3056 chr17 17494832 17495366 + 296 NA promoter-TSS (NM_148172) promoter-TSS (NM_148172) -82 NM_001267551 10400 Hs.714193 NM_007169 HPRD:03862 PEMT PEAMT|PEMPT|PEMT2|PNMT phosphatidylethanolamine N-methyltransferase protein-coding 561_WT_peak_1179 chr11 450098 450400 + 296 NA promoter-TSS (NM_030783) promoter-TSS (NM_030783) -31 NM_030783 81490 Hs.731700 NM_030783 HPRD:17927 PTDSS2 PSS2 phosphatidylserine synthase 2 protein-coding 561_WT_peak_3317 chr17 65713770 65714297 + 296 NA promoter-TSS (NM_015462) promoter-TSS (NM_015462) -28 NM_015462 25926 Hs.463936 NM_015462 HPRD:10900 NOL11 - nucleolar protein 11 protein-coding 561_WT_peak_2014 chr13 42845584 42846178 + 296 NA promoter-TSS (NM_016248) promoter-TSS (NM_016248) -408 NM_016248 11215 Hs.105105 NM_016248 HPRD:05261 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A kinase (PRKA) anchor protein 11 protein-coding 561_WT_peak_755 chr1 226250421 226251360 + 296 NA intron (NM_002107, intron 1 of 3) CpG 462 NR_002315 440926 Hs.533624 NR_002315 ENSG00000235655 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 561_WT_peak_4489 chr2 232328409 232329276 + 294 NA intron (NM_005381, intron 1 of 13) CpG 363 NM_005381 4691 Hs.79110 NM_005381 NCL C23 nucleolin protein-coding 561_WT_peak_2770 chr16 29818646 29819494 + 294 NA exon (NM_002383, exon 2 of 5) exon (NM_002383, exon 2 of 5) 1212 NM_001276276 4150 Hs.23650 NM_002383 HPRD:02999 MAZ PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87 MYC-associated zinc finger protein (purine-binding transcription factor) protein-coding 561_WT_peak_3929 chr19 58694458 58695057 + 294 NA 5' UTR (NM_016324, exon 1 of 5) 5' UTR (NM_016324, exon 1 of 5) 401 NM_001278734 10782 Hs.83761 NM_016324 HPRD:05682 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 561_WT_peak_6587 chr7 7221796 7222184 + 293 NA promoter-TSS (NM_020156) promoter-TSS (NM_020156) -256 NM_020156 56913 Hs.239666 NM_020156 HPRD:16631 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 561_WT_peak_4592 chr20 26189838 26190244 + 293 NA promoter-TSS (NR_040095) promoter-TSS (NR_040095) -172 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene (non-protein coding) ncRNA 561_WT_peak_5849 chr5 90676217 90676540 + 293 NA non-coding (NR_027435, exon 1 of 3) non-coding (NR_027435, exon 1 of 3) 214 NR_027435 100129716 Hs.116364 NR_027435 ARRDC3-AS1 - ARRDC3 antisense RNA 1 ncRNA 561_WT_peak_5713 chr5 41925091 41925864 + 292 NA exon (NM_012176, exon 1 of 7) exon (NM_012176, exon 1 of 7) 121 NM_033484 26272 Hs.165575 NM_012176 HPRD:09949 FBXO4 FBX4 F-box protein 4 protein-coding 561_WT_peak_104 chr1 24286241 24286755 + 292 NA intron (NM_017761, intron 1 of 2) CpG 197 NM_017761 55629 Hs.7862 NM_017761 HPRD:17871 PNRC2 - proline-rich nuclear receptor coactivator 2 protein-coding 561_WT_peak_2280 chr14 73524718 73525351 + 292 NA promoter-TSS (NM_021239) promoter-TSS (NM_021239) -187 NM_021239 58517 Hs.531106 NM_021239 HPRD:15229 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 561_WT_peak_5179 chr3 101362716 101363022 + 291 NA Intergenic MER41B|LTR|ERV1 -32405 NR_024407 100009676 Hs.743292 NR_024407 ENSG00000256628 ZBTB11-AS1 - ZBTB11 antisense RNA 1 ncRNA 561_WT_peak_361 chr1 110026577 110026883 + 291 NA intron (NM_153340, intron 1 of 10) CpG 169 NM_153340 127002 Hs.118248 NM_153340 HPRD:12506 ATXN7L2 - ataxin 7-like 2 protein-coding 561_WT_peak_1932 chr12 133464281 133464762 + 290 NA promoter-TSS (NM_001161347) promoter-TSS (NM_001161347) 93 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 561_WT_peak_6426 chr6 108616067 108616706 + 290 NA exon (NM_145315, exon 1 of 13) exon (NM_145315, exon 1 of 13) 288 NM_145315 246269 Hs.259666 NM_145315 HPRD:11223 LACE1 AFG1 lactation elevated 1 protein-coding 561_WT_peak_4659 chr20 46130481 46130825 + 290 NA promoter-TSS (NM_001174087) promoter-TSS (NM_001174087) 52 NM_001174088 8202 Hs.592142 NM_006534 HPRD:03570 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 561_WT_peak_7361 chr9 98637762 98638419 + 290 NA non-coding (NR_023389, exon 1 of 3) non-coding (NR_023389, exon 1 of 3) 169 NR_023389 100128782 Hs.494549 NR_023389 ENSG00000175611 LINC00476 C9orf130|NAG11 long intergenic non-protein coding RNA 476 ncRNA 561_WT_peak_1421 chr11 77597511 77597773 + 289 NA intron (NM_033547, intron 21 of 22) LSU-rRNA_Hsa|rRNA|rRNA 65434 NM_024684 28971 Hs.745040 NM_024684 HPRD:17924 AAMDC C11orf67|CK067 adipogenesis associated, Mth938 domain containing protein-coding 561_WT_peak_115 chr1 25573649 25574002 + 289 NA 5' UTR (NM_020317, exon 1 of 5) 5' UTR (NM_020317, exon 1 of 5) 160 NM_020317 57035 Hs.259412 NM_020317 HPRD:14835 RSRP1 C1orf63|DJ465N24.2.1|NPD014 arginine/serine-rich protein 1 protein-coding 561_WT_peak_4377 chr2 178077433 178078226 + 289 NA TTS (NR_039646) TTS (NR_039646) 375 NR_039646 100616394 NR_039646 miRBase:MI0016787 MIR4444-1 MIR4444|hsa-mir-4444-1 microRNA 4444-1 ncRNA 561_WT_peak_3169 chr17 38296733 38297194 + 289 NA exon (NM_007359, exon 1 of 14) exon (NM_007359, exon 1 of 14) 456 NM_007359 22794 Hs.743287 NM_007359 HPRD:16225 CASC3 BTZ|MLN51 cancer susceptibility candidate 3 protein-coding 561_WT_peak_4144 chr2 73511795 73512259 + 287 NA Intergenic CpG 8802 NM_001965 1961 Hs.3052 NM_001965 HPRD:00550 EGR4 NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 561_WT_peak_7637 chrY 1531833 1532176 + 287 NA 3' UTR (NM_178129, exon 2 of 2).2 3' UTR (NM_178129, exon 2 of 2).2 -9349 NM_001173473 8623 Hs.533514 NM_004192 HPRD:02156 ASMTL ASMTLX|ASMTLY|ASTML acetylserotonin O-methyltransferase-like protein-coding 561_WT_peak_3724 chr19 35168284 35169191 + 287 NA non-coding (NR_110322, exon 1 of 3) non-coding (NR_110322, exon 1 of 3) 193 NM_001289184 55900 Hs.436350 NM_018443 HPRD:15765 ZNF302 HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327 zinc finger protein 302 protein-coding 561_WT_peak_208 chr1 45097183 45098053 + 287 NA intron (NM_018150, intron 5 of 14) CpG 42662 NM_024587 79639 Hs.22157 NM_024587 HPRD:07989 TMEM53 NET4 transmembrane protein 53 protein-coding 561_WT_peak_7183 chr8 144897878 144898185 + 287 NA promoter-TSS (NM_015356) promoter-TSS (NM_015356) -482 NM_182706 23513 Hs.436329 NM_015356 HPRD:06984 SCRIB CRIB1|SCRB1|SCRIB1|Vartul scribbled planar cell polarity protein protein-coding 561_WT_peak_3152 chr17 37309871 37310212 + 287 NA Intergenic tRNA-Cys-TGY|tRNA|tRNA -2139 NM_020405 57125 Hs.125036 NM_020405 HPRD:08439 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 561_WT_peak_5946 chr5 138629185 138630363 + 286 NA intron (NM_001194956, intron 1 of 13) CpG 335 NM_001194956 9782 Hs.268939 NM_018834 HPRD:05270 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 561_WT_peak_1210 chr11 10879063 10879979 + 285 NA promoter-TSS (NM_021211) promoter-TSS (NM_021211) 99 NM_001143667 58486 Hs.655066 NM_021211 HPRD:17429 ZBED5 Buster1 zinc finger, BED-type containing 5 protein-coding 561_WT_peak_24 chr1 2457568 2457825 + 285 NA intron (NM_018216, intron 1 of 18) CpG 339 NM_018216 55229 Hs.26156 NM_018216 HPRD:07313 PANK4 - pantothenate kinase 4 protein-coding 561_WT_peak_7050 chr8 70602328 70602569 + 285 NA intron (NM_001146008, intron 5 of 7) LSU-rRNA_Hsa|rRNA|rRNA 142956 NM_001146009 81796 Hs.152460 NM_030958 HPRD:15399 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15 solute carrier organic anion transporter family, member 5A1 protein-coding 561_WT_peak_1785 chr12 89434032 89434534 + 284 NA Intergenic Intergenic -20814 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 561_WT_peak_944 chr10 32667724 32668004 + 284 NA promoter-TSS (NM_001282391) promoter-TSS (NM_001282391) -138 NM_001282391 80314 Hs.167805 NM_025209 HPRD:09941 EPC1 Epl1 enhancer of polycomb homolog 1 (Drosophila) protein-coding 561_WT_peak_7271 chr9 46843847 46844391 + 283 NA Intergenic Intergenic 80328 NR_046203 643648 Hs.640178 NR_046203 LINC01189 - long intergenic non-protein coding RNA 1189 ncRNA 561_WT_peak_3492 chr18 43677904 43678290 + 283 NA 5' UTR (NM_001257335, exon 1 of 12) 5' UTR (NM_001257335, exon 1 of 12) 222 NM_001257335 498 Hs.298280 NM_004046 HPRD:01258 ATP5A1 ATP5A|ATP5AL2|ATPM|HEL-S-123m|MC5DN4|MOM2|OMR|ORM|hATP1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle protein-coding 561_WT_peak_906 chr10 21814777 21815173 + 283 NA promoter-TSS (NM_207371) promoter-TSS (NM_207371) -364 NM_207371 387640 Hs.350848 NM_207371 HPRD:16981 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 561_WT_peak_6973 chr8 33370903 33371458 + 283 NA promoter-TSS (NM_001102401) promoter-TSS (NM_001102401) -477 NM_025115 80185 Hs.77135 NM_025115 HPRD:13390 TTI2 C8orf41|MRT39 TELO2 interacting protein 2 protein-coding 561_WT_peak_2712 chr16 18801237 18801708 + 282 NA intron (NM_001030009, intron 1 of 4) CpG 184 NM_001030009 6210 Hs.370504 NM_001019 HPRD:04723 RPS15A S15a ribosomal protein S15a protein-coding 561_WT_peak_4136 chr2 70475988 70476317 + 282 NA promoter-TSS (NM_022037) promoter-TSS (NM_022037) -373 NM_022173 7072 Hs.413123 NM_022037 HPRD:04626 TIA1 TIA-1|WDM TIA1 cytotoxic granule-associated RNA binding protein protein-coding 561_WT_peak_7542 chrX 48794308 48794599 + 282 NA intron (NM_017602, intron 2 of 8) intron (NM_017602, intron 2 of 8) -18040 NM_006875 11040 Hs.727148 NM_006875 HPRD:02244 PIM2 - Pim-2 proto-oncogene, serine/threonine kinase protein-coding 561_WT_peak_88 chr1 19717564 19718019 + 282 NA intron (NM_001206540, intron 2 of 9) intron (NM_001206540, intron 2 of 9) 79051 NM_001040125 54896 Hs.647620 NM_017765 HPRD:17896 PQLC2 - PQ loop repeat containing 2 protein-coding 561_WT_peak_6208 chr6 27655869 27656350 + 282 NA Intergenic Intergenic -5705 NR_038293 100507173 Hs.635987 NR_038292 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 561_WT_peak_4456 chr2 207630067 207630674 + 281 NA promoter-TSS (NM_001039845) promoter-TSS (NM_001039845) -97 NR_104261 130752 Hs.147816 NM_206892 HPRD:14375 MDH1B RP11-95H11 malate dehydrogenase 1B, NAD (soluble) protein-coding 561_WT_peak_1917 chr12 125398699 125399468 + 280 NA intron (NM_021009, intron 1 of 1) CpG 504 NM_021009 7316 Hs.520348 NM_021009 HPRD:07038 UBC HMG20 ubiquitin C protein-coding 561_WT_peak_249 chr1 54518511 54519500 + 280 NA promoter-TSS (NM_153035) promoter-TSS (NM_153035) 106 NM_004872 9528 Hs.523262 NM_004872 HPRD:12731 TMEM59 C1orf8|HSPC001 transmembrane protein 59 protein-coding 561_WT_peak_4717 chr20 61569007 61569330 + 279 NA promoter-TSS (NM_017896) promoter-TSS (NM_017896) 136 NM_080797 11083 Hs.517172 NM_022105 HPRD:10363 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 561_WT_peak_5708 chr5 40755950 40756297 + 279 NA promoter-TSS (NM_012382) promoter-TSS (NM_012382) -51 NM_012382 23548 Hs.348915 NM_012382 HPRD:17807 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 561_WT_peak_158 chr1 33115962 33116725 + 278 NA promoter-TSS (NM_178547) promoter-TSS (NM_178547) -158 NM_178547 339487 Hs.655921 NM_178547 ZBTB8OS ARCH|ARCH2 zinc finger and BTB domain containing 8 opposite strand protein-coding 561_WT_peak_6023 chr5 172571443 172571763 + 278 NA exon (NM_001205, exon 1 of 6) exon (NM_001205, exon 1 of 6) 158 NM_013979 662 Hs.145726 NM_001205 HPRD:04480 BNIP1 NIP1|SEC20|TRG-8 BCL2/adenovirus E1B 19kDa interacting protein 1 protein-coding 561_WT_peak_256 chr1 59249214 59250430 + 278 NA promoter-TSS (NM_002228) promoter-TSS (NM_002228) -37 NM_002228 3725 Hs.696684 NM_002228 HPRD:01302 JUN AP-1|AP1|c-Jun jun proto-oncogene protein-coding 561_WT_peak_6169 chr6 26322892 26323293 + 277 NA Intergenic tRNA-Arg-CGA|tRNA|tRNA -37365 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 561_WT_peak_609 chr1 168194761 168195478 + 277 NA promoter-TSS (NM_199344) promoter-TSS (NM_199344) -136 NM_199344 375035 Hs.645435 NM_199344 SFT2D2 UNQ512|dJ747L4.C1.2 SFT2 domain containing 2 protein-coding 561_WT_peak_761 chr1 227950289 227950770 + 277 NA intron (NM_053052, intron 3 of 4) intron (NM_053052, intron 3 of 4) -27417 NM_001161465 65094 Hs.555974 NM_023007 HPRD:07774 JMJD4 - jumonji domain containing 4 protein-coding 561_WT_peak_5882 chr5 115420506 115420916 + 277 NA promoter-TSS (NM_016144) promoter-TSS (NM_016144) -16 NM_016144 51397 Hs.483136 NM_016144 HPRD:16734 COMMD10 PTD002 COMM domain containing 10 protein-coding 561_WT_peak_1436 chr11 82997070 82997607 + 277 NA 5' UTR (NM_021825, exon 1 of 9) 5' UTR (NM_021825, exon 1 of 9) 112 NM_001286117 60492 Hs.368866 NM_021825 HPRD:14378 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 561_WT_peak_7261 chr9 41954242 41954748 + 276 NA non-coding (NR_015363, exon 2 of 2) non-coding (NR_015363, exon 2 of 2) 581 NR_015363 389741 Hs.380240 NM_203448 GLIDR LINC01172 glioblastoma down-regulated RNA ncRNA 561_WT_peak_5963 chr5 140699862 140700387 + 276 NA 5' UTR (NM_005642, exon 1 of 1) 5' UTR (NM_005642, exon 1 of 1) 227 NM_005642 6879 Hs.438838 NM_005642 HPRD:07196 TAF7 TAF2F|TAFII55 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa protein-coding 561_WT_peak_155 chr1 32645122 32645558 + 275 NA promoter-TSS (NM_175852) promoter-TSS (NM_175852) -5 NM_175852 200081 Hs.17987 NM_175852 HPRD:09408 TXLNA IL14|TXLN taxilin alpha protein-coding 561_WT_peak_3269 chr17 56736135 56736733 + 274 NA intron (NM_198393, intron 1 of 32) intron (NM_198393, intron 1 of 32) 32982 NM_001201457 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113 testis expressed 14 protein-coding 561_WT_peak_4360 chr2 170550995 170551360 + 274 NA promoter-TSS (NM_001085447) promoter-TSS (NM_001085447) 213 NM_001199286 493911 Hs.745233 NM_001008489 HPRD:17848 PHOSPHO2 - phosphatase, orphan 2 protein-coding 561_WT_peak_5807 chr5 72793955 72794689 + 274 NA promoter-TSS (NM_001207) promoter-TSS (NM_001207) 72 NM_001207 689 Hs.591768 NM_001207 HPRD:03966 BTF3 BETA-NAC|BTF3a|BTF3b|NACB basic transcription factor 3 protein-coding 561_WT_peak_3399 chr17 80452464 80452808 + 274 NA Intergenic tRNA-Met-i|tRNA|tRNA -24958 NM_004514 3607 Hs.591140 NM_004514 HPRD:00982 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 561_WT_peak_1588 chr12 9911878 9912052 + 273 NA intron (NM_001781, intron 1 of 4) intron (NM_001781, intron 1 of 4) 1532 NM_001781 969 Hs.208854 NM_001781 HPRD:00119 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 561_WT_peak_6266-2 chr6 30584715 30585165 + 273 NA promoter-TSS (NM_014046).4 promoter-TSS (NM_014046).4 144 NM_002714 5514 Hs.106019 NM_002714 HPRD:04797 PPP1R10 CAT53|FB19|PNUTS|PP1R10|R111|p99 protein phosphatase 1, regulatory subunit 10 protein-coding 561_WT_peak_3276 chr17 57697024 57697480 + 273 NA 5' UTR (NM_001288653, exon 1 of 32) 5' UTR (NM_001288653, exon 1 of 32) 202 NM_001288653 1213 Hs.491351 NM_004859 HPRD:00350 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc clathrin, heavy chain (Hc) protein-coding 561_WT_peak_6266 chr6 30584155 30584626 + 273 NA non-coding (NR_072994, exon 2 of 20) non-coding (NR_072994, exon 2 of 20) 694 NM_002714 5514 Hs.106019 NM_002714 HPRD:04797 PPP1R10 CAT53|FB19|PNUTS|PP1R10|R111|p99 protein phosphatase 1, regulatory subunit 10 protein-coding 561_WT_peak_1588-2 chr12 9912642 9912890 + 273 NA intron (NM_001781, intron 1 of 4) intron (NM_001781, intron 1 of 4) 731 NM_001781 969 Hs.208854 NM_001781 HPRD:00119 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 561_WT_peak_1588-3 chr12 9913288 9913546 + 273 NA promoter-TSS (NM_001781) promoter-TSS (NM_001781) 80 NM_001781 969 Hs.208854 NM_001781 HPRD:00119 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 561_WT_peak_1573 chr12 8179490 8179860 + 272 NA Intergenic Intergenic -5684 NM_018416 55810 Hs.120844 NM_018416 HPRD:17014 FOXJ2 FHX forkhead box J2 protein-coding 561_WT_peak_2232 chr14 58764469 58764858 + 272 NA promoter-TSS (NM_023000) promoter-TSS (NM_023000) 192 NR_029434 379025 Hs.531089 NR_029434 ENSG00000257621 FLJ31306 - uncharacterized LOC379025 ncRNA 561_WT_peak_3997 chr2 27304151 27304437 + 271 NA intron (NM_007046, intron 3 of 7) intron (NM_007046, intron 3 of 7) 2859 NM_007046 11117 Hs.63348 NM_007046 HPRD:00563 EMILIN1 EMI|EMILIN|gp115 elastin microfibril interfacer 1 protein-coding 561_WT_peak_5859 chr5 96270269 96271344 + 271 NA promoter-TSS (NM_005575) promoter-TSS (NM_005575) -540 NM_005575 4012 Hs.527199 NM_005575 HPRD:01041 LNPEP CAP|IRAP|P-LAP|PLAP leucyl/cystinyl aminopeptidase protein-coding 561_WT_peak_6020 chr5 172197614 172198691 + 271 NA promoter-TSS (NM_004417) promoter-TSS (NM_004417) 51 NM_004417 1843 Hs.171695 NM_004417 HPRD:02835 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 561_WT_peak_4811-2 chr21 43845333 43845628 + 270 NA intron (NM_001001895, intron 6 of 13) intron (NM_001001895, intron 6 of 13) 21509 NM_001001895 53347 Hs.473912 NM_018961 HPRD:06904 UBASH3A CLIP4|STS-2|TULA|TULA-1 ubiquitin associated and SH3 domain containing A protein-coding 561_WT_peak_117 chr1 26324456 26324988 + 270 NA promoter-TSS (NM_000437) promoter-TSS (NM_000437) -74 NM_000437 5051 Hs.477083 NM_000437 HPRD:03824 PAFAH2 HSD-PLA2 platelet-activating factor acetylhydrolase 2, 40kDa protein-coding 561_WT_peak_1310 chr11 61196987 61197924 + 270 NA promoter-TSS (NM_017841) promoter-TSS (NM_017841) 9 NM_001136040 79869 Hs.718984 NM_024811 HPRD:16906 CPSF7 CFIm59 cleavage and polyadenylation specific factor 7, 59kDa protein-coding 561_WT_peak_804 chr1 235147427 235148126 + 270 NA Intergenic Intergenic 143476 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 561_WT_peak_2987 chr17 4046350 4047358 + 270 NA promoter-TSS (NM_001254755) promoter-TSS (NM_001254755) -61 NM_001254755 124936 Hs.513871 NM_144611 HPRD:14549 CYB5D2 - cytochrome b5 domain containing 2 protein-coding 561_WT_peak_4811 chr21 43845105 43845210 + 270 NA intron (NM_001001895, intron 6 of 13) MLT1B|LTR|ERVL-MaLR 21186 NM_001001895 53347 Hs.473912 NM_018961 HPRD:06904 UBASH3A CLIP4|STS-2|TULA|TULA-1 ubiquitin associated and SH3 domain containing A protein-coding 561_WT_peak_6179 chr6 26537640 26538489 + 270 NA promoter-TSS (NM_006353) promoter-TSS (NM_006353) -508 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 561_WT_peak_4922 chr22 39916416 39917000 + 269 NA 5' UTR (NM_182810, exon 1 of 3) 5' UTR (NM_182810, exon 1 of 3) 139 NM_182810 468 Hs.496487 NM_001675 HPRD:06817 ATF4 CREB-2|CREB2|TAXREB67|TXREB activating transcription factor 4 protein-coding 561_WT_peak_6057 chr5 180615776 180616046 + 268 NA Intergenic tRNA-Pro-CCA|tRNA|tRNA 2997 NR_108031 102577426 Hs.277359 NR_108031 LOC102577426 - uncharacterized LOC102577426 ncRNA 561_WT_peak_7323 chr9 86594413 86595739 + 268 NA promoter-TSS (NM_024945) promoter-TSS (NM_024945) 108 NM_031263 3190 Hs.522257 NM_002140 HPRD:02834 HNRNPK CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 561_WT_peak_6913 chr7 155437183 155437847 + 268 NA 5' UTR (NM_053043, exon 1 of 18) 5' UTR (NM_053043, exon 1 of 18) 312 NM_053043 155435 Hs.591815 NM_053043 HPRD:17310 RBM33 PRR8 RNA binding motif protein 33 protein-coding 561_WT_peak_146 chr1 28974376 28974827 + 268 NA promoter-TSS (NR_004407) promoter-TSS (NR_004407) -511 NR_004407 26824 Hs.640266 NR_004407 ENSG00000270103 RNU11 RNU11-1|U11 RNA, U11 small nuclear snRNA 561_WT_peak_3034 chr17 8076369 8077082 + 268 NA 3' UTR (NM_032354, exon 5 of 5) 3' UTR (NM_032354, exon 5 of 5) 2989 NM_183065 84314 Hs.513933 NM_032354 TMEM107 GRVS638|PRO1268 transmembrane protein 107 protein-coding 561_WT_peak_3634 chr19 12792293 12792879 + 267 NA promoter-TSS (NM_001206974) promoter-TSS (NM_001206974) 115 NM_013406 1725 Hs.79064 NM_001930 HPRD:02969 DHPS DHS|DS|MIG13 deoxyhypusine synthase protein-coding 561_WT_peak_4817 chr21 45079157 45079463 + 267 NA promoter-TSS (NM_007031) promoter-TSS (NM_007031) 64 NM_007031 11077 Hs.406157 NM_007031 HPRD:05186 HSF2BP - heat shock transcription factor 2 binding protein protein-coding 561_WT_peak_3812 chr19 46386695 46386970 + 267 NA TTS (NM_015649) TTS (NM_015649) 2544 NM_015649 26145 Hs.515477 NM_015649 HPRD:17159 IRF2BP1 - interferon regulatory factor 2 binding protein 1 protein-coding 561_WT_peak_7581 chrX 73833982 73834659 + 267 NA 5' UTR (NM_183353, exon 1 of 5) 5' UTR (NM_183353, exon 1 of 5) 141 NM_183353 51132 Hs.653288 NM_016120 HPRD:02304 RLIM NY-REN-43|RNF12 ring finger protein, LIM domain interacting protein-coding 561_WT_peak_6377 chr6 76311632 76312475 + 267 NA 5' UTR (NM_015571, exon 1 of 24) 5' UTR (NM_015571, exon 1 of 24) 431 NM_001100409 26054 Hs.485784 NM_015571 HPRD:05417 SENP6 SSP1|SUSP1 SUMO1/sentrin specific peptidase 6 protein-coding 561_WT_peak_150 chr1 31538102 31538704 + 266 NA intron (NM_001020658, intron 1 of 21) intron (NM_001020658, intron 1 of 21) 161 NM_001020658 9698 Hs.281707 NM_014676 HPRD:06230 PUM1 HSPUM|PUMH|PUMH1|PUML1 pumilio RNA-binding family member 1 protein-coding 561_WT_peak_4954 chr22 43010321 43011023 + 266 NA promoter-TSS (NR_029422) promoter-TSS (NR_029422) 296 NR_103820 84271 Hs.505802 NM_032311 HPRD:17875 POLDIP3 PDIP46|SKAR polymerase (DNA-directed), delta interacting protein 3 protein-coding 561_WT_peak_248 chr1 54304051 54304450 + 266 NA promoter-TSS (NM_018087) promoter-TSS (NM_018087) -25 NR_033142 55706 Hs.476525 NM_018087 HPRD:08547 NDC1 NET3|TMEM48 NDC1 transmembrane nucleoporin protein-coding 561_WT_peak_5682 chr5 32585599 32586197 + 266 NA intron (NM_006713, intron 1 of 4) CpG 293 NM_006713 10923 Hs.229641 NM_006713 HPRD:02737 SUB1 P15|PC4|p14 SUB1 homolog (S. cerevisiae) protein-coding 561_WT_peak_7256 chr9 37119935 37120223 + 266 NA promoter-TSS (NM_001289120) promoter-TSS (NM_001289120) -390 NR_110317 84186 Hs.654700 NM_032226 HPRD:15703 ZCCHC7 AIR1 zinc finger, CCHC domain containing 7 protein-coding 561_WT_peak_4454 chr2 206950405 206951013 + 266 NA 5' UTR (NM_017759, exon 1 of 11) 5' UTR (NM_017759, exon 1 of 11) 197 NM_017759 54891 Hs.445036 NM_017759 HPRD:07894 INO80D - INO80 complex subunit D protein-coding 561_WT_peak_3040 chr17 8129433 8129674 + 266 NA non-coding (NR_046431, exon 22 of 22) non-coding (NR_046431, exon 22 of 22) -2192 NR_026951 284029 Hs.121692 NM_173621 HPRD:08755 LINC00324 C17orf44|NCRNA00324 long intergenic non-protein coding RNA 324 ncRNA 561_WT_peak_1075 chr10 85898589 85899008 + 266 NA promoter-TSS (NM_014394) promoter-TSS (NM_014394) -387 NM_014394 27069 Hs.352656 NM_014394 HPRD:17038 GHITM DERP2|HSPC282|MICS1|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 561_WT_peak_4307 chr2 133038462 133038692 + 265 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -23035 NR_027020 554226 Hs.380689 NR_027019 ENSG00000163046 ANKRD30BL ANKRD30BP3|NCRNA00164 ankyrin repeat domain 30B-like pseudo 561_WT_peak_3936 chr19 58898007 58898839 + 265 NA promoter-TSS (NM_001009) promoter-TSS (NM_001009) -198 NR_039910 100616168 NR_039910 miRBase:MI0017394 MIR4754 - microRNA 4754 ncRNA 561_WT_peak_3417 chr18 3450557 3450988 + 265 NA promoter-TSS (NM_173210) promoter-TSS (NM_173210) 602 NM_003244 7050 Hs.373550 NM_003244 HPRD:04023 TGIF1 HPE4|TGIF TGFB-induced factor homeobox 1 protein-coding 561_WT_peak_6794 chr7 102789536 102790281 + 263 NA promoter-TSS (NM_001122838) promoter-TSS (NM_001122838) -339 NM_001122838 222236 Hs.324271 NM_198990 HPRD:14809 NAPEPLD FMP30|NAPE-PLD N-acyl phosphatidylethanolamine phospholipase D protein-coding 561_WT_peak_196 chr1 40723222 40724022 + 262 NA promoter-TSS (NM_005857) promoter-TSS (NM_005857) -100 NM_005857 10269 Hs.132642 NM_005857 HPRD:07349 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 561_WT_peak_203 chr1 42922202 42922672 + 262 NA promoter-TSS (NM_001146192) promoter-TSS (NM_001146192) 272 NM_001077447 79717 Hs.706662 NM_024664 HPRD:07760 PPCS - phosphopantothenoylcysteine synthetase protein-coding 561_WT_peak_7369 chr9 100747380 100747947 + 262 NA intron (NM_006401, intron 1 of 6) CpG 2174 NM_006401 10541 Hs.730654 NM_006401 HPRD:09803 ANP32B APRIL|PHAPI2|SSP29 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B protein-coding 561_WT_peak_7170 chr8 141521445 141521835 + 262 NA promoter-TSS (NR_040712) promoter-TSS (NR_040712) 243 NR_023360 54108 Hs.279704 NM_017444 HPRD:06275 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 561_WT_peak_6326 chr6 42738735 42739613 + 261 NA Intergenic Intergenic -25290 NM_003192 6903 Hs.75064 NM_003192 HPRD:04276 TBCC CFC tubulin folding cofactor C protein-coding 561_WT_peak_1780 chr12 77157572 77158411 + 261 NA 5' UTR (NM_015336, exon 1 of 17) 5' UTR (NM_015336, exon 1 of 17) 137 NM_015336 23390 Hs.4014 NM_015336 HPRD:09697 ZDHHC17 HIP14|HIP3|HYPH zinc finger, DHHC-type containing 17 protein-coding 561_WT_peak_1869 chr12 113622858 113623286 + 261 NA promoter-TSS (NM_032848) promoter-TSS (NM_032848) 212 NM_001111322 79039 Hs.506861 NM_024072 HPRD:13129 DDX54 DP97 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 protein-coding 561_WT_peak_2029 chr13 45914909 45915368 + 260 NA promoter-TSS (NR_024458) promoter-TSS (NR_024458) 281 NM_003295 7178 Hs.374596 NM_003295 HPRD:15979 TPT1 HRF|TCTP|p02|p23 tumor protein, translationally-controlled 1 protein-coding 561_WT_peak_1980 chr13 31247965 31248337 + 260 NA Intergenic tRNA-Asn-AAC|tRNA|tRNA -39464 NM_001204406 241 Hs.507658 NM_001629 HPRD:04742 ALOX5AP FLAP arachidonate 5-lipoxygenase-activating protein protein-coding 561_WT_peak_6241 chr6 28831286 28831639 + 260 NA promoter-TSS (NR_033379).3 promoter-TSS (NR_033379).3 -8 NR_033379 401242 Hs.448285 NR_033379 ENSG00000225595 LOC401242 - uncharacterized LOC401242 ncRNA 561_WT_peak_5795 chr5 69345189 69345729 + 258 NA 5' UTR (NM_022877, exon 1 of 7) 5' UTR (NM_022877, exon 1 of 7) 109 NM_022874 6606 Hs.535788 NM_000344 HPRD:02646 SMN1 BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A survival of motor neuron 1, telomeric protein-coding 561_WT_peak_429 chr1 144491182 144491803 + 258 NA intron (NM_001278267, intron 52 of 130) U1|snRNA|snRNA 121227 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 561_WT_peak_2568 chr15 79152794 79153093 + 258 NA Intergenic tRNA-Lys-AAG|tRNA|tRNA -12180 NM_001265603 10933 Hs.374503 NM_006791 HPRD:09532 MORF4L1 Eaf3|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 561_WT_peak_4431 chr2 201675789 201677128 + 258 NA promoter-TSS (NM_001207068) promoter-TSS (NM_001207068) 189 NM_001207067 9689 Hs.355983 NM_014670 HPRD:16570 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 561_WT_peak_547 chr1 155214170 155214809 + 257 NA 5' UTR (NM_001171811, exon 1 of 10) 5' UTR (NM_001171811, exon 1 of 10) 164 NM_001005741 2629 Hs.282997 NM_000157 HPRD:06973 GBA GBA1|GCB|GLUC glucosidase, beta, acid protein-coding 561_WT_peak_818 chr1 237766394 237766624 + 257 NA intron (NM_001035, intron 35 of 104) LSU-rRNA_Hsa|rRNA|rRNA -258966 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 561_WT_peak_1437 chr11 85195087 85195274 + 257 NA intron (NM_001142699, intron 3 of 27) LSU-rRNA_Hsa|rRNA|rRNA 143134 NM_001142699 1740 Hs.367656 NM_001364 HPRD:04663 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs, large homolog 2 (Drosophila) protein-coding 561_WT_peak_6293 chr6 33168079 33168404 + 257 NA promoter-TSS (NM_006979) promoter-TSS (NM_006979) 232 NM_021976 6257 Hs.388034 NM_021976 HPRD:01578 RXRB DAUDI6|H-2RIIBP|NR2B2|RCoR-1 retinoid X receptor, beta protein-coding 561_WT_peak_3906 chr19 56652174 56652578 + 257 NA promoter-TSS (NM_018337) promoter-TSS (NM_018337) -159 NM_001253792 55311 Hs.24545 NM_018337 HPRD:08488 ZNF444 EZF-2|EZF2|ZSCAN17 zinc finger protein 444 protein-coding 561_WT_peak_4516 chr2 238907245 238907526 + 257 NA intron (NR_037904, intron 4 of 18) L1ME2|LINE|L1 29950 NM_001278305 140739 Hs.471785 NM_080678 HPRD:14812 UBE2F NCE2 ubiquitin-conjugating enzyme E2F (putative) protein-coding 561_WT_peak_7442 chr9 131418870 131419560 + 257 NA promoter-TSS (NM_052844) promoter-TSS (NM_052844) -86 NM_052844 89891 Hs.495240 NM_052844 HPRD:15666 WDR34 DIC5|FAP133|SRTD11|bA216B9.3 WD repeat domain 34 protein-coding 561_WT_peak_803 chr1 235098937 235099387 + 257 NA Intergenic Intergenic 192090 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 561_WT_peak_6213 chr6 27763553 27763851 + 256 NA Intergenic tRNA-Gln-CAA|tRNA|tRNA 12007 NM_003519 8340 Hs.137594 NM_003519 HPRD:11898 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1, H2bl protein-coding 561_WT_peak_5008 chr3 12705034 12706024 + 256 NA 5' UTR (NM_002880, exon 1 of 17) 5' UTR (NM_002880, exon 1 of 17) 171 NM_002880 5894 Hs.159130 NM_002880 HPRD:01265 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 561_WT_peak_5619 chr4 152020280 152021180 + 256 NA promoter-TSS (NM_001006) promoter-TSS (NM_001006) 5 NM_001267699 6189 Hs.356572 NM_001006 HPRD:01606 RPS3A FTE1|MFTL|S3A ribosomal protein S3A protein-coding 561_WT_peak_6059 chr5 180633793 180634124 + 256 NA Intergenic Intergenic -1665 NM_203293 81786 Hs.487412 NM_033342 HPRD:11648 TRIM7 GNIP|RNF90 tripartite motif containing 7 protein-coding 561_WT_peak_388 chr1 113162064 113162937 + 255 NA promoter-TSS (NM_017744) promoter-TSS (NM_017744) 425 NM_006135 829 Hs.744974 NM_006135 HPRD:03347 CAPZA1 CAPPA1|CAPZ|CAZ1 capping protein (actin filament) muscle Z-line, alpha 1 protein-coding 561_WT_peak_6234 chr6 27870571 27870928 + 254 NA Intergenic tRNA-Gly-GGY|tRNA|tRNA 9425 NM_033057 81697 Hs.307111 NM_033057 HPRD:17695 OR2B2 OR2B2Q|OR2B9|OR6-1|dJ193B12.4|hs6M1-10 olfactory receptor, family 2, subfamily B, member 2 protein-coding 561_WT_peak_3319 chr17 66015880 66016301 + 254 NA Intergenic Intergenic -15758 NM_002266 3838 Hs.594238 NM_002266 HPRD:02818 KPNA2 IPOA1|QIP2|RCH1|SRP1alpha karyopherin alpha 2 (RAG cohort 1, importin alpha 1) protein-coding 561_WT_peak_7075 chr8 96281748 96282068 + 254 NA promoter-TSS (NM_177965) promoter-TSS (NM_177965) -446 NM_177965 157657 Hs.548157 NM_177965 HPRD:14104 C8orf37 CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 561_WT_peak_3208 chr17 43661979 43662621 + 253 NA Intergenic CpG 17448 NR_026901 644172 Hs.448859 NR_026901 LOC644172 - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo 561_WT_peak_2892 chr16 70473076 70473450 + 253 NA promoter-TSS (NM_006927) promoter-TSS (NM_006927) -272 NM_006927 6483 Hs.368611 NM_006927 HPRD:06220 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 561_WT_peak_4771 chr21 34143903 34144624 + 253 NA promoter-TSS (NM_016631) promoter-TSS (NM_016631) -94 NM_016631 94104 Hs.644004 NM_013329 HPRD:10761 PAXBP1 BM020|C21orf66|FSAP105|GCFC|GCFC1 PAX3 and PAX7 binding protein 1 protein-coding 561_WT_peak_490 chr1 149605788 149606444 + 253 NA TTS (NR_125392) TTS (NR_125392) 199 NR_125392 101954268 NR_125392 RNVU1-20 RNU1-110|vU1.20 RNA, variant U1 small nuclear 20 snRNA 561_WT_peak_753 chr1 226187291 226187784 + 253 NA promoter-TSS (NM_152608) promoter-TSS (NM_152608) -471 NM_152608 163859 Hs.520192 NM_152608 HPRD:08180 SDE2 C1orf55|dJ671D7.1 SDE2 telomere maintenance homolog (S. pombe) protein-coding 561_WT_peak_1920 chr12 125412289 125412643 + 252 NA Intergenic Intergenic 12373 NR_049820 100847004 NR_049820 miRBase:MI0018167 MIR5188 - microRNA 5188 ncRNA 561_WT_peak_1741 chr12 58138374 58138703 + 252 NA promoter-TSS (NM_005981) promoter-TSS (NM_005981) -246 NM_005981 6302 Hs.632708 NM_005981 HPRD:01626 TSPAN31 SAS tetraspanin 31 protein-coding 561_WT_peak_817 chr1 236958642 236959204 + 252 NA 5' UTR (NM_000254, exon 1 of 33) 5' UTR (NM_000254, exon 1 of 33) 342 NM_000254 4548 Hs.498187 NM_000254 HPRD:01136 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 561_WT_peak_1503 chr11 118661189 118662552 + 252 NA promoter-TSS (NM_001257191) promoter-TSS (NM_001257191) 102 NM_004397 1656 Hs.408461 NM_004397 DDX6 HLR2|P54|RCK DEAD (Asp-Glu-Ala-Asp) box helicase 6 protein-coding 561_WT_peak_5754 chr5 54603560 54604106 + 252 NA promoter-TSS (NM_019030) promoter-TSS (NM_019030) 257 NM_015360 23517 Hs.274531 NM_015360 HPRD:13777 SKIV2L2 Dob1|KIAA0052|Mtr4|fSAP118 superkiller viralicidic activity 2-like 2 (S. cerevisiae) protein-coding 561_WT_peak_3305 chr17 62915353 62915852 + 251 NA promoter-TSS (NM_199340) promoter-TSS (NM_199340) -699 NM_199340 374819 Hs.551962 NM_199340 ENSG00000176809 LRRC37A3 LRRC37|LRRC37A leucine rich repeat containing 37, member A3 protein-coding 561_WT_peak_6829 chr7 120590464 120591196 + 251 NA promoter-TSS (NM_019071) promoter-TSS (NM_019071) 13 NM_198267 54556 Hs.489811 NM_019071 HPRD:06321 ING3 Eaf4|ING2|MEAF4|p47ING3 inhibitor of growth family, member 3 protein-coding 561_WT_peak_6826 chr7 117823435 117824589 + 251 NA promoter-TSS (NM_016200) promoter-TSS (NM_016200) -74 NM_016200 51691 Hs.655046 NM_016200 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 561_WT_peak_1750 chr12 65563151 65563700 + 250 NA promoter-TSS (NM_001167614) promoter-TSS (NM_001167614) 74 NM_001167614 23592 Hs.744150 NM_014319 HPRD:09704 LEMD3 MAN1 LEM domain containing 3 protein-coding 561_WT_peak_4579 chr20 23330767 23331175 + 250 NA promoter-TSS (NM_013248) promoter-TSS (NM_013248) -402 NM_013248 29107 Hs.516933 NM_013248 HPRD:16159 NXT1 MTR2|P15 nuclear transport factor 2-like export factor 1 protein-coding 561_WT_peak_5293 chr3 154041879 154042270 + 250 NA exon (NM_001114397, exon 1 of 25) exon (NM_001114397, exon 1 of 25) 212 NM_020865 170506 Hs.446270 NM_020865 HPRD:09918 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH (Asp-Glu-Ala-His) box polypeptide 36 protein-coding 561_WT_peak_7107 chr8 109260612 109261028 + 249 NA intron (NM_001568, intron 1 of 12) CpG 139 NM_001568 3646 Hs.405590 NM_001568 HPRD:03734 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3, subunit E protein-coding 561_WT_peak_5178 chr3 101292999 101293478 + 249 NA intron (NM_020357, intron 1 of 4) CpG 196 NM_020357 57092 Hs.744968 NM_020357 HPRD:17826 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 561_WT_peak_3536 chr18 76829344 76829680 + 249 NA exon (NM_198531, exon 1 of 30) exon (NM_198531, exon 1 of 30) 115 NM_198531 374868 Hs.465475 NM_198531 HPRD:16528 ATP9B ATPASEP|ATPIIB|NEO1L|hMMR1 ATPase, class II, type 9B protein-coding 561_WT_peak_351 chr1 109203477 109204260 + 249 NA promoter-TSS (NM_001102592) promoter-TSS (NM_001102592) -124 NM_001102592 113802 Hs.7962 NM_144584 HPRD:08086 HENMT1 C1orf59|HEN1 HEN1 methyltransferase homolog 1 (Arabidopsis) protein-coding 561_WT_peak_1511 chr11 122619746 122619971 + 249 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) -89397 NM_019604 56253 Hs.159523 NM_019604 HPRD:16760 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 561_WT_peak_7166 chr8 134581085 134581417 + 249 NA intron (NM_173344, intron 1 of 9) intron (NM_173344, intron 1 of 9) 2932 NM_173344 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 561_WT_peak_6122 chr6 20534636 20534940 + 249 NA promoter-TSS (NM_017774) promoter-TSS (NM_017774) 100 NM_017774 54901 Hs.657604 NM_017774 HPRD:13022 CDKAL1 - CDK5 regulatory subunit associated protein 1-like 1 protein-coding 561_WT_peak_3142 chr17 36452947 36453339 + 249 NA 5' UTR (NM_001278279, exon 1 of 7) 5' UTR (NM_001278279, exon 1 of 7) 154 NM_032351 84311 Hs.537279 NM_032351 HPRD:14764 MRPL45 L45mt|MRP-L45 mitochondrial ribosomal protein L45 protein-coding 561_WT_peak_1846 chr12 109915283 109915707 + 249 NA promoter-TSS (NM_183415) promoter-TSS (NM_183415) 67 NM_183415 89910 Hs.374067 NM_130466 HPRD:06993 UBE3B BPIDS ubiquitin protein ligase E3B protein-coding 561_WT_peak_180 chr1 36614956 36615384 + 249 NA promoter-TSS (NR_073098) promoter-TSS (NR_073098) -55 NM_014408 27095 Hs.523131 NM_014408 HPRD:11644 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 561_WT_peak_1797 chr12 92987712 92988108 + 248 NA Intergenic L2c|LINE|L2 -108709 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000214215 C12orf74 - chromosome 12 open reading frame 74 protein-coding 561_WT_peak_3608 chr19 8766977 8767193 + 248 NA Intergenic Intergenic 42095 NM_178525 284382 Hs.209206 NM_178525 HPRD:14562 ACTL9 - actin-like 9 protein-coding 561_WT_peak_2693 chr16 10964788 10965276 + 248 NA Intergenic Intergenic -6023 NM_000246 4261 Hs.701991 NM_000246 HPRD:02475 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II, major histocompatibility complex, transactivator protein-coding 561_WT_peak_7211 chr9 7976292 7976696 + 248 NA Intergenic MIRb|SINE|MIR -176695 NM_033428 90871 Hs.7517 NM_033428 HPRD:12939 TMEM261 C9orf123 transmembrane protein 261 protein-coding 561_WT_peak_5374 chr3 196695976 196696333 + 248 NA promoter-TSS (NM_025163) promoter-TSS (NM_025163) -412 NM_025163 80235 Hs.518403 NM_025163 HPRD:18076 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis, class Z protein-coding 561_WT_peak_7644 chrY 10035312 10035554 + 248 NA Intergenic SSU-rRNA_Hsa|rRNA|rRNA 287026 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 561_WT_peak_6233 chr6 27861245 27861902 + 247 NA promoter-TSS (NM_003514) promoter-TSS (NM_003514) 370 NM_003527 8348 Hs.484991 NM_003527 HPRD:11904 HIST1H2BO H2B.2|H2B/n|H2BFN|dJ193B12.2 histone cluster 1, H2bo protein-coding 561_WT_peak_2507 chr15 63796013 63796908 + 247 NA promoter-TSS (NR_046341) promoter-TSS (NR_046341) -250 NR_046341 9960 Hs.458499 NM_006537 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 561_WT_peak_6249 chr6 28949860 28950153 + 247 NA Intergenic tRNA-Glu-GAG_|tRNA|tRNA 23031 NM_001010877 282890 Hs.148218 NM_001010877 HPRD:18325 ZNF311 zf31 zinc finger protein 311 protein-coding 561_WT_peak_5915 chr5 132387142 132387921 + 247 NA promoter-TSS (NM_002154) promoter-TSS (NM_002154) -131 NM_002154 3308 Hs.90093 NM_002154 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock 70kDa protein 4 protein-coding 561_WT_peak_2974 chr17 1945230 1945559 + 246 NA exon (NM_080822, exon 1 of 2) exon (NM_080822, exon 1 of 2) 117 NM_080822 124641 Hs.513856 NM_080822 HPRD:07437 OVCA2 - ovarian tumor suppressor candidate 2 protein-coding 561_WT_peak_6780 chr7 100472165 100472711 + 246 NA promoter-TSS (NM_015908) promoter-TSS (NM_015908) -263 NM_001128854 51593 Hs.111801 NM_015908 HPRD:10665 SRRT ARS2|ASR2|serrate serrate, RNA effector molecule protein-coding 561_WT_peak_2057 chr13 51483844 51484586 + 246 NA exon (NM_001142279, exon 1 of 10) exon (NM_001142279, exon 1 of 10) 401 NM_001142279 79621 Hs.306291 NM_024570 ENSG00000136104 RNASEH2B AGS2|DLEU8 ribonuclease H2, subunit B protein-coding 561_WT_peak_5085 chr3 45430052 45430315 + 246 NA intron (NM_015340, intron 1 of 21) CpG 108 NM_015340 23395 Hs.526975 NM_015340 HPRD:05178 LARS2 LEURS|PRLTS4 leucyl-tRNA synthetase 2, mitochondrial protein-coding 561_WT_peak_1063 chr10 76586350 76586658 + 246 NA 5' UTR (NM_001256468, exon 1 of 18) 5' UTR (NM_001256468, exon 1 of 18) 333 NM_012330 23522 Hs.35758 NM_012330 HPRD:07065 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf K(lysine) acetyltransferase 6B protein-coding 561_WT_peak_6917 chr7 156716115 156716480 + 246 NA Intergenic LTR62|LTR|ERVL -26120 NM_138400 64434 Hs.15825 NM_138400 HPRD:18485 NOM1 C7orf3|PPP1R113|SGD1 nucleolar protein with MIF4G domain 1 protein-coding 561_WT_peak_616 chr1 171454637 171455282 + 246 NA intron (NM_015172, intron 1 of 33) CpG 293 NM_015172 23215 Hs.494614 NM_015172 HPRD:16539 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline-rich coiled-coil 2C protein-coding 561_WT_peak_7084 chr8 101513970 101514152 + 245 NA Intergenic LTR54|LTR|ERV1 57878 NM_001270378 157567 Hs.530199 NM_198401 HPRD:14103 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 561_WT_peak_385 chr1 112298395 112298856 + 245 NA promoter-TSS (NM_198926) promoter-TSS (NM_198926) -206 NM_198926 55924 Hs.193406 NM_019099 HPRD:14246 FAM212B C1orf183 family with sequence similarity 212, member B protein-coding 561_WT_peak_6574 chr7 2598457 2598749 + 245 NA promoter-TSS (NM_001287500) promoter-TSS (NM_001287500) -3 NM_001287502 23288 Hs.520627 NM_152558 HPRD:11050 IQCE 1700028P05Rik IQ motif containing E protein-coding 561_WT_peak_6883 chr7 148638106 148638720 + 244 NA Intergenic Intergenic -56972 NM_001203248 2146 Hs.444082 NM_004456 HPRD:03342 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 561_WT_peak_3224 chr17 46124982 46125474 + 244 NA promoter-TSS (NM_003204) promoter-TSS (NM_003204) -458 NM_003204 4779 Hs.514284 NM_003204 HPRD:01223 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2-like 1 protein-coding 561_WT_peak_7382 chr9 108167740 108168111 + 244 NA Intergenic L1MB5|LINE|L1 -42390 NM_001287191 83856 Hs.136901 NM_031919 HPRD:14641 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1-like protein-coding 561_WT_peak_2807 chr16 33965471 33965714 + 244 NA Intergenic CpG -3089 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 561_WT_peak_4064 chr2 48133938 48134597 + 244 NA Intergenic Intergenic -1335 NM_001190274 80204 Hs.352677 NM_012167 HPRD:06985 FBXO11 FBX11|PRMT9|UBR6|VIT1 F-box protein 11 protein-coding 561_WT_peak_558 chr1 156186318 156186577 + 243 NA intron (NM_001199664, intron 1 of 4) CpG 3668 NM_001199663 100527963 Hs.530479 NM_001199661 ENSG00000260238 PMF1-BGLAP PMF1 PMF1-BGLAP readthrough protein-coding 561_WT_peak_4308 chr2 133039002 133039188 + 243 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -23553 NR_027020 554226 Hs.380689 NR_027019 ENSG00000163046 ANKRD30BL ANKRD30BP3|NCRNA00164 ankyrin repeat domain 30B-like pseudo 561_WT_peak_6692 chr7 66309858 66310378 + 242 NA promoter-TSS (NR_003934) promoter-TSS (NR_003934) -305 NR_003934 729156 Hs.709878 NR_003934 ENSG00000230583 GTF2IRD1P1 - GTF2I repeat domain containing 1 pseusogene 1 pseudo 561_WT_peak_5299 chr3 156877168 156878517 + 242 NA exon (NM_020307, exon 1 of 11) exon (NM_020307, exon 1 of 11) 640 NM_020307 57018 Hs.4859 NM_020307 CCNL1 ANIA6A|PRO1073|ania-6a cyclin L1 protein-coding 561_WT_peak_2312 chr14 81685769 81686495 + 242 NA intron (NM_201595, intron 1 of 8) intron (NM_201595, intron 1 of 8) 1164 NM_001278940 2957 Hs.592334 NM_015859 HPRD:02748 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA, 1, 19/37kDa protein-coding 561_WT_peak_1900 chr12 122240496 122240985 + 242 NA intron (NR_002809, intron 1 of 6) intron (NR_002809, intron 1 of 6) 650 NR_002809 338799 Hs.524804 NR_002809 ENSG00000212694 LINC01089 - long intergenic non-protein coding RNA 1089 ncRNA 561_WT_peak_7282 chr9 69381632 69381901 + 242 NA promoter-TSS (NM_001098805) promoter-TSS (NM_001098805) -215 NM_001098805 728747 Hs.645502 NM_001098805 ENSG00000172014 ANKRD20A4 - ankyrin repeat domain 20 family, member A4 protein-coding 561_WT_peak_4877 chr22 30752527 30752928 + 242 NA promoter-TSS (NM_001017437) promoter-TSS (NM_001017437) 100 NM_001017437 550631 Hs.505597 NM_001017437 HPRD:18686 CCDC157 - coiled-coil domain containing 157 protein-coding 561_WT_peak_3719 chr19 34662747 34663318 + 242 NA promoter-TSS (NM_001114093) promoter-TSS (NM_001114093) -320 NM_015578 26065 Hs.744009 NM_015578 HPRD:12697 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, SCD6 homolog A (S. cerevisiae) protein-coding 561_WT_peak_4219 chr2 97151606 97152259 + 242 NA Intergenic Intergenic 19190 NM_001285486 93082 Hs.149219 NM_001080535 HPRD:14296 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 561_WT_peak_561 chr1 156252330 156252855 + 241 NA promoter-TSS (NR_026678) promoter-TSS (NR_026678) 28 NM_015327 23381 Hs.516837 NM_015327 HPRD:16869 SMG5 EST1B|LPTS-RP1|LPTSRP1|SMG-5 SMG5 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_6190 chr6 27099848 27100560 + 240 NA promoter-TSS (NM_021064) promoter-TSS (NM_021064) 371 NM_021058 8970 Hs.591807 NM_021058 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1, H2bj protein-coding 561_WT_peak_2045 chr13 49136415 49136886 + 240 NA Intergenic Intergenic 18387 NR_051983 100129597 Hs.175225 NR_051983 ENSG00000233610 LINC00462 - long intergenic non-protein coding RNA 462 ncRNA 561_WT_peak_7127 chr8 123793912 123794762 + 240 NA intron (NM_014943, intron 1 of 3) CpG-25975 436 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 561_WT_peak_2478 chr15 50716119 50716736 + 240 NA promoter-TSS (NM_005154) promoter-TSS (NM_005154) -147 NM_005154 9101 Hs.443731 NM_005154 HPRD:04405 USP8 HumORF8|SPG59|UBPY ubiquitin specific peptidase 8 protein-coding 561_WT_peak_4587 chr20 25038744 25039344 + 240 NA promoter-TSS (NM_001252675) promoter-TSS (NM_001252675) -226 NM_001252677 84532 Hs.529353 NM_032501 HPRD:12413 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short-chain family member 1 protein-coding 561_WT_peak_608 chr1 167905413 167906246 + 240 NA promoter-TSS (NM_018442) promoter-TSS (NM_018442) 32 NM_018442 55827 Hs.435741 NM_018442 HPRD:17156 DCAF6 1200006M05Rik|ARCAP|IQWD1|MSTP055|NRIP|PC326 DDB1 and CUL4 associated factor 6 protein-coding 561_WT_peak_4725 chr20 62339158 62339472 + 239 NA promoter-TSS (NM_001267546) promoter-TSS (NM_001267546) 50 NM_001267545 10139 Hs.389277 NM_003224 HPRD:05264 ARFRP1 ARL18|ARP|Arp1 ADP-ribosylation factor related protein 1 protein-coding 561_WT_peak_219 chr1 45805568 45806276 + 238 NA promoter-TSS (NM_001048174) promoter-TSS (NM_001048174) -134 NM_001293196 4595 Hs.271353 NM_012222 HPRD:05380 MUTYH MYH mutY homolog protein-coding 561_WT_peak_4280 chr2 120980440 120981194 + 238 NA 5' UTR (NM_024121, exon 1 of 1) 5' UTR (NM_024121, exon 1 of 1) 167 NM_024121 79134 Hs.376722 NM_024121 TMEM185B FAM11B transmembrane protein 185B protein-coding 561_WT_peak_3992 chr2 26407379 26407775 + 238 NA exon (NM_001191033, exon 3 of 6) exon (NM_001191033, exon 3 of 6) 3992 NM_001191033 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREML FAM59B GRB2 associated, regulator of MAPK1-like protein-coding 561_WT_peak_7544 chrX 48931695 48931988 + 238 NA promoter-TSS (NM_007213) promoter-TSS (NM_007213) -137 NM_007213 11230 Hs.29595 NM_007213 HPRD:06596 PRAF2 - PRA1 domain family, member 2 protein-coding 561_WT_peak_692 chr1 204485356 204485806 + 237 NA promoter-TSS (NM_001204172) promoter-TSS (NM_001204172) 74 NM_001278517 4194 Hs.497492 NM_002393 HPRD:04082 MDM4 HDMX|MDMX|MRP1 MDM4, p53 regulator protein-coding 561_WT_peak_3850 chr19 49631086 49631361 + 237 NA non-coding (NR_103842, exon 2 of 29) non-coding (NR_103842, exon 2 of 29) 8577 NR_103842 8541 Hs.413748 NM_003660 HPRD:04393 PPFIA3 LPNA3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 protein-coding 561_WT_peak_2271 chr14 70826178 70826617 + 237 NA promoter-TSS (NM_016468) promoter-TSS (NM_016468) 51 NM_001204090 51241 Hs.709581 NM_016468 HPRD:16591 COX16 C14orf112 COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) protein-coding 561_WT_peak_1678 chr12 49075597 49076130 + 236 NA intron (NM_017822, intron 1 of 9) CpG 172 NM_017822 54934 Hs.505412 NM_017822 HPRD:07907 KANSL2 C12orf41|NSL2 KAT8 regulatory NSL complex subunit 2 protein-coding 561_WT_peak_5320 chr3 170587668 170588278 + 236 NA promoter-TSS (NM_001099645) promoter-TSS (NM_001099645) 72 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22-like 1 protein-coding 561_WT_peak_5043 chr3 28368045 28368379 + 236 NA intron (NM_001271650, intron 8 of 8) intron (NM_001271650, intron 8 of 8) 22406 NM_001134433 64343 Hs.706676 NM_022461 HPRD:10577 AZI2 AZ2|NAP1|TILP 5-azacytidine induced 2 protein-coding 561_WT_peak_5307 chr3 160167709 160168014 + 236 NA promoter-TSS (NM_173084) promoter-TSS (NM_173084) -235 NM_173084 286827 Hs.212957 NM_173084 HPRD:15568 TRIM59 MRF1|RNF104|TRIM57|TSBF1 tripartite motif containing 59 protein-coding 561_WT_peak_6120 chr6 20402118 20402446 + 236 NA 5' UTR (NM_001949, exon 1 of 7) 5' UTR (NM_001949, exon 1 of 7) 145 NM_001949 1871 Hs.269408 NM_001949 HPRD:02693 E2F3 E2F-3 E2F transcription factor 3 protein-coding 561_WT_peak_1937 chr12 133841602 133841950 + 236 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat -29354 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 561_WT_peak_238 chr1 52870183 52870670 + 236 NA promoter-TSS (NM_004153) promoter-TSS (NM_004153) 207 NM_032864 84950 Hs.5301 NM_032284 PRPF38A Prp38 pre-mRNA processing factor 38A protein-coding 561_WT_peak_5722 chr5 43040342 43040711 + 235 NA promoter-TSS (NM_001014279) promoter-TSS (NM_001014279) -79 NM_001014279 389289 Hs.529385 NM_001014279 ANXA2R AX2R|AXIIR|C5orf39 annexin A2 receptor protein-coding 561_WT_peak_4306 chr2 133038194 133038400 + 235 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -22755 NR_027020 554226 Hs.380689 NR_027019 ENSG00000163046 ANKRD30BL ANKRD30BP3|NCRNA00164 ankyrin repeat domain 30B-like pseudo 561_WT_peak_6270 chr6 30875770 30876060 + 235 NA promoter-TSS (NM_001517).2 promoter-TSS (NM_001517).2 -62 NM_001517 2968 Hs.485070 NM_001517 HPRD:03456 GTF2H4 P52|TFB2|TFIIH general transcription factor IIH, polypeptide 4, 52kDa protein-coding 561_WT_peak_493 chr1 149804017 149805002 + 235 NA exon (NM_001034077, exon 1 of 1) exon (NM_001034077, exon 1 of 1) 288 NM_001034077 554313 Hs.55468 NM_001034077 ENSG00000182217 HIST2H4B H4/o histone cluster 2, H4b protein-coding 561_WT_peak_3686 chr19 19029869 19030220 + 234 NA promoter-TSS (NM_019070) promoter-TSS (NM_019070) 155 NM_199442 11316 Hs.10326 NM_007263 HPRD:06089 COPE epsilon-COP coatomer protein complex, subunit epsilon protein-coding 561_WT_peak_4803 chr21 42733861 42734364 + 234 NA intron (NM_002463, intron 1 of 13) intron (NM_002463, intron 1 of 13) 162 NM_002463 4600 Hs.926 NM_002463 HPRD:01001 MX2 MXB MX dynamin-like GTPase 2 protein-coding 561_WT_peak_1022 chr10 70090921 70092659 + 234 NA promoter-TSS (NM_012207) promoter-TSS (NM_012207) 22 NM_021644 3189 Hs.643472 NM_012207 HPRD:03818 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) protein-coding 561_WT_peak_6136 chr6 26021740 26022392 + 234 NA TTS (NM_003529) TTS (NM_003529) 159 NM_003538 8359 Hs.248178 NM_003538 HPRD:04157 HIST1H4A H4FA histone cluster 1, H4a protein-coding 561_WT_peak_1730 chr12 56862268 56862581 + 233 NA exon (NM_207344, exon 1 of 2) exon (NM_207344, exon 1 of 2) 123 NM_207344 283377 Hs.128676 NM_207344 HPRD:11251 SPRYD4 - SPRY domain containing 4 protein-coding 561_WT_peak_287 chr1 70819780 70820434 + 233 NA promoter-TSS (NM_001036645) promoter-TSS (NM_001036645) 310 NM_030816 81573 Hs.744989 NM_030816 HPRD:13176 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 561_WT_peak_3002 chr17 5389825 5390282 + 233 NA promoter-TSS (NM_016041) promoter-TSS (NM_016041) -160 NM_024039 79003 Hs.267194 NM_024039 HPRD:12379 MIS12 2510025F08Rik|KNTC2AP|MTW1|hMis12 MIS12 kinetochore complex component protein-coding 561_WT_peak_5289 chr3 150920780 150921155 + 233 NA promoter-TSS (NM_013308) promoter-TSS (NM_013308) 21 NM_013308 29909 Hs.549152 NM_013308 HPRD:17071 GPR171 H963 G protein-coupled receptor 171 protein-coding 561_WT_peak_6811 chr7 106408098 106408377 + 233 NA Intergenic LTR62|LTR|ERVL -97486 NM_001282426 5294 Hs.32942 NM_002649 HPRD:03135 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma protein-coding 561_WT_peak_1941 chr13 20531566 20532583 + 233 NA promoter-TSS (NM_001190965) promoter-TSS (NM_001190965) -736 NM_003453 7750 Hs.507433 NM_003453 HPRD:03745 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger, MYM-type 2 protein-coding 561_WT_peak_1782 chr12 82751927 82752642 + 233 NA promoter-TSS (NM_032230) promoter-TSS (NM_032230) 8 NM_032230 84190 Hs.506222 NM_032230 HPRD:10979 METTL25 C12orf26 methyltransferase like 25 protein-coding 561_WT_peak_3762 chr19 39935736 39936248 + 233 NA promoter-TSS (NM_001130825) promoter-TSS (NM_001130825) -194 NM_001130824 6829 Hs.631604 NM_003169 HPRD:03655 SUPT5H SPT5|SPT5H|Tat-CT1 suppressor of Ty 5 homolog (S. cerevisiae) protein-coding 561_WT_peak_4499 chr2 234176562 234176879 + 232 NA intron (NM_017974, intron 5 of 16) intron (NM_017974, intron 5 of 16) -7652 NR_003008 677775 Hs.663619 NR_003008 SCARNA5 U87 small Cajal body-specific RNA 5 ncRNA 561_WT_peak_2115 chr14 21101021 21101468 + 232 NA Intergenic Intergenic 8606 NM_001001968 341799 Hs.513132 NM_001001968 HPRD:17779 OR6S1 OR14-37|OR6S1Q olfactory receptor, family 6, subfamily S, member 1 protein-coding 561_WT_peak_165 chr1 33722539 33722967 + 232 NA intron (NM_152493, intron 1 of 8) intron (NM_152493, intron 1 of 8) 579 NM_152493 149076 Hs.743358 NM_152493 HPRD:13394 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 561_WT_peak_4495 chr2 232571468 232573258 + 232 NA promoter-TSS (NM_001099285) promoter-TSS (NM_001099285) -872 NM_002823 5757 Hs.459927 NM_002823 HPRD:01778 PTMA TMSA prothymosin, alpha protein-coding 561_WT_peak_1184 chr11 1331034 1331542 + 232 NA promoter-TSS (NM_019009) promoter-TSS (NM_019009) 350 NR_029409 255512 Hs.588291 NR_029409 ENSG00000255153 TOLLIP-AS1 - TOLLIP antisense RNA 1 (head to head) ncRNA 561_WT_peak_540 chr1 154193441 154193953 + 231 NA promoter-TSS (NM_001297720) promoter-TSS (NM_001297720) 372 NM_001287816 9898 Hs.490551 NM_014847 HPRD:06665 UBAP2L NICE-4 ubiquitin associated protein 2-like protein-coding 561_WT_peak_6205 chr6 27447016 27447631 + 231 NA Intergenic Intergenic -6426 NM_007149 7738 Hs.158174 NM_007149 HPRD:03785 ZNF184 - zinc finger protein 184 protein-coding 561_WT_peak_3836 chr19 49122647 49123052 + 231 NA promoter-TSS (NM_001204159) promoter-TSS (NM_001204159) 59 NM_001204159 56848 Hs.528006 NM_020126 HPRD:06157 SPHK2 SK 2|SK-2|SPK 2|SPK-2 sphingosine kinase 2 protein-coding 561_WT_peak_7318 chr9 86237750 86238709 + 230 NA intron (NR_046421, intron 1 of 3) CpG 265 NR_046421 414328 Hs.530261 NM_001001551 IDNK C9orf103|bA522I20.2 idnK, gluconokinase homolog (E. coli) protein-coding 561_WT_peak_143 chr1 28655223 28655952 + 230 NA promoter-TSS (NM_017638) promoter-TSS (NM_017638) 74 NM_017638 54797 Hs.479911 NM_017638 HPRD:17476 MED18 p28b mediator complex subunit 18 protein-coding 561_WT_peak_1906 chr12 123237159 123237570 + 230 NA promoter-TSS (NM_003677) promoter-TSS (NM_003677) -7 NM_003677 8562 Hs.22393 NM_003677 HPRD:05182 DENR DRP|DRP1|SMAP-3 density-regulated protein protein-coding 561_WT_peak_2601 chr15 90808770 90809264 + 230 NA promoter-TSS (NR_102428) promoter-TSS (NR_102428) -26 NR_102428 10519 Hs.715556 NM_006384 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 (calmyrin) protein-coding 561_WT_peak_1324 chr11 62622846 62623393 + 230 NA promoter-TSS (NR_002563) promoter-TSS (NR_002563) -16 NR_002565 9303 NR_002565 ENSG00000255717 SNORD25 RNU25|U25 small nucleolar RNA, C/D box 25 snoRNA 561_WT_peak_5716 chr5 42992426 42992802 + 229 NA non-coding (NR_104643, exon 1 of 2) non-coding (NR_104643, exon 1 of 2) 821 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 561_WT_peak_1123 chr10 103113490 103113956 + 229 NA promoter-TSS (NM_001256856) promoter-TSS (NM_001256856) -67 NM_001256856 8945 Hs.643802 NM_003939 HPRD:04596 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 561_WT_peak_1886 chr12 120966700 120967058 + 229 NA promoter-TSS (NM_032314) promoter-TSS (NM_032314) 85 NM_032314 84274 Hs.17250 NM_032314 HPRD:17560 COQ5 - coenzyme Q5 homolog, methyltransferase (S. cerevisiae) protein-coding 561_WT_peak_1802 chr12 93861278 93861652 + 229 NA intron (NM_014050, intron 1 of 5) CpG 199 NM_014050 28977 Hs.199579 NM_014050 HPRD:14761 MRPL42 L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT mitochondrial ribosomal protein L42 protein-coding 561_WT_peak_290 chr1 75198687 75199210 + 229 NA promoter-TSS (NR_027962) promoter-TSS (NR_027962) 86 NR_027962 127253 Hs.348411 NM_138467 HPRD:14036 TYW3 C1orf171 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) protein-coding 561_WT_peak_2018 chr13 43151658 43151894 + 229 NA intron (NM_003701, intron 1 of 4) intron (NM_003701, intron 1 of 4) 3485 NM_003701 8600 Hs.333791 NM_003701 HPRD:04031 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TRANCE|hRANKL2|sOdf tumor necrosis factor (ligand) superfamily, member 11 protein-coding 561_WT_peak_355 chr1 109289107 109289766 + 228 NA intron (NM_007269, intron 1 of 18) CpG 151 NM_007269 6814 Hs.530436 NM_007269 HPRD:10517 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 561_WT_peak_562 chr1 156470772 156471204 + 228 NA promoter-TSS (NM_005920) promoter-TSS (NM_005920) -354 NM_005920 4209 Hs.314327 NM_005920 HPRD:02810 MEF2D - myocyte enhancer factor 2D protein-coding 561_WT_peak_467 chr1 147874641 147875193 + 228 NA intron (NR_111930, intron 1 of 8) U1|snRNA|snRNA 281 NR_111930 100132057 Hs.585189 NR_033189 LOC100132057 - phosphodiesterase 4D interacting protein pseudogene pseudo 561_WT_peak_2265 chr14 69259965 69260833 + 228 NA 5' UTR (NM_004926, exon 1 of 2) 5' UTR (NM_004926, exon 1 of 2) 232 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 561_WT_peak_4722 chr20 62199228 62199784 + 228 NA promoter-TSS (NM_033405) promoter-TSS (NM_033405) -399 NM_033405 85441 Hs.517180 NM_033405 HPRD:11459 HELZ2 PDIP-1|PRIC285 helicase with zinc finger 2, transcriptional coactivator protein-coding 561_WT_peak_6566 chr7 643953 644428 + 228 NA intron (NR_110055, intron 1 of 1) CpG 1155 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 561_WT_peak_5914 chr5 132361833 132362260 + 228 NA intron (NM_001300818, intron 1 of 3) CpG 229 NM_001300818 54819 Hs.29700 NM_017665 HPRD:15699 ZCCHC10 - zinc finger, CCHC domain containing 10 protein-coding 561_WT_peak_7136 chr8 125384535 125385172 + 228 NA promoter-TSS (NM_194291) promoter-TSS (NM_194291) 87 NM_194291 157378 Hs.187646 NM_194291 TMEM65 - transmembrane protein 65 protein-coding 561_WT_peak_1144 chr10 112174340 112174692 + 228 NA Intergenic Intergenic -83109 NM_004419 1847 Hs.2128 NM_004419 HPRD:04349 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 561_WT_peak_2136 chr14 23476387 23476779 + 228 NA intron (NM_001130706, intron 1 of 7) intron (NM_001130706, intron 1 of 7) 2827 NM_021944 60686 Hs.255874 NM_021944 HPRD:12662 C14orf93 - chromosome 14 open reading frame 93 protein-coding 561_WT_peak_5489 chr4 54930249 54930813 + 228 NA 5' UTR (NM_012110, exon 1 of 6) 5' UTR (NM_012110, exon 1 of 6) 284 NM_012110 26511 Hs.335393 NM_012110 HPRD:10373 CHIC2 BTL cysteine-rich hydrophobic domain 2 protein-coding 561_WT_peak_1862 chr12 112450602 112450898 + 227 NA promoter-TSS (NM_006817) promoter-TSS (NM_006817) 273 NM_001294314 89894 Hs.506815 NM_138341 HPRD:11275 TMEM116 - transmembrane protein 116 protein-coding 561_WT_peak_3257 chr17 55362318 55362830 + 227 NA intron (NM_138962, intron 5 of 13) intron (NM_138962, intron 5 of 13) 28200 NM_170721 124540 Hs.658922 NM_138962 HPRD:07438 MSI2 MSI2H musashi RNA-binding protein 2 protein-coding 561_WT_peak_6585 chr7 6769022 6769641 + 227 NA Intergenic CpG -5605 NR_002217 441194 Hs.715590 NR_002217 ENSG00000187953 PMS2CL PMS2P13 PMS2 C-terminal like pseudogene pseudo 561_WT_peak_3953 chr2 8685431 8685706 + 227 NA Intergenic Intergenic 38354 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LOC101929567 - uncharacterized LOC101929567 ncRNA 561_WT_peak_5724 chr5 43042107 43043269 + 227 NA non-coding (NR_015447, exon 1 of 2) non-coding (NR_015447, exon 1 of 2) 452 NR_015447 153684 Hs.259625 NR_015447 HPRD:14101 LOC153684 - uncharacterized LOC153684 ncRNA 561_WT_peak_215 chr1 45275032 45275455 + 227 NA intron (NM_001136537, intron 1 of 7) intron (NM_001136537, intron 1 of 7) 1089 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB (POZ) domain containing 19 protein-coding 561_WT_peak_6888 chr7 148788413 148788768 + 227 NA promoter-TSS (NM_152411) promoter-TSS (NM_152411) -721 NM_152411 136051 Hs.729572 NM_152411 HPRD:13232 ZNF786 - zinc finger protein 786 protein-coding 561_WT_peak_6423 chr6 107077183 107077711 + 227 NA promoter-TSS (NM_032730) promoter-TSS (NM_032730) 6 NM_018292 55278 Hs.406917 NM_018292 HPRD:15199 QRSL1 GatA glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 protein-coding 561_WT_peak_5224 chr3 119813958 119814612 + 226 NA Intergenic CpG -1021 NM_002093 2932 Hs.445733 NM_002093 HPRD:05418 GSK3B - glycogen synthase kinase 3 beta protein-coding 561_WT_peak_2628 chr15 98703575 98703952 + 226 NA Intergenic Intergenic -71781 NR_120325 101927332 NR_120325 LOC101927332 - uncharacterized LOC101927332 ncRNA 561_WT_peak_6143 chr6 26054996 26055391 + 226 NA TTS (NM_005319) TTS (NM_005319) 1506 NM_005319 3006 Hs.7644 NM_005319 HPRD:07514 HIST1H1C H1.2|H1C|H1F2|H1s-1 histone cluster 1, H1c protein-coding 561_WT_peak_5009 chr3 12882666 12883049 + 226 NA promoter-TSS (NM_001007074) promoter-TSS (NM_001007074) 224 NM_000994 6161 Hs.265174 NM_000994 HPRD:17995 RPL32 L32 ribosomal protein L32 protein-coding 561_WT_peak_6143-2 chr6 26055557 26056745 + 226 NA exon (NM_005319, exon 1 of 1) exon (NM_005319, exon 1 of 1) 548 NM_005319 3006 Hs.7644 NM_005319 HPRD:07514 HIST1H1C H1.2|H1C|H1F2|H1s-1 histone cluster 1, H1c protein-coding 561_WT_peak_2131 chr14 23298881 23299457 + 226 NA promoter-TSS (NM_181306) promoter-TSS (NM_181306) 77 NM_181305 122704 Hs.355935 NM_178336 HPRD:14770 MRPL52 - mitochondrial ribosomal protein L52 protein-coding 561_WT_peak_6964 chr8 29386910 29387321 + 226 NA Intergenic Intergenic -178848 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 561_WT_peak_4235 chr2 101618437 101619027 + 226 NA promoter-TSS (NM_001099693) promoter-TSS (NM_001099693) 41 NM_001098577 6160 Hs.469473 NM_000993 HPRD:17994 RPL31 L31 ribosomal protein L31 protein-coding 561_WT_peak_7398 chr9 116172579 116173308 + 226 NA promoter-TSS (NM_001278629) promoter-TSS (NM_001278629) 12 NR_027261 54107 Hs.108112 NM_017443 HPRD:06274 POLE3 CHARAC17|CHRAC17|YBL1|p17 polymerase (DNA directed), epsilon 3, accessory subunit protein-coding 561_WT_peak_369 chr1 110882010 110882387 + 226 NA promoter-TSS (NR_036595) promoter-TSS (NR_036595) 253 NM_022768 64783 Hs.435947 NM_022768 HPRD:05832 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 561_WT_peak_6081 chr6 2990054 2990793 + 226 NA non-coding (NR_026855, exon 2 of 2) non-coding (NR_026855, exon 2 of 2) 2222 NR_026856 401232 Hs.720158 NM_207495 HPRD:16819 LINC01011 DKFZP686I15217 long intergenic non-protein coding RNA 1011 ncRNA 561_WT_peak_6201 chr6 27144905 27145198 + 226 NA Intergenic tRNA-Ile-ATT|tRNA|tRNA 29646 NR_036096 100422934 NR_036096 miRBase:MI0014167 MIR3143 - microRNA 3143 ncRNA 561_WT_peak_779 chr1 228768326 228768561 + 226 NA Intergenic CpG -11951 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_694 chr1 205091290 205091622 + 226 NA promoter-TSS (NM_001193273) promoter-TSS (NM_001193273) -306 NM_001193272 5929 Hs.519230 NM_005057 HPRD:02826 RBBP5 RBQ3|SWD1 retinoblastoma binding protein 5 protein-coding 561_WT_peak_7018 chr8 49838123 49838386 + 226 NA Intergenic Intergenic -4255 NM_003068 6591 Hs.360174 NM_003068 HPRD:03689 SNAI2 SLUG|SLUGH1|SNAIL2|WS2D snail family zinc finger 2 protein-coding 561_WT_peak_243 chr1 53168850 53169242 + 225 NA Intergenic Intergenic -5008 NM_023077 65260 Hs.349905 NM_023077 COA7 C1orf163|RESA1|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 561_WT_peak_2148 chr14 24684958 24685426 + 225 NA promoter-TSS (NM_138476) promoter-TSS (NM_138476) 84 NM_001199821 145553 Hs.220963 NM_138476 HPRD:14695 MDP1 FN6PASE|MDP-1 magnesium-dependent phosphatase 1 protein-coding 561_WT_peak_4824 chr22 18121220 18121937 + 225 NA exon (NM_001270726, exon 1 of 6) exon (NM_001270726, exon 1 of 6) 228 NM_001270731 23786 Hs.631672 NM_015367 HPRD:09822 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2-like 13 (apoptosis facilitator) protein-coding 561_WT_peak_1409 chr11 73498773 73499276 + 225 NA exon (NM_016055, exon 1 of 8) exon (NM_016055, exon 1 of 8) 107 NM_016055 51642 Hs.503239 NM_016055 MRPL48 HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 561_WT_peak_7219 chr9 19127618 19128306 + 225 NA promoter-TSS (NR_038064) promoter-TSS (NR_038064) -358 NM_001122 123 Hs.3416 NM_001122 HPRD:00057 PLIN2 ADFP|ADRP perilipin 2 protein-coding 561_WT_peak_4563 chr20 10414670 10415264 + 224 NA promoter-TSS (NR_072977) promoter-TSS (NR_072977) -80 NM_170784 8195 Hs.472119 NM_018848 HPRD:05356 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 561_WT_peak_4484 chr2 227700202 227701144 + 223 NA promoter-TSS (NM_001167608) promoter-TSS (NM_001167608) 2 NM_001167608 84236 Hs.471514 NM_032276 HPRD:13206 RHBDD1 RRP4 rhomboid domain containing 1 protein-coding 561_WT_peak_6368 chr6 70506358 70506851 + 223 NA intron (NM_018368, intron 1 of 15) CpG 445 NM_018368 55788 Hs.271643 NM_018368 HPRD:12877 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 561_WT_peak_2952 chr16 89307647 89307977 + 223 NA Intergenic LTR55|LTR|ERV 23701 NM_182531 197320 Hs.647385 NM_182531 HPRD:08111 ZNF778 - zinc finger protein 778 protein-coding 561_WT_peak_2691 chr16 9186246 9186806 + 223 NA intron (NM_014117, intron 1 of 3) CpG-8843 989 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 561_WT_peak_1091 chr10 91461272 91461627 + 223 NA intron (NM_001284259, intron 1 of 32) CpG 102 NM_016195 9585 Hs.240 NM_016195 HPRD:09268 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 561_WT_peak_2898 chr16 71842373 71843016 + 223 NA 5' UTR (NM_001128, exon 1 of 23) 5' UTR (NM_001128, exon 1 of 23) 282 NM_001030007 164 Hs.461253 NM_001128 HPRD:04637 AP1G1 ADTG|CLAPG1 adaptor-related protein complex 1, gamma 1 subunit protein-coding 561_WT_peak_5935 chr5 137090208 137091050 + 223 NA promoter-TSS (NM_006805) promoter-TSS (NM_006805) -590 NM_006805 10949 Hs.96996 NM_006805 HPRD:17112 HNRNPA0 HNRPA0 heterogeneous nuclear ribonucleoprotein A0 protein-coding 561_WT_peak_786 chr1 230778129 230778554 + 223 NA 5' UTR (NM_001145036, exon 1 of 18) 5' UTR (NM_001145036, exon 1 of 18) 139 NM_001145036 22796 Hs.211800 NM_007357 HPRD:07372 COG2 LDLC component of oligomeric golgi complex 2 protein-coding 561_WT_peak_763 chr1 228270333 228270780 + 222 NA promoter-TSS (NM_001024228) promoter-TSS (NM_001024228) 195 NM_001024226 375 Hs.286221 NM_001658 HPRD:00054 ARF1 - ADP-ribosylation factor 1 protein-coding 561_WT_peak_1274 chr11 47447581 47447825 + 222 NA intron (NM_002804, intron 1 of 11) intron (NM_002804, intron 1 of 11) 321 NM_002804 5702 Hs.250758 NM_002804 HPRD:01733 PSMC3 TBP1 proteasome (prosome, macropain) 26S subunit, ATPase, 3 protein-coding 561_WT_peak_3010 chr17 7155064 7155373 + 222 NA promoter-TSS (NM_001143775) promoter-TSS (NM_001143775) 41 NM_015343 23399 Hs.513913 NM_015343 HPRD:16845 CTDNEP1 DULLARD|HSA011916|NET56 CTD nuclear envelope phosphatase 1 protein-coding 561_WT_peak_2845 chr16 53491395 53491870 + 221 NA intron (NM_005611, intron 8 of 21) intron (NM_005611, intron 8 of 21) 23281 NM_005611 5934 Hs.513609 NM_005611 HPRD:01576 RBL2 P130|Rb2 retinoblastoma-like 2 protein-coding 561_WT_peak_3290 chr17 60562317 60562563 + 221 NA intron (NM_006852, intron 2 of 21) intron (NM_006852, intron 2 of 21) 3966 NM_001284363 11011 Hs.445078 NM_006852 TLK2 HsHPK|PKU-ALPHA tousled-like kinase 2 protein-coding 561_WT_peak_6232 chr6 27860051 27861148 + 221 NA promoter-TSS (NM_003527) promoter-TSS (NM_003527) 364 NM_003514 8336 Hs.134999 NM_003514 HPRD:09106 HIST1H2AM H2A.1|H2A/n|H2AFN|dJ193B12.1 histone cluster 1, H2am protein-coding 561_WT_peak_7207 chr9 6412509 6413298 + 220 NA promoter-TSS (NM_152896) promoter-TSS (NM_152896) -248 NR_046386 115426 Hs.493401 NM_152896 HPRD:18257 UHRF2 NIRF|RNF107|URF2 ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase protein-coding 561_WT_peak_2307 chr14 77923953 77924322 + 220 NA promoter-TSS (NM_022067) promoter-TSS (NM_022067) -154 NM_001193314 63894 Hs.16157 NM_022067 HPRD:10710 VIPAS39 C14orf133|SPE-39|SPE39|VIPAR|VPS16B|hSPE-39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein-coding 561_WT_peak_7320 chr9 86535743 86536146 + 220 NA intron (NM_017576, intron 1 of 17) CpG 436 NM_001271927 55582 Hs.697514 NM_017576 HPRD:11179 KIF27 - kinesin family member 27 protein-coding 561_WT_peak_4052 chr2 44223290 44223636 + 220 NA promoter-TSS (NM_133259) promoter-TSS (NM_133259) -319 NM_133259 10128 Hs.368084 NM_133259 HPRD:06343 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine-rich pentatricopeptide repeat containing protein-coding 561_WT_peak_1819 chr12 98897850 98898183 + 220 NA promoter-TSS (NR_038383) promoter-TSS (NR_038383) -383 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LOC643770 - uncharacterized LOC643770 ncRNA 561_WT_peak_6030 chr5 175816224 175816622 + 220 NA promoter-TSS (NM_001256539) promoter-TSS (NM_001256539) 639 NM_138820 192286 Hs.534575 NM_138820 HPRD:14483 HIGD2A RCF1b HIG1 hypoxia inducible domain family, member 2A protein-coding 561_WT_peak_5421 chr4 15657154 15657498 + 220 NA promoter-TSS (NM_001193534) promoter-TSS (NM_001193534) -291 NM_001193535 26234 Hs.643433 NM_012161 HPRD:05739 FBXL5 FBL4|FBL5|FLR1 F-box and leucine-rich repeat protein 5 protein-coding 561_WT_peak_3927 chr19 58513714 58514691 + 220 NA promoter-TSS (NR_036508) promoter-TSS (NR_036508) -60 NR_036508 100128398 Hs.655081 NR_036508 ENSG00000176593 LOC100128398 - uncharacterized LOC100128398 ncRNA 561_WT_peak_877 chr10 8374293 8374818 + 220 NA Intergenic Intergenic -64287 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 561_WT_peak_2396 chr14 106765174 106765526 + 220 NA Intergenic Intergenic 21081 NR_033375 338004 Hs.569411 NR_033375 ENSG00000229084 LINC00226 C14orf97|NCRNA00226 long intergenic non-protein coding RNA 226 ncRNA 561_WT_peak_7182 chr8 144699644 144700122 + 220 NA promoter-TSS (NM_003313) promoter-TSS (NM_003313) -151 NM_003313 7264 Hs.404119 NM_003313 HPRD:00654 TSTA3 FX|P35B|SDR4E1 tissue specific transplantation antigen P35B protein-coding 561_WT_peak_4270 chr2 114361585 114362050 + 219 NA promoter-TSS (NR_024004) promoter-TSS (NR_024004) -523 NR_024004 84771 Hs.712940 NR_024004 ENSG00000236397 DDX11L2 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2 pseudo 561_WT_peak_1918 chr12 125406128 125406499 + 219 NA Intergenic tRNA-Ala-GCG|tRNA|tRNA 6220 NR_049820 100847004 NR_049820 miRBase:MI0018167 MIR5188 - microRNA 5188 ncRNA 561_WT_peak_6750 chr7 92158010 92158383 + 219 NA promoter-TSS (NM_001282678) promoter-TSS (NM_001282678) 109 NM_032120 84060 Hs.21590 NM_032120 HPRD:13173 RBM48 C7orf64|DKFZP564O0523|HSPC304 RNA binding motif protein 48 protein-coding 561_WT_peak_6243 chr6 28863649 28864260 + 219 NA promoter-TSS (NR_104117) promoter-TSS (NR_104117) -353 NR_104117 414760 Hs.211005 NR_104117 HCG14 dJ111M5.4 HLA complex group 14 (non-protein coding) ncRNA 561_WT_peak_2117 chr14 21152005 21152476 + 219 NA promoter-TSS (NM_001145) promoter-TSS (NM_001145) -96 NM_001145 283 Hs.283749 NM_001145 HPRD:00105 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin, ribonuclease, RNase A family, 5 protein-coding 561_WT_peak_6452 chr6 117923786 117924033 + 219 NA promoter-TSS (NM_020399) promoter-TSS (NM_020399) -204 NM_020399 57120 Hs.191539 NM_020399 HPRD:06024 GOPC CAL|FIG|GOPC1|PIST|dJ94G16.2 golgi-associated PDZ and coiled-coil motif containing protein-coding 561_WT_peak_3586 chr19 4724510 4724862 + 219 NA promoter-TSS (NM_139159) promoter-TSS (NM_139159) -831 NM_139159 91039 Hs.515081 NM_139159 HPRD:07001 DPP9 DP9|DPLP9|DPRP-2|DPRP2 dipeptidyl-peptidase 9 protein-coding 561_WT_peak_6240 chr6 28806139 28806447 + 219 NA Intergenic Intergenic 25161 NR_033379 401242 Hs.448285 NR_033379 ENSG00000225595 LOC401242 - uncharacterized LOC401242 ncRNA 561_WT_peak_7625 chrX 153236797 153237817 + 219 NA promoter-TSS (NM_005334) promoter-TSS (NM_005334) -488 NM_005334 3054 Hs.83634 NM_005334 HPRD:02061 HCFC1 CFF|HCF-1|HCF1|HFC1|MRX3|PPP1R89|VCAF host cell factor C1 protein-coding 561_WT_peak_4410 chr2 196428916 196429194 + 219 NA Intergenic Intergenic -92477 NM_001127257 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 561_WT_peak_2604 chr15 91191447 91191912 + 219 NA intron (NR_120372, intron 2 of 3) MER41B|LTR|ERV1 -11786 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LOC101929765 - uncharacterized LOC101929765 ncRNA 561_WT_peak_832 chr1 245133086 245133924 + 218 NA promoter-TSS (NR_026587) promoter-TSS (NR_026587) -126 NM_001290327 84288 Hs.134857 NM_032328 HPRD:14423 EFCAB2 CFAP200|DRC8 EF-hand calcium binding domain 2 protein-coding 561_WT_peak_2074 chr13 77600998 77601334 + 218 NA 5' UTR (NM_012158, exon 1 of 5) 5' UTR (NM_012158, exon 1 of 5) 165 NM_012158 26224 Hs.508284 NM_012158 HPRD:05737 FBXL3 FBL3|FBL3A|FBXL3A F-box and leucine-rich repeat protein 3 protein-coding 561_WT_peak_689 chr1 204380570 204381044 + 218 NA 5' UTR (NM_032833, exon 1 of 2) 5' UTR (NM_032833, exon 1 of 2) 138 NM_032833 84919 Hs.304376 NM_032833 HPRD:17892 PPP1R15B CREP protein phosphatase 1, regulatory subunit 15B protein-coding 561_WT_peak_2548 chr15 73075830 73076400 + 218 NA promoter-TSS (NM_031284) promoter-TSS (NM_031284) 11 NR_023318 83440 Hs.654636 NM_031284 HPRD:12429 ADPGK 2610017G09Rik|ADP-GK ADP-dependent glucokinase protein-coding 561_WT_peak_557 chr1 156182818 156183043 + 218 NA TTS (NR_104408) TTS (NR_104408) 151 NM_001199663 100527963 Hs.530479 NM_001199661 ENSG00000260238 PMF1-BGLAP PMF1 PMF1-BGLAP readthrough protein-coding 561_WT_peak_4079 chr2 55920772 55921177 + 218 NA promoter-TSS (NM_033109) promoter-TSS (NM_033109) 71 NM_033109 87178 Hs.388733 NM_033109 HPRD:18493 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 561_WT_peak_6230 chr6 27840811 27841727 + 218 NA promoter-TSS (NM_003546) promoter-TSS (NM_003546) 20 NM_003546 8368 Hs.533295 NM_003546 HPRD:11922 HIST1H4L H4.k|H4/k|H4FK histone cluster 1, H4l protein-coding 561_WT_peak_4430 chr2 201577862 201578239 + 218 NA non-coding (NR_037886, exon 3 of 3) non-coding (NR_037886, exon 3 of 3) 17604 NR_001557 344454 Hs.148269 NR_001557 AOX2P AOH2|AOX2 aldehyde oxidase 2 pseudogene pseudo 561_WT_peak_2535 chr15 69110165 69110801 + 217 NA intron (NM_006305, intron 1 of 6) CpG 2778 NM_006305 8125 Hs.458747 NM_006305 HPRD:09014 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A protein-coding 561_WT_peak_4291 chr2 128568262 128568788 + 217 NA intron (NM_001006623, intron 1 of 7) CpG 236 NM_001006622 55339 Hs.554831 NM_018383 HPRD:11680 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 561_WT_peak_6454-2 chr6 119214612 119215019 + 217 NA promoter-TSS (NM_014034) promoter-TSS (NM_014034) -426 NM_014034 25842 Hs.292316 NM_014034 HPRD:16459 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 561_WT_peak_1209 chr11 10829935 10830538 + 217 NA promoter-TSS (NR_120540) promoter-TSS (NR_120540) 346 NM_001418 1982 Hs.183684 NM_001418 HPRD:09084 EIF4G2 AAG1|DAP5|NAT1|P97 eukaryotic translation initiation factor 4 gamma, 2 protein-coding 561_WT_peak_191 chr1 39662543 39662863 + 217 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 112864 NM_012090 23499 Hs.472475 NM_012090 HPRD:09750 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 561_WT_peak_205 chr1 43232890 43233357 + 217 NA promoter-TSS (NM_022356) promoter-TSS (NM_022356) 207 NR_040733 79078 Hs.148845 NM_024097 HPRD:14714 C1orf50 - chromosome 1 open reading frame 50 protein-coding 561_WT_peak_6454 chr6 119214365 119214560 + 217 NA promoter-TSS (NM_014034) promoter-TSS (NM_014034) -779 NM_014034 25842 Hs.292316 NM_014034 HPRD:16459 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 561_WT_peak_6181 chr6 26553578 26553875 + 217 NA Intergenic Intergenic 15154 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 561_WT_peak_4415 chr2 197040779 197041181 + 216 NA Intergenic Intergenic -4644 NM_004226 9262 Hs.88297 NM_004226 HPRD:05289 STK17B DRAK2 serine/threonine kinase 17b protein-coding 561_WT_peak_665 chr1 193090892 193091595 + 216 NA 5' UTR (NM_024529, exon 1 of 17) 5' UTR (NM_024529, exon 1 of 17) 155 NM_024529 79577 Hs.378996 NM_024529 HPRD:09581 CDC73 C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX cell division cycle 73 protein-coding 561_WT_peak_3922 chr19 58238750 58239167 + 216 NA promoter-TSS (NM_024833) promoter-TSS (NM_024833) 37 NM_024833 79891 Hs.180402 NM_024833 HPRD:08031 ZNF671 - zinc finger protein 671 protein-coding 561_WT_peak_6719 chr7 74508546 74508901 + 215 NA intron (NM_001003795, intron 1 of 15) CpG 376 NM_173537 84163 Hs.647017 NM_173537 HPRD:16402 GTF2IRD2 FP630|GTF2IRD2 alpha|GTF2IRD2A GTF2I repeat domain containing 2 protein-coding 561_WT_peak_4884 chr22 31318164 31318486 + 215 NA promoter-TSS (NR_026920) promoter-TSS (NR_026920) 30 NR_026920 150291 Hs.592202 NM_153044 HPRD:08191 MORC2-AS1 C22orf27|NCRNA00325 MORC2 antisense RNA 1 ncRNA 561_WT_peak_91 chr1 19933391 19933600 + 215 NA promoter-TSS (NR_077246) promoter-TSS (NR_077246) -806 NR_077246 644068 Hs.660760 NR_077246 RPS14P3 RPS14_1_16 ribosomal protein S14 pseudogene 3 pseudo 561_WT_peak_3478 chr18 29671655 29672322 + 215 NA promoter-TSS (NM_001191324) promoter-TSS (NM_001191324) 170 NM_016271 51444 Hs.302408 NM_016271 HPRD:11508 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138, E3 ubiquitin protein ligase protein-coding 561_WT_peak_4690 chr20 52226105 52226518 + 215 NA Intergenic Intergenic -26675 NM_006526 7764 Hs.155040 NM_006526 HPRD:04272 ZNF217 ZABC1 zinc finger protein 217 protein-coding 561_WT_peak_1569 chr12 7079892 7080294 + 215 NA promoter-TSS (NM_001144831) promoter-TSS (NM_001144831) 149 NM_006331 10436 Hs.744040 NM_006331 HPRD:12803 EMG1 C2F|Grcc2f|NEP1 EMG1 N1-specific pseudouridine methyltransferase protein-coding 561_WT_peak_4590 chr20 26188715 26189205 + 215 NA promoter-TSS (NR_030386) promoter-TSS (NR_030386) -46 NR_030386 724033 NR_030386 miRBase:MI0003672 MIR663A MIR663|MIRN663|hsa-mir-663|hsa-mir-663a microRNA 663a ncRNA 561_WT_peak_2297 chr14 75716230 75716579 + 215 NA Intergenic Intergenic -29077 NM_005252 2353 Hs.25647 NM_005252 HPRD:01275 FOS AP-1|C-FOS|p55 FBJ murine osteosarcoma viral oncogene homolog protein-coding 561_WT_peak_2281 chr14 73957670 73958024 + 215 NA exon (NM_024644, exon 1 of 1) exon (NM_024644, exon 1 of 1) 208 NM_024644 79697 Hs.509916 NM_024644 C14orf169 MAPJD|NO66|ROX|hsNO66 chromosome 14 open reading frame 169 protein-coding 561_WT_peak_4096 chr2 64083281 64083630 + 215 NA exon (NM_006759, exon 2 of 10) exon (NM_006759, exon 2 of 10) 14441 NM_006759 7360 Hs.516217 NM_006759 HPRD:08934 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 561_WT_peak_6356 chr6 57038047 57038295 + 214 NA intron (NM_004282, intron 1 of 2) intron (NM_004282, intron 1 of 2) 1067 NM_004282 9532 Hs.745046 NM_004282 BAG2 BAG-2|dJ417I1.2 BCL2-associated athanogene 2 protein-coding 561_WT_peak_6221 chr6 27798893 27799536 + 214 NA promoter-TSS (NM_003541) promoter-TSS (NM_003541) 91 NM_003541 8362 Hs.528055 NM_003541 HPRD:11916 HIST1H4K H4/d|H4F2iii|H4FD|dJ160A22.1 histone cluster 1, H4k protein-coding 561_WT_peak_4160 chr2 75937622 75938126 + 214 NA promoter-TSS (NM_001201334) promoter-TSS (NM_001201334) -142 NM_001201334 6936 Hs.303808 NM_003203 HPRD:01791 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 561_WT_peak_1732 chr12 57082351 57082773 + 213 NA promoter-TSS (NM_001282602) promoter-TSS (NM_001282602) -370 NM_001282605 10728 Hs.50425 NM_006601 HPRD:06138 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 (cytosolic) protein-coding 561_WT_peak_4083-2 chr2 61244621 61244770 + 213 NA promoter-TSS (NM_002618) promoter-TSS (NM_002618) -117 NM_002618 5194 Hs.161377 NM_002618 HPRD:03475 PEX13 NALD|PBD11A|PBD11B|ZWS peroxisomal biogenesis factor 13 protein-coding 561_WT_peak_3061 chr17 18218527 18219061 + 213 NA promoter-TSS (NM_004618) promoter-TSS (NM_004618) 200 NM_144775 140775 Hs.592944 NM_144775 SMCR8 - Smith-Magenis syndrome chromosome region, candidate 8 protein-coding 561_WT_peak_4083 chr2 61244292 61244559 + 213 NA promoter-TSS (NM_002618) promoter-TSS (NM_002618) -387 NM_002618 5194 Hs.161377 NM_002618 HPRD:03475 PEX13 NALD|PBD11A|PBD11B|ZWS peroxisomal biogenesis factor 13 protein-coding 561_WT_peak_2082 chr13 95201302 95202123 + 213 NA Intergenic CpG 46799 NM_014305 23483 Hs.12393 NM_014305 HPRD:15494 TGDS SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 561_WT_peak_1828 chr12 102270910 102271483 + 213 NA promoter-TSS (NM_018370) promoter-TSS (NM_018370) 91 NM_018370 55332 Hs.525634 NM_018370 HPRD:07743 DRAM1 DRAM DNA-damage regulated autophagy modulator 1 protein-coding 561_WT_peak_4311 chr2 135676405 135676807 + 213 NA promoter-TSS (NR_036549) promoter-TSS (NR_036549) 214 NM_001241 905 Hs.744115 NM_001241 HPRD:04839 CCNT2 CYCT2 cyclin T2 protein-coding 561_WT_peak_2722 chr16 21518328 21518822 + 212 NA Intergenic Intergenic -4973 NR_027155 100271836 Hs.552700 NR_027155 ENSG00000180747 SMG1P3 - SMG1 pseudogene 3 pseudo 561_WT_peak_220 chr1 45965745 45966174 + 212 NA promoter-TSS (NR_033298) promoter-TSS (NR_033298) 103 NM_015506 25974 Hs.13024 NM_015506 HPRD:18585 MMACHC cblC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria protein-coding 561_WT_peak_6520 chr6 152492146 152492959 + 212 NA intron (NM_182961, intron 130 of 145) intron (NM_182961, intron 130 of 145) -209113 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 561_WT_peak_1043 chr10 74056834 74057775 + 212 NA Intergenic MIRb|SINE|MIR 23627 NM_019058 54541 Hs.744875 NM_019058 HPRD:09662 DDIT4 Dig2|REDD-1|REDD1 DNA-damage-inducible transcript 4 protein-coding 561_WT_peak_2346 chr14 94444721 94444989 + 212 NA Intergenic Intergenic -1779 NM_001202429 51676 Hs.510327 NM_016150 HPRD:05768 ASB2 ASB-2 ankyrin repeat and SOCS box containing 2 protein-coding 561_WT_peak_4328 chr2 150443981 150444347 + 212 NA non-coding (NR_110240, exon 1 of 3) non-coding (NR_110240, exon 1 of 3) 166 NM_015702 27249 Hs.5324 NM_015702 HPRD:10781 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria protein-coding 561_WT_peak_3882 chr19 52551976 52552364 + 212 NA promoter-TSS (NM_014650) promoter-TSS (NM_014650) -97 NM_014650 9668 Hs.655934 NM_014650 HPRD:11716 ZNF432 - zinc finger protein 432 protein-coding 561_WT_peak_1854 chr12 110939574 110940423 + 212 NA promoter-TSS (NM_016226) promoter-TSS (NM_016226) -7 NM_001286535 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 homolog B (S. pombe) protein-coding 561_WT_peak_261 chr1 62190546 62190957 + 212 NA exon (NM_032027, exon 1 of 7) exon (NM_032027, exon 1 of 7) 344 NM_032027 83941 Hs.656790 NM_032027 HPRD:16540 TM2D1 BBP TM2 domain containing 1 protein-coding 561_WT_peak_4326 chr2 149402042 149402704 + 211 NA promoter-TSS (NM_015630) promoter-TSS (NM_015630) -187 NM_015630 26122 Hs.23270 NM_015630 HPRD:13274 EPC2 EPC-LIKE enhancer of polycomb homolog 2 (Drosophila) protein-coding 561_WT_peak_7412 chr9 123605146 123605603 + 211 NA promoter-TSS (NM_005047) promoter-TSS (NM_005047) 54 NR_024408 253039 Hs.594170 NR_024408 ENSG00000226752 PSMD5-AS1 - PSMD5 antisense RNA 1 (head to head) ncRNA 561_WT_peak_1786 chr12 89556574 89556863 + 211 NA Intergenic Intergenic -143249 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 561_WT_peak_2537 chr15 70051374 70051755 + 211 NA Intergenic Intergenic -76009 NR_026764 414926 Hs.569502 NR_026764 ENSG00000259703 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 561_WT_peak_7138 chr8 125486731 125487763 + 211 NA promoter-TSS (NR_108048) promoter-TSS (NR_108048) 239 NM_007218 11236 Hs.744151 NM_007218 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 561_WT_peak_1528 chr11 129872182 129872714 + 211 NA promoter-TSS (NR_024233) promoter-TSS (NR_024233) -71 NR_024233 440072 Hs.630600 NM_001007543 LINC00167 C11orf37|NCRNA00167 long intergenic non-protein coding RNA 167 ncRNA 561_WT_peak_3604 chr19 8386041 8386534 + 211 NA promoter-TSS (NM_001031) promoter-TSS (NM_001031) -7 NM_005001 4701 Hs.333427 NM_005001 HPRD:11885 NDUFA7 B14.5a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa protein-coding 561_WT_peak_2577 chr15 83208774 83209491 + 210 NA promoter-TSS (NR_111943).2 promoter-TSS (NR_111943).2 76 NR_111943 6218 Hs.433427 NM_001021 HPRD:01600 RPS17 DBA4|RPS17L|RPS17L1|RPS17L2|S17 ribosomal protein S17 protein-coding 561_WT_peak_1628 chr12 25204720 25205584 + 210 NA promoter-TSS (NM_006152) promoter-TSS (NM_006152) -29 NM_001204127 4033 Hs.124922 NM_006152 HPRD:03593 LRMP JAW1 lymphoid-restricted membrane protein protein-coding 561_WT_peak_3253 chr17 53802823 53803052 + 210 NA intron (NM_001099640, intron 2 of 3) intron (NM_001099640, intron 2 of 3) -2712 NM_018286 55273 Hs.173233 NM_018286 HPRD:07719 TMEM100 - transmembrane protein 100 protein-coding 561_WT_peak_3092 chr17 27046820 27047503 + 210 NA promoter-TSS (NR_000013) promoter-TSS (NR_000013) 161 NM_000984 6147 Hs.419463 NM_000984 RPL23A L23A|MDA20 ribosomal protein L23a protein-coding 561_WT_peak_394 chr1 114471838 114472211 + 209 NA promoter-TSS (NM_198268) promoter-TSS (NM_198268) 28 NM_152696 204851 Hs.532363 NM_152696 HPRD:06418 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 561_WT_peak_6694 chr7 66460166 66460545 + 209 NA exon (NM_016038, exon 1 of 5) exon (NM_016038, exon 1 of 5) 233 NM_016038 51119 Hs.110445 NM_016038 HPRD:07393 SBDS SDS|SWDS Shwachman-Bodian-Diamond syndrome protein-coding 561_WT_peak_1544 chr12 861080 861926 + 209 NA promoter-TSS (NM_014823) promoter-TSS (NM_014823) -586 NM_001184985 65125 Hs.744906 NM_014823 HPRD:05570 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 561_WT_peak_751 chr1 225965384 225965944 + 209 NA exon (NM_001130440, exon 1 of 4) exon (NM_001130440, exon 1 of 4) 149 NM_001130440 6726 Hs.511425 NM_003133 HPRD:02830 SRP9 ALURBP signal recognition particle 9kDa protein-coding 561_WT_peak_3322 chr17 66243479 66243813 + 209 NA promoter-TSS (NM_001033571) promoter-TSS (NM_001033571) -499 NM_001033570 51321 Hs.293560 NM_016627 HPRD:14237 AMZ2 - archaelysin family metallopeptidase 2 protein-coding 561_WT_peak_6872 chr7 140624178 140624558 + 209 NA exon (NM_004333, exon 1 of 18) exon (NM_004333, exon 1 of 18) 196 NM_004333 673 Hs.550061 NM_004333 HPRD:01264 BRAF B-RAF1|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 561_WT_peak_59 chr1 11333286 11333607 + 209 NA 5' UTR (NM_013319, exon 1 of 2) 5' UTR (NM_013319, exon 1 of 2) 191 NM_013319 29914 Hs.522933 NM_013319 HPRD:15487 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 561_WT_peak_4060 chr2 47403183 47403624 + 209 NA intron (NM_001743, intron 1 of 5) CpG 337 NM_001743 805 Hs.468442 NM_001743 HPRD:00242 CALM2 CAMII|PHKD|PHKD2 calmodulin 2 (phosphorylase kinase, delta) protein-coding 561_WT_peak_7339 chr9 93893865 93894217 + 208 NA Intergenic Intergenic -56627 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 561_WT_peak_592 chr1 161500072 161500340 + 208 NA Intergenic tRNA-Leu-CTG|tRNA|tRNA 6170 NM_002155 3310 Hs.654614 NM_002155 HPRD:00775 HSPA6 - heat shock 70kDa protein 6 (HSP70B') protein-coding 561_WT_peak_173 chr1 35965277 35965704 + 208 NA intron (NM_024874, intron 3 of 20) intron (NM_024874, intron 3 of 20) 57547 NM_024874 79932 Hs.456507 NM_024874 HPRD:11164 KIAA0319L - KIAA0319-like protein-coding 561_WT_peak_3131 chr17 34136062 34136766 + 208 NA promoter-TSS (NM_139215) promoter-TSS (NM_139215) -45 NM_003487 8148 Hs.402752 NM_003487 HPRD:09031 TAF15 Npl3|RBP56|TAF2N|TAFII68 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa protein-coding 561_WT_peak_6246 chr6 28909215 28909537 + 208 NA Intergenic Intergenic -2185 NR_103538 729583 Hs.453549 NR_103538 C6orf100 dJ25J6.5 chromosome 6 open reading frame 100 ncRNA 561_WT_peak_2532 chr15 68132126 68132632 + 208 NA promoter-TSS (NR_125730).5 promoter-TSS (NR_125730).5 4 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 561_WT_peak_4566 chr20 13765479 13765752 + 207 NA promoter-TSS (NM_001276380) promoter-TSS (NM_001276380) -36 NM_001276380 51575 Hs.369284 NM_016649 HPRD:10732 ESF1 ABTAP|C20orf6|bA526K24.1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) protein-coding 561_WT_peak_6409 chr6 99872825 99873295 + 207 NA intron (NM_032870, intron 1 of 11) CpG 147 NM_015491 25957 Hs.520287 NM_015491 HPRD:10787 PNISR C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2 PNN-interacting serine/arginine-rich protein protein-coding 561_WT_peak_3203 chr17 43224527 43225434 + 207 NA 5' UTR (NM_006460, exon 1 of 1) 5' UTR (NM_006460, exon 1 of 1) 296 NM_006460 10614 Hs.586945 NM_006460 HPRD:09544 HEXIM1 CLP1|EDG1|HIS1|MAQ1 hexamethylene bis-acetamide inducible 1 protein-coding 561_WT_peak_2865 chr16 66637481 66637798 + 207 NA promoter-TSS (NM_144601) promoter-TSS (NM_144601) -296 NR_037613 123920 Hs.298198 NM_144601 HPRD:16259 CMTM3 BNAS2|CKLFSF3 CKLF-like MARVEL transmembrane domain containing 3 protein-coding 561_WT_peak_3099 chr17 27621097 27621621 + 207 NA promoter-TSS (NM_020772) promoter-TSS (NM_020772) -193 NM_020772 57532 Hs.462598 NM_020772 HPRD:11764 NUFIP2 182-FIP|82-FIP|FIP-82 nuclear fragile X mental retardation protein interacting protein 2 protein-coding 561_WT_peak_2063 chr13 52733663 52734041 + 207 NA promoter-TSS (NM_152720) promoter-TSS (NM_152720) 144 NM_002498 4752 Hs.409989 NM_002498 HPRD:04954 NEK3 HSPK36 NIMA-related kinase 3 protein-coding 561_WT_peak_7387 chr9 111882030 111882528 + 207 NA promoter-TSS (NM_032012) promoter-TSS (NM_032012) -54 NM_032012 23731 Hs.308074 NM_032012 HPRD:09866 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 561_WT_peak_296 chr1 78443999 78445352 + 206 NA exon (NM_003902, exon 1 of 20) exon (NM_003902, exon 1 of 20) 102 NM_003902 8880 Hs.567380 NM_003902 HPRD:10349 FUBP1 FBP|FUBP far upstream element (FUSE) binding protein 1 protein-coding 561_WT_peak_276 chr1 67519409 67520063 + 206 NA 5' UTR (NM_015139, exon 1 of 12) 5' UTR (NM_015139, exon 1 of 12) 344 NM_015139 23169 Hs.213642 NM_015139 HPRD:15372 SLC35D1 UGTREL7 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1 protein-coding 561_WT_peak_3725 chr19 35224551 35225411 + 206 NA promoter-TSS (NM_001145665) promoter-TSS (NM_001145665) -499 NM_001029997 339318 Hs.720472 NM_001029997 HPRD:18783 ZNF181 HHZ181 zinc finger protein 181 protein-coding 561_WT_peak_6509 chr6 149469495 149469899 + 206 NA Intergenic Intergenic -70062 NM_001292035 23118 Hs.269775 NM_015093 HPRD:05483 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding 561_WT_peak_1205 chr11 9482499 9483155 + 206 NA promoter-TSS (NR_036539) promoter-TSS (NR_036539) 315 NM_001282656 7702 Hs.523471 NM_003442 HPRD:04578 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 561_WT_peak_3398 chr17 80415851 80416462 + 205 NA promoter-TSS (NM_031968) promoter-TSS (NM_031968) 96 NM_001038618 26502 Hs.256526 NM_012336 HPRD:05637 NARF IOP2 nuclear prelamin A recognition factor protein-coding 561_WT_peak_1308 chr11 61129413 61129854 + 205 NA non-coding (NR_028473, exon 1 of 6) non-coding (NR_028473, exon 1 of 6) 122 NM_001161454 220002 Hs.22546 NM_153611 HPRD:11316 CYB561A3 CYBASC3|LCYTB cytochrome b561 family, member A3 protein-coding 561_WT_peak_2398 chr14 107119894 107120403 + 205 NA Intergenic Intergenic 181703 NR_027457 338005 Hs.322826 NR_027457 ENSG00000187156 LINC00221 C14orf98|NCRNA00221 long intergenic non-protein coding RNA 221 ncRNA 561_WT_peak_3867 chr19 50529063 50529481 + 205 NA promoter-TSS (NM_016440) promoter-TSS (NM_016440) 60 NM_001006656 25888 Hs.440553 NM_015428 HPRD:11721 ZNF473 HZFP100|ZN473 zinc finger protein 473 protein-coding 561_WT_peak_171 chr1 35658505 35658796 + 205 NA promoter-TSS (NM_005066) promoter-TSS (NM_005066) 93 NM_005066 6421 Hs.355934 NM_005066 HPRD:07284 SFPQ POMP100|PPP1R140|PSF splicing factor proline/glutamine-rich protein-coding 561_WT_peak_3899 chr19 56110565 56110996 + 205 NA promoter-TSS (NM_153219) promoter-TSS (NM_153219) 113 NM_032836 84922 Hs.515617 NM_032836 HPRD:07870 FIZ1 ZNF798 FLT3-interacting zinc finger 1 protein-coding 561_WT_peak_1881 chr12 120730412 120731153 + 205 NA Intergenic Intergenic -9342 NM_012240 23409 Hs.50861 NM_012240 HPRD:06837 SIRT4 SIR2L4 sirtuin 4 protein-coding 561_WT_peak_4918 chr22 39715325 39715611 + 205 NA promoter-TSS (NR_002439) promoter-TSS (NR_002439) 202 NM_001033853 6122 Hs.119598 NM_000967 HPRD:16042 RPL3 ASC-1|L3|TARBP-B ribosomal protein L3 protein-coding 561_WT_peak_5063 chr3 39448246 39448604 + 205 NA promoter-TSS (NM_001012321) promoter-TSS (NM_001012321) 221 NM_002295 3921 Hs.449909 NM_002295 HPRD:01038 RPSA 37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40 ribosomal protein SA protein-coding 561_WT_peak_5665 chr5 1792928 1793216 + 205 NA Intergenic MER58A|DNA|hAT-Charlie 6884 NM_032479 64979 Hs.719465 NM_032479 HPRD:14756 MRPL36 BRIP1|L36mt|MRP-L36|PRPL36|RPMJ mitochondrial ribosomal protein L36 protein-coding 561_WT_peak_5361 chr3 189042464 189042943 + 204 NA Intergenic Intergenic -84320 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 561_WT_peak_69 chr1 15575707 15575938 + 204 NA intron (NM_052929, intron 1 of 30) intron (NM_052929, intron 1 of 30) 2054 NM_052929 114827 Hs.659997 NM_052929 ENSG00000142621 FHAD1 - forkhead-associated (FHA) phosphopeptide binding domain 1 protein-coding 561_WT_peak_7491 chrX 1324748 1325067 + 204 NA intron (NM_001012288, intron 2 of 4) intron (NM_001012288, intron 2 of 4) 6709 NM_022148 64109 Hs.287729 NM_022148 HPRD:02288 CRLF2 CRL2|CRLF2Y|TSLPR cytokine receptor-like factor 2 protein-coding 561_WT_peak_4586 chr20 24975567 24975820 + 204 NA Intergenic MER20|DNA|hAT-Charlie -2268 NM_020531 57136 Hs.472330 NM_020531 HPRD:09840 APMAP BSCv|C20orf3 adipocyte plasma membrane associated protein protein-coding 561_WT_peak_4332 chr2 153573595 153573907 + 204 NA promoter-TSS (NR_024526) promoter-TSS (NR_024526) 224 NM_017892 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) protein-coding 561_WT_peak_3981 chr2 24149487 24150188 + 204 NA non-coding (NR_125717, exon 1 of 29) non-coding (NR_125717, exon 1 of 29) 147 NR_125717 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family, AAA domain containing 2B protein-coding 561_WT_peak_1476 chr11 108337906 108338169 + 204 NA intron (NM_152587, intron 1 of 8) intron (NM_152587, intron 1 of 8) 221 NM_152587 160140 Hs.653180 NM_152587 HPRD:14579 C11orf65 - chromosome 11 open reading frame 65 protein-coding 561_WT_peak_1211 chr11 11863185 11864142 + 204 NA 5' UTR (NM_017944, exon 1 of 27) 5' UTR (NM_017944, exon 1 of 27) 693 NM_017944 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 561_WT_peak_6215-2 chr6 27777619 27777719 + 203 NA promoter-TSS (NM_003536) promoter-TSS (NM_003536) -173 NM_003536 8357 Hs.591778 NM_003536 HPRD:11912 HIST1H3H H3/k|H3F1K|H3FK histone cluster 1, H3h protein-coding 561_WT_peak_7246 chr9 34379592 34379814 + 203 NA exon (NM_032596, exon 6 of 7) exon (NM_032596, exon 6 of 7) 1895 NM_147168 84688 Hs.50334 NM_032596 HPRD:12949 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 561_WT_peak_5144 chr3 67704471 67705064 + 203 NA promoter-TSS (NR_109992) promoter-TSS (NR_109992) 271 NM_003848 8801 Hs.644919 NM_003848 HPRD:06799 SUCLG2 GBETA succinate-CoA ligase, GDP-forming, beta subunit protein-coding 561_WT_peak_1619 chr12 14538001 14538599 + 203 NA 5' UTR (NM_181352, exon 1 of 15) 5' UTR (NM_181352, exon 1 of 15) 302 NM_181352 55729 Hs.504856 NM_018179 HPRD:09811 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 561_WT_peak_6215 chr6 27775990 27776805 + 203 NA promoter-TSS (NM_003519) promoter-TSS (NM_003519) 420 NM_003509 8329 Hs.534035 NM_003509 HPRD:04153 HIST1H2AI H2A/c|H2AFC histone cluster 1, H2ai protein-coding 561_WT_peak_1972 chr13 28842943 28843202 + 202 NA intron (NM_175854, intron 12 of 18) intron (NM_175854, intron 12 of 18) -129761 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 561_WT_peak_6839 chr7 128864467 128864738 + 202 NA promoter-TSS (NM_015328) promoter-TSS (NM_015328) -253 NM_001130720 23382 Hs.600789 NM_015328 HPRD:11113 AHCYL2 ADOHCYASE3 adenosylhomocysteinase-like 2 protein-coding 561_WT_peak_2182 chr14 39902282 39902581 + 202 NA promoter-TSS (NM_203301) promoter-TSS (NM_203301) -727 NM_203301 254170 Hs.146632 NM_203301 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 561_WT_peak_4726 chr20 62495578 62496365 + 202 NA promoter-TSS (NM_199363) promoter-TSS (NM_199363) -610 NM_001243895 7165 Hs.473296 NM_003288 HPRD:11947 TPD52L2 D54 tumor protein D52-like 2 protein-coding 561_WT_peak_6096 chr6 10404835 10405121 + 202 NA intron (NM_001042425, intron 3 of 6) CpG-21699 -7573 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 561_WT_peak_1013 chr10 64615876 64616136 + 202 NA Intergenic Intergenic -37079 NM_001136178 1959 Hs.1395 NM_000399 HPRD:00551 EGR2 AT591|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 561_WT_peak_7645 chrY 10035828 10036602 + 202 NA Intergenic SSU-rRNA_Hsa|rRNA|rRNA 287808 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 561_WT_peak_5655 chr4 190861518 190861859 + 202 NA promoter-TSS (NM_004477) promoter-TSS (NM_004477) -286 NM_004477 2483 Hs.203772 NM_004477 HPRD:03176 FRG1 FRG1A|FSG1 FSHD region gene 1 protein-coding 561_WT_peak_2267 chr14 69262157 69262981 + 201 NA intron (NM_001244701, intron 1 of 2) CpG 391 NM_001244701 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 561_WT_peak_3962 chr2 10588825 10589276 + 201 NA promoter-TSS (NM_002539) promoter-TSS (NM_002539) -370 NM_001287188 4953 Hs.467701 NM_002539 HPRD:01324 ODC1 ODC ornithine decarboxylase 1 protein-coding 561_WT_peak_5363 chr3 193310800 193311263 + 201 NA promoter-TSS (NM_130835) promoter-TSS (NM_130835) 98 NM_015560 4976 Hs.594504 NM_015560 HPRD:05596 OPA1 MGM1|NPG|NTG|largeG optic atrophy 1 (autosomal dominant) protein-coding 561_WT_peak_3496 chr18 45457616 45458092 + 201 NA promoter-TSS (NM_001135937) promoter-TSS (NM_001135937) -337 NM_001003652 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 561_WT_peak_6756 chr7 94139227 94139578 + 201 NA exon (NM_022900, exon 1 of 18) exon (NM_022900, exon 1 of 18) 232 NM_022900 64921 Hs.260041 NM_022900 HPRD:13004 CASD1 C7orf12|NBLA04196 CAS1 domain containing 1 protein-coding 561_WT_peak_7200 chr9 3526062 3527120 + 201 NA promoter-TSS (NM_001282116) promoter-TSS (NM_001282116) -590 NM_134428 5991 Hs.136829 NM_002919 HPRD:03215 RFX3 - regulatory factor X, 3 (influences HLA class II expression) protein-coding 561_WT_peak_7070 chr8 95565555 95566019 + 200 NA promoter-TSS (NM_015496) promoter-TSS (NM_015496) -41 NM_015496 25962 Hs.202238 NM_015496 HPRD:10889 KIAA1429 fSAP121 KIAA1429 protein-coding 561_WT_peak_5777 chr5 65440064 65440913 + 200 NA promoter-TSS (NM_139168) promoter-TSS (NM_139168) -175 NM_139168 140890 Hs.49367 NM_139168 HPRD:18043 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamine/lysine-rich protein 1 protein-coding 561_WT_peak_6559 chr6 170862039 170862454 + 200 NA exon (NM_002793, exon 1 of 6) exon (NM_002793, exon 1 of 6) 171 NM_002793 5689 Hs.352768 NM_002793 HPRD:03603 PSMB1 HC5|PMSB1|PSC5 proteasome (prosome, macropain) subunit, beta type, 1 protein-coding 561_WT_peak_1330 chr11 63753811 63754251 + 200 NA intron (NR_003089, intron 1 of 5) CpG 706 NM_017670 55611 Hs.473788 NM_017670 OTUB1 OTB1|OTU1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding 561_WT_peak_170 chr1 35657741 35658302 + 200 NA exon (NM_005066, exon 1 of 10) exon (NM_005066, exon 1 of 10) 722 NM_005066 6421 Hs.355934 NM_005066 HPRD:07284 SFPQ POMP100|PPP1R140|PSF splicing factor proline/glutamine-rich protein-coding 561_WT_peak_535 chr1 153931060 153931347 + 200 NA promoter-TSS (NM_181715) promoter-TSS (NM_181715) -71 NM_181715 200186 Hs.406392 NM_181715 HPRD:12347 CRTC2 TORC-2|TORC2 CREB regulated transcription coactivator 2 protein-coding 561_WT_peak_6044 chr5 179105612 179106459 + 200 NA exon (NM_001164444, exon 2 of 2) exon (NM_001164444, exon 2 of 2) 1940 NM_001164444 646019 Hs.535767 NM_001164444 ENSG00000204659 CBY3 - chibby homolog 3 (Drosophila) protein-coding 561_WT_peak_2442 chr15 41913317 41913747 + 200 NA Intergenic CpG -39078 NM_001164273 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MGA, MAX dimerization protein protein-coding 561_WT_peak_607 chr1 167904652 167905318 + 199 NA promoter-TSS (NM_018442) promoter-TSS (NM_018442) 454 NR_026550 25874 Hs.517768 NM_015415 HPRD:08525 MPC2 BRP44 mitochondrial pyruvate carrier 2 protein-coding 561_WT_peak_4264 chr2 113190511 113191306 + 199 NA intron (NM_005054, intron 1 of 22).2 CpG 199 NM_005054 84220 Hs.469630 NM_005054 HPRD:04128 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2-like and GRIP domain containing 5 protein-coding 561_WT_peak_4775 chr21 34863966 34864376 + 199 NA promoter-TSS (NM_017833) promoter-TSS (NM_017833) -141 NM_001040192 54943 Hs.458308 NM_017833 HPRD:10752 DNAJC28 C21orf55|C21orf78 DnaJ (Hsp40) homolog, subfamily C, member 28 protein-coding 561_WT_peak_6896 chr7 150118319 150118480 + 199 NA Intergenic Intergenic -12343 NR_034033 285972 Hs.647110 NR_034033 ENSG00000242258 LINC00996 - long intergenic non-protein coding RNA 996 ncRNA 561_WT_peak_1970 chr13 28024141 28024829 + 199 NA promoter-TSS (NM_001166261) promoter-TSS (NM_001166261) -151 NM_001166261 219402 Hs.534582 NM_152912 HPRD:17609 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 561_WT_peak_5096 chr3 48513953 48514572 + 199 NA intron (NM_001272065, intron 3 of 5) intron (NM_001272065, intron 3 of 5) 480 NM_001272082 51246 Hs.414579 NM_016479 HPRD:06290 SHISA5 SCOTIN shisa family member 5 protein-coding 561_WT_peak_1751 chr12 66563132 66563983 + 199 NA intron (NM_001282606, intron 1 of 7) CpG 295 NM_001282610 51643 Hs.505934 NM_016056 ENSG00000155957 TMBIM4 GAAP|LFG4|S1R|ZPRO transmembrane BAX inhibitor motif containing 4 protein-coding 561_WT_peak_673 chr1 199010741 199011114 + 199 NA Intergenic Intergenic -22834 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 561_WT_peak_2775 chr16 30103167 30103425 + 199 NA promoter-TSS (NM_004608) promoter-TSS (NM_004608) -91 NM_004608 6911 Hs.198301 NM_004608 HPRD:03888 TBX6 SCDO5 T-box 6 protein-coding 561_WT_peak_5576 chr4 109541144 109541993 + 199 NA promoter-TSS (NR_026968) promoter-TSS (NR_026968) 45 NR_026968 285456 Hs.683863 NM_182591 HPRD:08228 RPL34-AS1 - RPL34 antisense RNA 1 (head to head) ncRNA 561_WT_peak_2187 chr14 50052642 50053832 + 199 NA promoter-TSS (NM_001032) promoter-TSS (NM_001032) -103 NM_001030001 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 561_WT_peak_1771 chr12 75905195 75905420 + 198 NA exon (NM_007043, exon 1 of 10) exon (NM_007043, exon 1 of 10) 111 NM_007043 11103 Hs.645517 NM_007043 HPRD:11027 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 561_WT_peak_3117 chr17 31149450 31149842 + 198 NA intron (NM_015194, intron 1 of 21) CpG 54256 NM_015194 4642 Hs.602063 NM_015194 HPRD:07581 MYO1D PPP1R108|myr4 myosin ID protein-coding 561_WT_peak_1597 chr12 11323759 11324412 + 198 NA non-coding (NR_037918, exon 1 of 10) non-coding (NR_037918, exon 1 of 10) 137 NM_001291314 5554 Hs.656965 NM_006250 HPRD:01349 PRH1 PA proline-rich protein HaeIII subfamily 1 protein-coding 561_WT_peak_7125 chr8 122834977 122835293 + 198 NA Intergenic Intergenic -181505 NM_005328 3037 Hs.159226 NM_005328 HAS2 - hyaluronan synthase 2 protein-coding 561_WT_peak_5652 chr4 186317037 186317586 + 198 NA promoter-TSS (NM_181726) promoter-TSS (NM_181726) -529 NM_181726 353322 Hs.508154 NM_181726 HPRD:17461 ANKRD37 Lrp2bp ankyrin repeat domain 37 protein-coding 561_WT_peak_4655 chr20 45986149 45986563 + 198 NA promoter-TSS (NM_001281779) promoter-TSS (NM_001281779) -723 NM_183048 23613 Hs.446240 NM_012408 HPRD:10166 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 561_WT_peak_567 chr1 156786367 156786754 + 198 NA promoter-TSS (NM_001161441) promoter-TSS (NM_001161441) 80 NM_003975 9047 Hs.103527 NM_003975 HPRD:05152 SH2D2A F2771|SCAP|TSAD|VRAP SH2 domain containing 2A protein-coding 561_WT_peak_1126 chr10 103453907 103454566 + 198 NA exon (NM_022039, exon 1 of 9) exon (NM_022039, exon 1 of 9) 507 NM_022039 6468 Hs.500822 NM_022039 HPRD:06994 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 561_WT_peak_6886 chr7 148684158 148684468 + 198 NA Intergenic HY1|scRNA|scRNA 41469 NM_004911 9601 Hs.93659 NM_004911 HPRD:06501 PDIA4 ERP70|ERP72|ERp-72 protein disulfide isomerase family A, member 4 protein-coding 561_WT_peak_6325 chr6 42713453 42713864 + 198 NA exon (NM_003192, exon 1 of 1) exon (NM_003192, exon 1 of 1) 226 NM_003192 6903 Hs.75064 NM_003192 HPRD:04276 TBCC CFC tubulin folding cofactor C protein-coding 561_WT_peak_4575 chr20 18487968 18488530 + 198 NA promoter-TSS (NM_032986) promoter-TSS (NM_032986) 39 NM_001172746 10483 Hs.369373 NM_006363 HPRD:11543 SEC23B CDA-II|CDAII|CDAN2|HEMPAS Sec23 homolog B (S. cerevisiae) protein-coding 561_WT_peak_6320 chr6 42018307 42018576 + 198 NA intron (NM_138572, intron 1 of 8) CpG 190 NM_138572 129685 Hs.520122 NM_138572 HPRD:18167 TAF8 43|II|TAF|TAFII-43|TAFII43|TBN TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa protein-coding 561_WT_peak_2166 chr14 34512945 34513345 + 197 NA Intergenic Intergenic -92861 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 561_WT_peak_662 chr1 192544655 192544997 + 197 NA promoter-TSS (NM_002922) promoter-TSS (NM_002922) -31 NM_002922 5996 Hs.75256 NM_002922 HPRD:15968 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 561_WT_peak_1388 chr11 67120702 67121017 + 197 NA exon (NM_021173, exon 1 of 4) exon (NM_021173, exon 1 of 4) 208 NM_001256870 57804 Hs.523829 NM_021173 POLD4 POLDS|p12 polymerase (DNA-directed), delta 4, accessory subunit protein-coding 561_WT_peak_5058 chr3 37034180 37034657 + 197 NA promoter-TSS (NM_000249) promoter-TSS (NM_000249) 377 NM_014805 9852 Hs.28020 NM_014805 HPRD:07445 EPM2AIP1 - EPM2A (laforin) interacting protein 1 protein-coding 561_WT_peak_6137 chr6 26026756 26027647 + 197 NA TTS (NM_003544) TTS (NM_003544) 279 NM_003544 8366 Hs.143080 NM_003544 HPRD:11920 HIST1H4B H4/I|H4FI histone cluster 1, H4b protein-coding 561_WT_peak_7019 chr8 52811809 52812208 + 197 NA promoter-TSS (NM_052937) promoter-TSS (NM_052937) -262 NM_001286783 115294 Hs.671268 NM_052937 HPRD:08313 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 561_WT_peak_5070 chr3 41240556 41241230 + 197 NA promoter-TSS (NM_001098210) promoter-TSS (NM_001098210) -49 NM_001904 1499 Hs.476018 NM_001904 HPRD:00286 CTNNB1 CTNNB|MRD19|armadillo catenin (cadherin-associated protein), beta 1, 88kDa protein-coding 561_WT_peak_5971 chr5 142984916 142985197 + 197 NA Intergenic Intergenic -74369 NR_049829 100846991 NR_049829 miRBase:MI0018176 MIR5197 - microRNA 5197 ncRNA 561_WT_peak_4187 chr2 88315513 88316452 + 197 NA Intergenic U2|snRNA|snRNA -30673 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2-like and GRIP domain containing 1 protein-coding 561_WT_peak_7244 chr9 33289930 33290978 + 197 NA promoter-TSS (NM_147133) promoter-TSS (NM_147133) 36 NM_147133 4799 Hs.413074 NM_002504 HPRD:11936 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 561_WT_peak_499 chr1 149832150 149832941 + 197 NA exon (NM_001034077, exon 1 of 1).2 exon (NM_001034077, exon 1 of 1).2 180 NM_001034077 554313 Hs.55468 NM_001034077 ENSG00000182217 HIST2H4B H4/o histone cluster 2, H4b protein-coding 561_WT_peak_5609 chr4 146019321 146019843 + 197 NA promoter-TSS (NM_001256706) promoter-TSS (NM_001256706) 111 NM_001256708 10393 Hs.480876 NM_014885 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 561_WT_peak_3489 chr18 42305658 42305963 + 196 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 44947 NM_015559 26040 Hs.435458 NM_015559 HPRD:10224 SETBP1 SEB SET binding protein 1 protein-coding 561_WT_peak_7120 chr8 119102061 119102351 + 196 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 21852 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 561_WT_peak_7430 chr9 129748134 129748449 + 196 NA intron (NM_014636, intron 4 of 18) intron (NM_014636, intron 4 of 18) 23787 NM_001190728 9649 Hs.432842 NM_014636 HPRD:11479 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 561_WT_peak_2406 chr15 22833316 22833973 + 196 NA exon (NM_052903, exon 1 of 23) exon (NM_052903, exon 1 of 23) 249 NM_001102610 114791 Hs.533898 NM_052903 HPRD:12177 TUBGCP5 GCP5 tubulin, gamma complex associated protein 5 protein-coding 561_WT_peak_3763 chr19 39993288 39993578 + 196 NA intron (NM_016941, intron 3 of 7) CpG 3876 NM_016941 10683 Hs.127792 NM_016941 HPRD:04140 DLL3 SCDO1 delta-like 3 (Drosophila) protein-coding 561_WT_peak_455 chr1 146555939 146556775 + 196 NA promoter-TSS (NR_121645) promoter-TSS (NR_121645) -54 NR_121645 101447996 NR_121645 RNVU1-8 RNU1-145|vU1.8 RNA, variant U1 small nuclear 8 snRNA 561_WT_peak_5364 chr3 194304401 194305042 + 196 NA promoter-TSS (NR_047575) promoter-TSS (NR_047575) -276 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 561_WT_peak_6662 chr7 44836320 44837005 + 196 NA intron (NM_021130, intron 1 of 4) CpG 427 NM_001300981 5478 Hs.356331 NM_021130 HPRD:00457 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A (cyclophilin A) protein-coding 561_WT_peak_7352 chr9 95726373 95726926 + 196 NA intron (NM_001286993, intron 1 of 17) intron (NM_001286993, intron 1 of 17) 406 NM_001286993 89846 Hs.411081 NM_033086 HPRD:10957 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 561_WT_peak_4247 chr2 109335621 109336445 + 195 NA promoter-TSS (NM_006267) promoter-TSS (NM_006267) 96 NM_006267 5903 Hs.199561 NM_006267 HPRD:03111 RANBP2 ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2 RAN binding protein 2 protein-coding 561_WT_peak_5348 chr3 186500723 186502024 + 195 NA promoter-TSS (NM_001967) promoter-TSS (NM_001967) 12 NM_001967 1974 Hs.518475 NM_001967 HPRD:03062 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 561_WT_peak_3184 chr17 40831667 40832148 + 195 NA exon (NM_016602, exon 2 of 2) exon (NM_016602, exon 2 of 2) 1938 NM_016602 2826 Hs.744542 NM_016602 CCR10 GPR2 chemokine (C-C motif) receptor 10 protein-coding 561_WT_peak_2510 chr15 64388106 64388577 + 195 NA exon (NM_148955, exon 1 of 13) exon (NM_148955, exon 1 of 13) 258 NM_003099 6642 Hs.188634 NM_003099 HPRD:03171 SNX1 HsT17379|VPS5 sorting nexin 1 protein-coding 561_WT_peak_6064 chr5 180670579 180671191 + 194 NA promoter-TSS (NR_002591) promoter-TSS (NR_002591) 21 NM_006098 10399 Hs.5662 NM_006098 HPRD:01503 GNB2L1 Gnb2-rs1|H12.3|HLC-7|PIG21|RACK1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 protein-coding 561_WT_peak_7584 chrX 77154587 77155181 + 194 NA promoter-TSS (NM_001866) promoter-TSS (NM_001866) -77 NM_001866 1349 Hs.522699 NM_001866 COX7B APLCC cytochrome c oxidase subunit VIIb protein-coding 561_WT_peak_3881 chr19 52531402 52532185 + 194 NA promoter-TSS (NM_025040) promoter-TSS (NM_025040) -113 NM_025040 80110 Hs.292336 NM_025040 HPRD:15874 ZNF614 - zinc finger protein 614 protein-coding 561_WT_peak_4598 chr20 30945480 30946282 + 194 NA promoter-TSS (NM_001164603) promoter-TSS (NM_001164603) -266 NM_001164603 171023 Hs.374043 NM_015338 HPRD:16516 ASXL1 BOPS|MDS additional sex combs like transcriptional regulator 1 protein-coding 561_WT_peak_5061 chr3 39093437 39093885 + 194 NA intron (NM_020839, intron 1 of 18) CpG 154 NM_020839 57599 Hs.109778 NM_020839 HPRD:11146 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 561_WT_peak_5977 chr5 145826896 145827452 + 194 NA intron (NM_006706, intron 1 of 21) CpG 301 NM_006706 10915 Hs.443465 NM_006706 HPRD:10393 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 561_WT_peak_6007 chr5 159546112 159546526 + 194 NA exon (NM_001267035, exon 1 of 3) exon (NM_001267035, exon 1 of 3) 133 NM_001130864 114825 Hs.744960 NM_052927 ENSG00000170234 PWWP2A MST101 PWWP domain containing 2A protein-coding 561_WT_peak_4304 chr2 133036559 133036745 + 194 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -21110 NR_027020 554226 Hs.380689 NR_027019 ENSG00000163046 ANKRD30BL ANKRD30BP3|NCRNA00164 ankyrin repeat domain 30B-like pseudo 561_WT_peak_3168 chr17 38264375 38264748 + 194 NA Intergenic Intergenic -7583 NM_021724 9572 Hs.724 NM_021724 HPRD:03873 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1, group D, member 1 protein-coding 561_WT_peak_6466 chr6 128293053 128293707 + 193 NA intron (NM_001291981, intron 32 of 32) intron (NM_001291981, intron 32 of 32) -53604 NM_001164687 387357 Hs.661756 NM_001010923 HPRD:16662 THEMIS C6orf190|C6orf207|GASP|SPOT|TSEPA|bA325O24.3|bA325O24.4 thymocyte selection associated protein-coding 561_WT_peak_6415 chr6 106094434 106094761 + 193 NA Intergenic Intergenic -243598 NM_002726 5550 Hs.436564 NM_002726 HPRD:02673 PREP PE|PEP prolyl endopeptidase protein-coding 561_WT_peak_4946 chr22 42335951 42336772 + 193 NA promoter-TSS (NM_001110215) promoter-TSS (NM_001110215) -138 NM_001110215 79019 Hs.208912 NM_024053 HPRD:12798 CENPM C22orf18|CENP-M|PANE1|bK250D10.2 centromere protein M protein-coding 561_WT_peak_3264 chr17 56409499 56409952 + 193 NA intron (NR_038413, intron 1 of 3) intron (NR_038413, intron 1 of 3) -1046 NR_029683 406934 NR_029683 miRBase:MI0000458 MIR142 MIRN142 microRNA 142 ncRNA 561_WT_peak_4376 chr2 178076656 178077154 + 193 NA promoter-TSS (NM_194247) promoter-TSS (NM_194247) -517 NM_194247 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 561_WT_peak_5399 chr4 2964749 2965364 + 193 NA promoter-TSS (NM_001004056) promoter-TSS (NM_001004056) 177 NM_001291978 8602 Hs.627133 NM_003703 HPRD:12827 NOP14 C4orf9|NOL14|RES425|UTP2 NOP14 nucleolar protein protein-coding 561_WT_peak_1031 chr10 70848518 70848925 + 193 NA intron (NR_036430, intron 1 of 1) intron (NR_036430, intron 1 of 1) 893 NR_036430 5552 Hs.1908 NM_002727 HPRD:01513 SRGN PPG|PRG|PRG1 serglycin protein-coding 561_WT_peak_3307 chr17 62982079 62982547 + 193 NA Intergenic Intergenic -10610 NR_026903 201283 Hs.396447 NM_153032 HPRD:08720 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 561_WT_peak_4730 chr20 62694289 62694518 + 192 NA 5' UTR (NM_003195, exon 1 of 10) 5' UTR (NM_003195, exon 1 of 10) 393 NM_003195 6919 Hs.505004 NM_003195 HPRD:16069 TCEA2 TFIIS transcription elongation factor A (SII), 2 protein-coding 561_WT_peak_4642 chr20 42694487 42694768 + 192 NA exon (NM_001098797, exon 7 of 9) exon (NM_001098797, exon 7 of 9) 120091 NM_001098798 84969 Hs.26608 NM_032883 HPRD:12734 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 561_WT_peak_1714 chr12 54069491 54070094 + 192 NA intron (NM_001002031, intron 1 of 4) CpG 317 NM_005176 517 Hs.524464 NM_005176 HPRD:04429 ATP5G2 ATP5A ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) protein-coding 561_WT_peak_7203 chr9 4678760 4679768 + 192 NA promoter-TSS (NM_017913) promoter-TSS (NM_017913) 216 NR_121597 101929351 Hs.745404 NR_121597 CDC37L1-AS1 - CDC37L1 antisense RNA 1 (head to head) ncRNA 561_WT_peak_6537 chr6 159074421 159074889 + 192 NA intron (NM_001242395, intron 2 of 15) intron (NM_001242395, intron 2 of 15) 3609 NM_001242394 94120 Hs.436977 NM_001009991 HPRD:15462 SYTL3 SLP3 synaptotagmin-like 3 protein-coding 561_WT_peak_1135 chr10 104262546 104262954 + 192 NA promoter-TSS (NM_005736) promoter-TSS (NM_005736) -238 NM_005736 10121 Hs.153961 NM_005736 HPRD:05507 ACTR1A ARP1|CTRN1 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) protein-coding 561_WT_peak_244 chr1 53308329 53308692 + 192 NA 5' UTR (NM_001004339, exon 1 of 14) 5' UTR (NM_001004339, exon 1 of 14) 327 NM_001004339 440590 Hs.658458 NM_001004339 HPRD:17399 ZYG11A ZYG11 zyg-11 family member A, cell cycle regulator protein-coding 561_WT_peak_7597 chrX 102941335 102941644 + 192 NA promoter-TSS (NR_038978) promoter-TSS (NR_038978) 257 NM_001142429 9643 Hs.326387 NM_012286 HPRD:02326 MORF4L2 MORFL2|MRGX mortality factor 4 like 2 protein-coding 561_WT_peak_5997 chr5 156971580 156971869 + 192 NA intron (NM_033274, intron 3 of 22) intron (NM_033274, intron 3 of 22) 31107 NM_033274 8728 Hs.483944 NM_023038 HPRD:04704 ADAM19 MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 561_WT_peak_1275 chr11 47574730 47575091 + 192 NA promoter-TSS (NM_006560) promoter-TSS (NM_006560) -118 NM_006560 10658 Hs.595333 NM_006560 HPRD:03046 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP, Elav-like family member 1 protein-coding 561_WT_peak_6533 chr6 157956922 157957337 + 192 NA intron (NM_153746, intron 1 of 8) intron (NM_153746, intron 1 of 8) 6965 NR_037463 100500899 NR_037463 MIR3692 - microRNA 3692 ncRNA 561_WT_peak_7029 chr8 59714028 59714286 + 192 NA Intergenic Intergenic -141753 NM_003580 8439 Hs.372000 NM_003580 HPRD:09117 NSMAF FAN neutral sphingomyelinase (N-SMase) activation associated factor protein-coding 561_WT_peak_473 chr1 148247561 148248402 + 191 NA intron (NR_102404, intron 6 of 18).2 CpG -45445 NM_001164261 645142 Hs.730589 NM_001164261 ENSG00000256374 PPIAL4D - peptidylprolyl isomerase A (cyclophilin A)-like 4D protein-coding 561_WT_peak_1565 chr12 7052893 7053488 + 191 NA promoter-TSS (NM_138425) promoter-TSS (NM_138425) -13 NM_138425 113246 Hs.405913 NM_138425 HPRD:13609 C12orf57 C10|GRCC10|TEMTYS chromosome 12 open reading frame 57 protein-coding 561_WT_peak_4631 chr20 37063510 37064123 + 191 NA non-coding (NR_027241, exon 1 of 7) non-coding (NR_027241, exon 1 of 7) 146 NR_015366 388796 Hs.400876 NR_015366 ENSG00000196756 SNHG17 - small nucleolar RNA host gene 17 (non-protein coding) ncRNA 561_WT_peak_3589 chr19 5680449 5680814 + 191 NA promoter-TSS (NM_198533) promoter-TSS (NM_198533) -145 NM_198533 374875 Hs.631840 NM_198533 HPRD:18022 HSD11B1L 11-DH3|11-beta-HSD3|HSD3|SCDR10|SCDR10B|SDR26C2 hydroxysteroid (11-beta) dehydrogenase 1-like protein-coding 561_WT_peak_3636 chr19 12845264 12845663 + 191 NA promoter-TSS (NM_024038) promoter-TSS (NM_024038) 66 NM_024038 79002 Hs.515155 NM_024038 HPRD:14528 C19orf43 fSAP18 chromosome 19 open reading frame 43 protein-coding 561_WT_peak_7239 chr9 32552184 32552728 + 191 NA non-coding (NR_033992, exon 2 of 3) non-coding (NR_033992, exon 2 of 3) 170 NM_001195622 10210 Hs.589962 NM_005802 HPRD:11642 TOPORS LUN|P53BP3|RP31|TP53BPL topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase protein-coding 561_WT_peak_5888 chr5 122758949 122759810 + 191 NA promoter-TSS (NM_001166226) promoter-TSS (NM_001166226) -93 NM_153223 153241 Hs.483209 NM_153223 HPRD:08769 CEP120 CCDC100 centrosomal protein 120kDa protein-coding 561_WT_peak_2912 chr16 75681312 75682510 + 191 NA promoter-TSS (NM_001130089) promoter-TSS (NM_001130089) 276 NM_018975 54386 Hs.301419 NM_018975 HPRD:05452 TERF2IP DRIP5|RAP1 telomeric repeat binding factor 2, interacting protein protein-coding 561_WT_peak_136 chr1 28099213 28099899 + 191 NA promoter-TSS (NM_177424) promoter-TSS (NM_177424) -138 NM_177424 23673 Hs.523855 NM_177424 HPRD:06059 STX12 STX13|STX14 syntaxin 12 protein-coding 561_WT_peak_3155 chr17 37607272 37608011 + 191 NA promoter-TSS (NM_004774) promoter-TSS (NM_004774) -114 NM_004774 5469 Hs.643754 NM_004774 HPRD:05055 MED1 CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2 mediator complex subunit 1 protein-coding 561_WT_peak_1648 chr12 32049522 32049946 + 191 NA Intergenic Intergenic -62619 NM_018169 55196 Hs.445129 NM_018169 HPRD:07691 KIAA1551 C12orf35 KIAA1551 protein-coding 561_WT_peak_33 chr1 6614356 6614739 + 191 NA promoter-TSS (NM_138697) promoter-TSS (NM_138697) 111 NM_024654 79707 Hs.59425 NM_024654 HPRD:08667 NOL9 Grc3|NET6 nucleolar protein 9 protein-coding 561_WT_peak_5028 chr3 17193109 17193691 + 191 NA Intergenic Intergenic 218712 NR_037465 100500913 NR_037465 miRBase:MI0016135 MIR3714 - microRNA 3714 ncRNA 561_WT_peak_7433 chr9 130213374 130214021 + 191 NA promoter-TSS (NM_001005373) promoter-TSS (NM_001005373) 14 NM_000976 6136 Hs.408054 NM_000976 HPRD:01603 RPL12 L12 ribosomal protein L12 protein-coding 561_WT_peak_889 chr10 13343960 13344551 + 191 NA Intergenic CpG -2125 NM_006214 5264 Hs.498732 NM_006214 HPRD:03609 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 561_WT_peak_103 chr1 24151543 24152073 + 191 NA intron (NM_001166059, intron 1 of 6) intron (NM_001166059, intron 1 of 6) 141 NM_000191 3155 Hs.533444 NM_000191 HPRD:02003 HMGCL HL 3-hydroxymethyl-3-methylglutaryl-CoA lyase protein-coding 561_WT_peak_3553 chr19 893335 893658 + 191 NA promoter-TSS (NM_005481) promoter-TSS (NM_005481) 12 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 561_WT_peak_2323 chr14 90849078 90849601 + 191 NA Intergenic CpG -13988 NM_006888 801 Hs.282410 NM_006888 HPRD:00241 CALM1 CALML2|CAMI|CPVT4|DD132|PHKD|caM calmodulin 1 (phosphorylase kinase, delta) protein-coding 561_WT_peak_7342 chr9 93955946 93956645 + 191 NA Intergenic CpG -118881 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 561_WT_peak_1262 chr11 43702350 43702679 + 191 NA exon (NM_016142, exon 1 of 11) exon (NM_016142, exon 1 of 11) 371 NM_016142 51144 Hs.132513 NM_016142 HPRD:09989 HSD17B12 KAR|SDR12C1 hydroxysteroid (17-beta) dehydrogenase 12 protein-coding 561_WT_peak_1261 chr11 43665548 43665966 + 191 NA Intergenic Intergenic -36386 NM_016142 51144 Hs.132513 NM_016142 HPRD:09989 HSD17B12 KAR|SDR12C1 hydroxysteroid (17-beta) dehydrogenase 12 protein-coding 561_WT_peak_2086 chr13 99852632 99852975 + 191 NA promoter-TSS (NM_177967) promoter-TSS (NM_177967) 124 NM_001144072 337867 Hs.508545 NM_177967 ENSG00000134882 UBAC2 PHGDHL1 UBA domain containing 2 protein-coding 561_WT_peak_1156 chr10 121028304 121029207 + 191 NA intron (NM_005308, intron 1 of 15) LTR84b|LTR|ERVL 61558 NM_005308 2869 Hs.524625 NM_005308 HPRD:02926 GRK5 GPRK5 G protein-coupled receptor kinase 5 protein-coding 561_WT_peak_2236 chr14 60558480 60558904 + 190 NA promoter-TSS (NM_022495) promoter-TSS (NM_022495) 63 NM_022495 64430 Hs.509499 NM_022495 HPRD:16604 PCNXL4 C14orf135|FBP2 pecanex-like 4 (Drosophila) protein-coding 561_WT_peak_1268 chr11 46639114 46639549 + 190 NA promoter-TSS (NM_173811) promoter-TSS (NM_173811) 505 NM_001142673 9776 Hs.127403 NM_014741 HPRD:13809 ATG13 KIAA0652|PARATARG8 autophagy related 13 protein-coding 561_WT_peak_6879 chr7 143532972 143533734 + 190 NA intron (NR_015421, intron 1 of 2) intron (NR_015421, intron 1 of 2) 457 NR_015421 154761 Hs.716689 NR_015421 ENSG00000253882 LOC154761 - family with sequence similarity 115, member C pseudogene pseudo 561_WT_peak_57 chr1 11072707 11073070 + 190 NA intron (NM_007375, intron 1 of 5) CpG 209 NM_007375 23435 Hs.300624 NM_007375 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 561_WT_peak_7604 chrX 118925249 118925678 + 190 NA intron (NM_001000, intron 1 of 2) CpG 159 NM_001000 6170 Hs.300141 NM_001000 HPRD:03546 RPL39 L39|RPL39P42|RPL39_23_1806 ribosomal protein L39 protein-coding 561_WT_peak_4570 chr20 17948916 17949478 + 189 NA promoter-TSS (NM_052865) promoter-TSS (NM_052865) 240 NM_014426 27131 Hs.316890 NM_014426 HPRD:10439 SNX5 - sorting nexin 5 protein-coding 561_WT_peak_3605 chr19 8509874 8510468 + 189 NA intron (NM_001297418, intron 1 of 13) CpG 368 NM_031203 4670 Hs.465808 NM_005968 HPRD:01188 HNRNPM CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M heterogeneous nuclear ribonucleoprotein M protein-coding 561_WT_peak_6156 chr6 26216970 26217906 + 188 NA promoter-TSS (NM_003518) promoter-TSS (NM_003518) 290 NM_021052 3012 Hs.121017 NM_021052 HPRD:04152 HIST1H2AE H2A.1|H2A.2|H2A/a|H2AFA histone cluster 1, H2ae protein-coding 561_WT_peak_4786 chr21 36398899 36399298 + 188 NA intron (NM_001754, intron 2 of 8) CpG 12625 NR_026812 80215 Hs.672131 NM_025143 RUNX1-IT1 C21orf96 RUNX1 intronic transcript 1 (non-protein coding) ncRNA 561_WT_peak_637 chr1 179851213 179851653 + 188 NA 5' UTR (NM_015602, exon 1 of 10) 5' UTR (NM_015602, exon 1 of 10) 256 NM_001267578 26092 Hs.496459 NM_015602 HPRD:13958 TOR1AIP1 LAP1|LAP1B torsin A interacting protein 1 protein-coding 561_WT_peak_6053 chr5 180258059 180258592 + 188 NA non-coding (NR_045680, exon 1 of 1) non-coding (NR_045680, exon 1 of 1) 293 NR_045680 100859930 Hs.655606 NR_045680 HEIH HCCAT2|LINC-HEIH|LINC00848|lncRNA-HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA ncRNA 561_WT_peak_2278 chr14 73061095 73061480 + 188 NA Intergenic Intergenic 77759 NR_106994 102465832 NR_106994 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 561_WT_peak_4795 chr21 38739115 38739560 + 188 NA promoter-TSS (NM_101395) promoter-TSS (NM_101395) -522 NM_101395 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 561_WT_peak_4956 chr22 43045495 43045968 + 188 NA promoter-TSS (NM_000398) promoter-TSS (NM_000398) -326 NM_000398 1727 Hs.561064 NM_000398 HPRD:08942 CYB5R3 B5R|DIA1 cytochrome b5 reductase 3 protein-coding 561_WT_peak_6819 chr7 108209713 108210013 + 188 NA promoter-TSS (NM_001287598) promoter-TSS (NM_001287598) 34 NM_182529 168451 Hs.707689 NM_182529 HPRD:15498 THAP5 - THAP domain containing 5 protein-coding 561_WT_peak_7377 chr9 102861199 102861669 + 188 NA promoter-TSS (NM_183245) promoter-TSS (NM_183245) -68 NM_014425 27130 Hs.558477 NM_014425 HPRD:08356 INVS INV|NPH2|NPHP2 inversin protein-coding 561_WT_peak_1092 chr10 93169465 93170017 + 188 NA promoter-TSS (NM_173497) promoter-TSS (NM_173497) -301 NM_001284274 143279 Hs.596096 NM_173497 HPRD:13643 HECTD2 - HECT domain containing E3 ubiquitin protein ligase 2 protein-coding 561_WT_peak_3670 chr19 16477969 16478429 + 188 NA intron (NR_047665, intron 21 of 22) intron (NR_047665, intron 21 of 22) 42548 NM_016270 10365 Hs.744182 NM_016270 HPRD:03602 KLF2 LKLF Kruppel-like factor 2 protein-coding 561_WT_peak_2221 chr14 55518211 55518660 + 187 NA promoter-TSS (NM_144578) promoter-TSS (NM_144578) 73 NM_144578 93487 Hs.594338 NM_144578 HPRD:12647 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1-like protein-coding 561_WT_peak_6018 chr5 171540058 171540365 + 186 NA intron (NM_005990, intron 4 of 18) L1ME4a|LINE|L1 75135 NM_005990 6793 Hs.744005 NM_005990 HPRD:06796 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 561_WT_peak_2128 chr14 23039096 23039482 + 186 NA intron (NM_001344, intron 2 of 2) intron (NM_001344, intron 2 of 2) 18854 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 561_WT_peak_1507 chr11 119039425 119039841 + 186 NA 5' UTR (NM_001282144, exon 1 of 10) 5' UTR (NM_001282144, exon 1 of 10) 211 NM_024618 79671 Hs.524082 NM_024618 HPRD:17640 NLRX1 CLR11.3|DLNB26|NOD26|NOD5|NOD9 NLR family member X1 protein-coding 561_WT_peak_4962 chr22 46067757 46068133 + 186 NA exon (NM_001167621, exon 1 of 11) exon (NM_001167621, exon 1 of 11) 267 NM_013236 25814 Hs.475125 NM_013236 HPRD:04624 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 561_WT_peak_776 chr1 228761530 228761800 + 186 NA Intergenic CpG -18729 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_121 chr1 26798978 26799518 + 186 NA intron (NM_005517, intron 1 of 5) CpG 346 NM_005517 3151 Hs.181163 NM_005517 HMGN2 HMG17 high mobility group nucleosomal binding domain 2 protein-coding 561_WT_peak_5910 chr5 132023839 132024059 + 186 NA Intergenic Intergenic 14271 NM_000589 3565 Hs.73917 NM_000589 HPRD:00989 IL4 BCGF-1|BCGF1|BSF-1|BSF1|IL-4 interleukin 4 protein-coding 561_WT_peak_3356 chr17 74553658 74554043 + 186 NA promoter-TSS (NR_038111) promoter-TSS (NR_038111) 4 NR_038109 100507246 Hs.288215 NR_038108 ENSG00000163597 SNHG16 ncRAN small nucleolar RNA host gene 16 (non-protein coding) ncRNA 561_WT_peak_5906 chr5 131813087 131813703 + 186 NA Intergenic Intergenic 13070 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 561_WT_peak_3887 chr19 54023914 54024307 + 186 NA promoter-TSS (NM_018555) promoter-TSS (NM_018555) -67 NM_018555 55422 Hs.185674 NM_018555 HPRD:05827 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 561_WT_peak_6841 chr7 129690836 129691353 + 185 NA exon (NM_016478, exon 1 of 10) exon (NM_016478, exon 1 of 10) 197 NM_001282190 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 NIPA zinc finger, C3HC-type containing 1 protein-coding 561_WT_peak_3312 chr17 63519569 63519819 + 185 NA Intergenic Intergenic 38046 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 561_WT_peak_7266 chr9 43133611 43133951 + 185 NA promoter-TSS (NM_001012419).2 promoter-TSS (NM_001012419).2 -237 NM_001012421 441430 Hs.632663 NM_001012421 HPRD:18652 ANKRD20A2 - ankyrin repeat domain 20 family, member A2 protein-coding 561_WT_peak_3703 chr19 23869461 23869975 + 185 NA intron (NM_138330, intron 1 of 3) intron (NM_138330, intron 1 of 3) 299 NM_138330 171392 Hs.264345 NM_138330 HPRD:18193 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 561_WT_peak_3531 chr18 72264379 72264887 + 185 NA non-coding (NR_024484, exon 1 of 2) non-coding (NR_024484, exon 1 of 2) 438 NR_024484 400657 Hs.61508 NM_001008234 HPRD:17385 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 561_WT_peak_6413 chr6 106038841 106039196 + 185 NA Intergenic Intergenic -188019 NM_002726 5550 Hs.436564 NM_002726 HPRD:02673 PREP PE|PEP prolyl endopeptidase protein-coding 561_WT_peak_5990 chr5 154134210 154134606 + 185 NA intron (NM_015315, intron 1 of 18) CpG 41946 NM_015315 23367 Hs.292078 NM_015315 HPRD:11225 LARP1 LARP La ribonucleoprotein domain family, member 1 protein-coding 561_WT_peak_5918 chr5 133561194 133561812 + 185 NA promoter-TSS (NR_037434) promoter-TSS (NR_037434) 55 NR_037434 100500905 NR_037434 miRBase:MI0016062 MIR3661 - microRNA 3661 ncRNA 561_WT_peak_3402 chr17 80821866 80822151 + 184 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) -24077 NM_024702 79755 Hs.464391 NM_024702 HPRD:08588 ZNF750 ZFP750 zinc finger protein 750 protein-coding 561_WT_peak_45 chr1 8938886 8939390 + 184 NA promoter-TSS (NM_001428) promoter-TSS (NM_001428) 13 NM_001428 2023 Hs.517145 NM_001428 HPRD:01400 ENO1 ENO1L1|MPB1|NNE|PPH enolase 1, (alpha) protein-coding 561_WT_peak_6822 chr7 112429931 112430468 + 184 NA intron (NM_001287497, intron 1 of 5) CpG 279 NM_022484 64418 Hs.606345 NM_022484 TMEM168 - transmembrane protein 168 protein-coding 561_WT_peak_1620 chr12 14923353 14924229 + 184 NA exon (NM_175054, exon 1 of 1) exon (NM_175054, exon 1 of 1) 274 NM_175054 121504 Hs.745457 NM_175054 HPRD:13662 HIST4H4 H4/p histone cluster 4, H4 protein-coding 561_WT_peak_3796 chr19 45874071 45874289 + 184 NA promoter-TSS (NM_001130867) promoter-TSS (NM_001130867) -335 NM_001130867 2068 Hs.487294 NM_000400 HPRD:00530 ERCC2 COFS2|EM9|TFIIH|TTD|XPD excision repair cross-complementation group 2 protein-coding 561_WT_peak_2772 chr16 30006768 30007534 + 184 NA promoter-TSS (NM_173618) promoter-TSS (NM_173618) 266 NM_003609 8479 Hs.567370 NM_003609 HPRD:04531 HIRIP3 - HIRA interacting protein 3 protein-coding 561_WT_peak_5980 chr5 148930466 148931427 + 184 NA 5' UTR (NM_001271741, exon 1 of 10) 5' UTR (NM_001271741, exon 1 of 10) 169 NM_001271741 1452 Hs.529862 NM_001892 HPRD:02739 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1, alpha 1 protein-coding 561_WT_peak_1326 chr11 62648443 62649037 + 184 NA promoter-TSS (NR_037193) promoter-TSS (NR_037193) 396 NM_001013251 6520 Hs.502769 NM_002394 HPRD:01148 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 (amino acid transporter heavy chain), member 2 protein-coding 561_WT_peak_5992 chr5 154237480 154238017 + 184 NA promoter-TSS (NM_001301074) promoter-TSS (NM_001301074) -61 NM_001301083 9337 Hs.26703 NM_004779 HPRD:07225 CNOT8 CAF1|CALIF|Caf1b|POP2|hCAF1 CCR4-NOT transcription complex, subunit 8 protein-coding 561_WT_peak_7374 chr9 102581705 102582241 + 184 NA intron (NR_109802, intron 1 of 6) CpG 198 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 561_WT_peak_606 chr1 167684628 167684906 + 184 NA Intergenic tRNA-Pro-CCY|tRNA|tRNA -6420 NM_024569 9019 Hs.493919 NM_003953 HPRD:05086 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero-like 1 protein-coding 561_WT_peak_5141 chr3 59436879 59437362 + 184 NA Intergenic Intergenic -401405 NM_198463 200844 Hs.368434 NM_198463 HPRD:13458 C3orf67 - chromosome 3 open reading frame 67 protein-coding 561_WT_peak_4951 chr22 42486313 42486839 + 184 NA promoter-TSS (NR_034118) promoter-TSS (NR_034118) 312 NM_002490 4700 Hs.274416 NM_002490 HPRD:11884 NDUFA6 B14|CI-B14|LYRM6|NADHB14 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa protein-coding 561_WT_peak_5194 chr3 107843421 107843880 + 184 NA promoter-TSS (NR_110030) promoter-TSS (NR_110030) -261 NR_110030 101929623 Hs.570653 NR_110028 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 561_WT_peak_1735 chr12 57881526 57881913 + 184 NA promoter-TSS (NM_004990) promoter-TSS (NM_004990) -17 NM_004990 4141 Hs.632707 NM_004990 HPRD:08864 MARS METRS|MRS|MTRNS|SPG70 methionyl-tRNA synthetase protein-coding 561_WT_peak_3591 chr19 5790591 5791153 + 184 NA intron (NM_001161619, intron 1 of 11) CpG 377 NM_020175 56931 Hs.284297 NM_020175 HPRD:14252 DUS3L DUS3 dihydrouridine synthase 3-like (S. cerevisiae) protein-coding 561_WT_peak_7040 chr8 67025501 67026010 + 184 NA Intergenic Intergenic -13523 NM_184087 84675 Hs.85524 NM_033058 HPRD:05927 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 561_WT_peak_5852 chr5 90678898 90679276 + 184 NA promoter-TSS (NM_020801) promoter-TSS (NM_020801) 62 NM_020801 57561 Hs.24684 NM_020801 HPRD:09810 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 561_WT_peak_4383 chr2 180871573 180871997 + 184 NA promoter-TSS (NM_020943) promoter-TSS (NM_020943) -5 NM_020943 57703 Hs.311363 NM_020943 HPRD:17220 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome-associated protein protein-coding 561_WT_peak_3112 chr17 30227991 30228309 + 184 NA intron (NM_018428, intron 1 of 18) L2c|LINE|L2 579 NM_018428 55813 Hs.589862 NM_018428 UTP6 C17orf40|HCA66 UTP6, small subunit (SSU) processome component, homolog (yeast) protein-coding 561_WT_peak_2313 chr14 81686877 81687307 + 184 NA 5' UTR (NM_015859, exon 1 of 9) 5' UTR (NM_015859, exon 1 of 9) 204 NM_001278940 2957 Hs.592334 NM_015859 HPRD:02748 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA, 1, 19/37kDa protein-coding 561_WT_peak_2546 chr15 72765973 72767081 + 184 NA promoter-TSS (NM_005744) promoter-TSS (NM_005744) -140 NM_005744 25820 Hs.268787 NM_005744 HPRD:05730 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 561_WT_peak_4840 chr22 20818444 20818779 + 183 NA intron (NR_033825, intron 3 of 5) intron (NR_033825, intron 3 of 5) -26465 NM_153334 91179 Hs.474251 NM_153334 HPRD:15299 SCARF2 NSR1|SREC-II|SREC2|SRECRP-1|VDEGS scavenger receptor class F, member 2 protein-coding 561_WT_peak_7579 chrX 71496826 71497142 + 183 NA intron (NM_001007, intron 1 of 6) CpG 157 NM_001007 6191 Hs.118076 NM_001007 RPS4X CCG2|DXS306|RPS4|S4|SCAR|SCR10 ribosomal protein S4, X-linked protein-coding 561_WT_peak_3413 chr18 2636591 2636885 + 183 NA Intergenic Intergenic 18656 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox homolog 3 pseudogene 2 pseudo 561_WT_peak_7083 chr8 101505547 101505739 + 183 NA Intergenic Intergenic 66296 NM_001270378 157567 Hs.530199 NM_198401 HPRD:14103 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 561_WT_peak_7649 chrY 15016787 15017362 + 183 NA intron (NM_004660, intron 1 of 16) CpG 375 NM_004660 8653 Hs.99120 NM_004660 HPRD:02452 DDX3Y DBY DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked protein-coding 561_WT_peak_501 chr1 149859861 149860273 + 183 NA promoter-TSS (NM_175065) promoter-TSS (NM_175065) -601 NM_175065 317772 Hs.664173 NM_175065 HPRD:13659 HIST2H2AB H2AB histone cluster 2, H2ab protein-coding 561_WT_peak_5044 chr3 28390081 28390650 + 183 NA 5' UTR (NM_001134432, exon 1 of 7) 5' UTR (NM_001134432, exon 1 of 7) 253 NM_001134433 64343 Hs.706676 NM_022461 HPRD:10577 AZI2 AZ2|NAP1|TILP 5-azacytidine induced 2 protein-coding 561_WT_peak_5891 chr5 127418515 127418851 + 183 NA promoter-TSS (NM_001046) promoter-TSS (NM_001046) 83 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 561_WT_peak_2720 chr16 20956184 20956530 + 182 NA intron (NM_017539, intron 57 of 61) MER41B|LTR|ERV1 44282 NM_001128302 57149 Hs.745012 NM_020424 HPRD:14254 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 561_WT_peak_1494 chr11 117872290 117872874 + 182 NA TTS (NM_001558) TTS (NM_001558) 15476 NM_001558 3587 Hs.504035 NM_001558 HPRD:00911 IL10RA CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R interleukin 10 receptor, alpha protein-coding 561_WT_peak_4560 chr20 5730707 5730988 + 182 NA promoter-TSS (NM_152504) promoter-TSS (NM_152504) -196 NM_152504 149840 Hs.529340 NM_152504 HPRD:08681 C20orf196 - chromosome 20 open reading frame 196 protein-coding 561_WT_peak_5936 chr5 137514008 137514538 + 182 NA promoter-TSS (NM_001164326) promoter-TSS (NM_001164326) 85 NM_001300966 10902 Hs.519337 NM_006696 HPRD:04166 BRD8 SMAP|SMAP2|p120 bromodomain containing 8 protein-coding 561_WT_peak_890 chr10 14227422 14227793 + 182 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 111324 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 561_WT_peak_5385 chr4 775229 775660 + 182 NA non-coding (NR_036511, exon 1 of 1) non-coding (NR_036511, exon 1 of 1) 192 NR_036512 100129917 Hs.731755 NR_036511 ENSG00000249592 LOC100129917 - uncharacterized LOC100129917 ncRNA 561_WT_peak_2238 chr14 60715358 60715725 + 182 NA promoter-TSS (NM_177951) promoter-TSS (NM_177951) -425 NM_177951 5494 Hs.130036 NM_021003 HPRD:16199 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent, 1A protein-coding 561_WT_peak_2881 chr16 69373043 69373622 + 181 NA promoter-TSS (NM_001199434) promoter-TSS (NM_001199434) -83 NM_016101 51388 Hs.585728 NM_016101 HPRD:16709 NIP7 HSPC031|KD93 NIP7, nucleolar pre-rRNA processing protein protein-coding 561_WT_peak_3198 chr17 42298426 42298718 + 181 NA promoter-TSS (NM_001076683) promoter-TSS (NM_001076683) -322 NM_001076683 7343 Hs.89781 NM_014233 HPRD:02814 UBTF NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor, RNA polymerase I protein-coding 561_WT_peak_1175 chr11 189706 190224 + 181 NA Intergenic TAR1|Satellite|telo -3115 NM_001097610 653486 Hs.127059 NM_001097610 LOC653486 - secretoglobin, family 1C, member 1-like protein-coding 561_WT_peak_5593 chr4 129731166 129731558 + 181 NA 5' UTR (NM_001287439, exon 1 of 11) 5' UTR (NM_001287439, exon 1 of 11) 288 NM_001287440 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 561_WT_peak_4031 chr2 38977818 38978570 + 181 NA intron (NM_001031684, intron 1 of 7) CpG 442 NM_001031684 6432 Hs.309090 NM_006276 HPRD:08991 SRSF7 9G8|AAG3|SFRS7 serine/arginine-rich splicing factor 7 protein-coding 561_WT_peak_6066 chr5 180688367 180688817 + 181 NA promoter-TSS (NM_032765) promoter-TSS (NM_032765) 379 NR_102759 100507602 Hs.126768 NR_102759 ENSG00000248275 TRIM52-AS1 - TRIM52 antisense RNA 1 (head to head) ncRNA 561_WT_peak_5433 chr4 26199105 26199335 + 181 NA Intergenic Intergenic -122112 NM_203283 3516 Hs.479396 NM_005349 HPRD:00920 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 561_WT_peak_7268 chr9 44401978 44402468 + 181 NA Intergenic Intergenic 17638 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 561_WT_peak_1 chr1 10044 10433 + 181 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -1636 NR_046018 100287102 Hs.618434 NR_046018 DDX11L1 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1 pseudo 561_WT_peak_2223 chr14 55658407 55658660 + 180 NA promoter-TSS (NM_014750) promoter-TSS (NM_014750) -137 NM_014750 9787 Hs.77695 NM_014750 HPRD:06490 DLGAP5 DLG7|HURP discs, large (Drosophila) homolog-associated protein 5 protein-coding 561_WT_peak_2295 chr14 75642693 75643368 + 180 NA intron (NM_006827, intron 1 of 4) CpG 319 NM_006827 10972 Hs.74137 NM_006827 HPRD:12013 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23 transmembrane emp24-like trafficking protein 10 (yeast) protein-coding 561_WT_peak_3656 chr19 14550774 14551093 + 180 NA promoter-TSS (NM_213560) promoter-TSS (NM_213560) -153 NM_213560 5585 Hs.466044 NM_002741 HPRD:03019 PKN1 DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1 protein kinase N1 protein-coding 561_WT_peak_1574 chr12 8234383 8235082 + 180 NA promoter-TSS (NR_024260) promoter-TSS (NR_024260) -75 NR_024260 25977 Hs.555927 NM_015509 HPRD:14819 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 561_WT_peak_513 chr1 150336088 150336440 + 180 NA promoter-TSS (NM_015203) promoter-TSS (NM_015203) -323 NM_015203 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 561_WT_peak_2732 chr16 22206937 22207239 + 180 NA Intergenic tRNA-Leu-CTA|tRNA|tRNA -10504 NM_013302 29904 Hs.498892 NM_013302 EEF2K HSU93850|eEF-2K eukaryotic elongation factor-2 kinase protein-coding 561_WT_peak_1427 chr11 81580707 81581067 + 179 NA Intergenic LTR43B|LTR|ERV1 20991 NR_036186 100422823 NR_036186 miRBase:MI0015831 MIR4300 - microRNA 4300 ncRNA 561_WT_peak_224-2 chr1 46153610 46153892 + 179 NA promoter-TSS (NM_016486) promoter-TSS (NM_016486) -96 NM_016486 51249 Hs.699548 NM_016486 TMEM69 C1orf154 transmembrane protein 69 protein-coding 561_WT_peak_224 chr1 46152505 46153386 + 179 NA promoter-TSS (NM_021639) promoter-TSS (NM_021639) -643 NM_021639 60313 Hs.238432 NM_021639 HPRD:15418 GPBP1L1 SP192 GC-rich promoter binding protein 1-like 1 protein-coding 561_WT_peak_5951 chr5 138940317 138940695 + 178 NA promoter-TSS (NM_003339) promoter-TSS (NM_003339) -245 NM_003339 7322 Hs.108332 NM_003339 HPRD:04268 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin-conjugating enzyme E2D 2 protein-coding 561_WT_peak_3339 chr17 73257305 73257704 + 178 NA promoter-TSS (NM_015971) promoter-TSS (NM_015971) 238 NM_014001 23163 Hs.87726 NM_014001 HPRD:10443 GGA3 - golgi-associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding 561_WT_peak_4483 chr2 227655875 227656354 + 178 NA intron (NM_005544, intron 1 of 1) CpG 7392 NM_005544 3667 Hs.471508 NM_005544 HPRD:00943 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 561_WT_peak_3545 chr19 506624 506990 + 178 NA promoter-TSS (NM_033513) promoter-TSS (NM_033513) -690 NM_033513 91978 Hs.369613 NM_033513 HPRD:12701 TPGS1 C19orf20|GTRGEO22|PGs1 tubulin polyglutamylase complex subunit 1 protein-coding 561_WT_peak_6494 chr6 139695422 139696108 + 178 NA promoter-TSS (NM_001168389) promoter-TSS (NM_001168389) 22 NM_006079 10370 Hs.82071 NM_006079 HPRD:04245 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding 561_WT_peak_1052 chr10 75503122 75503388 + 178 NA promoter-TSS (NM_198597) promoter-TSS (NM_198597) -876 NM_198597 9632 Hs.81964 NM_004922 HPRD:06217 SEC24C - SEC24 family member C protein-coding 561_WT_peak_3621 chr19 10765019 10765369 + 178 NA promoter-TSS (NR_024333) promoter-TSS (NR_024333) 257 NM_004516 3609 Hs.465885 NM_004516 HPRD:04420 ILF3 CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NFAR|NFAR-1|NFAR2|TCP110|TCP80 interleukin enhancer binding factor 3, 90kDa protein-coding 561_WT_peak_3562 chr19 1848463 1848878 + 178 NA promoter-TSS (NM_020695) promoter-TSS (NM_020695) -218 NM_020695 57455 Hs.192477 NM_020695 HPRD:15478 REXO1 ELOABP1|EloA-BP1|REX1|TCEB3BP1 REX1, RNA exonuclease 1 homolog (S. cerevisiae) protein-coding 561_WT_peak_3479 chr18 32610060 32610234 + 178 NA intron (NM_001143827, intron 2 of 7) intron (NM_001143827, intron 2 of 7) -11177 NM_014268 10982 Hs.532824 NM_014268 HPRD:16157 MAPRE2 EB1|EB2|RP1 microtubule-associated protein, RP/EB family, member 2 protein-coding 561_WT_peak_1052-2 chr10 75503532 75504057 + 178 NA promoter-TSS (NM_198597) promoter-TSS (NM_198597) -337 NM_198597 9632 Hs.81964 NM_004922 HPRD:06217 SEC24C - SEC24 family member C protein-coding 561_WT_peak_6918 chr7 157094935 157095451 + 178 NA Intergenic Intergenic -34517 NM_005494 10049 Hs.490745 NM_005494 HPRD:07107 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ (Hsp40) homolog, subfamily B, member 6 protein-coding 561_WT_peak_2470 chr15 45929873 45930077 + 178 NA intron (NM_021199, intron 1 of 9) intron (NM_021199, intron 1 of 9) 3037 NM_021199 58472 Hs.511251 NM_021199 HPRD:18102 SQRDL PRO1975 sulfide quinone reductase-like (yeast) protein-coding 561_WT_peak_3078 chr17 21191185 21191622 + 178 NA promoter-TSS (NM_002756) promoter-TSS (NM_002756) 55 NM_002756 5606 Hs.514012 NM_002756 HPRD:03816 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 561_WT_peak_4973 chr22 50714659 50714891 + 178 NA intron (NM_012401, intron 35 of 36) intron (NM_012401, intron 35 of 36) -5953 NM_002751 5600 Hs.57732 NM_002751 HPRD:04208 MAPK11 P38B|P38BETA2|PRKM11|SAPK2|SAPK2B|p38-2|p38Beta mitogen-activated protein kinase 11 protein-coding 561_WT_peak_7490 chr9 141021071 141021444 + 178 NA Intergenic TAR1|Satellite|telo -23308 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin, beta pseudogene 5 pseudo 561_WT_peak_507 chr1 150208198 150208558 + 178 NA 5' UTR (NM_001136478, exon 1 of 6) 5' UTR (NM_001136478, exon 1 of 6) 126 NM_030920 81611 Hs.656466 NM_030920 HPRD:16493 ANP32E LANP-L|LANPL acidic (leucine-rich) nuclear phosphoprotein 32 family, member E protein-coding 561_WT_peak_2052 chr13 50571175 50571718 + 178 NA promoter-TSS (NR_037407) promoter-TSS (NR_037407) 303 NM_052811 10206 Hs.436922 NM_005798 HPRD:10414 TRIM13 CAR|DLEU5|LEU5|RFP2|RNF77 tripartite motif containing 13 protein-coding 561_WT_peak_3546 chr19 507257 508070 + 177 NA exon (NM_033513, exon 1 of 2) exon (NM_033513, exon 1 of 2) 166 NM_033513 91978 Hs.369613 NM_033513 HPRD:12701 TPGS1 C19orf20|GTRGEO22|PGs1 tubulin polyglutamylase complex subunit 1 protein-coding 561_WT_peak_1253 chr11 35684294 35684918 + 177 NA 5' UTR (NM_017583, exon 1 of 5) 5' UTR (NM_017583, exon 1 of 5) 253 NM_017583 54765 Hs.192103 NM_017583 TRIM44 DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 561_WT_peak_1007 chr10 64143843 64144197 + 177 NA intron (NM_199450, intron 2 of 4) intron (NM_199450, intron 2 of 4) -9134 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 561_WT_peak_2147 chr14 24682071 24682694 + 177 NA TTS (NM_138476) TTS (NM_138476) 654 NM_014169 29082 Hs.279761 NM_014169 HPRD:16597 CHMP4A C14orf123|CHMP4|CHMP4B|HSPC134|SHAX2|SNF7|SNF7-1|VPS32-1|VPS32A charged multivesicular body protein 4A protein-coding 561_WT_peak_5279 chr3 141271942 141272302 + 177 NA intron (NM_006506, intron 5 of 23) intron (NM_006506, intron 5 of 23) 66196 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 561_WT_peak_1060 chr10 75935978 75936690 + 177 NA promoter-TSS (NM_001202449) promoter-TSS (NM_001202449) 87 NM_001202449 132 Hs.656586 NM_001123 HPRD:00039 ADK AK adenosine kinase protein-coding 561_WT_peak_106 chr1 24718596 24719011 + 177 NA intron (NM_001199014, intron 2 of 9) intron (NM_001199014, intron 2 of 9) 21459 NM_001199013 90529 Hs.403187 NM_178122 HPRD:14273 STPG1 C1orf201|MAPO2 sperm-tail PG-rich repeat containing 1 protein-coding 561_WT_peak_3200 chr17 42580297 42580802 + 177 NA intron (NM_001002909, intron 1 of 7) CpG 408 NM_001002909 23131 Hs.463129 NM_001002909 GPATCH8 GPATC8|KIAA0553 G patch domain containing 8 protein-coding 561_WT_peak_4469 chr2 219134995 219135314 + 177 NA promoter-TSS (NM_015488) promoter-TSS (NM_015488) 39 NM_001077399 25953 Hs.98475 NM_015488 HPRD:11369 PNKD BRP17|DYT8|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2 paroxysmal nonkinesigenic dyskinesia protein-coding 561_WT_peak_1459 chr11 94884224 94884884 + 177 NA non-coding (NR_110303, exon 1 of 3) non-coding (NR_110303, exon 1 of 3) 851 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 561_WT_peak_3084 chr17 25621005 25621531 + 177 NA promoter-TSS (NR_039748) promoter-TSS (NR_039748) 162 NM_134265 26118 Hs.446017 NM_015626 HPRD:15680 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 561_WT_peak_281 chr1 67769832 67770088 + 177 NA Intergenic Intergenic -3087 NR_047584 3595 Hs.479347 NM_001559 HPRD:03383 IL12RB2 - interleukin 12 receptor, beta 2 protein-coding 561_WT_peak_1682 chr12 49454177 49454596 + 177 NA Intergenic CpG -5279 NM_003482 8085 Hs.731384 NM_003482 HPRD:03664 KMT2D AAD10|ALR|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21 lysine (K)-specific methyltransferase 2D protein-coding 561_WT_peak_6599 chr7 17274034 17274307 + 177 NA Intergenic Intergenic -64106 NM_001621 196 Hs.171189 NM_001621 HPRD:02596 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 561_WT_peak_5861 chr5 98264897 98265422 + 177 NA non-coding (NR_036530, exon 1 of 1) non-coding (NR_036530, exon 1 of 1) 321 NR_036530 100289230 Hs.552095 NR_036530 LOC100289230 - uncharacterized LOC100289230 ncRNA 561_WT_peak_2519 chr15 66111284 66111588 + 177 NA Intergenic Intergenic -26805 NM_001144823 10260 Hs.654567 NM_005848 HPRD:02662 DENND4A IRLB|MYCPBP DENN/MADD domain containing 4A protein-coding 561_WT_peak_4665 chr20 47662863 47663256 + 177 NA promoter-TSS (NR_110624) promoter-TSS (NR_110624) 276 NR_045796 1434 Hs.90073 NM_001316 HPRD:03217 CSE1L CAS|CSE1|XPO2 CSE1 chromosome segregation 1-like (yeast) protein-coding 561_WT_peak_3617 chr19 10443987 10444223 + 177 NA TTS (NM_002162) TTS (NM_002162) 209 NM_133452 125950 Hs.744952 NM_133452 HPRD:11484 RAVER1 - ribonucleoprotein, PTB-binding 1 protein-coding 561_WT_peak_2006 chr13 41593150 41593485 + 177 NA intron (NM_172373, intron 1 of 8) intron (NM_172373, intron 1 of 8) 191 NM_172373 1997 Hs.135646 NM_172373 HPRD:01808 ELF1 - E74-like factor 1 (ets domain transcription factor) protein-coding 561_WT_peak_5341 chr3 183853025 183853423 + 177 NA exon (NM_003907, exon 1 of 16) exon (NM_003907, exon 1 of 16) 414 NM_003907 8893 Hs.283551 NM_003907 HPRD:04898 EIF2B5 CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa protein-coding 561_WT_peak_5920 chr5 133860442 133861469 + 177 NA promoter-TSS (NM_015288) promoter-TSS (NM_015288) -385 NM_001289985 23338 Hs.732155 NM_015288 HPRD:15124 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 561_WT_peak_2112 chr14 20811295 20811762 + 177 NA promoter-TSS (NM_005484) promoter-TSS (NM_005484) 42 NR_002312 85495 Hs.613102 NR_002312 ENSG00000259001 RPPH1 H1RNA|RPPH1-1 ribonuclease P RNA component H1 ncRNA 561_WT_peak_194 chr1 40562565 40562909 + 177 NA intron (NM_000310, intron 1 of 8) CpG 405 NM_001142604 5538 Hs.3873 NM_000310 HPRD:07203 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 561_WT_peak_7502 chrX 12992999 12993611 + 177 NA promoter-TSS (NM_021109) promoter-TSS (NM_021109) 79 NM_021109 7114 Hs.437277 NM_021109 HPRD:02153 TMSB4X FX|PTMB4|TB4X|TMSB4 thymosin beta 4, X-linked protein-coding 561_WT_peak_3694 chr19 19774483 19774879 + 176 NA promoter-TSS (NM_020410) promoter-TSS (NM_020410) -178 NM_020410 57130 Hs.501794 NM_020410 HPRD:12501 ATP13A1 ATP13A ATPase type 13A1 protein-coding 561_WT_peak_3677 chr19 17622499 17623085 + 176 NA intron (NM_012088, intron 1 of 4) CpG 360 NM_012088 25796 Hs.466165 NM_012088 HPRD:12001 PGLS 6PGL 6-phosphogluconolactonase protein-coding 561_WT_peak_5982 chr5 149792590 149792949 + 176 NA promoter-TSS (NM_004355) promoter-TSS (NM_004355) -270 NM_001025159 972 Hs.436568 NM_004355 HPRD:00825 CD74 DHLAG|HLADG|II|Ia-GAMMA CD74 molecule, major histocompatibility complex, class II invariant chain protein-coding 561_WT_peak_3420 chr18 3593979 3594300 + 176 NA promoter-TSS (NR_024101) promoter-TSS (NR_024101) 27 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 561_WT_peak_4139 chr2 71357053 71357358 + 176 NA promoter-TSS (NM_005791) promoter-TSS (NM_005791) 189 NM_032601 84693 Hs.94949 NM_032601 HPRD:12229 MCEE GLOD2 methylmalonyl CoA epimerase protein-coding 561_WT_peak_7017 chr8 48872644 48873150 + 176 NA promoter-TSS (NM_006904) promoter-TSS (NM_006904) 134 NM_005914 4173 Hs.460184 NM_005914 HPRD:09094 MCM4 CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21 minichromosome maintenance complex component 4 protein-coding 561_WT_peak_2196 chr14 50329199 50329765 + 176 NA Intergenic 7SLRNA|srpRNA|srpRNA -9943 NM_004713 9147 Hs.655964 NM_004713 HPRD:08494 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 561_WT_peak_3437 chr18 12376763 12377110 + 175 NA intron (NM_006796, intron 1 of 16) CpG 339 NM_006796 10939 Hs.726355 NM_006796 HPRD:05205 AFG3L2 SCA28|SPAX5 AFG3-like AAA ATPase 2 protein-coding 561_WT_peak_766 chr1 228353396 228353822 + 175 NA promoter-TSS (NR_103540) promoter-TSS (NR_103540) 180 NM_001010867 200205 Hs.237017 NM_001010867 HPRD:17318 IBA57 C1orf69|MMDS3 IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae) protein-coding 561_WT_peak_6283 chr6 32577944 32578142 + 175 NA Intergenic Intergenic -20430 NM_002124 3123 Hs.534322 NM_002124 HPRD:08349 HLA-DRB1 DRB1|DRw10|HLA-DR1B|HLA-DRB|SS1 major histocompatibility complex, class II, DR beta 1 protein-coding 561_WT_peak_7049 chr8 68255685 68255996 + 175 NA promoter-TSS (NM_006421) promoter-TSS (NM_006421) 72 NM_006421 10565 Hs.656902 NM_006421 HPRD:09163 ARFGEF1 ARFGEP1|BIG1|P200 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) protein-coding 561_WT_peak_3412 chr18 712071 712671 + 175 NA exon (NM_202758, exon 1 of 15) exon (NM_202758, exon 1 of 15) 146 NM_202758 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 HSRTSBETA|RTS|TYMSAS enolase superfamily member 1 protein-coding 561_WT_peak_933 chr10 30725920 30726237 + 175 NA intron (NM_001244134, intron 1 of 7) intron (NM_001244134, intron 1 of 7) 3128 NM_005204 1326 Hs.432453 NM_005204 HPRD:01863 MAP3K8 COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 561_WT_peak_5993 chr5 154320601 154320880 + 175 NA intron (NM_001014990, intron 1 of 5) intron (NM_001014990, intron 1 of 5) 107 NM_014180 29093 Hs.483924 NM_014180 HPRD:14748 MRPL22 L22mt|MRP-L22|MRP-L25|RPML25 mitochondrial ribosomal protein L22 protein-coding 561_WT_peak_571 chr1 159046689 159047242 + 175 NA promoter-TSS (NM_004833) promoter-TSS (NM_004833) -318 NM_004833 9447 Hs.733411 NM_004833 HPRD:05202 AIM2 PYHIN4 absent in melanoma 2 protein-coding 561_WT_peak_5259 chr3 131221513 131221977 + 175 NA 5' UTR (NM_007208, exon 1 of 10) 5' UTR (NM_007208, exon 1 of 10) 115 NM_007208 11222 Hs.205163 NM_007208 HPRD:06175 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 561_WT_peak_6933 chr8 17780382 17780928 + 175 NA 5' UTR (NM_006197, exon 1 of 39) 5' UTR (NM_006197, exon 1 of 39) 289 NM_006197 5108 Hs.491148 NM_006197 HPRD:02624 PCM1 PTC4 pericentriolar material 1 protein-coding 561_WT_peak_6217 chr6 27781876 27782217 + 175 NA promoter-TSS (NM_003521) promoter-TSS (NM_003521) 472 NM_021066 8331 Hs.406691 NM_021066 HIST1H2AJ H2A/E|H2AFE|dJ160A22.4 histone cluster 1, H2aj protein-coding 561_WT_peak_4637 chr20 40321853 40322307 + 175 NA Intergenic Intergenic -74947 NM_032221 84181 Hs.740645 NM_032221 HPRD:13049 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 561_WT_peak_6460 chr6 122792460 122792985 + 174 NA promoter-TSS (NM_001270393) promoter-TSS (NM_001270393) 230 NM_020755 57515 Hs.146668 NM_020755 HPRD:15480 SERINC1 TDE1L|TDE2|TMS-2|TMS2 serine incorporator 1 protein-coding 561_WT_peak_3255 chr17 54991125 54991535 + 174 NA promoter-TSS (NM_005082) promoter-TSS (NM_005082) 79 NM_005082 7706 Hs.528952 NM_005082 HPRD:02711 TRIM25 EFP|RNF147|Z147|ZNF147 tripartite motif containing 25 protein-coding 561_WT_peak_3400 chr17 80454828 80455204 + 174 NA Intergenic CpG -22578 NM_004514 3607 Hs.591140 NM_004514 HPRD:00982 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 561_WT_peak_7403 chr9 117453235 117453683 + 174 NA Intergenic Intergenic -9090 NM_001199233 100505478 Hs.200101 NM_001199233 LOC100505478 - uncharacterized LOC100505478 protein-coding 561_WT_peak_774 chr1 228754835 228755134 + 174 NA Intergenic CpG -25410 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_5221 chr3 119395937 119396169 + 174 NA exon (NM_005694, exon 1 of 3) exon (NM_005694, exon 1 of 3) 190 NM_005694 10063 Hs.534383 NM_005694 COX17 - COX17 cytochrome c oxidase copper chaperone protein-coding 561_WT_peak_4860 chr22 25464174 25464502 + 174 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 40397 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 561_WT_peak_3283 chr17 57918062 57918580 + 174 NA promoter-TSS (NR_029493) promoter-TSS (NR_029493) -306 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 561_WT_peak_5160 chr3 75834484 75834763 + 174 NA promoter-TSS (NM_001128223) promoter-TSS (NM_001128223) 111 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 X17|ZNF838 zinc finger protein 717 protein-coding 561_WT_peak_5270 chr3 136471426 136472001 + 174 NA promoter-TSS (NM_005862) promoter-TSS (NM_005862) -468 NM_005862 10274 Hs.412586 NM_005862 HPRD:05076 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 561_WT_peak_3283-2 chr17 57916354 57917875 + 174 NA intron (NM_030938, intron 11 of 11) intron (NM_030938, intron 11 of 11) -1513 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 561_WT_peak_3559 chr19 1383220 1384064 + 173 NA promoter-TSS (NM_024407) promoter-TSS (NM_024407) -241 NM_024407 374291 Hs.211914 NM_024407 NDUFS7 CI-20|CI-20KD|MY017|PSST NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) protein-coding 561_WT_peak_7541 chrX 48768749 48769247 + 173 NA 5' UTR (NM_001282651, exon 1 of 5) 5' UTR (NM_001282651, exon 1 of 5) 237 NM_001032289 7355 Hs.21899 NM_005660 HPRD:02441 SLC35A2 CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL solute carrier family 35 (UDP-galactose transporter), member A2 protein-coding 561_WT_peak_5097 chr3 48646851 48647077 + 173 NA intron (NM_003365, intron 1 of 12) CpG 134 NM_003365 7384 Hs.119251 NM_003365 HPRD:01875 UQCRC1 D3S3191|QCR1|UQCR1 ubiquinol-cytochrome c reductase core protein I protein-coding 561_WT_peak_5502 chr4 74124602 74125169 + 173 NA promoter-TSS (NM_198889) promoter-TSS (NM_198889) -383 NM_198889 26057 Hs.601206 NM_032217 HPRD:10648 ANKRD17 GTAR|NY-BR-16 ankyrin repeat domain 17 protein-coding 561_WT_peak_1317 chr11 62369401 62369666 + 173 NA promoter-TSS (NM_004739) promoter-TSS (NM_004739) -221 NM_004739 9219 Hs.173043 NM_004739 HPRD:07233 MTA2 MTA1L1|PID metastasis associated 1 family, member 2 protein-coding 561_WT_peak_4458 chr2 208393917 208394448 + 172 NA promoter-TSS (NM_134442) promoter-TSS (NM_134442) -434 NM_134442 1385 Hs.516646 NM_004379 HPRD:00442 CREB1 CREB cAMP responsive element binding protein 1 protein-coding 561_WT_peak_7208 chr9 6680856 6681446 + 172 NA Intergenic CpG -35459 NM_000170 2731 Hs.584238 NM_000170 HPRD:01996 GLDC GCE|GCSP|HYGN1 glycine dehydrogenase (decarboxylating) protein-coding 561_WT_peak_7437 chr9 130793331 130793570 + 172 NA Intergenic L1ME1|LINE|L1 36149 NM_197956 203245 Hs.373606 NM_197956 HPRD:12987 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 561_WT_peak_7209 chr9 6681500 6682045 + 172 NA Intergenic Intergenic -36080 NM_000170 2731 Hs.584238 NM_000170 HPRD:01996 GLDC GCE|GCSP|HYGN1 glycine dehydrogenase (decarboxylating) protein-coding 561_WT_peak_2234 chr14 58894073 58894479 + 172 NA promoter-TSS (NM_014749) promoter-TSS (NM_014749) -44 NM_012460 26520 Hs.440525 NM_012460 HPRD:09574 TIMM9 TIM9|TIM9A translocase of inner mitochondrial membrane 9 homolog (yeast) protein-coding 561_WT_peak_2724 chr16 21531247 21532101 + 172 NA promoter-TSS (NR_002594) promoter-TSS (NR_002594) 91 NR_002594 387254 Hs.448808 NR_002594 SLC7A5P2 IMAA|MMAA solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 pseudo 561_WT_peak_1542 chr12 562432 562738 + 172 NA Intergenic CpG -6958 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 561_WT_peak_3470 chr18 22006600 22007156 + 172 NA intron (NM_018439, intron 1 of 10) CpG 269 NM_018439 55364 Hs.515317 NM_018439 HPRD:13739 IMPACT RWDD5 impact RWD domain protein protein-coding 561_WT_peak_6980 chr8 37963039 37963350 + 172 NA promoter-TSS (NM_001105214) promoter-TSS (NM_001105214) -117 NM_001105214 9070 Hs.521530 NM_004674 HPRD:05309 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ash2 (absent, small, or homeotic)-like (Drosophila) protein-coding 561_WT_peak_1379 chr11 66206029 66206278 + 172 NA exon (NM_170739, exon 1 of 6) exon (NM_170739, exon 1 of 6) 166 NR_120589 65003 Hs.418450 NM_016050 HPRD:14739 MRPL11 L11MT|MRP-L11 mitochondrial ribosomal protein L11 protein-coding 561_WT_peak_2932 chr16 85089045 85089491 + 172 NA intron (NM_001286566, intron 1 of 11) L3|LINE|CR1 -7550 NM_001286565 9764 Hs.301658 NM_014732 HPRD:17192 KIAA0513 - KIAA0513 protein-coding 561_WT_peak_3924 chr19 58280874 58281461 + 172 NA 5' UTR (NM_017652, exon 1 of 3) 5' UTR (NM_017652, exon 1 of 3) 147 NM_001077426 54807 Hs.625133 NM_017652 HPRD:15863 ZNF586 - zinc finger protein 586 protein-coding 561_WT_peak_4286 chr2 128145095 128145499 + 172 NA Intergenic CpG -30699 NM_000312 5624 Hs.224698 NM_000312 HPRD:01466 PROC APC|PC|PROC1|THPH3|THPH4 protein C (inactivator of coagulation factors Va and VIIIa) protein-coding 561_WT_peak_2800 chr16 31885138 31885815 + 172 NA intron (NR_049749, intron 1 of 4) CpG 397 NM_001265588 10308 Hs.460645 NM_003414 HPRD:06883 ZNF267 HZF2 zinc finger protein 267 protein-coding 561_WT_peak_58 chr1 11159645 11159869 + 172 NA intron (NM_001001998, intron 1 of 24) CpG 181 NM_001001998 5394 Hs.632368 NM_002685 HPRD:16180 EXOSC10 PM-Scl|PM/Scl-100|PMSCL|PMSCL2|RRP6|Rrp6p|p2|p3|p4 exosome component 10 protein-coding 561_WT_peak_1026 chr10 70660497 70661551 + 172 NA promoter-TSS (NM_024045) promoter-TSS (NM_024045) -10 NM_024045 79009 Hs.522984 NM_024045 HPRD:09910 DDX50 GU2|GUB|RH-II/GuB|mcdrh DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 protein-coding 561_WT_peak_3760 chr19 39902792 39903075 + 172 NA promoter-TSS (NM_022835) promoter-TSS (NM_022835) -817 NM_022835 64857 Hs.631574 NM_022835 HPRD:15148 PLEKHG2 ARHGEF42|CLG pleckstrin homology domain containing, family G (with RhoGef domain) member 2 protein-coding 561_WT_peak_5197 chr3 108525133 108525460 + 171 NA Intergenic Intergenic -16335 NM_016388 50852 Hs.138701 NM_016388 HPRD:05392 TRAT1 TCRIM|TRIM T cell receptor associated transmembrane adaptor 1 protein-coding 561_WT_peak_4953 chr22 42598769 42598991 + 171 NA intron (NM_181492, intron 1 of 3) intron (NM_181492, intron 1 of 3) 12467 NM_181492 6942 Hs.475018 NM_005650 HPRD:04378 TCF20 AR1|SPBP|TCF-20 transcription factor 20 (AR1) protein-coding 561_WT_peak_6153 chr6 26204668 26205370 + 171 NA exon (NM_003545, exon 1 of 1) exon (NM_003545, exon 1 of 1) 146 NM_003545 8367 Hs.662174 NM_003545 HIST1H4E H4/j|H4FJ histone cluster 1, H4e protein-coding 561_WT_peak_2985 chr17 3614437 3614741 + 171 NA Intergenic Intergenic -12608 NM_031965 83903 Hs.534059 NM_031965 HPRD:17083 GSG2 HASPIN germ cell associated 2 (haspin) protein-coding 561_WT_peak_127 chr1 27021865 27022358 + 171 NA promoter-TSS (NM_139135) promoter-TSS (NM_139135) -411 NM_006015 8289 Hs.468972 NM_006015 HPRD:04319 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT rich interactive domain 1A (SWI-like) protein-coding 561_WT_peak_1525 chr11 128172457 128172919 + 171 NA Intergenic (T)n|Simple_repeat|Simple_repeat 219517 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 561_WT_peak_4545 chr20 2644707 2645257 + 171 NA promoter-TSS (NM_001258384) promoter-TSS (NM_001258384) -117 NM_006899 3420 Hs.436405 NM_006899 HPRD:05163 IDH3B H-IDHB|RP46 isocitrate dehydrogenase 3 (NAD+) beta protein-coding 561_WT_peak_3561 chr19 1653038 1653355 + 171 NA promoter-TSS (NM_003200) promoter-TSS (NM_003200) -868 NM_003200 6929 Hs.371282 NM_003200 HPRD:00918 TCF3 E2A|E47|ITF1|TCF-3|VDIR|bHLHb21 transcription factor 3 protein-coding 561_WT_peak_2910 chr16 75467735 75468217 + 171 NA promoter-TSS (NM_006324) promoter-TSS (NM_006324) -589 NM_006324 10428 Hs.461361 NM_006324 HPRD:16282 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 561_WT_peak_594 chr1 161509729 161510354 + 171 NA Intergenic tRNA-Asn-AAC|tRNA|tRNA 9777 NM_001127592 2214 Hs.372679 NM_000569 HPRD:00903 FCGR3A CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3|IMD20 Fc fragment of IgG, low affinity IIIa, receptor (CD16a) protein-coding 561_WT_peak_3407 chr18 96874 97552 + 171 NA Intergenic TAR1|Satellite|telo -11852 NR_033770 727758 Hs.585843 NR_033770 ROCK1P1 - Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 pseudo 561_WT_peak_6855 chr7 135194541 135194835 + 171 NA 5' UTR (NM_013316, exon 1 of 11) 5' UTR (NM_013316, exon 1 of 11) 187 NM_001190850 4850 Hs.490224 NM_013316 HPRD:05369 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex, subunit 4 protein-coding 561_WT_peak_6844-2 chr7 130645686 130646341 + 171 NA intron (NR_109852, intron 4 of 5) intron (NR_109852, intron 4 of 5) 47790 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 561_WT_peak_2955 chr16 89626543 89627008 + 171 NA promoter-TSS (NM_000977) promoter-TSS (NM_000977) -290 NM_001243131 6137 Hs.410817 NM_000977 HPRD:06428 RPL13 BBC1|D16S444E|D16S44E|L13 ribosomal protein L13 protein-coding 561_WT_peak_5462 chr4 48833125 48833671 + 171 NA promoter-TSS (NM_001168254) promoter-TSS (NM_001168254) 75 NM_001168254 54940 Hs.518750 NM_017830 HPRD:17654 OCIAD1 ASRIJ|OCIA|TPA018 OCIA domain containing 1 protein-coding 561_WT_peak_319 chr1 92021583 92022085 + 171 NA Intergenic Intergenic 55169 NM_001134420 8317 Hs.533573 NM_003503 HPRD:10345 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 561_WT_peak_6284 chr6 32590557 32591078 + 171 NA Intergenic Intergenic -14366 NM_002122 3117 Hs.387679 NM_002122 HPRD:06765 HLA-DQA1 CD|CELIAC1|DQ-A1|GSE|HLA-DQA major histocompatibility complex, class II, DQ alpha 1 protein-coding 561_WT_peak_151 chr1 31769340 31769619 + 171 NA promoter-TSS (NM_001282569) promoter-TSS (NM_001282569) 165 NM_004814 9410 Hs.33962 NM_004814 HPRD:08481 SNRNP40 40K|HPRP8BP|PRP8BP|PRPF8BP|SPF38|WDR57 small nuclear ribonucleoprotein 40kDa (U5) protein-coding 561_WT_peak_1025 chr10 70480413 70480909 + 171 NA promoter-TSS (NM_018237) promoter-TSS (NM_018237) -240 NM_001282960 55749 Hs.49853 NM_018237 HPRD:10811 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 561_WT_peak_6844 chr7 130645181 130645542 + 171 NA intron (NR_109852, intron 4 of 5) intron (NR_109852, intron 4 of 5) 47138 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 561_WT_peak_5050 chr3 32338313 32338652 + 171 NA intron (NM_178868, intron 1 of 3) intron (NM_178868, intron 1 of 3) 58311 NM_178868 152189 Hs.154986 NM_178868 HPRD:06989 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF-like MARVEL transmembrane domain containing 8 protein-coding 561_WT_peak_4911 chr22 38245424 38245662 + 170 NA intron (NM_016091, intron 1 of 12) CpG 164 NM_001242923 51386 Hs.446852 NM_016091 HPRD:10932 EIF3L EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005 eukaryotic translation initiation factor 3, subunit L protein-coding 561_WT_peak_2571 chr15 80189098 80189802 + 170 NA promoter-TSS (NM_006441) promoter-TSS (NM_006441) -59 NM_006441 10588 Hs.194294 NM_006441 MTHFS HsT19268 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) protein-coding 561_WT_peak_6014 chr5 170814237 170814611 + 170 NA promoter-TSS (NM_199185) promoter-TSS (NM_199185) -284 NM_002520 4869 Hs.557550 NM_002520 HPRD:01246 NPM1 B23|NPM nucleophosmin (nucleolar phosphoprotein B23, numatrin) protein-coding 561_WT_peak_1312 chr11 61735554 61736134 + 170 NA promoter-TSS (NM_002032) promoter-TSS (NM_002032) -712 NM_002032 2495 Hs.524910 NM_002032 HPRD:00615 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin, heavy polypeptide 1 protein-coding 561_WT_peak_722 chr1 212459111 212459726 + 170 NA 5' UTR (NM_006243, exon 1 of 13) 5' UTR (NM_006243, exon 1 of 13) 539 NM_006243 5525 Hs.744012 NM_006243 HPRD:03384 PPP2R5A B56A|PR61A protein phosphatase 2, regulatory subunit B', alpha protein-coding 561_WT_peak_5240 chr3 127317247 127317601 + 170 NA intron (NR_073375, intron 1 of 15) CpG 224 NR_073375 4171 Hs.477481 NM_004526 HPRD:00303 MCM2 BM28|CCNL1|CDCL1|D3S3194|MITOTIN|cdc19 minichromosome maintenance complex component 2 protein-coding 561_WT_peak_1229 chr11 18547752 18548764 + 170 NA intron (NM_006292, intron 1 of 9) CpG 245 NM_006292 7251 Hs.523512 NM_006292 HPRD:03229 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 561_WT_peak_580 chr1 160807252 160807683 + 170 NA intron (NM_001166664, intron 4 of 7) intron (NM_001166664, intron 4 of 7) 25225 NM_001166664 51744 Hs.157872 NM_016382 HPRD:16121 CD244 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 CD244 molecule, natural killer cell receptor 2B4 protein-coding 561_WT_peak_3985 chr2 25194784 25195478 + 170 NA promoter-TSS (NM_016544) promoter-TSS (NM_016544) 150 NR_034113 729723 Hs.436366 NR_034113 ENSG00000224165 DNAJC27-AS1 - DNAJC27 antisense RNA 1 ncRNA 561_WT_peak_597 chr1 162467622 162467988 + 170 NA exon (NM_144624, exon 1 of 7) exon (NM_144624, exon 1 of 7) 210 NM_144624 127933 Hs.127310 NM_144624 HPRD:12318 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif (UHM) kinase 1 protein-coding 561_WT_peak_649 chr1 183441609 183441871 + 170 NA promoter-TSS (NR_040063) promoter-TSS (NR_040063) 234 NM_173156 9887 Hs.591463 NM_014837 HPRD:10723 SMG7 C1orf16|EST1C|SGA56M SMG7 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_3029 chr17 8022940 8023248 + 170 NA promoter-TSS (NM_001165960) promoter-TSS (NM_001165960) -860 NM_001165960 59344 Hs.232770 NM_021628 HPRD:06231 ALOXE3 ARCI3|E-LOX|eLOX-3|eLOX3 arachidonate lipoxygenase 3 protein-coding 561_WT_peak_2366 chr14 102188286 102188606 + 170 NA Intergenic L1M5|LINE|L1 -8328 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 561_WT_peak_1795 chr12 92602435 92602705 + 170 NA Intergenic MIR|SINE|MIR -62897 NM_001731 694 Hs.255935 NM_001731 BTG1 - B-cell translocation gene 1, anti-proliferative protein-coding 561_WT_peak_2688 chr16 9172706 9173144 + 170 NA Intergenic MLT1J|LTR|ERVL-MaLR -12612 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 561_WT_peak_1269 chr11 46692548 46692911 + 170 NA intron (NM_001142673, intron 17 of 17) intron (NM_001142673, intron 17 of 17) 29486 NM_004308 392 Hs.138860 NM_004308 HPRD:04108 ARHGAP1 CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP Rho GTPase activating protein 1 protein-coding 561_WT_peak_5318 chr3 169898677 169899497 + 170 NA intron (NM_024947, intron 1 of 14) CpG 450 NM_024947 80012 Hs.529592 NM_024947 HPRD:10149 PHC3 EDR3|HPH3 polyhomeotic homolog 3 (Drosophila) protein-coding 561_WT_peak_2448 chr15 42783363 42783668 + 170 NA promoter-TSS (NM_001284307) promoter-TSS (NM_001284307) -120 NM_001284307 64397 Hs.511143 NM_022473 HPRD:10317 ZNF106 SH3BP3|ZFP106|ZNF474 zinc finger protein 106 protein-coding 561_WT_peak_3368 chr17 76744684 76745065 + 170 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) -25042 NM_001292018 9267 Hs.191215 NM_004762 HPRD:01630 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 561_WT_peak_4050 chr2 43823228 43823576 + 170 NA promoter-TSS (NM_001271644) promoter-TSS (NM_001271644) -217 NR_073394 63892 Hs.369592 NM_022065 HPRD:18177 THADA GITA thyroid adenoma associated protein-coding 561_WT_peak_55 chr1 10532341 10532802 + 170 NA promoter-TSS (NM_004401) promoter-TSS (NM_004401) 42 NM_213566 1676 Hs.484782 NM_004401 DFFA DFF-45|DFF1|ICAD DNA fragmentation factor, 45kDa, alpha polypeptide protein-coding 561_WT_peak_7028 chr8 59571682 59572651 + 170 NA promoter-TSS (NM_001144772) promoter-TSS (NM_001144772) -200 NM_001144772 8439 Hs.372000 NM_003580 HPRD:09117 NSMAF FAN neutral sphingomyelinase (N-SMase) activation associated factor protein-coding 561_WT_peak_7420 chr9 127623878 127624205 + 170 NA intron (NM_007209, intron 1 of 3) CpG-27016 199 NM_007209 11224 Hs.182825 NM_007209 HPRD:10200 RPL35 L35 ribosomal protein L35 protein-coding 561_WT_peak_3877 chr19 52097676 52097902 + 170 NA promoter-TSS (NR_034159) promoter-TSS (NR_034159) -156 NR_034159 729975 Hs.716785 NR_034159 ENSG00000167765 LINC01530 - long intergenic non-protein coding RNA 1530 ncRNA 561_WT_peak_7057 chr8 75262685 75263077 + 170 NA intron (NM_018972, intron 1 of 5) CpG 263 NR_046346 54332 Hs.168950 NM_018972 HPRD:05963 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 561_WT_peak_438 chr1 145208935 145209288 + 170 NA promoter-TSS (NM_203458) promoter-TSS (NM_203458) -2 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 561_WT_peak_1899 chr12 122238770 122239291 + 170 NA intron (NR_002809, intron 4 of 6) CpG 2360 NR_002809 338799 Hs.524804 NR_002809 ENSG00000212694 LINC01089 - long intergenic non-protein coding RNA 1089 ncRNA 561_WT_peak_2162 chr14 31677050 31677865 + 170 NA promoter-TSS (NM_015382) promoter-TSS (NM_015382) -728 NM_015382 25831 Hs.708017 NM_015382 HPRD:17098 HECTD1 EULIR HECT domain containing E3 ubiquitin protein ligase 1 protein-coding 561_WT_peak_1947 chr13 21714745 21715017 + 170 NA intron (NM_005870, intron 1 of 3) CpG 228 NM_005870 10284 Hs.524899 NM_005870 HPRD:04256 SAP18 2HOR0202|SAP18P Sin3A-associated protein, 18kDa protein-coding 561_WT_peak_3234 chr17 47269750 47270074 + 170 NA Intergenic CpG 16831 NM_031498 2793 Hs.181781 NM_031498 HPRD:06792 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 protein-coding 561_WT_peak_4244 chr2 105654538 105654811 + 169 NA exon (NM_182640, exon 1 of 11) exon (NM_182640, exon 1 of 11) 191 NM_182640 64965 Hs.590900 NM_182640 HPRD:17602 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 561_WT_peak_5446 chr4 38312010 38312448 + 169 NA Intergenic Intergenic 190654 NM_001253915 23216 Hs.176503 NM_015173 HPRD:18161 TBC1D1 TBC|TBC1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 protein-coding 561_WT_peak_6949 chr8 23145452 23145683 + 169 NA promoter-TSS (NM_001136108) promoter-TSS (NM_001136108) -45 NM_001136108 203069 Hs.458644 NM_001136108 ENSG00000104679 R3HCC1 - R3H domain and coiled-coil containing 1 protein-coding 561_WT_peak_2103 chr13 113242241 113242720 + 169 NA promoter-TSS (NM_001286278) promoter-TSS (NM_001286278) 19 NM_006322 10426 Hs.224152 NM_006322 HPRD:10289 TUBGCP3 104p|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin, gamma complex associated protein 3 protein-coding 561_WT_peak_5984 chr5 150080158 150080632 + 169 NA intron (NM_018047, intron 1 of 10) CpG 274 NM_018047 55696 Hs.713564 NM_018047 HPRD:10186 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 561_WT_peak_5272 chr3 138327604 138327982 + 169 NA promoter-TSS (NM_018147) promoter-TSS (NM_018147) -126 NM_018147 55179 Hs.173438 NM_018147 HPRD:16874 FAIM FAIM1 Fas apoptotic inhibitory molecule protein-coding 561_WT_peak_5306 chr3 160167084 160167351 + 168 NA intron (NM_173084, intron 1 of 2) CpG 409 NM_173084 286827 Hs.212957 NM_173084 HPRD:15568 TRIM59 MRF1|RNF104|TRIM57|TSBF1 tripartite motif containing 59 protein-coding 561_WT_peak_37 chr1 6673459 6673722 + 168 NA promoter-TSS (NM_153812) promoter-TSS (NM_153812) -166 NM_153812 148479 Hs.516079 NM_153812 HPRD:10150 PHF13 PHF5|SPOC1 PHD finger protein 13 protein-coding 561_WT_peak_5448 chr4 39033955 39034109 + 168 NA promoter-TSS (NM_024943) promoter-TSS (NM_024943) 9 NM_024943 80008 Hs.374147 NM_024943 HPRD:08022 TMEM156 - transmembrane protein 156 protein-coding 561_WT_peak_1236 chr11 27528092 27528593 + 168 NA promoter-TSS (NR_002832) promoter-TSS (NR_002832) -16 NM_018362 55327 Hs.91393 NM_018362 HPRD:17279 LIN7C LIN-7-C|LIN-7C|MALS-3|MALS3|VELI3 lin-7 homolog C (C. elegans) protein-coding 561_WT_peak_3876 chr19 51307556 51307825 + 168 NA intron (NM_001290149, intron 1 of 5) CpG 121 NM_032712 84798 Hs.256301 NM_032712 HPRD:14437 C19orf48 - chromosome 19 open reading frame 48 protein-coding 561_WT_peak_6991 chr8 41909456 41910070 + 168 NA promoter-TSS (NM_001099412) promoter-TSS (NM_001099412) -258 NM_001099413 7994 Hs.491577 NM_006766 HPRD:03244 KAT6A MOZ|MYST3|RUNXBP2|ZC2HC6A|ZNF220 K(lysine) acetyltransferase 6A protein-coding 561_WT_peak_3017 chr17 7476190 7477093 + 167 NA intron (NR_037926, intron 12 of 21) CpG 617 NM_001204510 1973 Hs.129673 NM_001416 HPRD:04030 EIF4A1 DDX2A|EIF-4A|EIF4A|eIF-4A-I|eIF4A-I eukaryotic translation initiation factor 4A1 protein-coding 561_WT_peak_2100 chr13 111617419 111617962 + 167 NA Intergenic LTR10F|LTR|ERV1 -50236 NM_001286721 55608 Hs.525163 NM_017664 HPRD:12455 ANKRD10 - ankyrin repeat domain 10 protein-coding 561_WT_peak_1041 chr10 74008335 74008931 + 167 NA Intergenic Intergenic -25044 NM_019058 54541 Hs.744875 NM_019058 HPRD:09662 DDIT4 Dig2|REDD-1|REDD1 DNA-damage-inducible transcript 4 protein-coding 561_WT_peak_4777 chr21 35303789 35304099 + 167 NA non-coding (NR_038883, exon 1 of 3) non-coding (NR_038883, exon 1 of 3) 428 NR_038883 100506334 Hs.532855 NR_038883 ENSG00000237945 LINC00649 - long intergenic non-protein coding RNA 649 ncRNA 561_WT_peak_3221 chr17 45569577 45569950 + 167 NA non-coding (NR_033934, exon 1 of 6) non-coding (NR_033934, exon 1 of 6) 223 NR_033934 653479 Hs.537279 NR_033934 MRPL45P2 - mitochondrial ribosomal protein L45 pseudogene 2 pseudo 561_WT_peak_5879 chr5 112849361 112849771 + 167 NA 5' UTR (NM_022828, exon 1 of 30) 5' UTR (NM_022828, exon 1 of 30) 175 NM_022828 64848 Hs.231942 NM_022828 HPRD:11690 YTHDC2 CAHL YTH domain containing 2 protein-coding 561_WT_peak_2921 chr16 80625073 80625347 + 167 NA Intergenic Intergenic -18505 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 561_WT_peak_1154 chr10 120839674 120840357 + 167 NA intron (NM_003750, intron 1 of 21) CpG 319 NM_003750 8661 Hs.523299 NM_003750 HPRD:03618 EIF3A EIF3|EIF3S10|P167|TIF32|eIF3-p170|eIF3-theta|p180|p185 eukaryotic translation initiation factor 3, subunit A protein-coding 561_WT_peak_6476 chr6 134496115 134496448 + 167 NA promoter-TSS (NM_005627) promoter-TSS (NM_005627) -247 NM_001291995 6446 Hs.510078 NM_005627 HPRD:04264 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 561_WT_peak_4365 chr2 172290453 172291233 + 167 NA promoter-TSS (NM_001164821) promoter-TSS (NM_001164821) 82 NM_001164821 80067 Hs.659439 NM_025000 HPRD:08579 DCAF17 C2orf37 DDB1 and CUL4 associated factor 17 protein-coding 561_WT_peak_3827 chr19 48673728 48673948 + 167 NA promoter-TSS (NM_000234) promoter-TSS (NM_000234) 22 NM_001289063 3978 Hs.1770 NM_000234 HPRD:00534 LIG1 - ligase I, DNA, ATP-dependent protein-coding 561_WT_peak_1155 chr10 120938088 120938333 + 167 NA intron (NM_006793, intron 1 of 6) CpG 167 NM_014098 10935 Hs.523302 NM_006793 HPRD:05305 PRDX3 AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III peroxiredoxin 3 protein-coding 561_WT_peak_1933 chr12 133532743 133533066 + 166 NA promoter-TSS (NM_001164715) promoter-TSS (NM_001164715) -12 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 561_WT_peak_4030 chr2 38894231 38894685 + 166 NA intron (NM_138801, intron 1 of 6) intron (NM_138801, intron 1 of 6) 1406 NM_138801 130589 Hs.435012 NM_138801 HPRD:13559 GALM GLAT|HEL-S-63p|IBD1 galactose mutarotase (aldose 1-epimerase) protein-coding 561_WT_peak_6247 chr6 28912218 28912509 + 166 NA TTS (NR_103538).5 TTS (NR_103538).5 802 NR_103538 729583 Hs.453549 NR_103538 C6orf100 dJ25J6.5 chromosome 6 open reading frame 100 ncRNA 561_WT_peak_2673 chr16 3355022 3355445 + 166 NA promoter-TSS (NM_153028) promoter-TSS (NM_153028) -200 NM_153028 7627 Hs.513292 NM_153028 HPRD:03278 ZNF75A - zinc finger protein 75a protein-coding 561_WT_peak_1386 chr11 66886717 66886985 + 166 NA non-coding (NR_027473, exon 1 of 21) non-coding (NR_027473, exon 1 of 21) 111 NR_027473 22992 Hs.124147 NM_012308 HPRD:05741 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine (K)-specific demethylase 2A protein-coding 561_WT_peak_5431 chr4 26077901 26078207 + 166 NA Intergenic Intergenic 162240 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52 small integral membrane protein 20 protein-coding 561_WT_peak_2195 chr14 50328636 50329105 + 166 NA Intergenic CpG -9331 NM_004713 9147 Hs.655964 NM_004713 HPRD:08494 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 561_WT_peak_7069 chr8 94752769 94753542 + 166 NA promoter-TSS (NM_203390) promoter-TSS (NM_203390) 69 NM_203390 389677 Hs.606916 NM_203390 HPRD:14213 RBM12B MGC:33837 RNA binding motif protein 12B protein-coding 561_WT_peak_4358 chr2 170539581 170539917 + 166 NA intron (NM_001085447, intron 1 of 8) intron (NM_001085447, intron 1 of 8) 11182 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 561_WT_peak_3849 chr19 49588711 49589224 + 166 NA intron (NM_003089, intron 1 of 9) CpG 570 NM_003089 6625 Hs.467097 NM_003089 HPRD:01617 SNRNP70 RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP small nuclear ribonucleoprotein 70kDa (U1) protein-coding 561_WT_peak_5313 chr3 169482344 169483103 + 166 NA non-coding (NR_001566, exon 1 of 1) non-coding (NR_001566, exon 1 of 1) 125 NR_001566 7012 Hs.436182 NR_001566 ENSG00000270141 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 561_WT_peak_2956 chr16 89627109 89627529 + 166 NA promoter-TSS (NR_002450) promoter-TSS (NR_002450) 200 NM_033251 6137 Hs.410817 NM_000977 HPRD:06428 RPL13 BBC1|D16S444E|D16S44E|L13 ribosomal protein L13 protein-coding 561_WT_peak_3274 chr17 57642675 57642887 + 166 NA promoter-TSS (NM_001166301) promoter-TSS (NM_001166301) -105 NM_001166301 79665 Hs.29403 NM_024612 HPRD:06346 DHX40 DDX40|PAD DEAH (Asp-Glu-Ala-His) box polypeptide 40 protein-coding 561_WT_peak_2660 chr16 2563945 2564326 + 165 NA exon (NM_001198569, exon 2 of 4) exon (NM_001198569, exon 2 of 4) 264 NM_001694 527 Hs.389107 NM_001694 HPRD:00162 ATP6V0C ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c protein-coding 561_WT_peak_7554 chrX 54070380 54070845 + 165 NA promoter-TSS (NM_001184898) promoter-TSS (NM_001184898) -5 NM_001184897 23133 Hs.133352 NM_015107 HPRD:06599 PHF8 JHDM1F|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 561_WT_peak_4524 chr2 241525665 241525997 + 165 NA promoter-TSS (NM_023083) promoter-TSS (NM_023083) -98 NR_103792 101752400 Hs.585987 NR_103792 ENSG00000260942 CAPN10-AS1 locus959 CAPN10 antisense RNA 1 (head to head) ncRNA 561_WT_peak_6768 chr7 99613140 99613484 + 165 NA 5' UTR (NM_003439, exon 1 of 6) 5' UTR (NM_003439, exon 1 of 6) 117 NM_001287054 7586 Hs.615360 NM_003439 HPRD:03161 ZKSCAN1 9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33 zinc finger with KRAB and SCAN domains 1 protein-coding 561_WT_peak_6565 chr7 303493 304025 + 165 NA Intergenic Intergenic -26377 NM_001195127 100288524 Hs.702860 NM_001195127 WI2-2373I1.2 - forkhead box L1-like protein-coding 561_WT_peak_7526 chrX 41193389 41194212 + 165 NA intron (NM_001193417, intron 1 of 15) CpG 1149 NM_001193416 1654 Hs.743263 NM_001356 HPRD:02154 DDX3X DBX|DDX14|DDX3|HLP2 DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked protein-coding 561_WT_peak_6323 chr6 42531425 42531788 + 165 NA promoter-TSS (NM_015255) promoter-TSS (NM_015255) -154 NM_015255 23304 Hs.529925 NM_015255 HPRD:09853 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 561_WT_peak_6104 chr6 13328866 13329108 + 165 NA promoter-TSS (NM_001143966) promoter-TSS (NM_001143966) -172 NM_001258457 51256 Hs.484678 NM_016495 HPRD:18165 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family, member 7 protein-coding 561_WT_peak_7620 chrX 135962315 135962885 + 165 NA intron (NM_002139, intron 1 of 8) CpG 339 NR_028476 27316 Hs.380118 NM_002139 HPRD:02186 RBMX HNRNPG|HNRPG|RBMXP1|RBMXRT|RNMX|hnRNP-G RNA binding motif protein, X-linked protein-coding 561_WT_peak_2189 chr14 50086922 50087677 + 165 NA promoter-TSS (NM_002408) promoter-TSS (NM_002408) 104 NM_001001 6166 Hs.444749 NM_001001 RPL36AL RPL36A ribosomal protein L36a-like protein-coding 561_WT_peak_3683 chr19 18668182 18668665 + 165 NA promoter-TSS (NM_001171949) promoter-TSS (NM_001171949) -149 NM_001171949 79036 Hs.714548 NM_024069 HPRD:14526 KXD1 C19orf50|KXDL|MST096|MSTP096 KxDL motif containing 1 protein-coding 561_WT_peak_7558 chrX 55934417 55934706 + 165 NA Intergenic Intergenic 190451 NM_006064 10325 Hs.50282 NM_006064 HPRD:06710 RRAGB RAGB|bA465E19.1 Ras-related GTP binding B protein-coding 561_WT_peak_2491 chr15 55611178 55611614 + 165 NA 5' UTR (NM_004855, exon 1 of 12) 5' UTR (NM_004855, exon 1 of 12) 263 NM_004855 9488 Hs.612814 NM_004855 HPRD:04988 PIGB GPI-MT-III|PIG-B phosphatidylinositol glycan anchor biosynthesis, class B protein-coding 561_WT_peak_2165 chr14 32672324 32673010 + 165 NA promoter-TSS (NR_125730).4 promoter-TSS (NR_125730).4 -192 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 561_WT_peak_3972 chr2 15317158 15317630 + 165 NA intron (NR_052013, intron 50 of 50) intron (NR_052013, intron 50 of 50) 384078 NR_052013 51594 Hs.467759 NM_015909 HPRD:10473 NBAS NAG|SOPH neuroblastoma amplified sequence protein-coding 561_WT_peak_4616 chr20 34541740 34542283 + 164 NA exon (NM_033630, exon 2 of 2) exon (NM_033630, exon 2 of 2) 537 NM_033630 51282 Hs.584909 NM_016558 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 561_WT_peak_3222 chr17 45798576 45798939 + 164 NA Intergenic Intergenic -11853 NM_013351 30009 Hs.272409 NM_013351 HPRD:05355 TBX21 T-PET|T-bet|TBET|TBLYM T-box 21 protein-coding 561_WT_peak_3567 chr19 2257923 2258097 + 164 NA Intergenic AluY|SINE|Alu -1588 NM_144616 126306 Hs.330742 NM_144616 HPRD:08724 JSRP1 JP-45|JP45 junctional sarcoplasmic reticulum protein 1 protein-coding 561_WT_peak_6877 chr7 143318135 143318907 + 164 NA promoter-TSS (NM_173678) promoter-TSS (NM_173678) -21 NM_173678 285966 Hs.743565 NM_173678 HPRD:07117 FAM115C FAM139A family with sequence similarity 115, member C protein-coding 561_WT_peak_5267 chr3 135915306 135916100 + 164 NA Intergenic CpG -1015 NM_018133 55167 Hs.18631 NM_018133 HPRD:08550 MSL2 MSL-2|MSL2L1|RNF184 male-specific lethal 2 homolog (Drosophila) protein-coding 561_WT_peak_3717 chr19 33667822 33668164 + 164 NA Intergenic CpG -17606 NM_002333 4037 Hs.515340 NM_002333 LRP3 - low density lipoprotein receptor-related protein 3 protein-coding 561_WT_peak_283 chr1 67798683 67799179 + 164 NA intron (NR_047583, intron 7 of 13) intron (NR_047583, intron 7 of 13) 25884 NM_001258215 3595 Hs.479347 NM_001559 HPRD:03383 IL12RB2 - interleukin 12 receptor, beta 2 protein-coding 561_WT_peak_6877-2 chr7 143319217 143319567 + 164 NA intron (NM_173678, intron 1 of 6) intron (NM_173678, intron 1 of 6) 850 NM_173678 285966 Hs.743565 NM_173678 HPRD:07117 FAM115C FAM139A family with sequence similarity 115, member C protein-coding 561_WT_peak_3611 chr19 9250970 9251424 + 164 NA non-coding (NR_102435, exon 1 of 7) non-coding (NR_102435, exon 1 of 7) 141 NR_102435 57693 Hs.465829 NM_020933 HPRD:11706 ZNF317 - zinc finger protein 317 protein-coding 561_WT_peak_1270 chr11 47198088 47198493 + 164 NA TTS (NM_001184975) TTS (NM_001184975) 386 NM_001242832 84364 Hs.436204 NM_032389 HPRD:06069 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP-ribosylation factor GTPase activating protein 2 protein-coding 561_WT_peak_6231 chr6 27858204 27858815 + 164 NA promoter-TSS (NM_003535) promoter-TSS (NM_003535) 61 NM_003535 8356 Hs.484990 NM_003535 HPRD:11911 HIST1H3J H3/j|H3FJ histone cluster 1, H3j protein-coding 561_WT_peak_330 chr1 94344386 94345019 + 164 NA promoter-TSS (NM_014597) promoter-TSS (NM_014597) 60 NM_014597 30836 Hs.85769 NM_014597 DNTTIP2 ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2 deoxynucleotidyltransferase, terminal, interacting protein 2 protein-coding 561_WT_peak_353 chr1 109234884 109235565 + 164 NA exon (NM_018061, exon 1 of 6) exon (NM_018061, exon 1 of 6) 289 NR_037185 55119 Hs.342307 NM_018061 HPRD:07664 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 561_WT_peak_6063 chr5 180650208 180650615 + 164 NA promoter-TSS (NR_039781) promoter-TSS (NR_039781) 148 NR_045218 90933 Hs.441488 NM_033549 HPRD:15558 TRIM41 RINCK tripartite motif containing 41 protein-coding 561_WT_peak_4503 chr2 235181232 235181492 + 164 NA Intergenic L1ME3A|LINE|L1 222016 NM_006944 6694 Hs.444488 NM_006944 HPRD:04029 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 561_WT_peak_2481 chr15 51199253 51199574 + 164 NA Intergenic LTR43B|LTR|ERV1 -1456 NM_007347 23431 Hs.413366 NM_007347 HPRD:06258 AP4E1 CPSQ4|SPG51 adaptor-related protein complex 4, epsilon 1 subunit protein-coding 561_WT_peak_5965 chr5 141340401 141340653 + 164 NA Intergenic Intergenic -1900 NM_016580 51294 Hs.439474 NM_016580 HPRD:09287 PCDH12 VE-cadherin-2|VECAD2 protocadherin 12 protein-coding 561_WT_peak_5217 chr3 119041876 119042195 + 163 NA promoter-TSS (NR_046748) promoter-TSS (NR_046748) -428 NR_046748 100874246 Hs.607097 NR_046748 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 561_WT_peak_1755 chr12 68583639 68584038 + 163 NA Intergenic Intergenic -30317 NM_000619 3458 Hs.856 NM_000619 HPRD:00957 IFNG IFG|IFI interferon, gamma protein-coding 561_WT_peak_1445 chr11 85998158 85998489 + 163 NA Intergenic Intergenic 8948 NR_106813 102465452 NR_106813 MIR6755 hsa-mir-6755 microRNA 6755 ncRNA 561_WT_peak_6481 chr6 135375632 135376042 + 163 NA 5' UTR (NM_006620, exon 1 of 18) 5' UTR (NM_006620, exon 1 of 18) 199 NM_001145158 10767 Hs.378532 NM_006620 HPRD:06582 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1-like translational GTPase protein-coding 561_WT_peak_5445 chr4 38132907 38133167 + 163 NA intron (NM_001253912, intron 19 of 20) Tigger12c|DNA|TcMar-Tigger 11462 NM_001253915 23216 Hs.176503 NM_015173 HPRD:18161 TBC1D1 TBC|TBC1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 protein-coding 561_WT_peak_7319 chr9 86322332 86323183 + 163 NA 5' UTR (NM_013438, exon 1 of 11) 5' UTR (NM_013438, exon 1 of 11) 411 NM_013438 29979 Hs.9589 NM_013438 HPRD:05440 UBQLN1 DA41|DSK2|PLIC-1|UBQN|XDRP1 ubiquilin 1 protein-coding 561_WT_peak_975 chr10 43277672 43278250 + 163 NA promoter-TSS (NM_014753) promoter-TSS (NM_014753) 7 NM_014753 9790 Hs.10848 NM_014753 HPRD:10689 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 561_WT_peak_6361 chr6 64281705 64282200 + 163 NA promoter-TSS (NM_003463) promoter-TSS (NM_003463) 35 NM_003463 7803 Hs.227777 NM_003463 HPRD:03349 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase type IVA, member 1 protein-coding 561_WT_peak_2383 chr14 103799816 103800962 + 163 NA promoter-TSS (NM_001969) promoter-TSS (NM_001969) 50 NM_001969 1983 Hs.433702 NM_001969 HPRD:03417 EIF5 EIF-5|EIF-5A eukaryotic translation initiation factor 5 protein-coding 561_WT_peak_6149 chr6 26188826 26189491 + 163 NA exon (NM_003539, exon 1 of 1) exon (NM_003539, exon 1 of 1) 146 NM_003539 8360 Hs.248179 NM_003539 HPRD:11914 HIST1H4D H4/b|H4FB|dJ221C16.9 histone cluster 1, H4d protein-coding 561_WT_peak_5300 chr3 156892500 156893118 + 163 NA Intergenic CpG -14327 NM_020307 57018 Hs.4859 NM_020307 CCNL1 ANIA6A|PRO1073|ania-6a cyclin L1 protein-coding 561_WT_peak_4539 chr20 1305978 1306332 + 163 NA non-coding (NR_040048, exon 1 of 4) non-coding (NR_040048, exon 1 of 4) 168 NR_040047 100507495 Hs.655785 NR_040047 ENSG00000234684 SDCBP2-AS1 - SDCBP2 antisense RNA 1 ncRNA 561_WT_peak_189 chr1 39456506 39456956 + 163 NA promoter-TSS (NM_024595) promoter-TSS (NM_024595) -185 NM_024595 79647 Hs.293563 NM_024595 HPRD:07787 AKIRIN1 C1orf108|STRF2 akirin 1 protein-coding 561_WT_peak_614 chr1 169663488 169663722 + 163 NA intron (NM_000655, intron 8 of 8) intron (NM_000655, intron 8 of 8) 14392 NR_029467 6402 Hs.728756 NM_000655 ENSG00000188404 SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L protein-coding 561_WT_peak_5176 chr3 101237424 101237726 + 163 NA promoter-TSS (NR_036433) promoter-TSS (NR_036433) -136 NR_036433 131909 Hs.518125 NR_036433 ENSG00000175841 FAM172BP FAM172B family with sequence similarity 172, member B pseudogene pseudo 561_WT_peak_2150 chr14 24711685 24712248 + 163 NA promoter-TSS (NM_012461) promoter-TSS (NM_012461) -86 NM_012461 26277 Hs.496191 NM_012461 HPRD:16056 TINF2 DKCA3|TIN2 TERF1 (TRF1)-interacting nuclear factor 2 protein-coding 561_WT_peak_4733 chr20 62917007 62917562 + 163 NA Intergenic TAR1|Satellite|telo -4454 NR_040415 140849 Hs.745565 NR_040415 LINC00266-1 C20orf69|NCRNA00266|NCRNA00266-1|bA476I15.3 long intergenic non-protein coding RNA 266-1 ncRNA 561_WT_peak_6166 chr6 26285367 26286293 + 163 NA promoter-TSS (NM_003543) promoter-TSS (NM_003543) -103 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 561_WT_peak_4302 chr2 133011976 133012491 + 163 NA intron (NR_027020, intron 1 of 4) SSU-rRNA_Hsa|rRNA|rRNA 2420 NR_031608 100313824 NR_031608 miRBase:MI0006336 MIR663B MIRN663B microRNA 663b ncRNA 561_WT_peak_5019 chr3 15106532 15106955 + 163 NA promoter-TSS (NM_022497) promoter-TSS (NM_022497) 73 NM_022497 64432 Hs.657764 NM_022497 HPRD:17594 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 561_WT_peak_7115 chr8 116439812 116440053 + 163 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 240307 NM_001282902 7227 Hs.657018 NM_014112 HPRD:05091 TRPS1 GC79|LGCR trichorhinophalangeal syndrome I protein-coding 561_WT_peak_240 chr1 53098618 53098948 + 162 NA promoter-TSS (NM_001042693) promoter-TSS (NM_001042693) -283 NM_001042693 348378 Hs.424589 NM_182621 HPRD:14678 FAM159A PRO7171|WWLS2783 family with sequence similarity 159, member A protein-coding 561_WT_peak_2676 chr16 3507599 3508113 + 162 NA promoter-TSS (NM_001083600) promoter-TSS (NM_001083600) -136 NM_024845 79903 Hs.513296 NM_024845 HPRD:07852 NAA60 HAT4|NAT15 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding 561_WT_peak_4266 chr2 113341724 113342102 + 162 NA promoter-TSS (NM_032309) promoter-TSS (NM_032309) -123 NM_032309 84269 Hs.375707 NM_032309 HPRD:13046 CHCHD5 C2orf9|MIC14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 561_WT_peak_2701 chr16 12897247 12897691 + 162 NA intron (NM_001099455, intron 1 of 2) CpG 275 NM_001099455 55313 Hs.460002 NM_018340 CPPED1 CSTP1 calcineurin-like phosphoesterase domain containing 1 protein-coding 561_WT_peak_1293 chr11 58345878 58346353 + 161 NA promoter-TSS (NM_053023) promoter-TSS (NM_053023) -472 NR_024091 386607 Hs.524920 NM_170768 ENSG00000255073 ZFP91-CNTF - ZFP91-CNTF readthrough (NMD candidate) ncRNA 561_WT_peak_6837 chr7 128171453 128171782 + 161 NA Intergenic CpG 54834 NM_018396 55798 Hs.433213 NM_018396 HPRD:09705 METTL2B METL|METTL2|METTL2A|PSENIP1 methyltransferase like 2B protein-coding 561_WT_peak_6138 chr6 26031670 26032420 + 161 NA exon (NM_003537, exon 1 of 1) exon (NM_003537, exon 1 of 1) 243 NM_003537 8358 Hs.533292 NM_003537 HPRD:11913 HIST1H3B H3/l|H3FL histone cluster 1, H3b protein-coding 561_WT_peak_5401 chr4 4249701 4250322 + 161 NA promoter-TSS (NM_001297552) promoter-TSS (NM_001297552) -42 NM_001297552 85013 Hs.12845 NM_032927 HPRD:17483 TMEM128 - transmembrane protein 128 protein-coding 561_WT_peak_7470 chr9 135645449 135645725 + 161 NA intron (NM_152572, intron 11 of 12) CpG -99799 NM_022779 64794 Hs.660767 NM_022779 HPRD:10860 DDX31 PPP1R25 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 protein-coding 561_WT_peak_3428 chr18 9102715 9103052 + 161 NA intron (NM_021074, intron 1 of 7) CpG 255 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 561_WT_peak_2161 chr14 31676344 31676988 + 161 NA promoter-TSS (NM_015382) promoter-TSS (NM_015382) 63 NM_015382 25831 Hs.708017 NM_015382 HPRD:17098 HECTD1 EULIR HECT domain containing E3 ubiquitin protein ligase 1 protein-coding 561_WT_peak_6314 chr6 38670601 38670918 + 161 NA exon (NM_006708, exon 1 of 6) exon (NM_006708, exon 1 of 6) 193 NM_006708 2739 Hs.268849 NM_006708 HPRD:00730 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 561_WT_peak_7 chr1 1051424 1051759 + 161 NA 5' UTR (NM_017891, exon 1 of 10) 5' UTR (NM_017891, exon 1 of 10) 145 NM_017891 54991 Hs.235095 NM_017891 HPRD:07930 C1orf159 - chromosome 1 open reading frame 159 protein-coding 561_WT_peak_2391 chr14 105995546 105996018 + 161 NA exon (NM_025268, exon 2 of 2) exon (NM_025268, exon 2 of 2) 2829 NM_025268 80757 Hs.157527 NM_025268 HPRD:14652 TMEM121 hole transmembrane protein 121 protein-coding 561_WT_peak_6272 chr6 31239330 31239873 + 161 NA exon (NM_002117, exon 2 of 8).2 exon (NM_002117, exon 2 of 8).2 312 NM_001243042 3107 Hs.77961 NM_002117 HPRD:00829 HLA-C D6S204|HLA-JY3|HLC-C|PSORS1 major histocompatibility complex, class I, C protein-coding 561_WT_peak_7216 chr9 19048949 19049684 + 161 NA promoter-TSS (NM_006570) promoter-TSS (NM_006570) 36 NM_001287049 158297 Hs.731593 NM_153707 HPRD:16676 FAM154A C9orf138 family with sequence similarity 154, member A protein-coding 561_WT_peak_6216 chr6 27777805 27778303 + 161 NA exon (NM_003536, exon 1 of 1) exon (NM_003536, exon 1 of 1) 212 NM_003536 8357 Hs.591778 NM_003536 HPRD:11912 HIST1H3H H3/k|H3F1K|H3FK histone cluster 1, H3h protein-coding 561_WT_peak_3938 chr19 59030728 59031354 + 161 NA promoter-TSS (NM_032792) promoter-TSS (NM_032792) -120 NM_032792 84878 Hs.515662 NM_032792 HPRD:15808 ZBTB45 ZNF499 zinc finger and BTB domain containing 45 protein-coding 561_WT_peak_1973 chr13 29233203 29233582 + 160 NA intron (NM_015932, intron 1 of 5) CpG 251 NM_015932 51371 Hs.268742 NM_015932 HPRD:12613 POMP C13orf12|PNAS-110|UMP1 proteasome maturation protein protein-coding 561_WT_peak_5871 chr5 108745934 108746404 + 160 NA promoter-TSS (NM_014819) promoter-TSS (NM_014819) -494 NM_014819 9867 Hs.483036 NM_014819 HPRD:11436 PJA2 Neurodap1|RNF131 praja ring finger 2, E3 ubiquitin protein ligase protein-coding 561_WT_peak_2476 chr15 50646090 50647348 + 160 NA non-coding (NR_024490, exon 1 of 1) non-coding (NR_024490, exon 1 of 1) 348 NR_024490 100129387 Hs.659360 NR_024490 GABPB1-AS1 - GABPB1 antisense RNA 1 ncRNA 561_WT_peak_7560 chrX 57618397 57618868 + 160 NA exon (NM_007157, exon 1 of 1) exon (NM_007157, exon 1 of 1) 363 NM_007157 158586 Hs.156257 NM_007157 HPRD:11777 ZXDB ZNF905|dJ83L6.1 zinc finger, X-linked, duplicated B protein-coding 561_WT_peak_1622 chr12 15114566 15115043 + 160 NA promoter-TSS (NM_001175) promoter-TSS (NM_001175) -242 NM_001175 397 Hs.504877 NM_001175 HPRD:04162 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor (GDI) beta protein-coding 561_WT_peak_1767 chr12 72057820 72058327 + 159 NA promoter-TSS (NM_144982) promoter-TSS (NM_144982) -324 NM_144982 196441 Hs.245798 NM_144982 HPRD:14489 ZFC3H1 CCDC131|PSRC2 zinc finger, C3H1-type containing protein-coding 561_WT_peak_1442 chr11 85534867 85535265 + 159 NA Intergenic Intergenic -12864 NM_001289608 54843 Hs.369520 NM_032379 HPRD:10260 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin-like 2 protein-coding 561_WT_peak_1652 chr12 38710401 38710756 + 159 NA promoter-TSS (NM_001013620) promoter-TSS (NM_001013620) 21 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 561_WT_peak_116 chr1 25969220 25969539 + 159 NA intron (NM_001289010, intron 1 of 11) intron (NM_001289010, intron 1 of 11) 25420 NM_020379 57134 Hs.197043 NM_020379 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase, alpha, class 1C, member 1 protein-coding 561_WT_peak_6653 chr7 43965786 43966336 + 159 NA promoter-TSS (NM_001077664) promoter-TSS (NM_001077664) 26 NM_015983 51619 Hs.19196 NM_015983 HPRD:14242 UBE2D4 HBUCE1 ubiquitin-conjugating enzyme E2D 4 (putative) protein-coding 561_WT_peak_6987 chr8 38644814 38645320 + 159 NA 5' UTR (NM_006283, exon 1 of 13) 5' UTR (NM_006283, exon 1 of 13) 345 NM_006283 6867 Hs.279245 NM_006283 HPRD:10391 TACC1 Ga55 transforming, acidic coiled-coil containing protein 1 protein-coding 561_WT_peak_1767-2 chr12 72057562 72057678 + 159 NA promoter-TSS (NM_031435) promoter-TSS (NM_031435) -57 NM_031435 83591 Hs.245798 NM_031435 HPRD:10896 THAP2 - THAP domain containing, apoptosis associated protein 2 protein-coding 561_WT_peak_5127 chr3 53381289 53381978 + 159 NA promoter-TSS (NM_001290205) promoter-TSS (NM_001290205) 21 NM_001290204 55802 Hs.476353 NM_018403 HPRD:06113 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 561_WT_peak_3073 chr17 19880622 19881294 + 159 NA exon (NM_007202, exon 1 of 15) exon (NM_007202, exon 1 of 15) 211 NM_007202 11216 Hs.642676 NM_007202 HPRD:05259 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A kinase (PRKA) anchor protein 10 protein-coding 561_WT_peak_1942 chr13 20993722 20994196 + 159 NA intron (NM_015974, intron 5 of 7) intron (NM_015974, intron 5 of 7) 14026 NR_039721 100616304 NR_039721 MIR4499 - microRNA 4499 ncRNA 561_WT_peak_1265 chr11 44883763 44883967 + 159 NA intron (NM_130783, intron 2 of 8) intron (NM_130783, intron 2 of 8) 87894 NM_001258320 9537 Hs.554791 NM_006034 HPRD:15545 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 561_WT_peak_810 chr1 235667779 235668045 + 159 NA promoter-TSS (NM_152490) promoter-TSS (NM_152490) -131 NM_152490 148789 Hs.498143 NM_152490 HPRD:16533 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 561_WT_peak_576 chr1 160313001 160313406 + 159 NA exon (NM_015331, exon 1 of 17) exon (NM_015331, exon 1 of 17) 140 NM_001290184 23385 Hs.517249 NM_015331 HPRD:05584 NCSTN ATAG1874 nicastrin protein-coding 561_WT_peak_5620 chr4 152681934 152682440 + 159 NA promoter-TSS (NM_004564) promoter-TSS (NM_004564) -12 NM_004564 5188 Hs.119316 NM_004564 HPRD:04706 GATB PET112|PET112L glutamyl-tRNA(Gln) amidotransferase, subunit B protein-coding 561_WT_peak_2976 chr17 2169289 2169655 + 159 NA promoter-TSS (NM_001256827) promoter-TSS (NM_001256827) 21 NM_001256827 23293 Hs.448342 NM_017575 HPRD:06502 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_6875 chr7 141437788 141438493 + 159 NA promoter-TSS (NM_001256513) promoter-TSS (NM_001256513) 19 NR_046269 6742 Hs.490394 NM_003143 HPRD:02703 SSBP1 Mt-SSB|SOSS-B1|SSBP|mtSSB single-stranded DNA binding protein 1, mitochondrial protein-coding 561_WT_peak_7185 chr8 145002600 145002992 + 159 NA intron (NM_201383, intron 25 of 31) intron (NM_201383, intron 25 of 31) 10962 NM_201384 5339 Hs.434248 NM_000445 HPRD:03180 PLEC EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 561_WT_peak_2926 chr16 82687393 82687847 + 159 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 27221 NM_001220488 1012 Hs.654386 NM_001257 HPRD:03219 CDH13 CDHH|P105 cadherin 13 protein-coding 561_WT_peak_5929 chr5 134209889 134210243 + 159 NA 5' UTR (NM_024715, exon 1 of 5) 5' UTR (NM_024715, exon 1 of 5) 606 NM_024715 79770 Hs.741304 NM_024715 HPRD:08658 TXNDC15 C5orf14|UNQ335 thioredoxin domain containing 15 protein-coding 561_WT_peak_112 chr1 25348809 25349594 + 158 NA Intergenic Intergenic -57700 NM_001031680 864 Hs.170019 NM_004350 HPRD:02565 RUNX3 AML2|CBFA3|PEBP2aC runt-related transcription factor 3 protein-coding 561_WT_peak_3803 chr19 45981753 45982059 + 158 NA Intergenic tRNA-SeC(e)-TGA|tRNA|tRNA 10653 NM_006732 2354 Hs.590958 NM_006732 HPRD:01270 FOSB AP-1|G0S3|GOS3|GOSB FBJ murine osteosarcoma viral oncogene homolog B protein-coding 561_WT_peak_3191 chr17 41393172 41393515 + 158 NA Intergenic Intergenic -12281 NR_047479 100874261 Hs.546898 NR_047479 ENSG00000236383 LINC00854 TMEM106A-AS1 long intergenic non-protein coding RNA 854 ncRNA 561_WT_peak_2285 chr14 74417031 74417315 + 158 NA promoter-TSS (NM_152445) promoter-TSS (NM_152445) -56 NM_152445 145483 Hs.550547 NM_152445 HPRD:12649 FAM161B C14orf44|c14_5547 family with sequence similarity 161, member B protein-coding 561_WT_peak_5939 chr5 137795091 137795311 + 158 NA Intergenic Intergenic -5980 NM_001964 1958 Hs.326035 NM_001964 HPRD:00549 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 561_WT_peak_1990 chr13 34116976 34117507 + 158 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 133731 NM_001243476 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 561_WT_peak_5185-2 chr3 101569355 101569589 + 158 NA intron (NM_031419, intron 1 of 11) intron (NM_031419, intron 1 of 11) 1114 NM_031419 64332 Hs.319171 NM_031419 HPRD:09217 NFKBIZ IKBZ|INAP|MAIL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta protein-coding 561_WT_peak_5185 chr3 101568768 101569066 + 158 NA intron (NM_031419, intron 1 of 11) CpG 559 NM_031419 64332 Hs.319171 NM_031419 HPRD:09217 NFKBIZ IKBZ|INAP|MAIL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta protein-coding 561_WT_peak_5934 chr5 137089850 137090082 + 158 NA promoter-TSS (NM_006805) promoter-TSS (NM_006805) 73 NM_006805 10949 Hs.96996 NM_006805 HPRD:17112 HNRNPA0 HNRPA0 heterogeneous nuclear ribonucleoprotein A0 protein-coding 561_WT_peak_213 chr1 45273052 45273452 + 158 NA promoter-TSS (NM_001136537) promoter-TSS (NM_001136537) -295 NM_001013632 343521 Hs.585137 NM_001013632 HPRD:15762 TCTEX1D4 - Tctex1 domain containing 4 protein-coding 561_WT_peak_6609 chr7 21937772 21938056 + 157 NA intron (NM_001277115, intron 79 of 81) L1M7|LINE|L1 47628 NM_018719 55536 Hs.744069 NM_018719 HPRD:11481 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7-like protein-coding 561_WT_peak_3550 chr19 633186 633683 + 157 NA exon (NM_005035, exon 1 of 21) exon (NM_005035, exon 1 of 21) 134 NM_005035 5442 Hs.254113 NM_005035 HPRD:03468 POLRMT APOLMT|MTRNAP|MTRPOL|h-mtRPOL polymerase (RNA) mitochondrial (DNA directed) protein-coding 561_WT_peak_7254 chr9 36487978 36488349 + 157 NA Intergenic Intergenic -84696 NM_001256689 9833 Hs.184339 NM_014791 HPRD:06119 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 561_WT_peak_3318 chr17 65821530 65821820 + 157 NA promoter-TSS (NM_004459) promoter-TSS (NM_004459) -105 NM_004459 2186 Hs.444200 NM_004459 HPRD:03490 BPTF FAC1|FALZ|NURF301 bromodomain PHD finger transcription factor protein-coding 561_WT_peak_7354 chr9 96928642 96928865 + 157 NA Intergenic CpG -9486 NR_029476 406881 NR_029476 miRBase:MI0000060 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 561_WT_peak_1070 chr10 80062800 80063308 + 157 NA Intergenic CpG 35969 NR_073447 414243 Hs.55047 NR_073447 ENSG00000227136 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 561_WT_peak_7105 chr8 104426949 104427356 + 157 NA non-coding (NR_102337, exon 1 of 6) non-coding (NR_102337, exon 1 of 6) 210 NM_015420 25879 Hs.532265 NM_015420 HPRD:08528 DCAF13 GM83|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 561_WT_peak_1625 chr12 22697230 22697535 + 157 NA promoter-TSS (NM_014802) promoter-TSS (NM_014802) 98 NM_001286175 9847 Hs.271014 NM_014802 HPRD:11087 C2CD5 CDP138|KIAA0528 C2 calcium-dependent domain containing 5 protein-coding 561_WT_peak_4618 chr20 34638359 34638860 + 157 NA non-coding (NR_027451, exon 1 of 1) non-coding (NR_027451, exon 1 of 1) 273 NR_027451 647979 Hs.743232 NR_027451 ENSG00000260032 LINC00657 - long intergenic non-protein coding RNA 657 ncRNA 561_WT_peak_6033 chr5 176561126 176561561 + 157 NA intron (NM_022455, intron 1 of 22) CpG-21454 510 NM_022455 64324 Hs.106861 NM_022455 HPRD:09455 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 561_WT_peak_3896 chr19 55629054 55629332 + 157 NA promoter-TSS (NM_001271618) promoter-TSS (NM_001271618) -225 NM_001271618 54776 Hs.631579 NM_017607 HPRD:11452 PPP1R12C LENG3|MBS85|p84|p85 protein phosphatase 1, regulatory subunit 12C protein-coding 561_WT_peak_6061 chr5 180645159 180645498 + 157 NA Intergenic tRNA-Val-GTY|tRNA|tRNA 4305 NR_039781 100616342 NR_039781 miRBase:MI0017265 MIR4638 - microRNA 4638 ncRNA 561_WT_peak_596 chr1 161735958 161736507 + 157 NA exon (NM_007348, exon 1 of 16) exon (NM_007348, exon 1 of 16) 198 NM_007348 22926 Hs.492740 NM_007348 HPRD:16118 ATF6 ATF6A activating transcription factor 6 protein-coding 561_WT_peak_1583 chr12 9803396 9803694 + 157 NA intron (NR_002814, intron 1 of 3) MER92A|LTR|ERV1 2902 NR_046446 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2, member D pseudogene pseudo 561_WT_peak_1189 chr11 3862502 3863095 + 157 NA promoter-TSS (NM_001665) promoter-TSS (NM_001665) -585 NM_001665 391 Hs.501728 NM_001665 HPRD:01537 RHOG ARHG ras homolog family member G protein-coding 561_WT_peak_7638 chrY 2332121 2332555 + 157 NA intron (NM_145177, intron 1 of 6).2 intron (NM_145177, intron 1 of 6).2 36242 NM_001171135 9189 Hs.131452 NM_004729 HPRD:02170 ZBED1 ALTE|DREF|TRAMP|hDREF zinc finger, BED-type containing 1 protein-coding 561_WT_peak_6151 chr6 26196729 26197650 + 157 NA exon (NM_003530, exon 2 of 2) exon (NM_003530, exon 2 of 2) 2332 NM_003530 8351 Hs.532144 NM_003530 HPRD:11905 HIST1H3D H3/b|H3FB histone cluster 1, H3d protein-coding 561_WT_peak_5592 chr4 128981905 128982390 + 157 NA promoter-TSS (NM_032239) promoter-TSS (NM_032239) -274 NM_001278604 55132 Hs.657067 NM_018078 HPRD:10963 LARP1B LARP2 La ribonucleoprotein domain family, member 1B protein-coding 561_WT_peak_6220 chr6 27791597 27792395 + 157 NA promoter-TSS (NM_021968) promoter-TSS (NM_021968) 93 NM_021968 8363 Hs.278483 NM_021968 HPRD:11917 HIST1H4J H4/e|H4F2iv|H4FE|dJ160A22.2 histone cluster 1, H4j protein-coding 561_WT_peak_2220 chr14 55493928 55494343 + 156 NA promoter-TSS (NM_007086) promoter-TSS (NM_007086) 291 NM_199421 122809 Hs.744302 NM_080867 HPRD:18084 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding 561_WT_peak_7172 chr8 141601373 141601878 + 156 NA intron (NM_012154, intron 1 of 18) intron (NM_012154, intron 1 of 18) 44021 NM_012154 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 561_WT_peak_6095 chr6 8435439 8435726 + 156 NA promoter-TSS (NR_038979) promoter-TSS (NR_038979) 218 NM_001142541 51000 Hs.285847 NM_015948 HPRD:11577 SLC35B3 C6orf196|PAPST2 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3 protein-coding 561_WT_peak_3780 chr19 42746773 42747378 + 156 NA promoter-TSS (NM_019884) promoter-TSS (NM_019884) -339 NM_019884 2931 Hs.466828 NM_019884 HPRD:06002 GSK3A - glycogen synthase kinase 3 alpha protein-coding 561_WT_peak_650 chr1 183885292 183885516 + 156 NA intron (NM_001297671, intron 15 of 17) intron (NM_001297671, intron 15 of 17) 111189 NM_001297672 23179 Hs.497148 NM_015149 HPRD:12032 RGL1 RGL ral guanine nucleotide dissociation stimulator-like 1 protein-coding 561_WT_peak_3260 chr17 56084386 56084666 + 156 NA non-coding (NR_034041, exon 1 of 4) non-coding (NR_034041, exon 1 of 4) 181 NR_034041 6426 Hs.68714 NM_006924 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine/arginine-rich splicing factor 1 protein-coding 561_WT_peak_6680 chr7 63386651 63386912 + 156 NA Intergenic CpG 103699 NR_039987 100506050 Hs.405628 NR_039987 LINC01005 - long intergenic non-protein coding RNA 1005 ncRNA 561_WT_peak_3920 chr19 58125582 58125906 + 156 NA promoter-TSS (NM_003435) promoter-TSS (NM_003435) -86 NM_003435 7693 Hs.469694 NM_003435 ZNF134 pHZ-15 zinc finger protein 134 protein-coding 561_WT_peak_3391 chr17 79829284 79829682 + 156 NA promoter-TSS (NM_001185078) promoter-TSS (NM_001185078) -201 NM_001301240 396 Hs.159161 NM_004309 HPRD:03565 ARHGDIA GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1 Rho GDP dissociation inhibitor (GDI) alpha protein-coding 561_WT_peak_4312 chr2 135809746 135810415 + 156 NA intron (NM_001172435, intron 2 of 24) intron (NM_001172435, intron 2 of 24) 245 NM_001172435 22930 Hs.306327 NM_012233 HPRD:16002 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein subunit 1 (catalytic) protein-coding 561_WT_peak_2614 chr15 92401013 92401391 + 156 NA intron (NM_013272, intron 1 of 9) intron (NM_013272, intron 1 of 9) 4264 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 561_WT_peak_2410 chr15 25683509 25684145 + 156 NA 5' UTR (NM_000462, exon 1 of 14) 5' UTR (NM_000462, exon 1 of 14) 348 NM_000462 7337 Hs.598862 NM_000462 HPRD:03375 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 561_WT_peak_4379 chr2 178257179 178257768 + 156 NA promoter-TSS (NM_003659) promoter-TSS (NM_003659) 2 NM_003659 8540 Hs.516543 NM_003659 HPRD:04337 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY alkylglycerone phosphate synthase protein-coding 561_WT_peak_5006 chr3 12598352 12598846 + 156 NA promoter-TSS (NM_014160) promoter-TSS (NM_014160) 86 NM_014160 23609 Hs.591666 NM_014160 HPRD:09761 MKRN2 RNF62 makorin ring finger protein 2 protein-coding 561_WT_peak_2938 chr16 87799596 87800092 + 156 NA promoter-TSS (NM_017566) promoter-TSS (NM_017566) -246 NM_001184856 54758 Hs.123450 NM_017566 HPRD:11180 KLHDC4 - kelch domain containing 4 protein-coding 561_WT_peak_7214 chr9 15422560 15422914 + 156 NA promoter-TSS (NM_001039697) promoter-TSS (NM_001039697) -45 NM_001039697 6619 Hs.546299 NM_003084 HPRD:03826 SNAPC3 PTFbeta|SNAP50 small nuclear RNA activating complex, polypeptide 3, 50kDa protein-coding 561_WT_peak_3801 chr19 45971362 45972053 + 156 NA 5' UTR (NM_001114171, exon 1 of 3) 5' UTR (NM_001114171, exon 1 of 3) 454 NM_006732 2354 Hs.590958 NM_006732 HPRD:01270 FOSB AP-1|G0S3|GOS3|GOSB FBJ murine osteosarcoma viral oncogene homolog B protein-coding 561_WT_peak_7460 chr9 132650567 132650974 + 156 NA 3' UTR (NM_015033, exon 17 of 17) 3' UTR (NM_015033, exon 17 of 17) 18886 NR_106914 102466750 NR_106914 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 561_WT_peak_2496 chr15 57025691 57025997 + 156 NA 5' UTR (NM_001288588, exon 1 of 22) 5' UTR (NM_001288588, exon 1 of 22) 440 NM_017661 54816 Hs.511477 NM_017661 HPRD:15448 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 561_WT_peak_3110 chr17 29835772 29836035 + 156 NA intron (NM_032932, intron 3 of 14) intron (NM_032932, intron 3 of 14) -25998 NR_039877 100616248 NR_039877 miRBase:MI0017361 MIR4724 - microRNA 4724 ncRNA 561_WT_peak_3930 chr19 58789759 58790230 + 156 NA promoter-TSS (NM_021089) promoter-TSS (NM_021089) -324 NM_021089 7554 Hs.590941 NM_021089 HPRD:01919 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 561_WT_peak_6701 chr7 72300318 72300840 + 156 NA intron (NR_024109, intron 1 of 2) intron (NR_024109, intron 1 of 2) 627 NR_024109 155370 Hs.585053 NR_001588 ENSG00000225648 SBDSP1 SBDSP Shwachman-Bodian-Diamond syndrome pseudogene 1 pseudo 561_WT_peak_2443 chr15 41913899 41914211 + 156 NA Intergenic CpG -38555 NM_001164273 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MGA, MAX dimerization protein protein-coding 561_WT_peak_1651 chr12 34175147 34175595 + 156 NA 5' UTR (NM_032834, exon 1 of 3) 5' UTR (NM_032834, exon 1 of 3) 155 NM_032834 84920 Hs.102971 NM_032834 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 561_WT_peak_4400 chr2 191884983 191885541 + 155 NA Intergenic CpG -6286 NM_139266 6772 Hs.642990 NM_007315 HPRD:02777 STAT1 CANDF7|ISGF-3|STAT91 signal transducer and activator of transcription 1, 91kDa protein-coding 561_WT_peak_5937 chr5 137688050 137688355 + 155 NA promoter-TSS (NM_016604) promoter-TSS (NM_016604) -83 NM_016604 51780 Hs.483486 NM_016604 HPRD:11055 KDM3B 5qNCA|C5orf7|JMJD1B|NET22 lysine (K)-specific demethylase 3B protein-coding 561_WT_peak_1320 chr11 62477134 62477468 + 155 NA promoter-TSS (NR_037949) promoter-TSS (NR_037949) -210 NR_037949 26580 Hs.533709 NM_032667 HPRD:05858 BSCL2 GNG3LG|HMN5|PELD|SPG17 Berardinelli-Seip congenital lipodystrophy 2 (seipin) protein-coding 561_WT_peak_5213 chr3 113932477 113933471 + 155 NA Intergenic Intergenic -14720 NM_001282563 1814 Hs.121478 NM_000796 HPRD:00540 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 561_WT_peak_2205 chr14 51342180 51342482 + 155 NA intron (NM_181814, intron 1 of 10) intron (NM_181814, intron 1 of 10) 3453 NM_181814 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 561_WT_peak_6118 chr6 18264548 18264825 + 155 NA 5' UTR (NM_001134709, exon 1 of 10) 5' UTR (NM_001134709, exon 1 of 10) 113 NM_003472 7913 Hs.484813 NM_003472 HPRD:00503 DEK D6S231E DEK proto-oncogene protein-coding 561_WT_peak_3884 chr19 52693262 52693694 + 154 NA intron (NM_014225, intron 1 of 14) CpG 423 NM_014225 5518 Hs.467192 NM_014225 PPP2R1A PP2A-Aalpha|PP2AAALPHA|PR65A protein phosphatase 2, regulatory subunit A, alpha protein-coding 561_WT_peak_423 chr1 143743193 143743755 + 154 NA intron (NR_027468, intron 1 of 4) CpG 1045 NR_104014 388685 Hs.713362 NM_207400 LINC01138 LINC00875 long intergenic non-protein coding RNA 1138 ncRNA 561_WT_peak_3406 chr18 10335 10515 + 154 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -1650 NR_110795 102723376 Hs.606852 NR_110795 LOC102723376 - uncharacterized LOC102723376 ncRNA 561_WT_peak_4092 chr2 62115366 62115789 + 154 NA exon (NM_001256721, exon 1 of 13) exon (NM_001256721, exon 1 of 13) 229 NM_006430 10575 Hs.421509 NM_006430 HPRD:05506 CCT4 CCT-DELTA|Cctd|SRB chaperonin containing TCP1, subunit 4 (delta) protein-coding 561_WT_peak_1959 chr13 25523226 25523401 + 154 NA intron (NR_026730, intron 2 of 4) intron (NR_026730, intron 2 of 4) 19294 NR_026730 646405 Hs.620592 NM_001126062 TPTE2P1 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 pseudo 561_WT_peak_192 chr1 40204591 40204792 + 154 NA intron (NM_203456, intron 1 of 9) CpG 174 NM_203456 10450 Hs.524690 NM_006112 HPRD:03893 PPIE CYP-33|CYP33 peptidylprolyl isomerase E (cyclophilin E) protein-coding 561_WT_peak_6513 chr6 149866503 149866755 + 154 NA intron (NM_139126, intron 1 of 12) intron (NM_139126, intron 1 of 12) 609 NM_139126 85313 Hs.744238 NM_139126 HPRD:07606 PPIL4 HDCME13P peptidylprolyl isomerase (cyclophilin)-like 4 protein-coding 561_WT_peak_3791 chr19 45393439 45393961 + 154 NA promoter-TSS (NM_006114) promoter-TSS (NM_006114) -777 NM_001128917 10452 Hs.655909 NM_006114 HPRD:16274 TOMM40 C19orf1|D19S1177E|PER-EC1|PEREC1|TOM40 translocase of outer mitochondrial membrane 40 homolog (yeast) protein-coding 561_WT_peak_3340 chr17 73257893 73258233 + 154 NA promoter-TSS (NM_014001) promoter-TSS (NM_014001) 314 NM_015971 51081 Hs.71787 NM_015971 HPRD:17601 MRPS7 MRP-S|MRP-S7|RP-S7|RPMS7|S7mt|bMRP27a mitochondrial ribosomal protein S7 protein-coding 561_WT_peak_3956 chr2 9748063 9748386 + 154 NA intron (NM_006826, intron 2 of 5) intron (NM_006826, intron 2 of 5) 22960 NM_006826 10971 Hs.74405 NM_006826 HPRD:00886 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta protein-coding 561_WT_peak_6592 chr7 8215858 8216638 + 154 NA intron (NM_001276478, intron 6 of 13) intron (NM_001276478, intron 6 of 13) 85434 NM_022307 3382 Hs.487561 NM_004968 HPRD:00971 ICA1 ICA69|ICAp69 islet cell autoantigen 1, 69kDa protein-coding 561_WT_peak_704 chr1 206785500 206785937 + 154 NA 5' UTR (NM_006893, exon 1 of 15) 5' UTR (NM_006893, exon 1 of 15) 186 NM_006893 1939 Hs.497581 NM_006893 HPRD:01057 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 561_WT_peak_3578 chr19 3435037 3435437 + 153 NA intron (NM_001245005, intron 6 of 9) CpG-12493 45303 NM_001136503 284422 Hs.130714 NM_001136503 ENSG00000095932 SMIM24 C19orf77 small integral membrane protein 24 protein-coding 561_WT_peak_6388 chr6 88411628 88412053 + 153 NA 5' UTR (NM_018064, exon 1 of 5) 5' UTR (NM_018064, exon 1 of 5) 145 NM_018064 55122 Hs.485915 NM_018064 HPRD:12864 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 561_WT_peak_3022 chr17 7591448 7591697 + 153 NA promoter-TSS (NM_001143992) promoter-TSS (NM_001143992) -95 NM_018081 55135 Hs.408312 NM_018081 HPRD:07670 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing, antisense to TP53 protein-coding 561_WT_peak_1874 chr12 117628061 117628268 + 153 NA exon (NM_015002, exon 1 of 12) exon (NM_015002, exon 1 of 12) 136 NM_033624 23014 Hs.740376 NM_015002 HPRD:09948 FBXO21 FBX21 F-box protein 21 protein-coding 561_WT_peak_519 chr1 150601754 150602072 + 153 NA promoter-TSS (NM_207045) promoter-TSS (NM_207045) 185 NM_207044 2029 Hs.632456 NM_004436 HPRD:11927 ENSA ARPP-19e endosulfine alpha protein-coding 561_WT_peak_1982 chr13 31318502 31318757 + 153 NA intron (NM_001204406, intron 3 of 5) intron (NM_001204406, intron 3 of 5) 8984 NM_001629 241 Hs.507658 NM_001629 HPRD:04742 ALOX5AP FLAP arachidonate 5-lipoxygenase-activating protein protein-coding 561_WT_peak_1674 chr12 48206727 48207319 + 153 NA intron (NM_001098416, intron 1 of 24) CpG 6740 NM_001098416 51564 Hs.200063 NM_015401 HPRD:09133 HDAC7 HD7A|HDAC7A histone deacetylase 7 protein-coding 561_WT_peak_1197 chr11 8008537 8009144 + 153 NA promoter-TSS (NM_003754) promoter-TSS (NM_003754) -27 NM_003754 8665 Hs.516023 NM_003754 HPRD:04887 EIF3F EIF3S5|eIF3-p47 eukaryotic translation initiation factor 3, subunit F protein-coding 561_WT_peak_6569 chr7 1199993 1200269 + 153 NA promoter-TSS (NM_182491) promoter-TSS (NM_182491) 121 NR_110067 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 561_WT_peak_898 chr10 17068640 17069097 + 153 NA intron (NM_001081, intron 27 of 66) intron (NM_001081, intron 27 of 66) 102948 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 561_WT_peak_5245 chr3 128444639 128445002 + 153 NA promoter-TSS (NM_004637) promoter-TSS (NM_004637) -159 NM_004637 7879 Hs.744853 NM_004637 HPRD:03805 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 561_WT_peak_3714 chr19 31705008 31705302 + 153 NA Intergenic Intergenic 135035 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 561_WT_peak_7108 chr8 109455711 109456282 + 153 NA intron (NM_014673, intron 1 of 10) CpG 143 NM_014673 9694 Hs.654351 NM_014673 HPRD:09657 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 561_WT_peak_1362 chr11 65270419 65270775 + 152 NA non-coding (NR_002819, exon 1 of 1) non-coding (NR_002819, exon 1 of 1) 5364 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 561_WT_peak_6672 chr7 55376625 55377044 + 152 NA Intergenic Intergenic -53506 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 561_WT_peak_1579 chr12 9177532 9177979 + 152 NA Intergenic L2|LINE|L2 35534 NM_005810 10219 Hs.558446 NM_005810 HPRD:16076 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin-like receptor subfamily G, member 1 protein-coding 561_WT_peak_3482 chr18 32869975 32870423 + 152 NA promoter-TSS (NR_024566) promoter-TSS (NR_024566) 10 NM_001288711 100101467 Hs.619840 NM_001112734 ENSG00000186814 ZSCAN30 ZNF-WYM|ZNF397OS|ZNF917 zinc finger and SCAN domain containing 30 protein-coding 561_WT_peak_5803 chr5 71146748 71146931 + 152 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA 131849 NM_004291 9607 Hs.1707 NM_004291 HPRD:04006 CARTPT CART CART prepropeptide protein-coding 561_WT_peak_3795 chr19 45681235 45681471 + 152 NA promoter-TSS (NM_212550) promoter-TSS (NM_212550) 148 NM_001270891 79090 Hs.466929 NM_024108 HPRD:14503 TRAPPC6A TRS33 trafficking protein particle complex 6A protein-coding 561_WT_peak_4447 chr2 204571127 204571415 + 152 NA promoter-TSS (NM_006139) promoter-TSS (NM_006139) 73 NM_001243077 940 Hs.443123 NM_006139 HPRD:01727 CD28 Tp44 CD28 molecule protein-coding 561_WT_peak_4494 chr2 232526644 232527432 + 152 NA Intergenic CpG -46197 NM_002823 5757 Hs.459927 NM_002823 HPRD:01778 PTMA TMSA prothymosin, alpha protein-coding 561_WT_peak_1923 chr12 127650479 127650651 + 152 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -105623 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 561_WT_peak_5968 chr5 141531861 141532011 + 152 NA 3' UTR (NM_030571, exon 8 of 8) 3' UTR (NM_030571, exon 8 of 8) 43612 NM_030571 80762 Hs.9788 NM_030571 HPRD:14816 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 561_WT_peak_4938 chr22 41681796 41682532 + 152 NA promoter-TSS (NM_002883) promoter-TSS (NM_002883) 91 NM_002883 5905 Hs.183800 NM_002883 HPRD:03839 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 561_WT_peak_768 chr1 228645288 228645554 + 152 NA promoter-TSS (NM_175055) promoter-TSS (NM_175055) 139 NM_033445 92815 Hs.26331 NM_033445 HPRD:13660 HIST3H2A - histone cluster 3, H2a protein-coding 561_WT_peak_5574 chr4 107237734 107237974 + 151 NA promoter-TSS (NM_001163437) promoter-TSS (NM_001163437) 7 NM_001163436 93627 Hs.151498 NM_033115 HPRD:17514 TBCK TBCKL TBC1 domain containing kinase protein-coding 561_WT_peak_3229 chr17 46618951 46619223 + 151 NA TTS (NM_002145) TTS (NM_002145) -2626 NR_102279 100874362 Hs.171806 NR_102279 ENSG00000230148 HOXB-AS1 - HOXB cluster antisense RNA 1 ncRNA 561_WT_peak_2837 chr16 48644205 48644636 + 151 NA promoter-TSS (NM_153029) promoter-TSS (NM_153029) -300 NM_153029 9683 Hs.511839 NM_153029 HPRD:08109 N4BP1 - NEDD4 binding protein 1 protein-coding 561_WT_peak_6779 chr7 100167693 100168121 + 151 NA Intergenic CpG 3363 NM_001168682 100316904 Hs.633863 NM_001168682 ENSG00000205307 SAP25 - Sin3A-associated protein, 25kDa protein-coding 561_WT_peak_3984 chr2 25194219 25194516 + 151 NA promoter-TSS (NR_034113) promoter-TSS (NR_034113) 596 NM_016544 51277 Hs.434993 NM_016544 HPRD:15221 DNAJC27 RBJ|RabJS DnaJ (Hsp40) homolog, subfamily C, member 27 protein-coding 561_WT_peak_4784 chr21 36089711 36090007 + 151 NA 3' UTR (NM_053277, exon 6 of 6) 3' UTR (NM_053277, exon 6 of 6) 19620 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 561_WT_peak_4624 chr20 35724170 35724654 + 151 NA promoter-TSS (NM_002895) promoter-TSS (NM_002895) -9 NM_183404 5933 Hs.207745 NM_002895 HPRD:00312 RBL1 CP107|PRB1|p107 retinoblastoma-like 1 protein-coding 561_WT_peak_619 chr1 172502149 172502766 + 151 NA exon (NM_016227, exon 2 of 23) exon (NM_016227, exon 2 of 23) 199 NM_001282750 51430 Hs.204559 NM_014283 HPRD:12732 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 561_WT_peak_2931 chr16 85063022 85063297 + 151 NA intron (NM_001286566, intron 1 of 11) intron (NM_001286566, intron 1 of 11) 1802 NM_001286566 9764 Hs.301658 NM_014732 HPRD:17192 KIAA0513 - KIAA0513 protein-coding 561_WT_peak_4983 chr3 4344882 4345190 + 151 NA promoter-TSS (NM_001276325) promoter-TSS (NM_001276325) 48 NM_001243723 6419 Hs.475300 NM_006515 HPRD:10225 SETMAR HsMar1|METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 561_WT_peak_3890 chr19 54618637 54619188 + 151 NA 5' UTR (NM_013342, exon 1 of 6) 5' UTR (NM_013342, exon 1 of 6) 122 NM_015629 26121 Hs.515598 NM_015629 HPRD:05917 PRPF31 NY-BR-99|PRP31|RP11|SNRNP61 pre-mRNA processing factor 31 protein-coding 561_WT_peak_5563 chr4 102448448 102448641 + 151 NA Intergenic L2|LINE|L2 179610 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 561_WT_peak_6754 chr7 92778166 92778422 + 151 NA promoter-TSS (NM_152703) promoter-TSS (NM_152703) -614 NM_152703 219285 Hs.489118 NM_152703 HPRD:10798 SAMD9L C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9-like protein-coding 561_WT_peak_3647 chr19 13957201 13958637 + 151 NA Intergenic Intergenic -10446 NR_029495 407010 NR_029495 miRBase:MI0000079 MIR23A MIRN23A|hsa-mir-23a|miRNA23A microRNA 23a ncRNA 561_WT_peak_6616 chr7 23571044 23571489 + 151 NA intron (NM_001282758, intron 1 of 8) CpG-24104 394 NM_001282758 29896 Hs.445652 NM_013293 HPRD:04096 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog (Drosophila) protein-coding 561_WT_peak_5744 chr5 52856391 52856743 + 151 NA exon (NM_002495, exon 1 of 5) exon (NM_002495, exon 1 of 5) 102 NM_002495 4724 Hs.528222 NM_002495 HPRD:04073 NDUFS4 AQDQ|CI-18 NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) protein-coding 561_WT_peak_6499 chr6 143771392 143772006 + 151 NA promoter-TSS (NM_003630) promoter-TSS (NM_003630) 142 NM_182503 134637 Hs.709561 NM_182503 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase, tRNA-specific 2 protein-coding 561_WT_peak_5234 chr3 123304106 123304764 + 151 NA promoter-TSS (NM_198402) promoter-TSS (NM_198402) 75 NR_121654 100506826 Hs.556600 NR_038266 ENSG00000239523 MYLK-AS1 - MYLK antisense RNA 1 ncRNA 561_WT_peak_5159 chr3 75690256 75690541 + 150 NA Intergenic Intergenic 10484 NR_031714 100302212 NR_031714 miRBase:MI0006657 MIR1324 MIRN1324|hsa-mir-1324 microRNA 1324 ncRNA 561_WT_peak_489 chr1 149577374 149577786 + 150 NA intron (NR_111955, intron 1 of 1) intron (NR_111955, intron 1 of 1) 1113 NR_024511 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 561_WT_peak_2110 chr13 115046617 115047028 + 150 NA promoter-TSS (NM_080687) promoter-TSS (NM_080687) -237 NM_080687 65110 Hs.533855 NM_023011 HPRD:09274 UPF3A HUPF3A|RENT3A|UPF3 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding 561_WT_peak_3202 chr17 43138520 43138901 + 150 NA promoter-TSS (NM_021079) promoter-TSS (NM_021079) 30 NM_021079 4836 Hs.532790 NM_021079 HPRD:01187 NMT1 NMT N-myristoyltransferase 1 protein-coding 561_WT_peak_1413 chr11 74660206 74660628 + 150 NA promoter-TSS (NM_001270381) promoter-TSS (NM_001270381) 125 NM_014752 9789 Hs.282700 NM_014752 HPRD:15435 SPCS2 - signal peptidase complex subunit 2 homolog (S. cerevisiae) protein-coding 561_WT_peak_7552 chrX 53254121 53254400 + 150 NA 5' UTR (NM_001146702, exon 1 of 24) 5' UTR (NM_001146702, exon 1 of 24) 344 NM_001282622 8242 Hs.631768 NM_004187 HPRD:02442 KDM5C DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169 lysine (K)-specific demethylase 5C protein-coding 561_WT_peak_5017 chr3 14692793 14693145 + 150 NA promoter-TSS (NM_016474) promoter-TSS (NM_016474) -284 NM_016474 51244 Hs.517820 NM_016474 HPRD:12820 CCDC174 C3orf19 coiled-coil domain containing 174 protein-coding 561_WT_peak_4941 chr22 41865056 41865445 + 150 NA promoter-TSS (NM_032758) promoter-TSS (NM_032758) 121 NM_001098 50 Hs.643610 NM_001098 HPRD:00012 ACO2 ACONM|ICRD aconitase 2, mitochondrial protein-coding 561_WT_peak_4940 chr22 41842789 41843146 + 150 NA promoter-TSS (NM_016272) promoter-TSS (NM_016272) 60 NM_016272 10766 Hs.474978 NM_016272 HPRD:09583 TOB2 TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 561_WT_peak_4482 chr2 224821936 224822346 + 150 NA promoter-TSS (NM_022915) promoter-TSS (NM_022915) 20 NM_022915 65080 Hs.203559 NM_022915 HPRD:14763 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 561_WT_peak_2116 chr14 21149642 21149996 + 150 NA Intergenic Intergenic -2517 NM_001145 283 Hs.283749 NM_001145 HPRD:00105 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin, ribonuclease, RNase A family, 5 protein-coding 561_WT_peak_3577 chr19 3185370 3185935 + 150 NA promoter-TSS (NM_020170) promoter-TSS (NM_020170) -223 NM_020170 56926 Hs.657032 NM_020170 HPRD:07126 NCLN NET59 nicalin protein-coding 561_WT_peak_7281 chr9 69065077 69065606 + 150 NA Intergenic CpG 82513 NR_002836 595135 Hs.571593 NR_002836 ENSG00000227558 PGM5P2 - phosphoglucomutase 5 pseudogene 2 pseudo 561_WT_peak_108 chr1 24969774 24970279 + 150 NA intron (NM_005839, intron 1 of 16) CpG 432 NM_005839 10250 Hs.18192 NM_005839 HPRD:10441 SRRM1 160-KD|POP101|SRM160 serine/arginine repetitive matrix 1 protein-coding 561_WT_peak_6391 chr6 89790284 89790758 + 150 NA promoter-TSS (NM_006813) promoter-TSS (NM_006813) 92 NM_006813 10957 Hs.75969 NM_006813 HPRD:08412 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline-rich nuclear receptor coactivator 1 protein-coding 561_WT_peak_3048 chr17 15862543 15862856 + 150 NA intron (NM_000676, intron 1 of 1) L1MC4|LINE|L1 14468 NM_000676 136 Hs.167046 NM_000676 HPRD:15971 ADORA2B ADORA2 adenosine A2b receptor protein-coding 561_WT_peak_5773 chr5 64859042 64859438 + 150 NA promoter-TSS (NM_022145) promoter-TSS (NM_022145) 174 NM_001278929 23398 Hs.121432 NM_015342 HPRD:11063 PPWD1 - peptidylprolyl isomerase domain and WD repeat containing 1 protein-coding 561_WT_peak_2487 chr15 52860864 52861388 + 150 NA promoter-TSS (NM_006628) promoter-TSS (NM_006628) 87 NM_006628 10776 Hs.512908 NM_006628 HPRD:09264 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP-regulated phosphoprotein, 19kDa protein-coding 561_WT_peak_1902 chr12 122326672 122327143 + 150 NA promoter-TSS (NM_001171993) promoter-TSS (NM_001171993) 270 NM_002813 5715 Hs.131151 NM_002813 HPRD:04394 PSMD9 Rpn4|p27 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 protein-coding 561_WT_peak_5241 chr3 127391112 127391622 + 150 NA promoter-TSS (NM_172027) promoter-TSS (NM_172027) -414 NM_032548 80325 Hs.107812 NM_032548 HPRD:10513 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP ankyrin repeat and BTB (POZ) domain containing 1 protein-coding 561_WT_peak_6296 chr6 33538598 33539139 + 150 NA Intergenic Intergenic 9202 NM_001188 578 Hs.485139 NM_001188 HPRD:02744 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2-antagonist/killer 1 protein-coding 561_WT_peak_4228 chr2 98329927 98330264 + 150 NA promoter-TSS (NM_001079) promoter-TSS (NM_001079) 64 NM_001079 7535 Hs.234569 NM_001079 HPRD:01495 ZAP70 SRK|STCD|STD|TZK|ZAP-70 zeta-chain (TCR) associated protein kinase 70kDa protein-coding 561_WT_peak_1685 chr12 49582144 49582353 + 150 NA 5' UTR (NM_001270399, exon 1 of 4) 5' UTR (NM_001270399, exon 1 of 4) 859 NM_001270399 7846 Hs.654422 NM_006009 HPRD:03959 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin, alpha 1a protein-coding 561_WT_peak_6608 chr7 21467634 21467923 + 150 NA promoter-TSS (NM_003112) promoter-TSS (NM_003112) 89 NM_003112 6671 Hs.88013 NM_003112 HPRD:02764 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 561_WT_peak_6545 chr6 159483596 159483867 + 149 NA Intergenic Intergenic -17547 NM_054114 117289 Hs.529984 NM_054114 HPRD:18143 TAGAP ARHGAP47|IDDM21|TAGAP1 T-cell activation RhoGTPase activating protein protein-coding 561_WT_peak_6473 chr6 131949243 131949610 + 149 NA promoter-TSS (NM_001270521) promoter-TSS (NM_001270521) -47 NM_015979 9439 Hs.29679 NM_004830 HPRD:05436 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 561_WT_peak_379 chr1 111758436 111759034 + 149 NA Intergenic Intergenic -11546 NM_004000 1117 Hs.514840 NM_004000 HPRD:03315 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3-like 2 protein-coding 561_WT_peak_7198 chr9 272453 272716 + 149 NA promoter-TSS (NM_001190458) promoter-TSS (NM_001190458) -464 NM_001190458 81704 Hs.132599 NM_203447 HPRD:10920 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 561_WT_peak_502 chr1 149870998 149871320 + 149 NA promoter-TSS (NM_016074) promoter-TSS (NM_016074) 4 NM_016074 51027 Hs.13880 NM_016074 HPRD:13036 BOLA1 - bolA family member 1 protein-coding 561_WT_peak_6999 chr8 42128807 42129439 + 149 NA intron (NM_001190720, intron 1 of 20) CpG 303 NR_033819 3551 Hs.597664 NM_001556 HPRD:04462 IKBKB IKK-beta|IKK2|IKKB|IMD15|NFKBIKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta protein-coding 561_WT_peak_974 chr10 43048233 43048524 + 149 NA promoter-TSS (NR_026777) promoter-TSS (NR_026777) -60 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 561_WT_peak_5291 chr3 151986336 151987289 + 149 NA non-coding (NR_027038, exon 2 of 2) non-coding (NR_027038, exon 2 of 2) 603 NR_027038 401093 Hs.725347 NR_027037 ENSG00000229619 MBNL1-AS1 - MBNL1 antisense RNA 1 ncRNA 561_WT_peak_5571 chr4 103997281 103997926 + 149 NA 5' UTR (NM_178833, exon 1 of 12) 5' UTR (NM_178833, exon 1 of 12) 327 NM_178833 133308 Hs.546482 NM_178833 HPRD:14051 SLC9B2 NHA2|NHE10|NHEDC2 solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2 protein-coding 561_WT_peak_1480 chr11 110045000 110045198 + 149 NA TTS (NM_001260493) TTS (NM_001260493) 81012 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 561_WT_peak_2475 chr15 49447380 49448084 + 149 NA promoter-TSS (NR_036507) promoter-TSS (NR_036507) 122 NM_001143887 9318 Hs.369614 NM_004236 HPRD:05146 COPS2 ALIEN|CSN2|SGN2|TRIP15 COP9 signalosome subunit 2 protein-coding 561_WT_peak_6753 chr7 92533704 92533991 + 149 NA intron (NR_110087, intron 2 of 2) AmnSINE1|SINE|Deu -67906 NM_001145306 1021 Hs.119882 NM_001259 HPRD:04533 CDK6 PLSTIRE cyclin-dependent kinase 6 protein-coding 561_WT_peak_7091 chr8 101963662 101964445 + 149 NA promoter-TSS (NM_001135701) promoter-TSS (NM_001135701) 304 NM_145690 7534 Hs.492407 NM_003406 HPRD:03183 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 561_WT_peak_440 chr1 145395450 145395694 + 149 NA intron (NM_001039703, intron 68 of 85) tRNA-Lys-AAG|tRNA|tRNA -17619 NM_213653 148738 Hs.632436 NM_145277 HPRD:10521 HFE2 HFE2A|HJV|JH|RGMC hemochromatosis type 2 (juvenile) protein-coding 561_WT_peak_6716 chr7 74267401 74267634 + 149 NA intron (NM_173537, intron 1 of 15).2 CpG 355 NM_173537 84163 Hs.647017 NM_173537 HPRD:16402 GTF2IRD2 FP630|GTF2IRD2 alpha|GTF2IRD2A GTF2I repeat domain containing 2 protein-coding 561_WT_peak_4527 chr2 242255450 242255946 + 149 NA promoter-TSS (NM_005336) promoter-TSS (NM_005336) 422 NM_001008492 4735 Hs.721234 NM_004404 HPRD:03297 SEPT2 DIFF6|NEDD-5|NEDD5|Pnutl3|hNedd5 septin 2 protein-coding 561_WT_peak_7198-2 chr9 272778 273450 + 149 NA promoter-TSS (NM_001190458) promoter-TSS (NM_001190458) 66 NM_001193536 81704 Hs.132599 NM_203447 HPRD:10920 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 561_WT_peak_2419 chr15 34393788 34394208 + 149 NA promoter-TSS (NM_020154) promoter-TSS (NM_020154) 55 NM_020154 56851 Hs.160565 NM_020154 HPRD:12670 EMC7 C11orf3|C15orf24|ORF1-FL1 ER membrane protein complex subunit 7 protein-coding 561_WT_peak_4000 chr2 27593184 27593838 + 149 NA promoter-TSS (NM_172195) promoter-TSS (NM_172195) 148 NR_049784 9784 Hs.278569 NM_014748 HPRD:05812 SNX17 - sorting nexin 17 protein-coding 561_WT_peak_2988 chr17 4166997 4167405 + 149 NA promoter-TSS (NM_016376) promoter-TSS (NM_016376) -59 NM_001257999 51479 Hs.696087 NM_016376 HPRD:09717 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 561_WT_peak_3011 chr17 7155530 7155964 + 149 NA promoter-TSS (NM_001143775) promoter-TSS (NM_001143775) 227 NM_015362 23587 Hs.417029 NM_015362 HPRD:08520 ELP5 C17orf81|DERP6|MST071|MSTP071 elongator acetyltransferase complex subunit 5 protein-coding 561_WT_peak_2344 chr14 94421652 94421913 + 149 NA intron (NM_016150, intron 1 of 7) intron (NM_016150, intron 1 of 7) 1985 NM_016150 51676 Hs.510327 NM_016150 HPRD:05768 ASB2 ASB-2 ankyrin repeat and SOCS box containing 2 protein-coding 561_WT_peak_4150 chr2 74648452 74648792 + 149 NA promoter-TSS (NM_032118) promoter-TSS (NM_032118) -263 NM_032118 84058 Hs.643480 NM_032118 HPRD:08577 WDR54 - WD repeat domain 54 protein-coding 561_WT_peak_728 chr1 213188416 213188727 + 149 NA 5' UTR (NM_001300755, exon 1 of 9) 5' UTR (NM_001300755, exon 1 of 9) 280 NM_001300755 90806 Hs.157078 NM_144567 HPRD:14279 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 (Drosophila) protein-coding 561_WT_peak_1456 chr11 94800267 94800650 + 149 NA exon (NM_032102, exon 1 of 1) exon (NM_032102, exon 1 of 1) 417 NR_103726 10929 Hs.476680 NM_032102 SRSF8 DSM-1|SFRS2B|SRP46 serine/arginine-rich splicing factor 8 protein-coding 561_WT_peak_2980 chr17 2303759 2304545 + 149 NA 5' UTR (NM_020310, exon 1 of 6) 5' UTR (NM_020310, exon 1 of 6) 106 NM_020310 4335 Hs.626579 NM_020310 HPRD:04331 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 561_WT_peak_4668 chr20 47895082 47895714 + 149 NA promoter-TSS (NR_002433) promoter-TSS (NR_002433) -84 NR_002433 26765 NR_002433 ENSG00000209042 SNORD12C E2|E2-1|E3|RNU106|SNORD106|U106 small nucleolar RNA, C/D box 12C snoRNA 561_WT_peak_2122 chr14 21924488 21924709 + 149 NA Intergenic Intergenic -19141 NM_020920 57680 Hs.530698 NM_020920 HPRD:16712 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 561_WT_peak_682 chr1 203258721 203259208 + 149 NA Intergenic Intergenic 2136 NR_117098 100506775 Hs.443859 NR_117097 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 561_WT_peak_5742 chr5 52337183 52337469 + 149 NA intron (NR_073106, intron 2 of 29) MIR|SINE|MIR 52170 NR_073106 3673 Hs.482077 NM_002203 HPRD:01893 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) protein-coding 561_WT_peak_3910 chr19 57702816 57703080 + 149 NA promoter-TSS (NM_003417) promoter-TSS (NM_003417) 80 NM_003417 9422 Hs.515634 NM_003417 ZNF264 - zinc finger protein 264 protein-coding 561_WT_peak_3342 chr17 73285526 73286398 + 148 NA promoter-TSS (NM_021734) promoter-TSS (NM_021734) -432 NM_001126121 60386 Hs.514470 NM_021734 HPRD:08405 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 protein-coding 561_WT_peak_7580 chrX 73163946 73164501 + 148 NA promoter-TSS (NR_024582) promoter-TSS (NR_024582) 64 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator (non-protein coding) ncRNA 561_WT_peak_2593 chr15 89183177 89183661 + 148 NA intron (NM_002201, intron 2 of 3) intron (NM_002201, intron 2 of 3) 1380 NM_002201 3669 Hs.459265 NM_002201 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20kDa protein-coding 561_WT_peak_7501 chrX 10087588 10087866 + 148 NA intron (NM_015691, intron 11 of 22) intron (NM_015691, intron 11 of 22) -37258 NM_001256944 1183 Hs.495674 NM_001830 HPRD:02362 CLCN4 CLC4|ClC-4|ClC-4A chloride channel, voltage-sensitive 4 protein-coding 561_WT_peak_5549 chr4 90215641 90216014 + 148 NA intron (NM_198281, intron 1 of 1) intron (NM_198281, intron 1 of 1) 13334 NM_198281 285513 Hs.605082 NM_198281 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 561_WT_peak_2156 chr14 25162211 25162469 + 148 NA Intergenic Intergenic -58908 NM_004131 3002 Hs.1051 NM_004131 HPRD:00476 GZMB CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) protein-coding 561_WT_peak_5095 chr3 47866526 47866771 + 148 NA intron (NM_014966, intron 5 of 22) CpG 22249 NM_014966 22907 Hs.517948 NM_014966 HPRD:13142 DHX30 DDX30|RETCOR DEAH (Asp-Glu-Ala-His) box helicase 30 protein-coding 561_WT_peak_1114 chr10 101380462 101381050 + 148 NA promoter-TSS (NM_031212) promoter-TSS (NM_031212) -535 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L solute carrier family 25 (mitochondrial iron transporter), member 28 protein-coding 561_WT_peak_1836 chr12 105081678 105082077 + 147 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 96466 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 561_WT_peak_2484 chr15 52305306 52305591 + 147 NA Intergenic L3|LINE|CR1 -5963 NM_002748 5597 Hs.411847 NM_002748 HPRD:04213 MAPK6 ERK3|HsT17250|PRKM6|p97MAPK mitogen-activated protein kinase 6 protein-coding 561_WT_peak_4564 chr20 10415345 10415971 + 147 NA promoter-TSS (NR_072977) promoter-TSS (NR_072977) -293 NM_001009608 128710 Hs.668782 NM_001009608 HPRD:12516 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 561_WT_peak_4267 chr2 113403501 113403778 + 147 NA 5' UTR (NM_005415, exon 1 of 11) 5' UTR (NM_005415, exon 1 of 11) 205 NM_005415 6574 Hs.187946 NM_005415 HPRD:08846 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 (phosphate transporter), member 1 protein-coding 561_WT_peak_6715 chr7 74071562 74071976 + 147 NA promoter-TSS (NM_001163636) promoter-TSS (NM_001163636) -222 NM_032999 2969 Hs.647041 NM_001518 HPRD:03399 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 561_WT_peak_4576 chr20 18547776 18548107 + 147 NA promoter-TSS (NR_015432) promoter-TSS (NR_015432) -132 NR_015432 388789 Hs.349092 NR_015432 ENSG00000232388 LINC00493 - long intergenic non-protein coding RNA 493 ncRNA 561_WT_peak_2300 chr14 76008687 76009126 + 147 NA intron (NM_006399, intron 2 of 2) intron (NM_006399, intron 2 of 2) 20122 NM_006399 10538 Hs.509964 NM_006399 HPRD:09820 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper transcription factor, ATF-like protein-coding 561_WT_peak_6287 chr6 32812036 32812416 + 147 NA promoter-TSS (NM_148919).2 promoter-TSS (NM_148919).2 363 NR_037173 100507463 Hs.731555 NR_037173 ENSG00000204261 PSMB8-AS1 TAP1-AS1|TAPSAR1 PSMB8 antisense RNA 1 (head to head) ncRNA 561_WT_peak_4089 chr2 61991241 61991504 + 147 NA Intergenic CpG 89906 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161, member A protein-coding 561_WT_peak_2738 chr16 23568535 23569189 + 147 NA promoter-TSS (NM_001083614) promoter-TSS (NM_001083614) 0 NM_019116 56061 Hs.3459 NM_019116 HPRD:15606 UBFD1 UBPH ubiquitin family domain containing 1 protein-coding 561_WT_peak_3840 chr19 49298608 49298888 + 147 NA intron (NM_001284325, intron 11 of 11) intron (NM_001284325, intron 11 of 11) 15572 NM_001190 587 Hs.512670 NM_001190 HPRD:00217 BCAT2 BCAM|BCATM|BCT2|PP18 branched chain amino-acid transaminase 2, mitochondrial protein-coding 561_WT_peak_6387 chr6 87864712 87865795 + 147 NA promoter-TSS (NM_015021) promoter-TSS (NM_015021) -16 NM_015021 23036 Hs.485892 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 561_WT_peak_7388 chr9 112681148 112681501 + 147 NA intron (NM_001037293, intron 4 of 6) L1M3f|LINE|L1 -129554 NM_001004065 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 561_WT_peak_2246 chr14 61943347 61943810 + 146 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 93334 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 561_WT_peak_2834 chr16 46864870 46865098 + 146 NA promoter-TSS (NM_001001436) promoter-TSS (NM_001001436) 90 NM_001001436 388272 Hs.406551 NM_001001436 HPRD:17370 C16orf87 - chromosome 16 open reading frame 87 protein-coding 561_WT_peak_4759 chr21 30374970 30375380 + 145 NA Intergenic CpG -9898 NM_015565 26046 Hs.288773 NM_015565 HPRD:10327 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 561_WT_peak_3678 chr19 17958599 17958783 + 145 NA intron (NM_000215, intron 1 of 23) CpG 150 NM_000215 3718 Hs.515247 NM_000215 HPRD:02547 JAK3 JAK-3|JAK3_HUMAN|JAKL|L-JAK|LJAK Janus kinase 3 protein-coding 561_WT_peak_800 chr1 234744086 234744400 + 145 NA exon (NM_182972, exon 1 of 2) exon (NM_182972, exon 1 of 2) 1028 NM_182972 359948 Hs.350268 NM_182972 HPRD:17160 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 561_WT_peak_3707 chr19 24269976 24270326 + 145 NA intron (NM_001278678, intron 1 of 1) intron (NM_001278678, intron 1 of 1) 189 NM_001278678 9534 Hs.434406 NM_004876 HPRD:05304 ZNF254 BMZF-5|HD-ZNF1|ZNF539|ZNF91L zinc finger protein 254 protein-coding 561_WT_peak_5428 chr4 25161384 25162075 + 145 NA promoter-TSS (NR_037934) promoter-TSS (NR_037934) 475 NM_016955 51091 Hs.253305 NM_016955 HPRD:11561 SEPSECS LP|PCH2D|SLA|SLA/LP Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein-coding 561_WT_peak_4787 chr21 36420941 36421606 + 145 NA intron (NM_001754, intron 1 of 8) intron (NM_001754, intron 1 of 8) 322 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 561_WT_peak_38 chr1 6761681 6761925 + 145 NA exon (NM_018198, exon 1 of 16) exon (NM_018198, exon 1 of 16) 163 NM_018198 55735 Hs.462640 NM_018198 HPRD:07112 DNAJC11 dJ126A5.1 DnaJ (Hsp40) homolog, subfamily C, member 11 protein-coding 561_WT_peak_4188 chr2 88354783 88355418 + 145 NA intron (NM_016618, intron 1 of 3) CpG 148 NM_016618 51315 Hs.469254 NM_016618 HPRD:11269 KRCC1 CHBP2 lysine-rich coiled-coil 1 protein-coding 561_WT_peak_6557 chr6 170403424 170403998 + 145 NA Intergenic Intergenic 167946 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 561_WT_peak_955 chr10 38383047 38383409 + 145 NA promoter-TSS (NM_001007094) promoter-TSS (NM_001007094) -36 NM_001178101 7587 Hs.292575 NM_003421 HPRD:18508 ZNF37A KOX21|ZNF37 zinc finger protein 37A protein-coding 561_WT_peak_3560 chr19 1438268 1438825 + 145 NA intron (NM_001018, intron 1 of 3) CpG 183 NM_001018 6209 Hs.406683 NM_001018 HPRD:01613 RPS15 RIG|S15 ribosomal protein S15 protein-coding 561_WT_peak_2261 chr14 65754515 65754861 + 145 NA Intergenic Intergenic 47213 NR_039857 100616176 NR_039857 miRBase:MI0017341 MIR4708 - microRNA 4708 ncRNA 561_WT_peak_1608 chr12 12849310 12849614 + 145 NA promoter-TSS (NM_006143) promoter-TSS (NM_006143) -341 NM_006143 2842 Hs.657862 NM_006143 HPRD:04236 GPR19 - G protein-coupled receptor 19 protein-coding 561_WT_peak_4468 chr2 217363567 217363828 + 145 NA intron (NM_000998, intron 1 of 3) CpG 177 NM_000998 6168 Hs.433701 NM_000998 RPL37A L37A ribosomal protein L37a protein-coding 561_WT_peak_2310 chr14 78227072 78227465 + 145 NA promoter-TSS (NM_001173978) promoter-TSS (NM_001173978) 95 NM_001173978 283579 Hs.375834 NM_174943 HPRD:08080 C14orf178 - chromosome 14 open reading frame 178 protein-coding 561_WT_peak_1677 chr12 48592171 48592493 + 145 NA Intergenic CpG 4743 NM_001004134 121275 Hs.446790 NM_001004134 HPRD:11812 OR10AD1 OR10AD1P|OR12-1 olfactory receptor, family 10, subfamily AD, member 1 protein-coding 561_WT_peak_5315 chr3 169490820 169491500 + 145 NA promoter-TSS (NM_001185119) promoter-TSS (NM_001185119) 307 NM_001185118 55892 Hs.507025 NM_018657 HPRD:06920 MYNN OSZF|ZBTB31|ZNF902 myoneurin protein-coding 561_WT_peak_3039 chr17 8125843 8126348 + 145 NA non-coding (NR_026951, exon 2 of 3) non-coding (NR_026951, exon 2 of 3) 1266 NR_026951 284029 Hs.121692 NM_173621 HPRD:08755 LINC00324 C17orf44|NCRNA00324 long intergenic non-protein coding RNA 324 ncRNA 561_WT_peak_1826 chr12 100594495 100594931 + 144 NA non-coding (NR_048568, exon 1 of 11) non-coding (NR_048568, exon 1 of 11) 158 NR_048569 64431 Hs.115088 NM_022496 HPRD:12421 ACTR6 ARP6|HSPC281|MSTP136|hARP6|hARPX ARP6 actin-related protein 6 homolog (yeast) protein-coding 561_WT_peak_7003 chr8 42948664 42949059 + 144 NA intron (NM_001277971, intron 1 of 3) CpG 212 NM_032237 84197 Hs.491646 NM_032237 HPRD:08668 POMK MDDGA12|SGK196 protein-O-mannose kinase protein-coding 561_WT_peak_1589-2 chr12 9917812 9918039 + 144 NA Intergenic Intergenic -4428 NM_001781 969 Hs.208854 NM_001781 HPRD:00119 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 561_WT_peak_1366 chr11 65487943 65488386 + 144 NA exon (NM_032193, exon 1 of 4) exon (NM_032193, exon 1 of 4) 245 NM_032193 84153 Hs.718438 NM_032193 HPRD:16531 RNASEH2C AGS3|AYP1 ribonuclease H2, subunit C protein-coding 561_WT_peak_3389 chr17 79791261 79791599 + 144 NA promoter-TSS (NM_001093767) promoter-TSS (NM_001093767) -260 NM_207368 348262 Hs.514632 NM_207368 HPRD:14179 FAM195B - family with sequence similarity 195, member B protein-coding 561_WT_peak_3116 chr17 30771306 30771891 + 144 NA exon (NM_002815, exon 1 of 14) exon (NM_002815, exon 1 of 14) 117 NM_001270482 5717 Hs.443379 NM_002815 HPRD:05119 PSMD11 Rpn6|S9|p44.5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 protein-coding 561_WT_peak_4014 chr2 30388000 30388287 + 144 NA Intergenic Intergenic 18393 NM_016061 51646 Hs.515890 NM_016061 HPRD:18312 YPEL5 - yippee-like 5 (Drosophila) protein-coding 561_WT_peak_1589 chr12 9917412 9917768 + 144 NA Intergenic Intergenic -4093 NM_001781 969 Hs.208854 NM_001781 HPRD:00119 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 561_WT_peak_4063 chr2 48133147 48133590 + 144 NA promoter-TSS (NM_001190274) promoter-TSS (NM_001190274) -436 NM_001190274 80204 Hs.352677 NM_012167 HPRD:06985 FBXO11 FBX11|PRMT9|UBR6|VIT1 F-box protein 11 protein-coding 561_WT_peak_3214 chr17 44449762 44450014 + 144 NA promoter-TSS (NR_033799) promoter-TSS (NR_033799) -291 NR_033799 728806 Hs.735097 NR_033799 NSFP1 NSFP N-ethylmaleimide-sensitive factor pseudogene 1 pseudo 561_WT_peak_2392 chr14 106465486 106465939 + 144 NA Intergenic Intergenic -27354 NR_002224 8755 Hs.662288 NR_002224 ENSG00000233988 ADAM6 C14orf96|tMDCIV ADAM metallopeptidase domain 6, pseudogene pseudo 561_WT_peak_1311 chr11 61559860 61560344 + 144 NA promoter-TSS (NM_014206) promoter-TSS (NM_014206) -7 NM_004111 2237 Hs.409065 NM_004111 HPRD:02670 FEN1 FEN-1|MF1|RAD2 flap structure-specific endonuclease 1 protein-coding 561_WT_peak_6384 chr6 86352845 86353171 + 144 NA promoter-TSS (NM_001159677) promoter-TSS (NM_001159677) 35 NM_001159677 10492 Hs.571177 NM_006372 HPRD:06734 SYNCRIP GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q synaptotagmin binding, cytoplasmic RNA interacting protein protein-coding 561_WT_peak_4681 chr20 49434800 49435292 + 144 NA intron (NM_017843, intron 2 of 5) intron (NM_017843, intron 2 of 5) 23615 NM_001010974 55653 Hs.381178 NM_017843 HPRD:06314 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 561_WT_peak_1028 chr10 70804361 70804629 + 144 NA Intergenic Intergenic -43333 NM_002727 5552 Hs.1908 NM_002727 HPRD:01513 SRGN PPG|PRG|PRG1 serglycin protein-coding 561_WT_peak_6257 chr6 30181445 30182191 + 144 NA promoter-TSS (NM_001242783).7 promoter-TSS (NM_001242783).7 -547 NM_001242783 7726 Hs.485041 NM_003449 HPRD:02901 TRIM26 AFP|RNF95|ZNF173 tripartite motif containing 26 protein-coding 561_WT_peak_7279 chr9 68726042 68726620 + 144 NA promoter-TSS (NR_034006) promoter-TSS (NR_034006) -210 NR_034006 100132352 Hs.231861 NR_034006 LOC100132352 - FSHD region gene 1 pseudogene pseudo 561_WT_peak_6800 chr7 104623992 104624687 + 144 NA non-coding (NR_039981, exon 1 of 1) non-coding (NR_039981, exon 1 of 1) 7273 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 561_WT_peak_4457 chr2 208031192 208031566 + 143 NA promoter-TSS (NM_003709) promoter-TSS (NM_003709) 201 NM_001270942 8609 Hs.59908 NM_003709 HPRD:07279 KLF7 UKLF Kruppel-like factor 7 (ubiquitous) protein-coding 561_WT_peak_885 chr10 11220643 11221030 + 143 NA intron (NM_001025076, intron 2 of 14) intron (NM_001025076, intron 2 of 14) 13843 NM_001083591 10659 Hs.309288 NM_006561 HPRD:03964 CELF2 BRUNOL3|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding 561_WT_peak_579 chr1 160765847 160766111 + 143 NA exon (NM_002348, exon 1 of 10) exon (NM_002348, exon 1 of 10) 115 NM_001033667 4063 Hs.403857 NM_002348 HPRD:02817 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 561_WT_peak_5864 chr5 102455659 102455970 + 143 NA promoter-TSS (NM_017676) promoter-TSS (NM_017676) 28 NM_017676 54826 Hs.24088 NM_017676 HPRD:07878 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 561_WT_peak_3076 chr17 20946814 20947112 + 143 NA promoter-TSS (NM_015276) promoter-TSS (NM_015276) -611 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding 561_WT_peak_4525 chr2 242041500 242042002 + 143 NA promoter-TSS (NR_028049) promoter-TSS (NR_028049) -4 NM_182501 130916 Hs.159556 NM_182501 HPRD:14699 MTERF4 MTERFD2 mitochondrial transcription termination factor 4 protein-coding 561_WT_peak_3331 chr17 72459709 72459961 + 143 NA Intergenic Intergenic -2687 NM_007261 11314 Hs.9688 NM_007261 HPRD:09492 CD300A CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 CD300a molecule protein-coding 561_WT_peak_6427 chr6 109195794 109196202 + 143 NA intron (NM_032131, intron 4 of 17) MIR3|SINE|MIR 26379 NM_032131 84071 Hs.645481 NM_032131 HPRD:09809 ARMC2 bA787I22.1 armadillo repeat containing 2 protein-coding 561_WT_peak_3454 chr18 19192092 19192483 + 143 NA promoter-TSS (NM_001291916) promoter-TSS (NM_001291916) 57 NM_006938 6632 Hs.464734 NM_006938 HPRD:03040 SNRPD1 HsT2456|SMD1|SNRPD|Sm-D1 small nuclear ribonucleoprotein D1 polypeptide 16kDa protein-coding 561_WT_peak_7428 chr9 129485047 129485657 + 143 NA Intergenic CpG -81933 NM_014007 23099 Hs.355581 NM_014007 HPRD:08346 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 561_WT_peak_1997 chr13 37633211 37633321 + 143 NA intron (NM_001014286, intron 1 of 25) intron (NM_001014286, intron 1 of 25) 358 NM_001278482 55578 Hs.435815 NM_017569 HPRD:10135 SUPT20H C13|C13orf19|FAM48A|P38IP|SPT20 suppressor of Ty 20 homolog (S. cerevisiae) protein-coding 561_WT_peak_1997-2 chr13 37633387 37633741 + 143 NA promoter-TSS (NM_001278482) promoter-TSS (NM_001278482) 60 NM_001278482 55578 Hs.435815 NM_017569 HPRD:10135 SUPT20H C13|C13orf19|FAM48A|P38IP|SPT20 suppressor of Ty 20 homolog (S. cerevisiae) protein-coding 561_WT_peak_6451 chr6 117002058 117002612 + 143 NA promoter-TSS (NM_002269) promoter-TSS (NM_002269) -32 NM_002269 3841 Hs.182971 NM_002269 HPRD:05179 KPNA5 IPOA6|SRP6 karyopherin alpha 5 (importin alpha 6) protein-coding 561_WT_peak_5275 chr3 141098254 141098496 + 143 NA intron (NM_001080412, intron 3 of 7) intron (NM_001080412, intron 3 of 7) 55320 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 561_WT_peak_4931 chr22 40859142 40859453 + 143 NA 5' UTR (NM_001282660, exon 1 of 12) 5' UTR (NM_001282660, exon 1 of 12) 147 NM_001282660 57591 Hs.654688 NM_020831 HPRD:10445 MKL1 BSAC|MAL|MRTF-A megakaryoblastic leukemia (translocation) 1 protein-coding 561_WT_peak_5750 chr5 54357928 54358379 + 143 NA Intergenic Intergenic 38046 NM_002104 3003 Hs.277937 NM_002104 GZMK TRYP2 granzyme K (granzyme 3; tryptase II) protein-coding 561_WT_peak_3063 chr17 18528925 18529171 + 143 NA promoter-TSS (NR_036647) promoter-TSS (NR_036647) -118 NR_036647 284047 Hs.448012 NR_036647 HPRD:08777 CCDC144B - coiled-coil domain containing 144B (pseudogene) pseudo 561_WT_peak_3397 chr17 80255601 80256099 + 143 NA Intergenic Intergenic 19630 NM_006137 924 Hs.36972 NM_006137 HPRD:01732 CD7 GP40|LEU-9|TP41|Tp40 CD7 molecule protein-coding 561_WT_peak_3691 chr19 19709097 19709932 + 143 NA intron (NR_038198, intron 2 of 7) intron (NR_038198, intron 2 of 7) 20211 NM_025245 80714 Hs.466257 NM_025245 HPRD:16287 PBX4 - pre-B-cell leukemia homeobox 4 protein-coding 561_WT_peak_6038 chr5 178157428 178157880 + 143 NA promoter-TSS (NM_005649) promoter-TSS (NM_005649) 49 NM_005649 6940 Hs.484324 NM_005649 HPRD:03900 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 561_WT_peak_3345 chr17 73781239 73781755 + 143 NA promoter-TSS (NR_039892) promoter-TSS (NR_039892) 577 NM_001080419 85451 Hs.584768 NM_001080419 ENSG00000132478 UNK ZC3H5|ZC3HDC5 unkempt family zinc finger protein-coding 561_WT_peak_2553 chr15 75248580 75249019 + 143 NA exon (NM_017793, exon 1 of 1) exon (NM_017793, exon 1 of 1) 976 NM_017793 54913 Hs.8562 NM_017793 RPP25 - ribonuclease P/MRP 25kDa subunit protein-coding 561_WT_peak_4634 chr20 37504187 37504492 + 143 NA intron (NM_015568, intron 2 of 10) intron (NM_015568, intron 2 of 10) -50616 NM_030919 81610 Hs.726442 NM_030919 HPRD:12744 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83, member D protein-coding 561_WT_peak_1101 chr10 95462243 95462517 + 143 NA promoter-TSS (NM_145246) promoter-TSS (NM_145246) -51 NM_145246 118924 Hs.586650 NM_145246 HPRD:12319 FRA10AC1 C10orf4|F26C11.1-like|FRA10A fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 protein-coding 561_WT_peak_7359 chr9 98486852 98487178 + 143 NA Intergenic Intergenic -150885 NM_001010895 375748 Hs.432364 NM_020207 HPRD:17362 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 excision repair cross-complementation group 6-like 2 protein-coding 561_WT_peak_1010 chr10 64564145 64564621 + 143 NA promoter-TSS (NM_032804) promoter-TSS (NM_032804) -133 NM_032804 84890 Hs.99821 NM_032804 HPRD:12566 ADO C10orf22 2-aminoethanethiol (cysteamine) dioxygenase protein-coding 561_WT_peak_6525 chr6 155492389 155492881 + 143 NA intron (NM_012454, intron 8 of 25) intron (NM_012454, intron 8 of 25) -45462 NM_001010927 26230 Hs.586279 NM_012454 HPRD:05273 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 561_WT_peak_2783 chr16 30569462 30569749 + 143 NA promoter-TSS (NM_001172679) promoter-TSS (NM_001172679) 37 NM_033410 92595 Hs.132227 NM_033410 HPRD:10072 ZNF764 - zinc finger protein 764 protein-coding 561_WT_peak_3641 chr19 12904410 12904953 + 143 NA TTS (NM_002229) TTS (NM_002229) 2371 NM_002229 3726 Hs.25292 NM_002229 HPRD:01303 JUNB AP-1 jun B proto-oncogene protein-coding 561_WT_peak_2996 chr17 4870907 4871266 + 143 NA promoter-TSS (NM_004890) promoter-TSS (NM_004890) 46 NM_004890 9552 Hs.90436 NM_004890 HPRD:10247 SPAG7 ACRP|FSA-1 sperm associated antigen 7 protein-coding 561_WT_peak_1522 chr11 127909071 127909593 + 143 NA Intergenic Intergenic 482873 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 561_WT_peak_289 chr1 74663861 74664220 + 143 NA promoter-TSS (NM_001105659) promoter-TSS (NM_001105659) 144 NM_001199329 8790 Hs.480085 NM_003838 HPRD:06790 FPGT GFPP fucose-1-phosphate guanylyltransferase protein-coding 561_WT_peak_3170 chr17 38375178 38375613 + 143 NA promoter-TSS (NM_133264) promoter-TSS (NM_133264) -179 NM_133264 147179 Hs.421622 NM_133264 HPRD:18304 WIPF2 WICH|WIRE WAS/WASL interacting protein family, member 2 protein-coding 561_WT_peak_4864 chr22 29070174 29070392 + 143 NA intron (NM_001145418, intron 1 of 22) intron (NM_001145418, intron 1 of 22) 5570 NM_001145418 23331 Hs.387856 NM_015281 HPRD:10020 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 561_WT_peak_854 chr10 4173844 4174217 + 143 NA Intergenic (A)n|Simple_repeat|Simple_repeat 80112 NR_120632 101927964 Hs.737041 NR_120632 ENSG00000236990 LOC101927964 - uncharacterized LOC101927964 ncRNA 561_WT_peak_340 chr1 100598377 100598899 + 143 NA promoter-TSS (NM_194292) promoter-TSS (NM_194292) -68 NM_019083 54482 Hs.729095 NM_019083 HPRD:07659 TRMT13 CCDC76 tRNA methyltransferase 13 homolog (S. cerevisiae) protein-coding 561_WT_peak_1600 chr12 12325015 12325260 + 143 NA intron (NM_002336, intron 7 of 22) intron (NM_002336, intron 7 of 22) 60251 NR_036052 100302285 NR_036052 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 561_WT_peak_1550 chr12 2986384 2986778 + 143 NA promoter-TSS (NM_021953) promoter-TSS (NM_021953) 216 NM_001252500 83695 Hs.198853 NM_001252499 HPRD:17487 RHNO1 C12orf32|RHINO RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 561_WT_peak_4910 chr22 38244718 38245342 + 143 NA promoter-TSS (NM_001242923) promoter-TSS (NM_001242923) -349 NM_016091 51386 Hs.446852 NM_016091 HPRD:10932 EIF3L EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005 eukaryotic translation initiation factor 3, subunit L protein-coding 561_WT_peak_2702 chr16 14379642 14379955 + 143 NA Intergenic tRNA-Thr-ACG|tRNA|tRNA -18026 NR_030177 574455 NR_030177 miRBase:MI0003137 MIR193B MIRN193B microRNA 193b ncRNA 561_WT_peak_5211 chr3 113465187 113465560 + 143 NA promoter-TSS (NM_025146) promoter-TSS (NM_025146) -253 NM_025146 80218 Hs.372378 NM_025146 HPRD:14350 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNAT5|hSAN N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 561_WT_peak_5986 chr5 150163269 150163477 + 143 NA intron (NM_032947, intron 1 of 1) intron (NM_032947, intron 1 of 1) 5865 NM_032947 85027 Hs.29444 NM_032947 HPRD:12212 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 561_WT_peak_6098 chr6 11093738 11094336 + 142 NA promoter-TSS (NM_001135575) promoter-TSS (NM_001135575) -229 NM_001135575 221710 Hs.656600 NM_001135575 ENSG00000224531 SMIM13 C6orf228 small integral membrane protein 13 protein-coding 561_WT_peak_6139 chr6 26033236 26033931 + 142 NA exon (NM_003513, exon 1 of 1) exon (NM_003513, exon 1 of 1) 213 NM_003513 8335 Hs.248174 NM_003513 HPRD:09105 HIST1H2AB H2A/m|H2AFM histone cluster 1, H2ab protein-coding 561_WT_peak_2534 chr15 68569842 68570801 + 142 NA 5' UTR (NM_015322, exon 1 of 2) 5' UTR (NM_015322, exon 1 of 2) 180 NM_015322 10116 Hs.362733 NM_015322 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog b (C. elegans) protein-coding 561_WT_peak_3364 chr17 76210219 76210426 + 142 NA promoter-TSS (NM_001168) promoter-TSS (NM_001168) 45 NM_001012270 332 Hs.744872 NM_001168 HPRD:04520 BIRC5 API4|EPR-1 baculoviral IAP repeat containing 5 protein-coding 561_WT_peak_6029 chr5 175788625 175788972 + 142 NA promoter-TSS (NM_001079685) promoter-TSS (NM_001079685) 12 NR_109799 57179 Hs.743257 NM_020444 HPRD:13839 KIAA1191 p60MONOX KIAA1191 protein-coding 561_WT_peak_3919 chr19 58094978 58095333 + 142 NA promoter-TSS (NM_001010879) promoter-TSS (NM_001010879) -473 NM_001010879 284307 Hs.454830 NM_001010879 HPRD:18321 ZIK1 ZNF762 zinc finger protein interacting with K protein 1 protein-coding 561_WT_peak_1390 chr11 67250636 67250881 + 142 NA intron (NM_003977, intron 1 of 5) CpG 253 NM_003977 9049 Hs.412433 NM_003977 HPRD:10408 AIP ARA9|FKBP16|FKBP37|SMTPHN|XAP-2|XAP2 aryl hydrocarbon receptor interacting protein protein-coding 561_WT_peak_5540 chr4 87927760 87928107 + 142 NA promoter-TSS (NM_005935) promoter-TSS (NM_005935) -220 NM_005935 4299 Hs.480190 NM_005935 HPRD:08871 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family, member 1 protein-coding 561_WT_peak_5995 chr5 156452243 156452592 + 142 NA Intergenic L2b|LINE|L2 33070 NM_001099414 26762 Hs.129711 NM_012206 HPRD:09404 HAVCR1 HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 hepatitis A virus cellular receptor 1 protein-coding 561_WT_peak_6637 chr7 35749138 35749344 + 142 NA Intergenic Intergenic -6806 NR_108082 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 561_WT_peak_185 chr1 38157760 38158106 + 142 NA promoter-TSS (NM_018101) promoter-TSS (NM_018101) -140 NM_018101 55143 Hs.524571 NM_018101 HPRD:13017 CDCA8 BOR|BOREALIN|DasraB|MESRGP cell division cycle associated 8 protein-coding 561_WT_peak_791 chr1 231596408 231596670 + 142 NA Intergenic Intergenic 15732 NR_033826 645339 Hs.382049 NR_033826 SNRPD2P2 - small nuclear ribonucleoprotein D2 pseudogene 2 pseudo 561_WT_peak_1074 chr10 82295384 82295869 + 142 NA promoter-TSS (NR_120661) promoter-TSS (NR_120661) 72 NR_120661 101929574 Hs.593663 NR_120661 ENSG00000226659 LOC101929574 - uncharacterized LOC101929574 ncRNA 561_WT_peak_1263 chr11 43890506 43890800 + 142 NA Intergenic Intergenic -11704 NM_139178 221120 Hs.720708 NM_139178 HPRD:16793 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1 alkB, alkylation repair homolog 3 (E. coli) protein-coding 561_WT_peak_2007 chr13 41634753 41635032 + 142 NA promoter-TSS (NM_007187) promoter-TSS (NM_007187) -805 NM_007187 11193 Hs.411300 NM_007187 HPRD:16086 WBP4 FBP21 WW domain binding protein 4 protein-coding 561_WT_peak_368 chr1 110880989 110881380 + 142 NA promoter-TSS (NM_022768) promoter-TSS (NM_022768) 609 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 LOC440600 - uncharacterized LOC440600 ncRNA 561_WT_peak_7274 chr9 66553534 66553852 + 142 NA non-coding (NR_122076, exon 1 of 6) non-coding (NR_122076, exon 1 of 6) 218 NR_122077 403323 Hs.646340 NM_203449 LOC403323 - uncharacterized LOC403323 ncRNA 561_WT_peak_400 chr1 115605310 115605664 + 142 NA intron (NM_005725, intron 2 of 7) intron (NM_005725, intron 2 of 7) 26634 NM_005725 10100 Hs.310458 NM_005725 HPRD:18233 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 561_WT_peak_989 chr10 51371283 51371654 + 142 NA promoter-TSS (NM_003631) promoter-TSS (NM_003631) 89 NR_110767 100652748 Hs.499594 NM_001290117 ENSG00000204152 TIMM23B TIMM23|bA592B15.7 translocase of inner mitochondrial membrane 23 homolog B (yeast) protein-coding 561_WT_peak_5018 chr3 14989491 14989900 + 142 NA promoter-TSS (NR_046255) promoter-TSS (NR_046255) 253 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 561_WT_peak_6271 chr6 31164849 31166120 + 142 NA promoter-TSS (NR_026791).3 promoter-TSS (NR_026791).3 -53 NR_026791 253018 Hs.659818 NR_026791 HPRD:13637 HCG27 bCX101P6.9|bPG299F13.9|bQB115I13.2 HLA complex group 27 (non-protein coding) ncRNA 561_WT_peak_5285 chr3 150125930 150126653 + 142 NA promoter-TSS (NM_014779) promoter-TSS (NM_014779) -497 NM_014779 9819 Hs.722470 NM_014779 HPRD:11101 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family, member 2 protein-coding 561_WT_peak_5733 chr5 44809041 44809288 + 141 NA promoter-TSS (NR_109862) promoter-TSS (NR_109862) 137 NM_016640 10884 Hs.124165 NM_016640 HPRD:17597 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 561_WT_peak_2798 chr16 31724614 31724833 + 141 NA 5' UTR (NM_001130913, exon 1 of 5) 5' UTR (NM_001130913, exon 1 of 5) 173 NM_001130913 124411 Hs.528826 NM_001004300 HPRD:14026 ZNF720 - zinc finger protein 720 protein-coding 561_WT_peak_3416 chr18 3261414 3261841 + 141 NA promoter-TSS (NM_001144944) promoter-TSS (NM_001144944) -484 NM_033546 103910 Hs.190086 NM_033546 HPRD:10095 MYL12B MLC-B|MRLC2 myosin, light chain 12B, regulatory protein-coding 561_WT_peak_672 chr1 198904059 198904391 + 141 NA intron (NR_040073, intron 1 of 2) intron (NR_040073, intron 1 of 2) 2333 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene (non-protein coding) ncRNA 561_WT_peak_7253 chr9 36400526 36400797 + 141 NA promoter-TSS (NM_194329) promoter-TSS (NM_194329) 259 NM_194332 152006 Hs.333503 NM_022781 HPRD:11519 RNF38 - ring finger protein 38 protein-coding 561_WT_peak_563 chr1 156571061 156571481 + 141 NA promoter-TSS (NM_015590) promoter-TSS (NM_015590) 8 NM_182679 54865 Hs.193832 NM_015590 HPRD:13596 GPATCH4 GPATC4 G patch domain containing 4 protein-coding 561_WT_peak_7451 chr9 132175726 132176047 + 141 NA Intergenic CpG -75053 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 561_WT_peak_5147 chr3 69129320 69129499 + 141 NA intron (NM_003968, intron 1 of 17) CpG-18676 115 NM_198195 9039 Hs.154320 NM_003968 HPRD:04413 UBA3 NAE2|UBE1C|hUBA3 ubiquitin-like modifier activating enzyme 3 protein-coding 561_WT_peak_7378 chr9 104160481 104160997 + 141 NA promoter-TSS (NM_197977) promoter-TSS (NM_197977) 180 NM_019051 54534 Hs.288224 NM_019051 HPRD:14768 MRPL50 MRP-L50 mitochondrial ribosomal protein L50 protein-coding 561_WT_peak_711 chr1 207997264 207997512 + 141 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 5664 NR_026817 148696 Hs.125511 NM_001039568 LOC148696 - uncharacterized LOC148696 ncRNA 561_WT_peak_2766 chr16 29637986 29638541 + 141 NA Intergenic L1MB7|LINE|L1 -13225 NR_002593 81893 Hs.677169 NM_031211 HPRD:13964 SLC7A5P1 DC49|LAT1-3TM|MLAS|hLAT1-3TM solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 pseudo 561_WT_peak_3295 chr17 61904806 61905036 + 141 NA promoter-TSS (NM_001199163) promoter-TSS (NM_001199163) 110 NM_017647 117246 Hs.463785 NM_017647 HPRD:17024 FTSJ3 EPCS3|SPB1 FtsJ homolog 3 (E. coli) protein-coding 561_WT_peak_6386 chr6 87861707 87862239 + 141 NA Intergenic CpG -3296 NM_015021 23036 Hs.485892 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 561_WT_peak_5784 chr5 67721038 67721278 + 140 NA Intergenic LTR33B|LTR|ERVL 132762 NM_001242466 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 561_WT_peak_7402 chr9 117373375 117373639 + 140 NA promoter-TSS (NM_153045) promoter-TSS (NM_153045) -199 NM_153045 203197 Hs.522357 NM_153045 HPRD:12988 C9orf91 - chromosome 9 open reading frame 91 protein-coding 561_WT_peak_7513 chrX 23801364 23801656 + 140 NA exon (NM_002970, exon 1 of 6) exon (NM_002970, exon 1 of 6) 235 NR_027783 6303 Hs.28491 NM_002970 HPRD:02431 SAT1 DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1 spermidine/spermine N1-acetyltransferase 1 protein-coding 561_WT_peak_5663 chr5 415600 415813 + 140 NA intron (NM_020731, intron 5 of 11) intron (NM_020731, intron 5 of 11) 27552 NM_138464 116349 Hs.446702 NM_138464 ENSG00000221990 C5orf55 - chromosome 5 open reading frame 55 protein-coding 561_WT_peak_7510 chrX 19765693 19766335 + 140 NA intron (NM_031892, intron 2 of 17) intron (NM_031892, intron 2 of 17) 51903 NM_001024666 30011 Hs.726365 NM_031892 HPRD:02301 SH3KBP1 CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18 SH3-domain kinase binding protein 1 protein-coding 561_WT_peak_3411 chr18 682016 682238 + 140 NA intron (NM_001126123, intron 10 of 15) MamRep605|Unknown|Unknown -23787 NM_001012716 494514 Hs.274959 NM_001012716 HPRD:18668 TYMSOS C18orf56 TYMS opposite strand protein-coding 561_WT_peak_4179 chr2 86667682 86668139 + 140 NA promoter-TSS (NM_018433) promoter-TSS (NM_018433) -361 NM_018433 55818 Hs.557425 NM_018433 HPRD:11054 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine (K)-specific demethylase 3A protein-coding 561_WT_peak_6483 chr6 135818949 135819635 + 140 NA promoter-TSS (NM_001134830) promoter-TSS (NM_001134830) 353 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 561_WT_peak_420 chr1 143673258 143673517 + 140 NA promoter-TSS (NR_121646) promoter-TSS (NR_121646) -97 NR_121646 26860 NR_121646 RNU1-13P RNU1-71|RNU1P6|RNVU1-2|U1.1|U1P1|vU1.2 RNA, U1 small nuclear 13, pseudogene snRNA 561_WT_peak_7618 chrX 135578995 135579341 + 140 NA promoter-TSS (NM_001163280) promoter-TSS (NM_001163280) -70 NM_001163280 27336 Hs.204475 NM_014500 HPRD:02282 HTATSF1 TAT-SF1|TATSF1|dJ196E23.2 HIV-1 Tat specific factor 1 protein-coding 561_WT_peak_1493 chr11 117103017 117103242 + 140 NA promoter-TSS (NM_207343) promoter-TSS (NM_207343) 112 NM_004716 9159 Hs.648612 NM_004716 PCSK7 LPC|PC7|PC8|SPC7 proprotein convertase subtilisin/kexin type 7 protein-coding 561_WT_peak_1681 chr12 49412206 49412818 + 140 NA promoter-TSS (NM_001206710) promoter-TSS (NM_001206710) 19 NM_001206710 5571 Hs.530862 NM_002733 HPRD:04118 PRKAG1 AMPKG protein kinase, AMP-activated, gamma 1 non-catalytic subunit protein-coding 561_WT_peak_280 chr1 67660229 67660674 + 140 NA intron (NM_144701, intron 4 of 10) intron (NM_144701, intron 4 of 10) 28282 NM_144701 149233 Hs.677426 NM_144701 HPRD:16249 IL23R - interleukin 23 receptor protein-coding 561_WT_peak_3713 chr19 31389808 31390002 + 140 NA Intergenic Intergenic 450285 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 561_WT_peak_6803 chr7 104656117 104656319 + 140 NA intron (NM_182931, intron 1 of 26) intron (NM_182931, intron 1 of 26) 1581 NM_018682 55904 Hs.592262 NM_018682 HPRD:10528 KMT2E HDCMC04P|MLL5|NKp44L lysine (K)-specific methyltransferase 2E protein-coding 561_WT_peak_7312 chr9 79186726 79186931 + 140 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA 71279 NM_001097636 2650 Hs.521568 NM_001490 HPRD:02669 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1, core 2 protein-coding 561_WT_peak_6929 chr8 11059002 11059282 + 140 NA promoter-TSS (NM_173683) promoter-TSS (NM_173683) -267 NM_173683 286046 Hs.657083 NM_173683 HPRD:12926 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK, Kell blood group complex subunit-related family, member 6 protein-coding 561_WT_peak_2042 chr13 49079651 49079918 + 139 NA intron (NM_001286832, intron 5 of 9) intron (NM_001286832, intron 5 of 9) 27608 NM_001268 1102 Hs.652712 NM_001268 HPRD:04631 RCBTB2 CHC1L|RLG regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 protein-coding 561_WT_peak_258 chr1 59407704 59408016 + 139 NA Intergenic Intergenic -78288 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 561_WT_peak_6162 chr6 26271144 26271686 + 139 NA exon (NM_003534, exon 1 of 1) exon (NM_003534, exon 1 of 1) 197 NM_003534 8355 Hs.247813 NM_003534 HPRD:11909 HIST1H3G H3/h|H3FH histone cluster 1, H3g protein-coding 561_WT_peak_5534 chr4 84377061 84377420 + 139 NA promoter-TSS (NM_001297756) promoter-TSS (NM_001297756) 155 NM_001297770 51023 Hs.334772 NM_016067 MRPS18C MRP-S18-1|MRP-S18-c|MRPS18-1|S18mt-c|mrps18-c mitochondrial ribosomal protein S18C protein-coding 561_WT_peak_2445 chr15 41953745 41954243 + 139 NA intron (NM_001080541, intron 1 of 22) CpG 1384 NM_001080541 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MGA, MAX dimerization protein protein-coding 561_WT_peak_6914 chr7 156432957 156433287 + 139 NA promoter-TSS (NM_001184996) promoter-TSS (NM_001184996) 226 NR_026865 129790 Hs.647014 NM_032625 HPRD:12908 C7orf13 MY040 chromosome 7 open reading frame 13 ncRNA 561_WT_peak_3481 chr18 32820979 32821236 + 139 NA intron (NM_001135178, intron 1 of 3) CpG 113 NM_001135178 84307 Hs.591061 NM_032347 HPRD:18335 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 561_WT_peak_4909 chr22 38203705 38203935 + 139 NA promoter-TSS (NM_001171690) promoter-TSS (NM_001171690) -92 NM_001171690 23464 Hs.54609 NM_014291 HPRD:07602 GCAT KBL glycine C-acetyltransferase protein-coding 561_WT_peak_6934 chr8 19330952 19331255 + 139 NA intron (NR_024040, intron 3 of 9) intron (NR_024040, intron 3 of 9) 128953 NM_001130518 55790 Hs.613729 NM_018371 HPRD:13114 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 561_WT_peak_784 chr1 228781731 228781963 + 139 NA intron (NR_037962, intron 1 of 2) CpG-2319 1190 NR_002834 574029 Hs.647777 NR_002834 DUSP5P1 DUSP5P dual specificity phosphatase 5 pseudogene 1 pseudo 561_WT_peak_5689 chr5 35854078 35854352 + 139 NA Intergenic Intergenic -2762 NM_002185 3575 Hs.591742 NM_002185 HPRD:00893 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 561_WT_peak_6984 chr8 38239959 38240726 + 139 NA promoter-TSS (NM_017778) promoter-TSS (NM_017778) -552 NM_017778 54904 Hs.434966 NM_017778 HPRD:06155 WHSC1L1 NSD3|pp14328 Wolf-Hirschhorn syndrome candidate 1-like 1 protein-coding 561_WT_peak_4965 chr22 47187201 47187644 + 139 NA intron (NM_001284305, intron 1 of 12) intron (NM_001284305, intron 1 of 12) 17598 NM_001284305 25771 Hs.435044 NM_014346 HPRD:15474 TBC1D22A C22orf4|HSC79E021 TBC1 domain family, member 22A protein-coding 561_WT_peak_4433 chr2 201753669 201753903 + 138 NA promoter-TSS (NM_001136039) promoter-TSS (NM_001136039) 63 NM_032472 53938 Hs.121076 NM_032472 HPRD:15163 PPIL3 CYPJ peptidylprolyl isomerase (cyclophilin)-like 3 protein-coding 561_WT_peak_2902 chr16 74330667 74330978 + 138 NA exon (NM_002811, exon 1 of 7) exon (NM_002811, exon 1 of 7) 149 NM_002811 5713 Hs.440604 NM_002811 HPRD:01147 PSMD7 MOV34|P40|Rpn8|S12 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 protein-coding 561_WT_peak_5114 chr3 50611147 50611470 + 138 NA intron (NM_016173, intron 4 of 10) intron (NM_016173, intron 4 of 10) -2850 NM_001171741 51161 Hs.517860 NM_016210 HPRD:16654 C3orf18 G20 chromosome 3 open reading frame 18 protein-coding 561_WT_peak_3095 chr17 27220612 27220836 + 138 NA intron (NM_004475, intron 1 of 10) LTR2B|LTR|ERV1 3991 NM_004475 2319 Hs.514038 NM_004475 HPRD:00580 FLOT2 ECS-1|ECS1|ESA|ESA1|M17S1 flotillin 2 protein-coding 561_WT_peak_6196-2 chr6 27113634 27114612 + 138 NA promoter-TSS (NM_080596) promoter-TSS (NM_080596) 514 NM_080593 85236 Hs.437275 NM_080593 HPRD:13658 HIST1H2BK H2B/S|H2BFAiii|H2BFT|H2BK histone cluster 1, H2bk protein-coding 561_WT_peak_6406 chr6 96969636 96970119 + 138 NA intron (NM_015323, intron 1 of 18) CpG 175 NM_015323 23376 Hs.149367 NM_015323 HPRD:11109 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1-specific ligase 1 protein-coding 561_WT_peak_5981 chr5 149380048 149380317 + 138 NA promoter-TSS (NM_001243253) promoter-TSS (NM_001243253) -11 NM_001243253 81789 Hs.169333 NM_030953 HPRD:18190 TIGD6 - tigger transposable element derived 6 protein-coding 561_WT_peak_4905 chr22 37625999 37626251 + 138 NA intron (NM_002872, intron 5 of 6) intron (NM_002872, intron 5 of 6) 14214 NM_002872 5880 Hs.517601 NM_002872 HPRD:03628 RAC2 EN-7|Gx|HSPC022|p21-Rac2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) protein-coding 561_WT_peak_153 chr1 32110035 32110397 + 138 NA promoter-TSS (NR_033688) promoter-TSS (NR_033688) 2 NR_033688 553115 Hs.470417 NM_012392 HPRD:10143 PEF1 ABP32|PEF1A penta-EF-hand domain containing 1 protein-coding 561_WT_peak_4699 chr20 55967913 55968342 + 138 NA intron (NM_183425, intron 2 of 2) intron (NM_183425, intron 2 of 2) 1673 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 561_WT_peak_7547 chrX 49129739 49130075 + 138 NA intron (NM_033215, intron 1 of 3) intron (NM_033215, intron 1 of 3) 3601 NM_001184745 89801 Hs.433652 NM_033215 HPRD:15170 PPP1R3F HB2E|R3F protein phosphatase 1, regulatory subunit 3F protein-coding 561_WT_peak_2429 chr15 38980917 38981166 + 138 NA Intergenic LTR8|LTR|ERV1 -7758 NM_207444 400359 Hs.448785 NM_207444 HPRD:13418 C15orf53 - chromosome 15 open reading frame 53 protein-coding 561_WT_peak_7435 chr9 130788496 130788851 + 138 NA Intergenic Intergenic 40926 NM_197956 203245 Hs.373606 NM_197956 HPRD:12987 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 561_WT_peak_285 chr1 68962525 68962757 + 138 NA exon (NM_001114120, exon 1 of 12) exon (NM_001114120, exon 1 of 12) 263 NM_017779 55635 Hs.445098 NM_017779 HPRD:10879 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 561_WT_peak_5727 chr5 43120873 43121186 + 138 NA promoter-TSS (NR_123719) promoter-TSS (NR_123719) 26 NR_123719 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 561_WT_peak_4818 chr21 47305982 47306537 + 138 NA intron (NM_020528, intron 1 of 13) intron (NM_020528, intron 1 of 13) 36384 NM_020528 54039 Hs.474049 NM_020528 HPRD:10534 PCBP3 ALPHA-CP3 poly(rC) binding protein 3 protein-coding 561_WT_peak_958 chr10 38692253 38692585 + 138 NA promoter-TSS (NR_027269) promoter-TSS (NR_027269) -639 NR_027269 285961 Hs.406568 NR_027269 SEPT7P9 CDC10L|SEPT7L|bA291L22.2 septin 7 pseudogene 9 pseudo 561_WT_peak_4562 chr20 7999908 8000407 + 138 NA exon (NM_021156, exon 1 of 8) exon (NM_021156, exon 1 of 8) 236 NM_021156 56255 Hs.169358 NM_021156 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin-related transmembrane protein 4 protein-coding 561_WT_peak_20 chr1 2187011 2187735 + 138 NA intron (NM_003036, intron 1 of 6) intron (NM_003036, intron 1 of 6) 27239 NM_003036 6497 Hs.656507 NM_003036 HPRD:01271 SKI SGS|SKV SKI proto-oncogene protein-coding 561_WT_peak_5536 chr4 84406445 84406612 + 138 NA promoter-TSS (NM_139076) promoter-TSS (NM_139076) -238 NM_139076 84142 Hs.334772 NM_139076 HPRD:08584 FAM175A ABRA1|CCDC98 family with sequence similarity 175, member A protein-coding 561_WT_peak_6338 chr6 44214876 44215435 + 138 NA intron (NM_001271972, intron 1 of 11) CpG 460 NM_007355 3326 Hs.509736 NM_007355 HPRD:06763 HSP90AB1 D6S182|HSP84|HSP90B|HSPC2|HSPCB heat shock protein 90kDa alpha (cytosolic), class B member 1 protein-coding 561_WT_peak_1351 chr11 65190019 65191040 + 138 NA non-coding (NR_028272, exon 1 of 1) non-coding (NR_028272, exon 1 of 1) 260 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_1259 chr11 43333408 43333793 + 138 NA promoter-TSS (NM_006595) promoter-TSS (NM_006595) 95 NM_006595 8539 Hs.435771 NM_006595 HPRD:16500 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 561_WT_peak_2851 chr16 57278618 57278912 + 138 NA promoter-TSS (NM_012106) promoter-TSS (NM_012106) -273 NM_012106 23568 Hs.632873 NM_012106 HPRD:09808 ARL2BP BART|BART1|RP66 ADP-ribosylation factor-like 2 binding protein protein-coding 561_WT_peak_6563 chr7 149845 150079 + 138 NA non-coding (NR_108065, exon 1 of 2) non-coding (NR_108065, exon 1 of 2) 244 NR_108064 100507642 Hs.557780 NR_108064 LOC100507642 - uncharacterized LOC100507642 ncRNA 561_WT_peak_536 chr1 153962981 153963601 + 138 NA promoter-TSS (NM_001030) promoter-TSS (NM_001030) 52 NM_001030 6232 Hs.546291 NM_001030 HPRD:04744 RPS27 MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 561_WT_peak_3667 chr19 16197290 16197560 + 138 NA intron (NM_003290, intron 3 of 7) intron (NM_003290, intron 3 of 7) 10290 NM_003290 7171 Hs.631618 NM_003290 HPRD:11734 TPM4 HEL-S-108 tropomyosin 4 protein-coding 561_WT_peak_6219 chr6 27782847 27783298 + 138 NA promoter-TSS (NM_021066) promoter-TSS (NM_021066) 250 NM_003521 8342 Hs.182432 NM_003521 HPRD:04154 HIST1H2BM H2B/e|H2BFE|dJ160A22.3 histone cluster 1, H2bm protein-coding 561_WT_peak_179 chr1 36554346 36554754 + 138 NA promoter-TSS (NM_017825) promoter-TSS (NM_017825) 97 NM_017825 54936 Hs.18021 NM_017825 HPRD:12432 ADPRHL2 ARH3 ADP-ribosylhydrolase like 2 protein-coding 561_WT_peak_6591 chr7 8174406 8174619 + 138 NA intron (NM_001276478, intron 12 of 13) intron (NM_001276478, intron 12 of 13) 127170 NM_022307 3382 Hs.487561 NM_004968 HPRD:00971 ICA1 ICA69|ICAp69 islet cell autoantigen 1, 69kDa protein-coding 561_WT_peak_1710 chr12 53773017 53773251 + 138 NA promoter-TSS (NM_138473) promoter-TSS (NM_138473) -845 NM_138473 6667 Hs.620754 NM_003109 HPRD:01796 SP1 - Sp1 transcription factor protein-coding 561_WT_peak_6196 chr6 27113484 27113536 + 138 NA intron (NM_080593, intron 1 of 1) intron (NM_080593, intron 1 of 1) 1127 NM_080593 85236 Hs.437275 NM_080593 HPRD:13658 HIST1H2BK H2B/S|H2BFAiii|H2BFT|H2BK histone cluster 1, H2bk protein-coding 561_WT_peak_1294 chr11 59318019 59318793 + 137 NA Intergenic Intergenic 36020 NM_001004711 390199 Hs.553757 NM_001004711 HPRD:17728 OR4D9 OR11-253 olfactory receptor, family 4, subfamily D, member 9 protein-coding 561_WT_peak_4695 chr20 52532232 52532609 + 137 NA Intergenic Intergenic -40172 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 561_WT_peak_4849 chr22 21921966 21922455 + 137 NA non-coding (NR_046082, exon 1 of 4) non-coding (NR_046082, exon 1 of 4) 191 NR_046082 7332 Hs.108104 NM_003347 HPRD:04762 UBE2L3 E2-F1|L-UBC|UBCH7|UbcM4 ubiquitin-conjugating enzyme E2L 3 protein-coding 561_WT_peak_1935 chr12 133656577 133657838 + 137 NA 5' UTR (NM_001300776, exon 1 of 4) 5' UTR (NM_001300776, exon 1 of 4) 418 NM_001300778 7699 Hs.181552 NM_003440 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 561_WT_peak_7468 chr9 135545212 135545582 + 137 NA promoter-TSS (NM_012204) promoter-TSS (NM_012204) -331 NM_012204 9329 Hs.656646 NM_012204 GTF3C4 KAT12|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC, polypeptide 4, 90kDa protein-coding 561_WT_peak_2780 chr16 30483733 30484083 + 137 NA promoter-TSS (NM_002209) promoter-TSS (NM_002209) -75 NM_002209 3683 Hs.174103 NM_002209 HPRD:01079 ITGAL CD11A|LFA-1|LFA1A integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) protein-coding 561_WT_peak_3232 chr17 47022185 47022494 + 137 NA promoter-TSS (NM_007241) promoter-TSS (NM_007241) -185 NM_007241 11267 Hs.127249 NM_007241 SNF8 Dot3|EAP30|VPS22 SNF8, ESCRT-II complex subunit protein-coding 561_WT_peak_2689 chr16 9184874 9185146 + 137 NA promoter-TSS (NM_014117) promoter-TSS (NM_014117) -527 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 561_WT_peak_344 chr1 101644366 101644988 + 137 NA Intergenic Intergenic 57407 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 561_WT_peak_4757 chr21 26979614 26979834 + 137 NA promoter-TSS (NM_017446) promoter-TSS (NM_017446) 77 NM_017446 54148 Hs.420696 NM_017446 HPRD:11371 MRPL39 C21orf92|L39mt|MRP-L5|MRPL5|PRED22|PRED66|RPML5 mitochondrial ribosomal protein L39 protein-coding 561_WT_peak_1152 chr10 116697998 116698232 + 137 NA exon (NM_139169, exon 1 of 8) exon (NM_139169, exon 1 of 8) 163 NM_139169 142940 Hs.21187 NM_139169 HPRD:18229 TRUB1 PUS4 TruB pseudouridine (psi) synthase family member 1 protein-coding 561_WT_peak_4936 chr22 41487795 41488160 + 137 NA promoter-TSS (NR_031694) promoter-TSS (NR_031694) -540 NR_031694 100302237 NR_031694 miRBase:MI0006428 MIR1281 MIRN1281|hsa-mir-1281 microRNA 1281 ncRNA 561_WT_peak_2758 chr16 28874621 28874991 + 137 NA promoter-TSS (NM_001145795) promoter-TSS (NM_001145795) -272 NM_001145795 25970 Hs.15744 NM_015503 HPRD:12336 SH2B1 PSM|SH2B SH2B adaptor protein 1 protein-coding 561_WT_peak_2201 chr14 50468298 50469341 + 137 NA intron (NM_001012706, intron 1 of 3) intron (NM_001012706, intron 1 of 3) 5419 NM_001012706 283551 Hs.660867 NM_001012706 HPRD:13397 C14orf182 - chromosome 14 open reading frame 182 protein-coding 561_WT_peak_3472 chr18 23806212 23806735 + 137 NA promoter-TSS (NM_001293725) promoter-TSS (NM_001293725) -374 NR_121653 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa protein-coding 561_WT_peak_5204 chr3 112280167 112280774 + 137 NA promoter-TSS (NM_017945) promoter-TSS (NM_017945) 340 NM_001278712 64422 Hs.477126 NM_022488 HPRD:10654 ATG3 APG3|APG3-LIKE|APG3L|PC3-96 autophagy related 3 protein-coding 561_WT_peak_148 chr1 29063083 29063783 + 137 NA promoter-TSS (NM_001172828) promoter-TSS (NM_001172828) -19 NM_001172828 51441 Hs.532286 NM_016258 HPRD:06587 YTHDF2 HGRG8|NY-REN-2 YTH domain family, member 2 protein-coding 561_WT_peak_4298 chr2 131099856 131100238 + 137 NA promoter-TSS (NM_032357) promoter-TSS (NM_032357) -91 NM_032357 84317 Hs.104203 NM_032357 HPRD:14428 CCDC115 ccp1 coiled-coil domain containing 115 protein-coding 561_WT_peak_4673 chr20 48329937 48330216 + 137 NA intron (NM_004776, intron 1 of 8) CpG 345 NM_004776 9334 Hs.370487 NM_004776 HPRD:06807 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 protein-coding 561_WT_peak_316 chr1 90460711 90461145 + 136 NA promoter-TSS (NR_002830) promoter-TSS (NR_002830) 250 NM_182976 284695 Hs.306221 NM_181781 HPRD:15774 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 561_WT_peak_1207 chr11 10562532 10562881 + 136 NA promoter-TSS (NR_046375) promoter-TSS (NR_046375) 68 NM_016422 50862 Hs.44685 NM_016422 HPRD:11509 RNF141 ZFP26|ZNF230 ring finger protein 141 protein-coding 561_WT_peak_7267 chr9 44245294 44245674 + 136 NA Intergenic Intergenic -139101 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 561_WT_peak_2106 chr13 113864212 113864548 + 136 NA exon (NM_001008895, exon 2 of 20) exon (NM_001008895, exon 2 of 20) 561 NM_001008895 8451 Hs.339735 NM_003589 HPRD:07218 CUL4A - cullin 4A protein-coding 561_WT_peak_3037 chr17 8124112 8124415 + 136 NA non-coding (NR_026951, exon 3 of 3) non-coding (NR_026951, exon 3 of 3) 3098 NR_026951 284029 Hs.121692 NM_173621 HPRD:08755 LINC00324 C17orf44|NCRNA00324 long intergenic non-protein coding RNA 324 ncRNA 561_WT_peak_758 chr1 226890977 226891524 + 136 NA intron (NM_002221, intron 2 of 7) CpG -28481 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 (non-protein coding) ncRNA 561_WT_peak_3177 chr17 40021385 40021701 + 136 NA promoter-TSS (NM_018143) promoter-TSS (NM_018143) 86 NM_018143 55175 Hs.592134 NM_018143 HPRD:13924 KLHL11 - kelch-like family member 11 protein-coding 561_WT_peak_6163 chr6 26273206 26273986 + 136 NA TTS (NM_003525) TTS (NM_003525) 392 NM_003525 8346 Hs.553506 NM_003525 HPRD:11903 HIST1H2BI H2B/k|H2BFK histone cluster 1, H2bi protein-coding 561_WT_peak_5034 chr3 20081248 20081495 + 136 NA promoter-TSS (NM_003884) promoter-TSS (NM_003884) -153 NM_003884 8850 Hs.533055 NM_003884 HPRD:06780 KAT2B CAF|P/CAF|PCAF K(lysine) acetyltransferase 2B protein-coding 561_WT_peak_1934 chr12 133613777 133614201 + 136 NA promoter-TSS (NM_001289972) promoter-TSS (NM_001289972) 117 NM_003428 7637 Hs.445019 NM_003428 HPRD:15891 ZNF84 HPF2 zinc finger protein 84 protein-coding 561_WT_peak_5196 chr3 108308108 108308778 + 136 NA promoter-TSS (NM_020890) promoter-TSS (NM_020890) 48 NM_020890 57650 Hs.591308 NM_020890 HPRD:11151 KIAA1524 CIP2A|p90 KIAA1524 protein-coding 561_WT_peak_3847 chr19 49469046 49469401 + 136 NA intron (NM_000146, intron 2 of 3) CpG-14126 657 NM_000146 2512 Hs.433670 NM_000146 HPRD:00616 FTL LFTD|NBIA3 ferritin, light polypeptide protein-coding 561_WT_peak_1630 chr12 25541222 25541561 + 136 NA Intergenic Intergenic -137526 NM_033360 3845 Hs.505033 NM_004985 HPRD:01817 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RASK2 Kirsten rat sarcoma viral oncogene homolog protein-coding 561_WT_peak_111 chr1 25291401 25291946 + 136 NA promoter-TSS (NM_001031680) promoter-TSS (NM_001031680) -172 NM_001031680 864 Hs.170019 NM_004350 HPRD:02565 RUNX3 AML2|CBFA3|PEBP2aC runt-related transcription factor 3 protein-coding 561_WT_peak_2929 chr16 82957965 82958363 + 136 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 65739 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 561_WT_peak_5745 chr5 53607615 53607767 + 136 NA Intergenic Intergenic -1288 NM_019087 54622 Hs.659125 NM_019087 HPRD:12471 ARL15 ARFRP2 ADP-ribosylation factor-like 15 protein-coding 561_WT_peak_3162 chr17 37975592 37975884 + 136 NA intron (NM_001257409, intron 2 of 5) intron (NM_001257409, intron 2 of 5) -41260 NM_001284516 22806 Hs.371680 NM_012481 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 (Aiolos) protein-coding 561_WT_peak_222 chr1 46049722 46050286 + 136 NA intron (NM_001195193, intron 1 of 12) CpG 344 NM_002482 4678 Hs.319334 NM_002482 HPRD:04423 NASP FLB7527|PRO1999 nuclear autoantigenic sperm protein (histone-binding) protein-coding 561_WT_peak_1134 chr10 104192146 104192486 + 136 NA 5' UTR (NM_024040, exon 1 of 9) 5' UTR (NM_024040, exon 1 of 9) 107 NM_024040 79004 Hs.500874 NM_024040 HPRD:13099 CUEDC2 C10orf66|bA18I14.5 CUE domain containing 2 protein-coding 561_WT_peak_2907 chr16 75109140 75109588 + 136 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 41306 NM_194436 197257 Hs.380929 NM_153486 HPRD:06318 LDHD DLD lactate dehydrogenase D protein-coding 561_WT_peak_4437 chr2 201991119 201991361 + 136 NA intron (NM_001127183, intron 1 of 9) LTR6B|LTR|ERV1 -6448 NM_001202518 8837 Hs.390736 NM_003879 HPRD:04671 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD-like apoptosis regulator protein-coding 561_WT_peak_4682 chr20 49545925 49546269 + 136 NA intron (NM_015339, intron 1 of 4) intron (NM_015339, intron 1 of 4) -1424 NR_110009 101927631 Hs.301898 NR_110007 ENSG00000259456 ADNP-AS1 - ADNP antisense RNA 1 ncRNA 561_WT_peak_7027 chr8 59465754 59466815 + 136 NA intron (NM_001007070, intron 1 of 8) intron (NM_001007070, intron 1 of 8) 556 NM_001007068 6386 Hs.200804 NM_005625 HPRD:03741 SDCBP MDA-9|ST1|SYCL|TACIP18 syndecan binding protein (syntenin) protein-coding 561_WT_peak_6447 chr6 116600449 116601103 + 136 NA promoter-TSS (NM_001080976) promoter-TSS (NM_001080976) 504 NM_003309 7259 Hs.458358 NM_003309 TSPYL1 TSPYL TSPY-like 1 protein-coding 561_WT_peak_1768 chr12 72233566 72233944 + 136 NA intron (NR_027449, intron 1 of 15) intron (NR_027449, intron 1 of 15) 268 NR_027449 64786 Hs.284630 NM_022771 HPRD:15470 TBC1D15 RAB7-GAP TBC1 domain family, member 15 protein-coding 561_WT_peak_2282 chr14 74035863 74036657 + 136 NA exon (NM_006821, exon 1 of 3) exon (NM_006821, exon 1 of 3) 497 NM_006821 10965 Hs.446685 NM_006821 HPRD:10173 ACOT2 CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128 acyl-CoA thioesterase 2 protein-coding 561_WT_peak_1700 chr12 51632640 51632944 + 136 NA intron (NM_001136266, intron 1 of 3) CpG 284 NM_001136267 9802 Hs.369761 NM_014764 HPRD:08463 DAZAP2 PRTB DAZ associated protein 2 protein-coding 561_WT_peak_978 chr10 43904383 43904597 + 136 NA promoter-TSS (NM_001098205) promoter-TSS (NM_001098205) -158 NM_001098205 3185 Hs.808 NM_004966 HPRD:03023 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 561_WT_peak_1967 chr13 27705393 27705707 + 136 NA intron (NR_046547, intron 1 of 2) MIRc|SINE|MIR 5880 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 561_WT_peak_1765 chr12 70636828 70637438 + 136 NA promoter-TSS (NR_120459) promoter-TSS (NR_120459) 7 NR_120461 101928062 Hs.568059 NR_120459 ENSG00000257815 LINC01481 - long intergenic non-protein coding RNA 1481 ncRNA 561_WT_peak_7095 chr8 103110094 103110387 + 136 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 26322 NM_001040624 83988 Hs.492427 NM_032041 HPRD:09466 NCALD - neurocalcin delta protein-coding 561_WT_peak_4934 chr22 41346682 41347158 + 136 NA promoter-TSS (NM_014248) promoter-TSS (NM_014248) -431 NM_014248 9978 Hs.474949 NM_014248 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1, E3 ubiquitin protein ligase protein-coding 561_WT_peak_3483 chr18 32923901 32924489 + 136 NA intron (NM_006965, intron 1 of 3) CpG 231 NM_006965 7572 Hs.514802 NM_006965 HPRD:01921 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding 561_WT_peak_2011 chr13 42031287 42031529 + 136 NA promoter-TSS (NM_014059) promoter-TSS (NM_014059) -134 NM_014059 28984 Hs.507866 NM_014059 HPRD:17970 RGCC C13orf15|RGC-32|RGC32|bA157L14.2 regulator of cell cycle protein-coding 561_WT_peak_3661 chr19 15489949 15490512 + 136 NA TTS (NM_001291478) TTS (NM_001291478) 382 NM_005858 10270 Hs.594496 NM_005858 HPRD:05258 AKAP8 AKAP 95|AKAP-8|AKAP-95|AKAP95 A kinase (PRKA) anchor protein 8 protein-coding 561_WT_peak_772 chr1 228750462 228750649 + 136 NA Intergenic CpG -29839 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_6741 chr7 86781777 86782287 + 136 NA 5' UTR (NM_021145, exon 1 of 20) 5' UTR (NM_021145, exon 1 of 20) 162 NM_021145 9988 Hs.196129 NM_021145 HPRD:09770 DMTF1 DMP1|DMTF|MRUL|hDMP1 cyclin D binding myb-like transcription factor 1 protein-coding 561_WT_peak_902 chr10 17470814 17471075 + 135 NA intron (NM_001004470, intron 2 of 7) intron (NM_001004470, intron 2 of 7) 25310 NM_001004470 338596 Hs.677766 NM_001004470 ST8SIA6 SIA8F|SIAT8F|ST8SIA-VI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 561_WT_peak_6726 chr7 75405973 75406180 + 135 NA intron (NM_006072, intron 1 of 3) L1ME3A|LINE|L1 12988 NM_006072 10344 Hs.131342 NM_006072 HPRD:05262 CCL26 IMAC|MIP-4a|MIP-4alpha|SCYA26|TSC-1 chemokine (C-C motif) ligand 26 protein-coding 561_WT_peak_5817 chr5 75698719 75698966 + 135 NA promoter-TSS (NM_006633) promoter-TSS (NM_006633) -238 NM_006633 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 561_WT_peak_6564 chr7 302865 303216 + 135 NA Intergenic Intergenic -27096 NM_001195127 100288524 Hs.702860 NM_001195127 WI2-2373I1.2 - forkhead box L1-like protein-coding 561_WT_peak_5091 chr3 47204599 47205065 + 135 NA intron (NM_014159, intron 1 of 20) CpG 635 NM_014159 29072 Hs.517941 NM_012271 HPRD:11043 SETD2 HBP231|HIF-1|HIP-1|HYPB|KMT3A|SET2|p231HBP SET domain containing 2 protein-coding 561_WT_peak_6113 chr6 16481931 16482285 + 135 NA intron (NM_001128164, intron 6 of 7) intron (NM_001128164, intron 6 of 7) 243297 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 561_WT_peak_6670 chr7 50428275 50428615 + 135 NA intron (NM_001291840, intron 2 of 2) intron (NM_001291840, intron 2 of 2) 69801 NM_001291842 10320 Hs.435949 NM_006060 HPRD:04318 IKZF1 Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 (Ikaros) protein-coding 561_WT_peak_2019 chr13 43566074 43567014 + 135 NA promoter-TSS (NM_033255) promoter-TSS (NM_033255) -137 NM_033255 94240 Hs.546467 NM_033255 HPRD:06309 EPSTI1 BRESI1 epithelial stromal interaction 1 (breast) protein-coding 561_WT_peak_914 chr10 22725665 22726399 + 135 NA non-coding (NR_036533, exon 1 of 1) non-coding (NR_036533, exon 1 of 1) 826 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 561_WT_peak_3955 chr2 9563677 9564065 + 135 NA promoter-TSS (NM_004763) promoter-TSS (NM_004763) 205 NM_016207 51692 Hs.515972 NM_016207 HPRD:05825 CPSF3 CPSF-73|CPSF73 cleavage and polyadenylation specific factor 3, 73kDa protein-coding 561_WT_peak_3538 chr18 77720217 77720448 + 135 NA Intergenic LTR5_Hs|LTR|ERVK -4250 NM_001136180 440498 Hs.191582 NM_001136180 ENSG00000226742 HSBP1L1 - heat shock factor binding protein 1-like 1 protein-coding 561_WT_peak_1686 chr12 49582455 49582957 + 135 NA 5' UTR (NM_001270399, exon 1 of 4) 5' UTR (NM_001270399, exon 1 of 4) 401 NM_001270399 7846 Hs.654422 NM_006009 HPRD:03959 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin, alpha 1a protein-coding 561_WT_peak_3748 chr19 37861810 37862296 + 135 NA promoter-TSS (NM_032453) promoter-TSS (NM_032453) -6 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 561_WT_peak_374 chr1 111418074 111418303 + 135 NA intron (NM_001040033, intron 2 of 8) intron (NM_001040033, intron 2 of 8) 2466 NM_000560 963 Hs.443057 NM_000560 HPRD:01054 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 561_WT_peak_7122 chr8 120844730 120845181 + 135 NA 5' UTR (NM_003184, exon 1 of 26) 5' UTR (NM_003184, exon 1 of 26) 119 NM_003184 6873 Hs.122752 NM_003184 HPRD:07060 TAF2 CIF150|MRT40|TAF2B|TAFII150 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa protein-coding 561_WT_peak_1411 chr11 74109876 74110138 + 135 NA promoter-TSS (NM_173582) promoter-TSS (NM_173582) -505 NM_173582 283209 Hs.26612 NM_173582 HPRD:11427 PGM2L1 BM32A phosphoglucomutase 2-like 1 protein-coding 561_WT_peak_4278 chr2 120516984 120517380 + 135 NA promoter-TSS (NM_002830) promoter-TSS (NM_002830) -25 NM_002830 5775 Hs.469809 NM_002830 HPRD:01471 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) protein-coding 561_WT_peak_575 chr1 160231977 160232283 + 135 NA non-coding (NR_028104, exon 1 of 13) non-coding (NR_028104, exon 1 of 13) 147 NR_028106 50717 Hs.632447 NM_015726 HPRD:18300 DCAF8 GAN2|H326|WDR42A DDB1 and CUL4 associated factor 8 protein-coding 561_WT_peak_2427 chr15 38746234 38746713 + 134 NA intron (NM_173611, intron 1 of 7) CpG 145 NM_173611 283742 Hs.6799 NM_173611 FAM98B - family with sequence similarity 98, member B protein-coding 561_WT_peak_3776 chr19 42048449 42048673 + 134 NA Intergenic Intergenic 6701 NR_110724 101927931 Hs.158951 NR_110724 LINC01480 - long intergenic non-protein coding RNA 1480 ncRNA 561_WT_peak_5056 chr3 33482506 33482962 + 134 NA promoter-TSS (NM_001128161) promoter-TSS (NM_001128161) -837 NM_001128161 7342 Hs.729120 NM_014517 HPRD:10291 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 (LBP-1a) protein-coding 561_WT_peak_1405 chr11 72681003 72681353 + 134 NA intron (NM_014824, intron 8 of 19) intron (NM_014824, intron 8 of 19) 155727 NM_033388 89849 Hs.653186 NM_033388 HPRD:10959 ATG16L2 ATG16B|WDR80 autophagy related 16-like 2 (S. cerevisiae) protein-coding 561_WT_peak_716 chr1 209925135 209925521 + 134 NA Intergenic Intergenic -4049 NM_025228 80342 Hs.147434 NM_025228 HPRD:16305 TRAF3IP3 T3JAM TRAF3 interacting protein 3 protein-coding 561_WT_peak_7289 chr9 72374537 72374872 + 134 NA intron (NM_001099666, intron 1 of 7) CpG 172 NM_001099666 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 561_WT_peak_6204 chr6 27446522 27446822 + 134 NA Intergenic tRNA-Ser-TCY|tRNA|tRNA -5775 NM_007149 7738 Hs.158174 NM_007149 HPRD:03785 ZNF184 - zinc finger protein 184 protein-coding 561_WT_peak_4589 chr20 25677248 25677603 + 134 NA 5' UTR (NM_015655, exon 1 of 5) 5' UTR (NM_015655, exon 1 of 5) 115 NM_015655 26152 Hs.61881 NM_015655 HPRD:15779 ZNF337 - zinc finger protein 337 protein-coding 561_WT_peak_3335 chr17 73031087 73031359 + 134 NA intron (NR_110835, intron 2 of 7) tRNA-Arg-CGG|tRNA|tRNA 2561 NR_110835 23510 Hs.514468 NM_015353 HPRD:17176 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 561_WT_peak_3926 chr19 58459024 58459277 + 134 NA promoter-TSS (NM_005773) promoter-TSS (NM_005773) -73 NM_005773 10172 Hs.596242 NM_005773 HPRD:06095 ZNF256 BMZF-3|BMZF3 zinc finger protein 256 protein-coding 561_WT_peak_2324 chr14 90849655 90850492 + 134 NA Intergenic CpG -13254 NM_006888 801 Hs.282410 NM_006888 HPRD:00241 CALM1 CALML2|CAMI|CPVT4|DD132|PHKD|caM calmodulin 1 (phosphorylase kinase, delta) protein-coding 561_WT_peak_4212 chr2 96812048 96812334 + 134 NA Intergenic Intergenic -1012 NM_004418 1844 Hs.1183 NM_004418 HPRD:04348 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 561_WT_peak_2539 chr15 70391609 70391900 + 134 NA Intergenic CpG-8039 -1498 NM_001105192 7090 Hs.287362 NM_005078 HPRD:02558 TLE3 ESG|ESG3|GRG3|HsT18976 transducin-like enhancer of split 3 protein-coding 561_WT_peak_2725 chr16 21552000 21552398 + 134 NA Intergenic L1MB7|LINE|L1 -20434 NR_002594 387254 Hs.448808 NR_002594 SLC7A5P2 IMAA|MMAA solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 pseudo 561_WT_peak_7365 chr9 99180387 99180682 + 134 NA 5' UTR (NM_153695, exon 1 of 5) 5' UTR (NM_153695, exon 1 of 5) 135 NM_153695 195828 Hs.494557 NM_153695 HPRD:18330 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 561_WT_peak_1629 chr12 25538638 25539816 + 134 NA Intergenic CpG -135362 NM_033360 3845 Hs.505033 NM_004985 HPRD:01817 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RASK2 Kirsten rat sarcoma viral oncogene homolog protein-coding 561_WT_peak_4707 chr20 57606931 57607282 + 134 NA intron (NR_037929, intron 6 of 7) CpG 316 NM_006886 514 Hs.177530 NM_006886 ATP5E ATPE|MC5DN3 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit protein-coding 561_WT_peak_5203 chr3 111386737 111386986 + 134 NA Intergenic Intergenic -6662 NM_001185106 257068 Hs.477114 NM_153268 HPRD:07114 PLCXD2 - phosphatidylinositol-specific phospholipase C, X domain containing 2 protein-coding 561_WT_peak_3572 chr19 2552959 2553339 + 133 NA intron (NM_052847, intron 3 of 4) L1M4|LINE|L1 77026 NM_015675 4616 Hs.110571 NM_015675 HPRD:05382 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 561_WT_peak_6304 chr6 35436075 35436569 + 133 NA intron (NM_007104, intron 1 of 5) CpG 144 NM_007104 4736 Hs.148340 NM_007104 HPRD:10199 RPL10A CSA19|Csa-19|L10A|NEDD6 ribosomal protein L10a protein-coding 561_WT_peak_198 chr1 40974207 40974615 + 133 NA promoter-TSS (NM_022774) promoter-TSS (NM_022774) -22 NM_022774 64789 Hs.59584 NM_022774 HPRD:07955 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 561_WT_peak_328 chr1 94158860 94159120 + 133 NA intron (NM_001261408, intron 3 of 13) intron (NM_001261408, intron 3 of 13) -11596 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 561_WT_peak_693 chr1 204535074 204535304 + 133 NA Intergenic Intergenic 49682 NM_001278517 4194 Hs.497492 NM_002393 HPRD:04082 MDM4 HDMX|MDMX|MRP1 MDM4, p53 regulator protein-coding 561_WT_peak_5643 chr4 184365125 184366336 + 133 NA promoter-TSS (NM_017632) promoter-TSS (NM_017632) -59 NM_017632 55602 Hs.644077 NM_017632 HPRD:16683 CDKN2AIP CARF CDKN2A interacting protein protein-coding 561_WT_peak_3642 chr19 13056526 13056886 + 133 NA promoter-TSS (NM_001270363) promoter-TSS (NM_001270363) 78 NM_001270363 5886 Hs.643267 NM_005053 HPRD:07191 RAD23A HHR23A|HR23A RAD23 homolog A (S. cerevisiae) protein-coding 561_WT_peak_4460 chr2 208890207 208890723 + 133 NA promoter-TSS (NM_001080475) promoter-TSS (NM_001080475) -181 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing, family M, member 3 protein-coding 561_WT_peak_7755 chrY 59363138 59363465 + 133 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat -2447 NR_110561 727856 Hs.740212 NR_110561 DDX11L16 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16 pseudo 561_WT_peak_868 chr10 6317225 6317578 + 132 NA Intergenic Intergenic -51106 NR_040079 399715 NR_040079 ENSG00000215244 LOC399715 - uncharacterized LOC399715 ncRNA 561_WT_peak_4649 chr20 44600395 44600985 + 132 NA intron (NM_022095, intron 1 of 27) CpG-16708 143 NM_022095 63925 Hs.174193 NM_022095 HPRD:11709 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 561_WT_peak_3588 chr19 5622586 5622919 + 132 NA promoter-TSS (NM_001201340) promoter-TSS (NM_001201340) 186 NM_014649 9667 Hs.655392 NM_014649 HPRD:06424 SAFB2 - scaffold attachment factor B2 protein-coding 561_WT_peak_1163 chr10 125919450 125919758 + 132 NA Intergenic Intergenic -66481 NM_001270765 51363 Hs.287537 NM_014863 HPRD:12203 CHST15 BRAG|GALNAC4S-6ST carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 protein-coding 561_WT_peak_3306 chr17 62971882 62972172 + 132 NA promoter-TSS (NR_026903) promoter-TSS (NR_026903) -324 NR_026903 201283 Hs.396447 NM_153032 HPRD:08720 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 561_WT_peak_3032 chr17 8042433 8042906 + 132 NA Intergenic Intergenic 5720 NR_106943 102465532 NR_106943 MIR6883 hsa-mir-6883 microRNA 6883 ncRNA 561_WT_peak_3343 chr17 73663417 73663712 + 132 NA promoter-TSS (NM_004259) promoter-TSS (NM_004259) 165 NM_013260 29115 Hs.655088 NM_013260 HPRD:17094 SAP30BP HCNGP|HTRG|HTRP SAP30 binding protein protein-coding 561_WT_peak_3311 chr17 63177385 63177762 + 132 NA intron (NM_003835, intron 9 of 18) intron (NM_003835, intron 9 of 18) 44117 NM_001081955 8787 Hs.664380 NM_003835 HPRD:04962 RGS9 PERRS|RGS9L regulator of G-protein signaling 9 protein-coding 561_WT_peak_6252 chr6 29895064 29895246 + 132 NA promoter-TSS (NR_001317).7 promoter-TSS (NR_001317).7 -163 NR_001317 80868 Hs.661198 NR_001317 HCG4B HCG4P6|HCGIV-06|HCGIV-6|HCGIV.5|bCX67J3.3|bPG309N1.1|bQB90C11.3 HLA complex group 4B (non-protein coding) ncRNA 561_WT_peak_7447 chr9 131873746 131873997 + 132 NA promoter-TSS (NM_001257363) promoter-TSS (NM_001257363) -96 NM_001193397 5524 Hs.400740 NM_021131 HPRD:02858 PPP2R4 PP2A|PR53|PTPA protein phosphatase 2A activator, regulatory subunit 4 protein-coding 561_WT_peak_2729 chr16 21964440 21964968 + 132 NA promoter-TSS (NM_003366) promoter-TSS (NM_003366) 95 NM_003366 7385 Hs.528803 NM_003366 HPRD:01876 UQCRC2 MC3DN5|QCR2|UQCR2 ubiquinol-cytochrome c reductase core protein II protein-coding 561_WT_peak_441 chr1 145396749 145397293 + 132 NA intron (NM_001039703, intron 68 of 85) intron (NM_001039703, intron 68 of 85) -16170 NM_213653 148738 Hs.632436 NM_145277 HPRD:10521 HFE2 HFE2A|HJV|JH|RGMC hemochromatosis type 2 (juvenile) protein-coding 561_WT_peak_7539 chrX 48541980 48542207 + 132 NA promoter-TSS (NM_000377) promoter-TSS (NM_000377) -93 NM_000377 7454 Hs.2157 NM_000377 HPRD:02314 WAS IMD2|SCNX|THC|THC1|WASP Wiskott-Aldrich syndrome protein-coding 561_WT_peak_6666 chr7 45025937 45026247 + 132 NA promoter-TSS (NR_002952) promoter-TSS (NR_002952) 167 NR_003697 285958 Hs.25892 NR_003697 ENSG00000232956 SNHG15 C7orf40|Linc-Myo1g|MYO1GUT small nucleolar RNA host gene 15 (non-protein coding) ncRNA 561_WT_peak_1180 chr11 506207 506805 + 132 NA intron (NM_203387, intron 1 of 10) CpG 315 NM_203383 6050 Hs.530687 NM_002939 HPRD:01412 RNH1 RAI|RNH ribonuclease/angiogenin inhibitor 1 protein-coding 561_WT_peak_2935 chr16 87417489 87417762 + 132 NA promoter-TSS (NM_024735) promoter-TSS (NM_024735) -226 NM_024735 79791 Hs.567582 NM_024735 FBXO31 FBX14|FBXO14|Fbx31|pp2386 F-box protein 31 protein-coding 561_WT_peak_724 chr1 212740265 212740586 + 132 NA intron (NM_001030287, intron 1 of 3) intron (NM_001030287, intron 1 of 3) 1749 NM_001030287 467 Hs.460 NM_001674 HPRD:04395 ATF3 - activating transcription factor 3 protein-coding 561_WT_peak_6041 chr5 178977306 178977720 + 132 NA promoter-TSS (NM_025158) promoter-TSS (NM_025158) -49 NM_025158 80230 Hs.306769 NM_025158 HPRD:15282 RUFY1 RABIP4|ZFYVE12 RUN and FYVE domain containing 1 protein-coding 561_WT_peak_1071 chr10 81076421 81076705 + 132 NA TTS (NM_020338) TTS (NM_020338) -30657 NM_005729 10105 Hs.381072 NM_005729 HPRD:06839 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 561_WT_peak_2847 chr16 53737830 53738328 + 132 NA promoter-TSS (NM_001127897) promoter-TSS (NM_001127897) 204 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 561_WT_peak_7493 chrX 1581838 1582165 + 132 NA 3' UTR (NM_178129, exon 2 of 2) 3' UTR (NM_178129, exon 2 of 2) -9346 NM_001173473 8623 Hs.533514 NM_004192 HPRD:02156 ASMTL ASMTLX|ASMTLY|ASTML acetylserotonin O-methyltransferase-like protein-coding 561_WT_peak_3720 chr19 34663432 34663912 + 132 NA intron (NM_015578, intron 1 of 9) CpG 320 NM_001114093 26065 Hs.744009 NM_015578 HPRD:12697 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, SCD6 homolog A (S. cerevisiae) protein-coding 561_WT_peak_7626 chrX 153438112 153438814 + 132 NA Intergenic AluJb|SINE|Alu -9622 NM_000513 2652 Hs.247787 NM_000513 OPN1MW CBBM|CBD|COD5|GCP|GOP|OPN1MW1 opsin 1 (cone pigments), medium-wave-sensitive protein-coding 561_WT_peak_5400 chr4 3956923 3957193 + 132 NA promoter-TSS (NR_024253) promoter-TSS (NR_024253) 90 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 561_WT_peak_2939 chr16 87812827 87813047 + 132 NA promoter-TSS (NR_120309) promoter-TSS (NR_120309) -183 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 561_WT_peak_5637 chr4 169930781 169931176 + 132 NA intron (NM_032783, intron 1 of 4) CpG 490 NM_032783 84869 Hs.659311 NM_032783 HPRD:07859 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 561_WT_peak_123 chr1 26947169 26947686 + 132 NA Intergenic CpG 66394 NR_031740 100302190 NR_031740 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 561_WT_peak_4422 chr2 198318240 198318723 + 131 NA intron (NM_025147, intron 1 of 4) CpG 250 NM_025147 80219 Hs.606592 NM_025147 HPRD:08582 COQ10B - coenzyme Q10 homolog B (S. cerevisiae) protein-coding 561_WT_peak_4391 chr2 190305860 190306414 + 131 NA promoter-TSS (NM_032168) promoter-TSS (NM_032168) -22 NM_032168 84128 Hs.399984 NM_032168 HPRD:07775 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 561_WT_peak_1592 chr12 10573098 10573245 + 131 NA promoter-TSS (NM_007333) promoter-TSS (NM_007333) 23 NM_007333 3823 Hs.654362 NM_002261 HPRD:04203 KLRC3 NKG2-E|NKG2E killer cell lectin-like receptor subfamily C, member 3 protein-coding 561_WT_peak_4122 chr2 69664242 69664694 + 131 NA 5' UTR (NM_015700, exon 1 of 8) 5' UTR (NM_015700, exon 1 of 8) 292 NM_001002756 27247 Hs.430439 NM_015700 HPRD:12163 NFU1 HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 561_WT_peak_187 chr1 38455624 38455872 + 131 NA promoter-TSS (NM_006802) promoter-TSS (NM_006802) 13 NM_006802 10946 Hs.77897 NM_006802 HPRD:10411 SF3A3 PRP9|PRPF9|SAP61|SF3a60 splicing factor 3a, subunit 3, 60kDa protein-coding 561_WT_peak_1576 chr12 9102613 9102836 + 131 NA promoter-TSS (NM_002355) promoter-TSS (NM_002355) -367 NM_002355 4074 Hs.134084 NM_002355 HPRD:01106 M6PR CD-MPR|MPR 46|MPR-46|MPR46|SMPR mannose-6-phosphate receptor (cation dependent) protein-coding 561_WT_peak_851 chr10 3852553 3852938 + 131 NA Intergenic Intergenic -25272 NM_001160124 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 561_WT_peak_3263 chr17 56407434 56407896 + 131 NA TTS (NR_029683) TTS (NR_029683) 699 NR_038413 100506779 Hs.718477 NR_038410 ENSG00000265148 BZRAP1-AS1 - BZRAP1 antisense RNA 1 ncRNA 561_WT_peak_4993 chr3 5020553 5020947 + 131 NA promoter-TSS (NM_003670) promoter-TSS (NM_003670) -347 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 561_WT_peak_844 chr10 3214524 3215014 + 130 NA intron (NM_014889, intron 1 of 26) CpG 264 NM_014889 10531 Hs.528300 NM_014889 HPRD:07142 PITRM1 MP1|PreP pitrilysin metallopeptidase 1 protein-coding 561_WT_peak_5677 chr5 32174064 32174707 + 130 NA promoter-TSS (NM_022130) promoter-TSS (NM_022130) 40 NM_022130 64083 Hs.408909 NM_022130 HPRD:11007 GOLPH3 GOPP1|GPP34|MIDAS golgi phosphoprotein 3 (coat-protein) protein-coding 561_WT_peak_2160 chr14 31596958 31597236 + 130 NA exon (NM_015382, exon 26 of 43) exon (NM_015382, exon 26 of 43) 79632 NM_015382 25831 Hs.708017 NM_015382 HPRD:17098 HECTD1 EULIR HECT domain containing E3 ubiquitin protein ligase 1 protein-coding 561_WT_peak_3210-2 chr17 44271942 44272314 + 130 NA intron (NR_034172, intron 1 of 1) intron (NR_034172, intron 1 of 1) 1189 NR_034172 644246 Hs.644600 NR_034172 ENSG00000214401 KANSL1-AS1 - KANSL1 antisense RNA 1 ncRNA 561_WT_peak_4873 chr22 30163192 30163638 + 130 NA promoter-TSS (NM_013387) promoter-TSS (NM_013387) 57 NM_001003684 29796 Hs.284292 NM_013387 HPRD:13691 UQCR10 HSPC051|HSPC151|QCR9|UCCR7.2|UCRC ubiquinol-cytochrome c reductase, complex III subunit X protein-coding 561_WT_peak_3210 chr17 44271629 44271780 + 130 NA intron (NR_034172, intron 1 of 1) intron (NR_034172, intron 1 of 1) 765 NR_034172 644246 Hs.644600 NR_034172 ENSG00000214401 KANSL1-AS1 - KANSL1 antisense RNA 1 ncRNA 561_WT_peak_5806 chr5 72456028 72456362 + 130 NA Intergenic Intergenic -12828 NM_153217 134288 Hs.508588 NM_153217 HPRD:14432 TMEM174 - transmembrane protein 174 protein-coding 561_WT_peak_3797 chr19 45942878 45943243 + 130 NA Intergenic CpG -15883 NM_001166049 2067 Hs.435981 NM_001983 HPRD:00533 ERCC1 COFS4|RAD10|UV20 excision repair cross-complementation group 1 protein-coding 561_WT_peak_610 chr1 168482651 168482891 + 130 NA Intergenic Intergenic 30464 NM_003175 6846 Hs.458346 NM_003175 HPRD:05317 XCL2 SCM-1b|SCM1B|SCYC2 chemokine (C motif) ligand 2 protein-coding 561_WT_peak_819 chr1 243418190 243418660 + 130 NA promoter-TSS (NM_006642) promoter-TSS (NM_006642) 283 NM_001042405 9859 Hs.533635 NM_014812 HPRD:17172 CEP170 FAM68A|KAB|KIAA0470 centrosomal protein 170kDa protein-coding 561_WT_peak_1357 chr11 65265234 65265461 + 130 NA non-coding (NR_002819, exon 1 of 1) non-coding (NR_002819, exon 1 of 1) 114 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 561_WT_peak_2397 chr14 106873598 106873788 + 130 NA Intergenic Intergenic -64752 NR_027457 338005 Hs.322826 NR_027457 ENSG00000187156 LINC00221 C14orf98|NCRNA00221 long intergenic non-protein coding RNA 221 ncRNA 561_WT_peak_6935 chr8 19333002 19333350 + 130 NA intron (NR_024040, intron 3 of 9) intron (NR_024040, intron 3 of 9) 126880 NM_001130518 55790 Hs.613729 NM_018371 HPRD:13114 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 561_WT_peak_6952 chr8 27631610 27631979 + 130 NA promoter-TSS (NM_001017420) promoter-TSS (NM_001017420) -264 NM_001017420 157570 Hs.99480 NM_001017420 HPRD:18564 ESCO2 2410004I17Rik|EFO2|RBS establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 561_WT_peak_107 chr1 24968948 24969440 + 130 NA promoter-TSS (NM_005839) promoter-TSS (NM_005839) -400 NM_005839 10250 Hs.18192 NM_005839 HPRD:10441 SRRM1 160-KD|POP101|SRM160 serine/arginine repetitive matrix 1 protein-coding 561_WT_peak_5930 chr5 134240616 134241419 + 130 NA intron (NM_032151, intron 1 of 3) CpG 207 NM_032151 84105 Hs.710014 NM_032151 PCBD2 DCOH2|DCOHM|PHS2 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 protein-coding 561_WT_peak_6142 chr6 26045594 26046204 + 130 NA exon (NM_003531, exon 1 of 1) exon (NM_003531, exon 1 of 1) 260 NM_003531 8352 Hs.248176 NM_003531 HPRD:11906 HIST1H3C H3.1|H3/c|H3FC histone cluster 1, H3c protein-coding 561_WT_peak_5996 chr5 156698724 156699304 + 130 NA intron (NM_014376, intron 1 of 30) intron (NM_014376, intron 1 of 30) 2662 NM_014376 26999 Hs.519702 NM_014376 HPRD:07556 CYFIP2 PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 561_WT_peak_3522 chr18 60867435 60867689 + 130 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 119051 NM_000633 596 Hs.150749 NM_000633 HPRD:01045 BCL2 Bcl-2|PPP1R50 B-cell CLL/lymphoma 2 protein-coding 561_WT_peak_6799 chr7 104585022 104585848 + 130 NA Intergenic Intergenic -18343 NR_027374 723809 Hs.124316 NR_027374 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 561_WT_peak_6005 chr5 158839338 158839668 + 130 NA Intergenic Intergenic 53781 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 561_WT_peak_3195 chr17 41561004 41561454 + 130 NA promoter-TSS (NM_004941) promoter-TSS (NM_004941) -105 NM_004941 1659 Hs.463105 NM_004941 HPRD:02672 DHX8 DDX8|HRH1|PRP22|PRPF22 DEAH (Asp-Glu-Ala-His) box polypeptide 8 protein-coding 561_WT_peak_783 chr1 228779466 228779659 + 130 NA promoter-TSS (NR_037962) promoter-TSS (NR_037962) -832 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_4010 chr2 28974831 28975180 + 130 NA exon (NM_206876, exon 2 of 9) exon (NM_206876, exon 2 of 9) 379 NM_002709 5500 Hs.702907 NM_002709 HPRD:11792 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1, catalytic subunit, beta isozyme protein-coding 561_WT_peak_2471 chr15 48469922 48470510 + 130 NA intron (NR_125408, intron 1 of 8) CpG 342 NR_125408 50804 Hs.6638 NM_016132 HPRD:14794 MYEF2 HsT18564|MEF-2|MST156|MSTP156|myEF-2 myelin expression factor 2 protein-coding 561_WT_peak_1878 chr12 120632493 120632904 + 130 NA promoter-TSS (NM_006836) promoter-TSS (NM_006836) -185 NM_006836 10985 Hs.298716 NM_006836 HPRD:16127 GCN1L1 GCN1|GCN1L|PRIC295 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) protein-coding 561_WT_peak_6797 chr7 104583938 104584328 + 130 NA Intergenic Intergenic -17041 NR_027374 723809 Hs.124316 NR_027374 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 561_WT_peak_1698 chr12 51441708 51441988 + 129 NA promoter-TSS (NR_045017) promoter-TSS (NR_045017) -234 NR_045019 25875 Hs.655272 NM_015416 HPRD:09978 LETMD1 1110019O13Rik|HCCR-1|HCCR-2|HCCR1|HCRR-2 LETM1 domain containing 1 protein-coding 561_WT_peak_5988 chr5 151150326 151151001 + 129 NA promoter-TSS (NM_198395) promoter-TSS (NM_198395) 406 NM_001278082 100652758 Hs.646665 NM_001278082 LOC100652758 - uncharacterized LOC100652758 protein-coding 561_WT_peak_2473 chr15 49170001 49170821 + 129 NA exon (NM_014335, exon 1 of 1) exon (NM_014335, exon 1 of 1) 121 NM_014335 23741 Hs.255973 NM_014335 HPRD:06907 EID1 C15orf3|CRI1|EID-1|IRO45620|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 561_WT_peak_2528 chr15 67413566 67413802 + 129 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -4370 NM_001145102 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 561_WT_peak_5653 chr4 186346752 186347289 + 129 NA exon (NM_018359, exon 1 of 12) exon (NM_018359, exon 1 of 12) 119 NR_028085 55325 Hs.713548 NM_018359 UFSP2 C4orf20 UFM1-specific peptidase 2 protein-coding 561_WT_peak_4933 chr22 41252710 41252995 + 129 NA promoter-TSS (NM_001204827) promoter-TSS (NM_001204827) 160 NM_003932 6767 Hs.712713 NM_003932 HPRD:08426 ST13 AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) protein-coding 561_WT_peak_2745 chr16 25269399 25269748 + 129 NA promoter-TSS (NM_001012981) promoter-TSS (NM_001012981) -718 NM_001012981 342357 Hs.513451 NM_001012981 HPRD:11268 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 561_WT_peak_5562 chr4 102436908 102437111 + 129 NA Intergenic MIRb|SINE|MIR 168075 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 561_WT_peak_6611 chr7 22862650 22862860 + 129 NA promoter-TSS (NM_019059) promoter-TSS (NM_019059) -284 NM_019059 54543 Hs.112318 NM_019059 HPRD:16266 TOMM7 TOM7 translocase of outer mitochondrial membrane 7 homolog (yeast) protein-coding 561_WT_peak_1136 chr10 104404456 104404947 + 129 NA exon (NM_030912, exon 1 of 6) exon (NM_030912, exon 1 of 6) 449 NM_030912 81603 Hs.336810 NM_030912 HPRD:06934 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 561_WT_peak_2890 chr16 70380397 70380969 + 129 NA promoter-TSS (NM_018332) promoter-TSS (NM_018332) -33 NR_039997 100506083 Hs.635008 NR_039997 ENSG00000261777 LOC100506083 - uncharacterized LOC100506083 ncRNA 561_WT_peak_7097 chr8 103424613 103424984 + 129 NA 5' UTR (NM_001282873, exon 1 of 59) 5' UTR (NM_001282873, exon 1 of 59) 119 NM_001282873 51366 Hs.492445 NM_015902 HPRD:06436 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 561_WT_peak_1928 chr12 133021456 133021827 + 129 NA Intergenic Intergenic -45516 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin-like 1 protein-coding 561_WT_peak_5126 chr3 53164290 53164864 + 129 NA promoter-TSS (NM_052859) promoter-TSS (NM_052859) -107 NM_052859 91869 Hs.631910 NM_052859 HPRD:15239 RFT1 CDG1N RFT1 homolog (S. cerevisiae) protein-coding 561_WT_peak_918 chr10 25305733 25305923 + 129 NA promoter-TSS (NM_145010) promoter-TSS (NM_145010) 320 NM_024838 79896 Hs.645274 NM_024838 HPRD:07974 THNSL1 TSH1 threonine synthase-like 1 (S. cerevisiae) protein-coding 561_WT_peak_308 chr1 89149515 89149894 + 129 NA promoter-TSS (NM_006256) promoter-TSS (NM_006256) -218 NM_006256 5586 Hs.440833 NM_006256 HPRD:03972 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 561_WT_peak_1555 chr12 4381428 4382133 + 129 NA intron (NR_125790, intron 1 of 1) CpG -1122 NM_001759 894 Hs.376071 NM_001759 HPRD:00451 CCND2 KIAK0002 cyclin D2 protein-coding 561_WT_peak_120 chr1 26705012 26705223 + 129 NA Intergenic Intergenic -5851 NM_173574 257101 Hs.353208 NM_173574 HPRD:14563 ZNF683 - zinc finger protein 683 protein-coding 561_WT_peak_4650 chr20 44718347 44718720 + 129 NA promoter-TSS (NM_020967) promoter-TSS (NM_020967) 47 NM_020967 57727 Hs.654991 NM_020967 HPRD:14813 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 561_WT_peak_6374 chr6 74405395 74405797 + 129 NA promoter-TSS (NM_001159587) promoter-TSS (NM_001159587) -212 NM_001159587 135228 Hs.399891 NM_133493 HPRD:10590 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 561_WT_peak_2705 chr16 14797089 14797330 + 129 NA Intergenic CpG -8337 NM_001277324 642799 NM_001277324 ENSG00000254852 NPIPA2 NPIP nuclear pore complex interacting protein family, member A2 protein-coding 561_WT_peak_1833 chr12 104680629 104681116 + 129 NA 5' UTR (NM_182729, exon 1 of 15) 5' UTR (NM_182729, exon 1 of 15) 412 NM_182729 7296 Hs.654922 NM_003330 HPRD:03068 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 561_WT_peak_1333 chr11 64546581 64547198 + 129 NA promoter-TSS (NM_004630) promoter-TSS (NM_004630) -573 NM_201995 7536 Hs.502829 NM_004630 HPRD:03306 SF1 BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162 splicing factor 1 protein-coding 561_WT_peak_5877 chr5 112196597 112196908 + 129 NA promoter-TSS (NM_003135) promoter-TSS (NM_003135) -133 NM_001204193 6728 Hs.637001 NM_003135 SRP19 - signal recognition particle 19kDa protein-coding 561_WT_peak_2412 chr15 26327289 26327589 + 129 NA Intergenic tRNA-Glu-GAG_|tRNA|tRNA -33521 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 561_WT_peak_102 chr1 24069956 24070266 + 129 NA intron (NM_003198, intron 1 of 10) CpG 255 NM_003198 6924 Hs.15535 NM_003198 HPRD:02873 TCEB3 EloA|SIII|SIII p110|TCEB3A transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) protein-coding 561_WT_peak_3008 chr17 7118330 7118568 + 129 NA intron (NM_001365, intron 3 of 21) intron (NM_001365, intron 3 of 21) -1995 NM_001270447 37 Hs.437178 NM_000018 HPRD:01940 ACADVL ACAD6|LCACD|VLCAD acyl-CoA dehydrogenase, very long chain protein-coding 561_WT_peak_4101 chr2 64441600 64441962 + 129 NA Intergenic Intergenic -9162 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 561_WT_peak_4540 chr20 1447104 1447678 + 129 NA exon (NM_001206736, exon 1 of 9) exon (NM_001206736, exon 1 of 9) 946 NM_016143 55968 Hs.12865 NM_016143 HPRD:09425 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 (p97) cofactor (p47) protein-coding 561_WT_peak_3963 chr2 10760692 10760885 + 129 NA intron (NR_048552, intron 12 of 19) intron (NR_048552, intron 12 of 19) 69325 NM_024894 79954 Hs.222494 NM_024894 HPRD:07849 NOL10 PQBP5 nucleolar protein 10 protein-coding 561_WT_peak_1378 chr11 66115523 66115799 + 129 NA promoter-TSS (NM_006876) promoter-TSS (NM_006876) -500 NM_006876 11041 Hs.8526 NM_006876 HPRD:09270 B3GNT1 B3GN-T1|B3GNT6|BETA3GNTI|MDDGA13|iGAT|iGNT UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 protein-coding 561_WT_peak_2518 chr15 66084819 66085123 + 129 NA promoter-TSS (NM_005848) promoter-TSS (NM_005848) -340 NM_001144823 10260 Hs.654567 NM_005848 HPRD:02662 DENND4A IRLB|MYCPBP DENN/MADD domain containing 4A protein-coding 561_WT_peak_2013 chr13 42535078 42535573 + 129 NA promoter-TSS (NR_039974) promoter-TSS (NR_039974) 20 NR_039974 100507240 Hs.147766 NR_039974 VWA8-AS1 - VWA8 antisense RNA 1 (head to head) ncRNA 561_WT_peak_6546 chr6 160147810 160148284 + 129 NA promoter-TSS (NM_004906) promoter-TSS (NM_004906) 17 NM_152858 9589 Hs.446091 NM_004906 HPRD:09259 WTAP - Wilms tumor 1 associated protein protein-coding 561_WT_peak_1621 chr12 14956212 14956436 + 129 NA promoter-TSS (NM_016312) promoter-TSS (NM_016312) 77 NM_016312 51729 Hs.655138 NM_016312 HPRD:18293 WBP11 NPWBP|PPP1R165|SIPP1|WBP-11 WW domain binding protein 11 protein-coding 561_WT_peak_4816 chr21 44527219 44527739 + 129 NA intron (NM_001025203, intron 1 of 7) CpG 209 NM_006758 7307 Hs.365116 NM_006758 HPRD:01871 U2AF1 FP793|RN|RNU2AF1|U2AF35|U2AFBP U2 small nuclear RNA auxiliary factor 1 protein-coding 561_WT_peak_4296 chr2 130939318 130939541 + 129 NA promoter-TSS (NM_001171083) promoter-TSS (NM_001171083) -72 NM_025029 80097 Hs.469925 NM_025029 HPRD:07857 MZT2B FAM128B|MOZART2B mitotic spindle organizing protein 2B protein-coding 561_WT_peak_7103 chr8 103876001 103876539 + 129 NA 5' UTR (NM_148174, exon 1 of 12) 5' UTR (NM_148174, exon 1 of 12) 127 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 561_WT_peak_6514 chr6 149866909 149867487 + 129 NA promoter-TSS (NM_139126) promoter-TSS (NM_139126) 40 NM_139126 85313 Hs.744238 NM_139126 HPRD:07606 PPIL4 HDCME13P peptidylprolyl isomerase (cyclophilin)-like 4 protein-coding 561_WT_peak_4720 chr20 61733542 61733957 + 129 NA promoter-TSS (NR_003245) promoter-TSS (NR_003245) -78 NR_003245 768097 Hs.635159 NR_003245 ENSG00000231133 HAR1B HAR1R|LINC00065|NCRNA00065 highly accelerated region 1B (non-protein coding) ncRNA 561_WT_peak_3054 chr17 16593273 16593553 + 129 NA promoter-TSS (NM_014695) promoter-TSS (NM_014695) -226 NM_014695 9720 Hs.745246 NM_014695 ENSG00000170160 CCDC144A - coiled-coil domain containing 144A protein-coding 561_WT_peak_7482 chr9 139294629 139294866 + 129 NA Intergenic CpG -1858 NM_003086 6621 Hs.113265 NM_003086 HPRD:04146 SNAPC4 PTFalpha|SNAP190 small nuclear RNA activating complex, polypeptide 4, 190kDa protein-coding 561_WT_peak_2314 chr14 81687468 81687973 + 129 NA promoter-TSS (NM_015859) promoter-TSS (NM_015859) -145 NM_201595 2957 Hs.592334 NM_015859 HPRD:02748 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA, 1, 19/37kDa protein-coding 561_WT_peak_4330 chr2 152145803 152146651 + 129 NA 5' UTR (NM_004688, exon 1 of 8) 5' UTR (NM_004688, exon 1 of 8) 203 NM_004688 9111 Hs.54483 NM_004688 HPRD:04632 NMI - N-myc (and STAT) interactor protein-coding 561_WT_peak_2321 chr14 90722760 90723303 + 129 NA intron (NM_002802, intron 1 of 10) CpG 137 NM_002802 5700 Hs.356654 NM_002802 HPRD:04084 PSMC1 P26S4|S4|p56 proteasome (prosome, macropain) 26S subunit, ATPase, 1 protein-coding 561_WT_peak_4832 chr22 19109689 19109916 + 129 NA non-coding (NR_033674, exon 1 of 9) non-coding (NR_033674, exon 1 of 9) 165 NR_033674 9993 Hs.517357 NM_005137 HPRD:08999 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 561_WT_peak_1089 chr10 91093694 91094035 + 129 NA intron (NM_001031683, intron 1 of 1) intron (NM_001031683, intron 1 of 1) 1628 NM_001031683 3437 Hs.47338 NM_001549 HPRD:05228 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G interferon-induced protein with tetratricopeptide repeats 3 protein-coding 561_WT_peak_2990 chr17 4607077 4607825 + 129 NA promoter-TSS (NR_103482) promoter-TSS (NR_103482) -74 NR_103482 101559451 Hs.634966 NR_103482 ENSG00000244184 LOC101559451 - uncharacterized LOC101559451 ncRNA 561_WT_peak_7393 chr9 114800060 114800365 + 129 NA intron (NR_036085, intron 3 of 3) intron (NR_036085, intron 3 of 3) 105832 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 561_WT_peak_2666 chr16 3124969 3125619 + 128 NA Intergenic Intergenic 9509 NM_001012636 9235 Hs.943 NM_004221 HPRD:09346 IL32 IL-32alpha|IL-32beta|IL-32delta|IL-32gamma|NK4|TAIF|TAIFa|TAIFb|TAIFc|TAIFd interleukin 32 protein-coding 561_WT_peak_7362 chr9 98778276 98778871 + 128 NA 3' UTR (NM_020207, exon 19 of 19) 3' UTR (NM_020207, exon 19 of 19) 5464 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092|bA346B7.1 long intergenic non-protein coding RNA 92 ncRNA 561_WT_peak_3465 chr18 21509613 21509866 + 128 NA intron (NM_198129, intron 64 of 74) intron (NM_198129, intron 64 of 74) 56755 NM_000227 3909 Hs.436367 NM_000227 HPRD:02883 LAMA3 BM600|E170|LAMNA|LOCS|lama3a laminin, alpha 3 protein-coding 561_WT_peak_3535 chr18 76828547 76829000 + 128 NA promoter-TSS (NM_198531) promoter-TSS (NM_198531) -624 NM_198531 374868 Hs.465475 NM_198531 HPRD:16528 ATP9B ATPASEP|ATPIIB|NEO1L|hMMR1 ATPase, class II, type 9B protein-coding 561_WT_peak_6541 chr6 159291044 159291336 + 128 NA Intergenic CpG -12526 NR_028496 202459 Hs.487035 NM_145303 HPRD:14130 OSTCP1 DC2L|OSTCL oligosaccharyltransferase complex subunit pseudogene 1 pseudo 561_WT_peak_7042 chr8 67445864 67446152 + 128 NA Intergenic Intergenic 40517 NM_152765 254778 Hs.268869 NM_152765 HPRD:14565 C8orf46 - chromosome 8 open reading frame 46 protein-coding 561_WT_peak_5100 chr3 48955834 48956173 + 128 NA promoter-TSS (NM_006321) promoter-TSS (NM_006321) -278 NM_006321 10425 Hs.633601 NM_006321 HPRD:09286 ARIH2 ARI2|TRIAD1 ariadne RBR E3 ubiquitin protein ligase 2 protein-coding 561_WT_peak_4747 chr21 15918423 15918817 + 128 NA promoter-TSS (NM_001286523) promoter-TSS (NM_001286523) 61 NM_001286523 64092 Hs.473341 NM_022136 HPRD:06413 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 561_WT_peak_6027 chr5 175080177 175080542 + 128 NA Intergenic Intergenic -4681 NM_001131055 3274 Hs.247885 NM_022304 HPRD:00816 HRH2 H2R histamine receptor H2 protein-coding 561_WT_peak_1912 chr12 123942587 123943009 + 128 NA intron (NR_104103, intron 1 of 1) CpG 147 NM_022717 11066 Hs.632738 NM_007020 SNRNP35 HM-1|U1SNRNPBP small nuclear ribonucleoprotein 35kDa (U11/U12) protein-coding 561_WT_peak_348 chr1 108113180 108113530 + 128 NA TTS (NM_001079874) TTS (NM_001079874) 117771 NM_001079874 10451 Hs.267659 NM_006113 HPRD:05706 VAV3 - vav 3 guanine nucleotide exchange factor protein-coding 561_WT_peak_6311 chr6 37150856 37151356 + 128 NA Intergenic Intergenic 13184 NM_001243186 5292 Hs.81170 NM_002648 HPRD:01292 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 561_WT_peak_491 chr1 149783535 149783975 + 127 NA exon (NM_001161334, exon 1 of 2) exon (NM_001161334, exon 1 of 2) 173 NM_001161334 440689 Hs.632451 NM_001024599 HPRD:18639 HIST2H2BF - histone cluster 2, H2bf protein-coding 561_WT_peak_1223 chr11 17098931 17099806 + 127 NA promoter-TSS (NM_001017) promoter-TSS (NM_001017) -148 NM_001017 6207 Hs.446588 NM_001017 HPRD:01604 RPS13 S13 ribosomal protein S13 protein-coding 561_WT_peak_4497 chr2 233414912 233415669 + 127 NA promoter-TSS (NR_049797) promoter-TSS (NR_049797) -7 NR_049797 100847037 NR_049797 miRBase:MI0017867 MIR5001 - microRNA 5001 ncRNA 561_WT_peak_2999 chr17 5094897 5095188 + 127 NA promoter-TSS (NR_034082) promoter-TSS (NR_034082) 136 NM_032530 84622 Hs.658402 NM_032530 ENSG00000180626 ZNF594 - zinc finger protein 594 protein-coding 561_WT_peak_67 chr1 14056855 14057765 + 127 NA intron (NM_001135610, intron 2 of 7) intron (NM_001135610, intron 2 of 7) -18566 NM_001007257 7799 Hs.371823 NM_012231 HPRD:03120 PRDM2 HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2 PR domain containing 2, with ZNF domain protein-coding 561_WT_peak_135 chr1 28051920 28052195 + 127 NA promoter-TSS (NM_001143914) promoter-TSS (NM_001143914) -433 NM_152660 199870 Hs.469359 NM_152660 HPRD:14583 FAM76A - family with sequence similarity 76, member A protein-coding 561_WT_peak_2964 chr17 685201 685545 + 127 NA promoter-TSS (NM_018146) promoter-TSS (NM_018146) -140 NM_018146 55178 Hs.182729 NM_018146 HPRD:15266 RNMTL1 - RNA methyltransferase like 1 protein-coding 561_WT_peak_5268 chr3 135969192 135969416 + 127 NA exon (NM_001178014, exon 1 of 16) exon (NM_001178014, exon 1 of 16) 137 NM_001178014 5096 Hs.63788 NM_000532 HPRD:01982 PCCB - propionyl CoA carboxylase, beta polypeptide protein-coding 561_WT_peak_6491 chr6 138036889 138037197 + 127 NA Intergenic MIR|SINE|MIR 23131 NR_121618 100507406 Hs.556703 NR_121618 ENSG00000234956 LOC100507406 - uncharacterized LOC100507406 ncRNA 561_WT_peak_6062 chr5 180648927 180649600 + 127 NA promoter-TSS (NM_201627) promoter-TSS (NM_201627) 370 NR_039781 100616342 NR_039781 miRBase:MI0017265 MIR4638 - microRNA 4638 ncRNA 561_WT_peak_1792 chr12 90257211 90257559 + 127 NA Intergenic Intergenic 154653 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 - long intergenic non-protein coding RNA 936 ncRNA 561_WT_peak_2372 chr14 102290986 102291468 + 127 NA intron (NM_001161725, intron 3 of 15) intron (NM_001161725, intron 3 of 15) 15087 NM_178587 5527 Hs.368264 NM_002719 HPRD:03385 PPP2R5C B56G|PR61G protein phosphatase 2, regulatory subunit B', gamma protein-coding 561_WT_peak_1164 chr10 126377394 126377766 + 127 NA intron (NM_014661, intron 3 of 4) intron (NM_014661, intron 3 of 4) -15017 NR_120631 101927944 Hs.437448 NR_120630 FAM53B-AS1 - FAM53B antisense RNA 1 ncRNA 561_WT_peak_5112 chr3 50387915 50388218 + 127 NA promoter-TSS (NM_007022) promoter-TSS (NM_007022) -60 NM_007022 11068 Hs.149443 NM_007022 HPRD:06143 CYB561D2 101F6|TSP10|XXcos-LUCA11.4 cytochrome b561 family, member D2 protein-coding 561_WT_peak_780 chr1 228770571 228770936 + 127 NA Intergenic CpG -9641 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_4134 chr2 70417591 70418068 + 127 NA intron (NM_017880, intron 1 of 9) CpG 322 NM_017880 54980 Hs.720049 NM_017880 HPRD:07927 C2orf42 - chromosome 2 open reading frame 42 protein-coding 561_WT_peak_7300 chr9 74979551 74980077 + 127 NA promoter-TSS (NM_001278243) promoter-TSS (NM_001278243) -306 NM_001278244 7763 Hs.406096 NM_006007 HPRD:05302 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger, AN1-type domain 5 protein-coding 561_WT_peak_4190 chr2 88990826 88991257 + 127 NA promoter-TSS (NM_144563) promoter-TSS (NM_144563) -135 NM_144563 22934 Hs.469264 NM_144563 HPRD:01589 RPIA RPI ribose 5-phosphate isomerase A protein-coding 561_WT_peak_859 chr10 5855547 5855956 + 127 NA promoter-TSS (NM_001494) promoter-TSS (NM_001494) -239 NM_001494 2665 Hs.299055 NM_001494 HPRD:02863 GDI2 HEL-S-46e|RABGDIB GDP dissociation inhibitor 2 protein-coding 561_WT_peak_2061 chr13 52377638 52378539 + 127 NA intron (NM_001270424, intron 1 of 9) CpG 210 NM_001031719 79758 Hs.266728 NM_024705 HPRD:07833 DHRS12 SDR40C1 dehydrogenase/reductase (SDR family) member 12 protein-coding 561_WT_peak_5051 chr3 32726596 32726947 + 127 NA non-coding (NR_046352, exon 1 of 17) non-coding (NR_046352, exon 1 of 17) 134 NM_015442 25904 Hs.444851 NM_015442 HPRD:16731 CNOT10 - CCR4-NOT transcription complex, subunit 10 protein-coding 561_WT_peak_599 chr1 163291414 163291781 + 127 NA promoter-TSS (NM_031423) promoter-TSS (NM_031423) -16 NM_001254748 8490 Hs.24950 NM_003617 HPRD:04471 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G-protein signaling 5 protein-coding 561_WT_peak_1283 chr11 48076853 48077123 + 127 NA intron (NM_002843, intron 1 of 24) intron (NM_002843, intron 1 of 24) 74878 NM_002843 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 561_WT_peak_913 chr10 22629414 22629865 + 126 NA Intergenic CpG -4735 NM_172242 9576 Hs.655170 NM_012443 HPRD:09305 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 561_WT_peak_3046 chr17 14205151 14205515 + 126 NA exon (NM_006041, exon 1 of 2) exon (NM_006041, exon 1 of 2) 827 NM_006041 9953 Hs.48384 NM_006041 HS3ST3B1 30ST3B1|3OST3B1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 protein-coding 561_WT_peak_7025 chr8 56986843 56987314 + 126 NA promoter-TSS (NM_001023) promoter-TSS (NM_001023) 62 NM_001146227 6224 Hs.8102 NM_001023 RPS20 S20 ribosomal protein S20 protein-coding 561_WT_peak_4023 chr2 36473466 36473814 + 126 NA Intergenic Intergenic 109073 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 561_WT_peak_6218 chr6 27782328 27782527 + 126 NA promoter-TSS (NM_003521) promoter-TSS (NM_003521) 91 NM_021066 8331 Hs.406691 NM_021066 HIST1H2AJ H2A/E|H2AFE|dJ160A22.4 histone cluster 1, H2aj protein-coding 561_WT_peak_1890 chr12 121567000 121567219 + 126 NA Intergenic Intergenic -3513 NR_033953 5027 Hs.729169 NM_002562 HPRD:03977 P2RX7 P2X7 purinergic receptor P2X, ligand-gated ion channel, 7 protein-coding 561_WT_peak_7093 chr8 102149377 102149843 + 126 NA Intergenic Intergenic 68350 NM_001267708 51123 Hs.374485 NM_016096 HPRD:13688 ZNF706 PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 561_WT_peak_1915 chr12 124196669 124196901 + 126 NA promoter-TSS (NM_012463) promoter-TSS (NM_012463) -80 NM_012463 23545 Hs.25786 NM_012463 HPRD:16521 ATP6V0A2 A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS ATPase, H+ transporting, lysosomal V0 subunit a2 protein-coding 561_WT_peak_644 chr1 182360474 182360905 + 126 NA promoter-TSS (NM_001033056) promoter-TSS (NM_001033056) -150 NM_001033056 2752 Hs.518525 NM_002065 HPRD:00701 GLUL GLNS|GS|PIG43|PIG59 glutamate-ammonia ligase protein-coding 561_WT_peak_1187 chr11 2421619 2422049 + 126 NA promoter-TSS (NM_001297659) promoter-TSS (NM_001297659) 116 NM_005706 10078 Hs.523424 NM_005706 HPRD:10357 TSSC4 - tumor suppressing subtransferable candidate 4 protein-coding 561_WT_peak_471 chr1 148000730 148000970 + 126 NA intron (NR_102404, intron 17 of 18).2 tRNA-Asn-AAC|tRNA|tRNA 6704 NR_104086 101954277 NR_104086 RNVU1-19 RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19 RNA, variant U1 small nuclear 19 snRNA 561_WT_peak_2669 chr16 3208874 3209123 + 126 NA Intergenic CpG 23864 NM_001134655 7760 Hs.115284 NM_004220 HPRD:12224 ZNF213 CR53|ZKSCAN21|ZSCAN53 zinc finger protein 213 protein-coding 561_WT_peak_3952 chr2 7865669 7866000 + 126 NA Intergenic Intergenic 173952 NR_110256 101929551 Hs.116006 NR_110256 LOC101929551 - uncharacterized LOC101929551 ncRNA 561_WT_peak_4613 chr20 34203648 34204168 + 126 NA promoter-TSS (NM_003116) promoter-TSS (NM_003116) 99 NM_003116 6676 Hs.123159 NM_003116 HPRD:04330 SPAG4 CT127|SUN4 sperm associated antigen 4 protein-coding 561_WT_peak_1676 chr12 48499978 48500244 + 126 NA promoter-TSS (NM_001267594) promoter-TSS (NM_001267594) -20 NM_001267594 29843 Hs.371957 NM_014554 HPRD:07153 SENP1 SuPr-2 SUMO1/sentrin specific peptidase 1 protein-coding 561_WT_peak_5666 chr5 1801486 1801722 + 126 NA exon (NM_004553, exon 1 of 4) exon (NM_004553, exon 1 of 4) 108 NM_004553 4726 Hs.408257 NM_004553 NDUFS6 CI-13kA|CI-13kD-A|CI13KDA NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) protein-coding 561_WT_peak_3580 chr19 3505736 3506109 + 126 NA promoter-TSS (NM_016263) promoter-TSS (NM_016263) -373 NM_016263 51343 Hs.413133 NM_016263 FZR1 CDC20C|CDH1|FZR|FZR2|HCDH|HCDH1 fizzy/cell division cycle 20 related 1 (Drosophila) protein-coding 561_WT_peak_5658 chr4 191043838 191044285 + 125 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat 58404 NR_121644 100419743 NR_121644 DBET DBE-T D4Z4 binding element transcript (non-protein coding) ncRNA 561_WT_peak_4473 chr2 219433347 219434001 + 125 NA promoter-TSS (NM_020935) promoter-TSS (NM_020935) 371 NM_001271634 9125 Hs.148767 NM_005444 HPRD:08828 RQCD1 CNOT9|CT129|RCD-1|RCD1 RCD1 required for cell differentiation1 homolog (S. pombe) protein-coding 561_WT_peak_4327 chr2 149925940 149926152 + 125 NA intron (NM_177964, intron 1 of 6) intron (NM_177964, intron 1 of 6) 31065 NM_177964 130576 Hs.357567 NM_177964 HPRD:14045 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 561_WT_peak_2164 chr14 32030571 32030927 + 125 NA exon (NM_025152, exon 1 of 11) exon (NM_025152, exon 1 of 11) 158 NR_120408 80224 Hs.288981 NM_025152 HPRD:16600 NUBPL C14orf127|IND1|huInd1 nucleotide binding protein-like protein-coding 561_WT_peak_845 chr10 3799913 3800314 + 125 NA Intergenic Intergenic 27360 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 561_WT_peak_4421 chr2 198299300 198300170 + 125 NA promoter-TSS (NM_012433) promoter-TSS (NM_012433) 36 NM_001005526 23451 Hs.632554 NM_012433 HPRD:09281 SF3B1 Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155 splicing factor 3b, subunit 1, 155kDa protein-coding 561_WT_peak_5715 chr5 42951159 42951529 + 125 NA Intergenic CpG 42091 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 561_WT_peak_5437 chr4 26585281 26585713 + 125 NA promoter-TSS (NM_001292054) promoter-TSS (NM_001292054) -49 NM_001292054 55296 Hs.479403 NM_018317 HPRD:07730 TBC1D19 - TBC1 domain family, member 19 protein-coding 561_WT_peak_391 chr1 114354653 114354954 + 125 NA exon (NM_018364, exon 1 of 7) exon (NM_018364, exon 1 of 7) 267 NM_018364 54665 Hs.486285 NM_018364 HPRD:08561 RSBN1 ROSBIN round spermatid basic protein 1 protein-coding 561_WT_peak_1558 chr12 4758271 4758494 + 125 NA promoter-TSS (NM_001278309) promoter-TSS (NM_001278309) 118 NM_005002 4704 Hs.75227 NM_005002 NDUFA9 CC6|CI-39k|CI39k|NDUFS2L|SDR22E1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa protein-coding 561_WT_peak_5490 chr4 56814819 56815454 + 125 NA 5' UTR (NM_025009, exon 1 of 26) 5' UTR (NM_025009, exon 1 of 26) 162 NM_025009 9662 Hs.518767 NM_014645 HPRD:09954 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135kDa protein-coding 561_WT_peak_7273 chr9 66493856 66494188 + 125 NA promoter-TSS (NR_024496) promoter-TSS (NR_024496) -247 NR_024496 442421 Hs.585349 NR_024496 PTGER4P2-CDK2AP2P2 PTGER4P2 PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene pseudo 561_WT_peak_3669 chr19 16435585 16436110 + 125 NA intron (NM_016270, intron 1 of 2) CpG 196 NM_016270 10365 Hs.744182 NM_016270 HPRD:03602 KLF2 LKLF Kruppel-like factor 2 protein-coding 561_WT_peak_2687 chr16 8891531 8891910 + 125 NA promoter-TSS (NM_000303) promoter-TSS (NM_000303) 50 NM_000303 5373 Hs.625732 NM_000303 HPRD:03472 PMM2 CDG1|CDG1a|CDGS|PMI|PMI1|PMM 2 phosphomannomutase 2 protein-coding 561_WT_peak_5025 chr3 15468854 15469046 + 125 NA promoter-TSS (NM_152396) promoter-TSS (NM_152396) 92 NM_152396 131965 Hs.149487 NM_152396 HPRD:14494 METTL6 - methyltransferase like 6 protein-coding 561_WT_peak_2765 chr16 29625136 29625368 + 125 NA promoter-TSS (NR_002593) promoter-TSS (NR_002593) -214 NR_002593 81893 Hs.677169 NM_031211 HPRD:13964 SLC7A5P1 DC49|LAT1-3TM|MLAS|hLAT1-3TM solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 pseudo 561_WT_peak_814 chr1 236260394 236260628 + 125 NA Intergenic LTR10A|LTR|ERV1 -32030 NM_002508 4811 Hs.356624 NM_002508 HPRD:00574 NID1 NID nidogen 1 protein-coding 561_WT_peak_3189 chr17 41323191 41323482 + 125 NA promoter-TSS (NR_110868) promoter-TSS (NR_110868) 349 NM_001291571 4077 Hs.277721 NM_005899 HPRD:01326 NBR1 1A1-3B|IAI3B|M17S2 neighbor of BRCA1 gene 1 protein-coding 561_WT_peak_3957 chr2 9770923 9771134 + 125 NA intron (NM_006826, intron 1 of 5) CpG-14702 156 NM_006826 10971 Hs.74405 NM_006826 HPRD:00886 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta protein-coding 561_WT_peak_1659 chr12 44200167 44200454 + 125 NA promoter-TSS (NM_001242397) promoter-TSS (NM_001242397) -132 NR_073473 5756 Hs.189075 NM_002822 HPRD:10174 TWF1 A6|PTK9 twinfilin actin-binding protein 1 protein-coding 561_WT_peak_66 chr1 12570718 12571161 + 125 NA 3' UTR (NM_018156, exon 69 of 69) 3' UTR (NM_018156, exon 69 of 69) 3639 NR_003022 677882 Hs.658450 NR_003022 SNORA59B ACA59 small nucleolar RNA, H/ACA box 59B snoRNA 561_WT_peak_587 chr1 161424255 161424615 + 125 NA Intergenic CpG -50770 NM_021642 2212 Hs.352642 NM_021642 HPRD:00906 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding 561_WT_peak_1683 chr12 49523887 49524350 + 125 NA intron (NM_006082, intron 1 of 3) CpG 1186 NM_006082 10376 Hs.524390 NM_006082 HPRD:03960 TUBA1B K-ALPHA-1 tubulin, alpha 1b protein-coding 561_WT_peak_6795 chr7 102937865 102938194 + 124 NA intron (NM_004279, intron 1 of 12) CpG 156 NM_004279 9512 Hs.184211 NM_004279 HPRD:07539 PMPCB Beta-MPP|MPP11|MPPB|MPPP52|P-52 peptidase (mitochondrial processing) beta protein-coding 561_WT_peak_4971 chr22 50624065 50624265 + 124 NA promoter-TSS (NM_025204) promoter-TSS (NM_025204) -195 NM_025204 80305 Hs.517731 NM_025204 HPRD:11450 TRABD LP6054|PP2447 TraB domain containing protein-coding 561_WT_peak_3802 chr19 45972698 45973137 + 124 NA intron (NM_006732, intron 1 of 3) intron (NM_006732, intron 1 of 3) 1664 NM_006732 2354 Hs.590958 NM_006732 HPRD:01270 FOSB AP-1|G0S3|GOS3|GOSB FBJ murine osteosarcoma viral oncogene homolog B protein-coding 561_WT_peak_7078 chr8 98788589 98788802 + 124 NA intron (NM_018407, intron 1 of 6) CpG 886 NM_018407 55353 Hs.492314 NM_018407 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 561_WT_peak_5974 chr5 143569480 143569766 + 124 NA intron (NM_020768, intron 2 of 3) intron (NM_020768, intron 2 of 3) 19186 NM_020768 57528 Hs.661870 NM_020768 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 561_WT_peak_3212 chr17 44438626 44438865 + 124 NA intron (NM_016632, intron 1 of 4).3 CpG 389 NM_001039083 100506084 Hs.559259 NM_001039083 ENSG00000228696 ARL17B ARL17|ARL17A ADP-ribosylation factor-like 17B protein-coding 561_WT_peak_7651 chrY 15815665 15816074 + 124 NA 5' UTR (NM_004202, exon 1 of 2) 5' UTR (NM_004202, exon 1 of 2) 422 NM_004202 9087 Hs.159201 NM_004202 HPRD:02458 TMSB4Y TB4Y thymosin beta 4, Y-linked protein-coding 561_WT_peak_7629 chrX 153626221 153626507 + 124 NA promoter-TSS (NM_006013) promoter-TSS (NM_006013) -207 NM_001256580 6134 Hs.534404 NM_006013 HPRD:02421 RPL10 AUTSX5|DXS648|DXS648E|L10|NOV|QM ribosomal protein L10 protein-coding 561_WT_peak_14 chr1 1342433 1342974 + 124 NA promoter-TSS (NM_017971) promoter-TSS (NM_017971) -10 NM_017971 55052 Hs.182698 NM_017971 HPRD:14746 MRPL20 L20mt|MRP-L20 mitochondrial ribosomal protein L20 protein-coding 561_WT_peak_7650 chrY 15590980 15591731 + 124 NA intron (NM_001258270, intron 1 of 27) CpG 1195 NR_047599 7404 Hs.115277 NM_007125 HPRD:02451 UTY KDM6AL|UTY1 ubiquitously transcribed tetratricopeptide repeat containing, Y-linked protein-coding 561_WT_peak_479 chr1 148760197 148760976 + 124 NA intron (NR_104217, intron 2 of 17) CpG -45429 NM_001144032 730262 NM_001144032 PPIAL4E COAS2 peptidylprolyl isomerase A (cyclophilin A)-like 4E protein-coding 561_WT_peak_6299 chr6 34203504 34204315 + 124 NA promoter-TSS (NM_002131) promoter-TSS (NM_002131) -668 NM_145903 3159 Hs.518805 NM_002131 HPRD:02829 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 561_WT_peak_184 chr1 37980182 37980662 + 124 NA promoter-TSS (NM_022756) promoter-TSS (NM_022756) -2 NM_022756 64769 Hs.17118 NM_022756 MEAF6 C1orf149|CENP-28|EAF6|NY-SAR-91 MYST/Esa1-associated factor 6 protein-coding 561_WT_peak_2615 chr15 93352503 93353054 + 124 NA Intergenic CpG 14064 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 561_WT_peak_5440 chr4 36287842 36288279 + 124 NA intron (NM_001170700, intron 1 of 8) intron (NM_001170700, intron 1 of 8) 2416 NM_001170700 401124 Hs.363407 NM_001136536 DTHD1 - death domain containing 1 protein-coding 561_WT_peak_4423 chr2 198364605 198364904 + 124 NA promoter-TSS (NM_002157) promoter-TSS (NM_002157) 33 NM_001202485 100529241 Hs.633165 NM_001202485 HSPE1-MOB4 HSPE1-PHOCN HSPE1-MOB4 readthrough protein-coding 561_WT_peak_7569 chrX 69353812 69353976 + 124 NA exon (NM_001551, exon 2 of 7) exon (NM_001551, exon 2 of 7) 576 NM_001551 3476 Hs.496267 NM_001551 HPRD:02140 IGBP1 ALPHA-4|IBP1 immunoglobulin (CD79A) binding protein 1 protein-coding 561_WT_peak_6182 chr6 26554207 26554544 + 124 NA Intergenic tRNA-Ile-ATT|tRNA|tRNA 15803 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 561_WT_peak_5648 chr4 185655288 185655508 + 124 NA promoter-TSS (NM_024629) promoter-TSS (NM_024629) -112 NM_024629 79682 Hs.575032 NM_024629 HPRD:14722 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 561_WT_peak_2243 chr14 61809232 61809598 + 124 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 21254 NM_006255 5583 Hs.333907 NM_006255 HPRD:05669 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C, eta protein-coding 561_WT_peak_7617 chrX 135055540 135055881 + 124 NA intron (NM_173470, intron 1 of 3) CpG 424 NM_173470 93380 Hs.110702 NM_173470 HPRD:06626 MMGT1 EMC5|TMEM32 membrane magnesium transporter 1 protein-coding 561_WT_peak_23 chr1 2322772 2323002 + 124 NA promoter-TSS (NM_007033) promoter-TSS (NM_007033) 303 NR_125361 79906 Hs.642701 NM_024848 HPRD:07843 MORN1 - MORN repeat containing 1 protein-coding 561_WT_peak_7410 chr9 123342118 123342822 + 124 NA promoter-TSS (NR_073556) promoter-TSS (NR_073556) -22 NR_073557 55755 Hs.269560 NM_018249 HPRD:09740 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 561_WT_peak_1401 chr11 70049123 70049628 + 124 NA 5' UTR (NM_003824, exon 1 of 2) 5' UTR (NM_003824, exon 1 of 2) 106 NM_003824 8772 Hs.86131 NM_003824 HPRD:03909 FADD MORT1 Fas (TNFRSF6)-associated via death domain protein-coding 561_WT_peak_2040 chr13 48807350 48807654 + 124 NA exon (NM_021999, exon 1 of 6) exon (NM_021999, exon 1 of 6) 228 NM_021999 9445 Hs.643683 NM_021999 HPRD:04878 ITM2B ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|imBRI2 integral membrane protein 2B protein-coding 561_WT_peak_4408 chr2 192542661 192542919 + 123 NA promoter-TSS (NM_001254736) promoter-TSS (NM_001254736) -8 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 561_WT_peak_2320 chr14 90422593 90422858 + 123 NA intron (NM_001008744, intron 1 of 15) MIR|SINE|MIR 479 NM_018319 55775 Hs.209945 NM_018319 HPRD:06226 TDP1 - tyrosyl-DNA phosphodiesterase 1 protein-coding 561_WT_peak_2286 chr14 74551696 74551944 + 123 NA promoter-TSS (NM_001278594) promoter-TSS (NM_001278594) 164 NM_001024674 91750 Hs.612866 NM_001024674 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 561_WT_peak_317 chr1 91487243 91488133 + 123 NA promoter-TSS (NM_016620) promoter-TSS (NM_016620) 124 NM_201269 84146 Hs.173001 NM_016620 HPRD:15885 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 561_WT_peak_2721 chr16 21513090 21513542 + 123 NA non-coding (NR_027155, exon 1 of 29) non-coding (NR_027155, exon 1 of 29) 286 NR_027155 100271836 Hs.552700 NR_027155 ENSG00000180747 SMG1P3 - SMG1 pseudogene 3 pseudo 561_WT_peak_7180 chr8 144631383 144631852 + 123 NA Intergenic MLT1A0|LTR|ERVL-MaLR -3940 NM_001166237 79792 Hs.118983 NM_024736 HPRD:11014 GSDMD DF5L|DFNA5L|GSDMDC1 gasdermin D protein-coding 561_WT_peak_5726 chr5 43066025 43067074 + 123 NA promoter-TSS (NR_102752) promoter-TSS (NR_102752) 524 NR_034127 100132356 Hs.726831 NM_175919 LOC100132356 - uncharacterized LOC100132356 ncRNA 561_WT_peak_993 chr10 52383865 52384198 + 123 NA promoter-TSS (NM_147156) promoter-TSS (NM_147156) -294 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 561_WT_peak_5857 chr5 96143392 96143835 + 123 NA 5' UTR (NM_016442, exon 1 of 20) 5' UTR (NM_016442, exon 1 of 20) 279 NM_001040458 51752 Hs.666524 NM_016442 HPRD:06015 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 561_WT_peak_4357 chr2 170440921 170441488 + 123 NA intron (NM_004792, intron 1 of 13) CpG 354 NM_004792 9360 Hs.470544 NM_004792 HPRD:12083 PPIG CARS-Cyp|CYP|SCAF10|SRCyp peptidylprolyl isomerase G (cyclophilin G) protein-coding 561_WT_peak_3798 chr19 45953615 45954051 + 123 NA Intergenic AluSx|SINE|Alu -17420 NM_001114171 2354 Hs.590958 NM_006732 HPRD:01270 FOSB AP-1|G0S3|GOS3|GOSB FBJ murine osteosarcoma viral oncogene homolog B protein-coding 561_WT_peak_1526 chr11 128194502 128195043 + 123 NA Intergenic Intergenic 197433 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 561_WT_peak_932 chr10 30637888 30638168 + 123 NA intron (NM_018109, intron 1 of 8) CpG 239 NM_018109 55149 Hs.173946 NM_018109 HPRD:15097 MTPAP PAPD1|SPAX4 mitochondrial poly(A) polymerase protein-coding 561_WT_peak_1104 chr10 96305390 96305731 + 123 NA promoter-TSS (NM_018063) promoter-TSS (NM_018063) 36 NM_001289068 3070 Hs.655830 NM_018063 HPRD:07232 HELLS LSH|PASG|SMARCA6 helicase, lymphoid-specific protein-coding 561_WT_peak_5805 chr5 72143850 72144401 + 123 NA intron (NM_153188, intron 1 of 24) CpG 195 NM_153188 3842 Hs.482497 NM_002270 HPRD:04210 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 561_WT_peak_2437 chr15 40986973 40987254 + 123 NA promoter-TSS (NM_001164270) promoter-TSS (NM_001164270) 190 NR_040058 100505648 Hs.586876 NR_040058 ENSG00000245849 RAD51-AS1 - RAD51 antisense RNA 1 (head to head) ncRNA 561_WT_peak_2588 chr15 85923318 85923752 + 123 NA promoter-TSS (NM_006738) promoter-TSS (NM_006738) -312 NM_007200 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 561_WT_peak_1894 chr12 121837924 121838464 + 123 NA intron (NM_001256858, intron 1 of 4) CpG 273 NM_194271 80196 Hs.292804 NM_025126 HPRD:10509 RNF34 CARP-1|CARP1|RFI|RIF|RIFF|hRFI ring finger protein 34, E3 ubiquitin protein ligase protein-coding 561_WT_peak_623 chr1 172807556 172807873 + 123 NA Intergenic Intergenic 179529 NM_000639 356 Hs.2007 NM_000639 HPRD:00610 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6 Fas ligand (TNF superfamily, member 6) protein-coding 561_WT_peak_5825 chr5 77071634 77072081 + 123 NA intron (NM_001297738, intron 1 of 2) CpG 328 NM_001297740 6902 Hs.291212 NM_004607 HPRD:18166 TBCA - tubulin folding cofactor A protein-coding 561_WT_peak_4919 chr22 39715783 39716159 + 123 NA promoter-TSS (NM_000967) promoter-TSS (NM_000967) -301 NM_000967 6122 Hs.119598 NM_000967 HPRD:16042 RPL3 ASC-1|L3|TARBP-B ribosomal protein L3 protein-coding 561_WT_peak_601 chr1 166845032 166845612 + 123 NA intron (NM_053053, intron 1 of 7) CpG 332 NM_053053 117143 Hs.435967 NM_053053 HPRD:18114 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 561_WT_peak_7612 chrX 130946936 130947350 + 123 NA intron (NR_026975, intron 2 of 12) intron (NR_026975, intron 2 of 12) 17528 NR_026975 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 561_WT_peak_7135 chr8 125273927 125274442 + 123 NA Intergenic Intergenic -14545 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 561_WT_peak_2564 chr15 78246296 78246467 + 123 NA Intergenic MER5A|DNA|hAT-Charlie -27193 NR_027024 645752 Hs.546408 NR_027024 LOC645752 - golgin A6 family, member A pseudogene pseudo 561_WT_peak_6437 chr6 111580370 111580884 + 122 NA 5' UTR (NM_153369, exon 1 of 4) 5' UTR (NM_153369, exon 1 of 4) 145 NM_153369 91749 Hs.400572 NM_153369 KIAA1919 MFSD4B|NaGLT1 KIAA1919 protein-coding 561_WT_peak_4640 chr20 42380099 42380449 + 122 NA Intergenic Intergenic -24632 NM_176791 149699 Hs.447626 NM_176791 HPRD:12778 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1-like protein-coding 561_WT_peak_4182 chr2 87303456 87303897 + 122 NA promoter-TSS (NR_026846) promoter-TSS (NR_026846) -140 NR_026846 285074 Hs.424184 NM_001012626 HPRD:17345 LOC285074 - anaphase promoting complex subunit 1 pseudogene pseudo 561_WT_peak_2316 chr14 88459102 88459929 + 122 NA promoter-TSS (NM_001201401) promoter-TSS (NM_001201401) 100 NM_001201401 2581 Hs.513439 NM_000153 HPRD:06057 GALC - galactosylceramidase protein-coding 561_WT_peak_657 chr1 185286687 185287262 + 122 NA promoter-TSS (NM_006469) promoter-TSS (NM_006469) -513 NM_006469 10625 Hs.497183 NM_006469 HPRD:10004 IVNS1ABP FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 561_WT_peak_6840 chr7 129251134 129251680 + 122 NA promoter-TSS (NM_001293163) promoter-TSS (NM_001293163) -136 NM_001293163 4899 Hs.654363 NM_005011 HPRD:02930 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 561_WT_peak_2153 chr14 24898860 24899327 + 122 NA promoter-TSS (NM_015299) promoter-TSS (NM_015299) -48 NM_015299 23351 Hs.713590 NM_015299 HPRD:11076 KHNYN KIAA0323 KH and NYN domain containing protein-coding 561_WT_peak_1694 chr12 51157472 51157800 + 122 NA promoter-TSS (NM_005171) promoter-TSS (NM_005171) -153 NM_005171 466 Hs.648565 NM_005171 HPRD:00440 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 561_WT_peak_2887 chr16 70285598 70286042 + 122 NA promoter-TSS (NM_058219) promoter-TSS (NM_058219) 13 NM_058219 118460 Hs.660633 NM_058219 HPRD:12107 EXOSC6 EAP4|MTR3|Mtr3p|hMtr3p|p11 exosome component 6 protein-coding 561_WT_peak_3590 chr19 5719830 5720131 + 122 NA promoter-TSS (NM_152784) promoter-TSS (NM_152784) 196 NR_076392 9361 Hs.350265 NM_004793 HPRD:05689 LONP1 LON|LONP|LonHS|PIM1|PRSS15|hLON lon peptidase 1, mitochondrial protein-coding 561_WT_peak_1433 chr11 82868151 82868423 + 122 NA 5' UTR (NM_015885, exon 1 of 16) 5' UTR (NM_015885, exon 1 of 16) 150 NM_015885 51585 Hs.128959 NM_015885 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 561_WT_peak_4130 chr2 70352080 70352465 + 122 NA non-coding (NR_024444, exon 1 of 2) non-coding (NR_024444, exon 1 of 2) 176 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LOC100133985 - uncharacterized LOC100133985 ncRNA 561_WT_peak_3718 chr19 33864648 33864926 + 122 NA promoter-TSS (NM_001252296) promoter-TSS (NM_001252296) 212 NM_001806 1054 Hs.429666 NM_001806 HPRD:00738 CEBPG GPE1BP|IG/EBP-1 CCAAT/enhancer binding protein (C/EBP), gamma protein-coding 561_WT_peak_4009 chr2 28615692 28615938 + 122 NA promoter-TSS (NM_005253) promoter-TSS (NM_005253) 36 NM_005253 2355 Hs.220971 NM_005253 FOSL2 FRA2 FOS-like antigen 2 protein-coding 561_WT_peak_53 chr1 10093006 10093214 + 122 NA promoter-TSS (NM_001105562) promoter-TSS (NM_001105562) 69 NM_006048 10277 Hs.593974 NM_006048 HPRD:11659 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 561_WT_peak_3057 chr17 17597559 17597900 + 122 NA intron (NM_030665, intron 1 of 5) intron (NM_030665, intron 1 of 5) 12942 NM_030665 10743 Hs.655395 NM_030665 HPRD:07406 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 561_WT_peak_2874 chr16 67880602 67880905 + 122 NA promoter-TSS (NM_005796) promoter-TSS (NM_005796) -66 NM_005796 10204 Hs.356630 NM_005796 NUTF2 NTF2|PP15 nuclear transport factor 2 protein-coding 561_WT_peak_6254 chr6 29910316 29910560 + 122 NA intron (NM_002116, intron 1 of 7) CpG 191 NM_002116 3105 Hs.181244 NM_002116 HPRD:00826 HLA-A HLAA major histocompatibility complex, class I, A protein-coding 561_WT_peak_4292 chr2 128643861 128644185 + 122 NA promoter-TSS (NM_001199140) promoter-TSS (NM_001199140) -509 NM_001199140 83607 Hs.546449 NM_031445 HPRD:14625 AMMECR1L - AMMECR1-like protein-coding 561_WT_peak_228 chr1 46806294 46806636 + 122 NA promoter-TSS (NM_001256127) promoter-TSS (NM_001256127) -385 NM_001256128 387338 Hs.163424 NM_199044 NSUN4 SHTAP NOP2/Sun domain family, member 4 protein-coding 561_WT_peak_698 chr1 205600310 205600587 + 122 NA intron (NM_021795, intron 1 of 2) intron (NM_021795, intron 1 of 2) 1552 NM_001973 2005 Hs.497520 NM_001973 HPRD:02592 ELK4 SAP1 ELK4, ETS-domain protein (SRF accessory protein 1) protein-coding 561_WT_peak_5889 chr5 122847814 122848148 + 122 NA 5' UTR (NM_001270573, exon 1 of 12) 5' UTR (NM_001270573, exon 1 of 12) 188 NM_001270573 1456 Hs.129206 NM_004384 HPRD:05034 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1, gamma 3 protein-coding 561_WT_peak_4858 chr22 24830418 24831105 + 122 NA intron (NR_103546, intron 19 of 19) MIR3|SINE|MIR 2674 NM_001278497 135 Hs.197029 NM_000675 HPRD:00043 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 561_WT_peak_3508 chr18 51884032 51884525 + 122 NA promoter-TSS (NR_110234) promoter-TSS (NR_110234) -9 NM_001288980 162681 Hs.208701 NM_173529 HPRD:11334 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 561_WT_peak_5261 chr3 132378975 132379416 + 122 NA promoter-TSS (NM_032169) promoter-TSS (NM_032169) 55 NM_024818 79876 Hs.170737 NM_024818 HPRD:15598 UBA5 THIFP1|UBE1DC1 ubiquitin-like modifier activating enzyme 5 protein-coding 561_WT_peak_2331 chr14 91694877 91695357 + 122 NA Intergenic Intergenic 15735 NM_001177676 8111 Hs.8882 NM_003485 HPRD:03241 GPR68 GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 561_WT_peak_5402 chr4 4543503 4544063 + 122 NA promoter-TSS (NM_016930) promoter-TSS (NM_016930) -8 NM_016930 53407 Hs.584913 NM_016930 HPRD:06923 STX18 Ufe1 syntaxin 18 protein-coding 561_WT_peak_2877 chr16 68344631 68345062 + 122 NA promoter-TSS (NM_032178) promoter-TSS (NM_032178) 22 NM_032178 84138 Hs.729520 NM_032178 SLC7A6OS - solute carrier family 7, member 6 opposite strand protein-coding 561_WT_peak_63 chr1 12040310 12040783 + 122 NA intron (NM_001127660, intron 1 of 17) CpG 308 NM_014874 9927 Hs.376681 NM_014874 HPRD:08495 MFN2 CMT2A|CMT2A2|CPRP1|HSG|MARF mitofusin 2 protein-coding 561_WT_peak_7504 chrX 13142103 13142288 + 122 NA Intergenic Intergenic -79278 NM_174901 171484 Hs.667546 NM_174901 HPRD:06507 FAM9C TEX39C family with sequence similarity 9, member C protein-coding 561_WT_peak_9 chr1 1167119 1167399 + 122 NA promoter-TSS (NM_080605) promoter-TSS (NM_080605) 188 NM_016547 51150 Hs.42806 NM_016176 HPRD:13113 SDF4 Cab45|SDF-4 stromal cell derived factor 4 protein-coding 561_WT_peak_1835 chr12 105065455 105065718 + 122 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 80175 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 561_WT_peak_6021 chr5 172198964 172199685 + 122 NA Intergenic CpG-21390 -1121 NM_004417 1843 Hs.171695 NM_004417 HPRD:02835 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 561_WT_peak_6086 chr6 4021673 4021999 + 122 NA intron (NM_003913, intron 1 of 14) CpG 267 NM_003913 8899 Hs.159014 NM_003913 HPRD:09087 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 561_WT_peak_6108 chr6 14452994 14453265 + 122 NA Intergenic Intergenic -167444 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 561_WT_peak_830 chr1 245027539 245027807 + 122 NA 5' UTR (NM_004501, exon 1 of 14) 5' UTR (NM_004501, exon 1 of 14) 154 NM_004501 3192 Hs.106212 NM_004501 HPRD:04185 HNRNPU HNRPU|SAF-A|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) protein-coding 561_WT_peak_7000 chr8 42248947 42249315 + 122 NA promoter-TSS (NM_001135694) promoter-TSS (NM_001135694) -148 NM_005662 7419 Hs.699301 NM_005662 HPRD:06750 VDAC3 HD-VDAC3|VDAC-3 voltage-dependent anion channel 3 protein-coding 561_WT_peak_2805 chr16 33963244 33963523 + 122 NA promoter-TSS (NR_038368) promoter-TSS (NR_038368) -880 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 561_WT_peak_2337 chr14 92339794 92340046 + 122 NA intron (NM_006329, intron 10 of 10) L2b|LINE|L2 -6040 NM_001128596 123036 Hs.510262 NM_152332 HPRD:11375 TC2N C14orf47|C2CD1|MTAC2D1|Tac2-N tandem C2 domains, nuclear protein-coding 561_WT_peak_2198 chr14 50335098 50335345 + 122 NA Intergenic Intergenic -15682 NM_004713 9147 Hs.655964 NM_004713 HPRD:08494 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 561_WT_peak_1974 chr13 30169004 30169510 + 122 NA intron (NM_003045, intron 1 of 12) CpG 568 NM_003045 6541 Hs.14846 NM_003045 HPRD:00091 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 protein-coding 561_WT_peak_2279 chr14 73493932 73494123 + 122 NA promoter-TSS (NM_021260) promoter-TSS (NM_021260) -107 NM_001281734 53349 Hs.335106 NM_021260 HPRD:12017 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger, FYVE domain containing 1 protein-coding 561_WT_peak_3376 chr17 78518546 78518866 + 121 NA promoter-TSS (NM_001163034) promoter-TSS (NM_001163034) 81 NM_001163034 57521 Hs.133044 NM_020761 HPRD:06184 RPTOR KOG1|Mip1 regulatory associated protein of MTOR, complex 1 protein-coding 561_WT_peak_691 chr1 204482061 204482455 + 121 NA Intergenic MIR3|SINE|MIR -3249 NM_001278518 4194 Hs.497492 NM_002393 HPRD:04082 MDM4 HDMX|MDMX|MRP1 MDM4, p53 regulator protein-coding 561_WT_peak_2065 chr13 53226184 53226978 + 121 NA promoter-TSS (NM_006704) promoter-TSS (NM_006704) -250 NM_001130912 10910 Hs.281902 NM_006704 SUGT1 SGT1 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) protein-coding 561_WT_peak_4446 chr2 204103511 204103926 + 121 NA 5' UTR (NM_177538, exon 1 of 13) 5' UTR (NM_177538, exon 1 of 13) 554 NM_177538 57404 Hs.446065 NM_020674 HPRD:07100 CYP20A1 CYP-M cytochrome P450, family 20, subfamily A, polypeptide 1 protein-coding 561_WT_peak_3781 chr19 42748832 42749200 + 121 NA Intergenic CpG -2280 NM_019884 2931 Hs.466828 NM_019884 HPRD:06002 GSK3A - glycogen synthase kinase 3 alpha protein-coding 561_WT_peak_7053 chr8 73921144 73921460 + 121 NA exon (NM_017489, exon 1 of 10) exon (NM_017489, exon 1 of 10) 205 NM_003218 7013 Hs.442707 NM_003218 HPRD:02975 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor (NIMA-interacting) 1 protein-coding 561_WT_peak_3700 chr19 21203518 21203803 + 121 NA intron (NM_001172671, intron 1 of 4) intron (NM_001172671, intron 1 of 4) 234 NM_001172671 80264 Hs.729202 NM_025189 HPRD:15788 ZNF430 - zinc finger protein 430 protein-coding 561_WT_peak_5378 chr3 197677010 197677272 + 121 NA promoter-TSS (NM_001134435) promoter-TSS (NM_001134435) 89 NM_000996 6165 Hs.529631 NM_000996 HPRD:01596 RPL35A DBA5|L35A ribosomal protein L35a protein-coding 561_WT_peak_4916 chr22 39101965 39102206 + 121 NA exon (NM_004286, exon 1 of 12) exon (NM_004286, exon 1 of 12) 278 NM_004286 9567 Hs.276925 NM_004286 HPRD:03765 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 561_WT_peak_4512 chr2 236179688 236179899 + 121 NA Intergenic Intergenic -222940 NM_001037131 116987 Hs.435039 NM_014914 HPRD:16359 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 561_WT_peak_5660 chr5 217868 218206 + 121 NA promoter-TSS (NM_001294332) promoter-TSS (NM_001294332) 260 NM_145265 133957 Hs.294145 NM_145265 CCDC127 - coiled-coil domain containing 127 protein-coding 561_WT_peak_5687 chr5 35617610 35617975 + 121 NA promoter-TSS (NM_144722) promoter-TSS (NM_144722) -197 NM_144722 79925 Hs.298863 NM_024867 HPRD:11181 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 561_WT_peak_5582 chr4 114683000 114684185 + 121 NA promoter-TSS (NM_172128) promoter-TSS (NM_172128) -509 NM_001221 817 Hs.144114 NM_001221 HPRD:09653 CAMK2D CAMKD calcium/calmodulin-dependent protein kinase II delta protein-coding 561_WT_peak_782 chr1 228772771 228772996 + 121 NA Intergenic CpG -7511 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_798 chr1 234614664 234614902 + 121 NA promoter-TSS (NM_005646) promoter-TSS (NM_005646) 66 NM_005646 6894 Hs.498115 NM_005646 HPRD:05445 TARBP1 TRM3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 561_WT_peak_2388 chr14 105282319 105282768 + 121 NA Intergenic CpG -4995 NR_024396 196872 Hs.352220 NR_024396 ENSG00000258701 LINC00638 - long intergenic non-protein coding RNA 638 ncRNA 561_WT_peak_2497 chr15 57210403 57210817 + 121 NA promoter-TSS (NM_207038) promoter-TSS (NM_207038) 87 NR_015419 145783 Hs.620525 NR_015419 ENSG00000137871 LOC145783 - uncharacterized LOC145783 ncRNA 561_WT_peak_3537 chr18 77438928 77439484 + 121 NA promoter-TSS (NM_004715) promoter-TSS (NM_004715) -595 NM_004715 9150 Hs.465490 NM_004715 HPRD:05377 CTDP1 CCFDN|FCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein-coding 561_WT_peak_1529 chr11 129872937 129873515 + 121 NA promoter-TSS (NM_020228) promoter-TSS (NM_020228) -496 NM_020228 56980 Hs.275086 NM_020228 HPRD:11455 PRDM10 PFM7 PR domain containing 10 protein-coding 561_WT_peak_2173 chr14 35761507 35761874 + 121 NA exon (NM_002791, exon 1 of 7) exon (NM_002791, exon 1 of 7) 167 NM_002791 5687 Hs.446260 NM_002791 HPRD:04171 PSMA6 IOTA|PROS27|p27K proteasome (prosome, macropain) subunit, alpha type, 6 protein-coding 561_WT_peak_6656 chr7 44121655 44122178 + 121 NA exon (NM_013284, exon 1 of 11) exon (NM_013284, exon 1 of 11) 223 NR_104299 27434 Hs.596982 NM_013284 HPRD:16208 POLM Pol Mu|Tdt-N polymerase (DNA directed), mu protein-coding 561_WT_peak_7041 chr8 67026392 67026625 + 121 NA Intergenic Intergenic -12770 NM_184087 84675 Hs.85524 NM_033058 HPRD:05927 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 561_WT_peak_428 chr1 144339906 144340114 + 121 NA intron (NR_111953, intron 2 of 3) CpG 749 NR_109754 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 561_WT_peak_5525 chr4 83956370 83956618 + 121 NA intron (NM_016129, intron 1 of 9) intron (NM_016129, intron 1 of 9) 255 NM_001258006 51138 Hs.190384 NM_016129 HPRD:09888 COPS4 CSN4 COP9 signalosome subunit 4 protein-coding 561_WT_peak_1182 chr11 809254 810093 + 120 NA promoter-TSS (NM_001004) promoter-TSS (NM_001004) -263 NM_001004 6181 Hs.437594 NM_001004 RPLP2 D11S2243E|LP2|P2|RPP2 ribosomal protein, large, P2 protein-coding 561_WT_peak_5119 chr3 52029705 52030049 + 120 NA promoter-TSS (NM_000992) promoter-TSS (NM_000992) 81 NM_000992 6159 Hs.425125 NM_000992 HPRD:03495 RPL29 HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370 ribosomal protein L29 protein-coding 561_WT_peak_6573 chr7 2393514 2393758 + 120 NA promoter-TSS (NM_003751) promoter-TSS (NM_003751) -838 NM_001037283 8662 Hs.371001 NM_003751 HPRD:06795 EIF3B EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1 eukaryotic translation initiation factor 3, subunit B protein-coding 561_WT_peak_585 chr1 161284103 161284582 + 120 NA intron (NM_001035513, intron 1 of 3) CpG 176 NR_103459 6391 Hs.444472 NM_003001 SDHC CYB560|CYBL|PGL3|QPS1|SDH3 succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa protein-coding 561_WT_peak_6788 chr7 102234063 102234589 + 120 NA intron (NM_001079877, intron 13 of 19) CpG-24757 -21258 NM_001097615 548644 Hs.610255 NM_001015884 HPRD:18684 POLR2J3 POLR2J2|RPB11b1|RPB11b2 polymerase (RNA) II (DNA directed) polypeptide J3 protein-coding 561_WT_peak_6416 chr6 106545684 106545888 + 120 NA promoter-TSS (NM_182907) promoter-TSS (NM_182907) -951 NM_182907 639 Hs.436023 NM_001198 HPRD:04572 PRDM1 BLIMP1|PRDI-BF1 PR domain containing 1, with ZNF domain protein-coding 561_WT_peak_6313 chr6 37786556 37786795 + 120 NA promoter-TSS (NM_021943) promoter-TSS (NM_021943) -632 NM_021943 60685 Hs.36959 NM_021943 HPRD:12121 ZFAND3 TEX27 zinc finger, AN1-type domain 3 protein-coding 561_WT_peak_1709 chr12 53764904 53765074 + 120 NA Intergenic Intergenic -8990 NM_138473 6667 Hs.620754 NM_003109 HPRD:01796 SP1 - Sp1 transcription factor protein-coding 561_WT_peak_5110 chr3 50275220 50275452 + 120 NA intron (NM_001282618, intron 1 of 7) intron (NM_001282618, intron 1 of 7) 1747 NM_001282618 2771 Hs.77269 NM_002070 HPRD:00764 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 protein-coding 561_WT_peak_154 chr1 32573651 32573888 + 120 NA intron (NM_012316, intron 1 of 13) intron (NM_012316, intron 1 of 13) 125 NM_012316 23633 Hs.470588 NM_012316 HPRD:09465 KPNA6 IPOA7|KPNA7 karyopherin alpha 6 (importin alpha 7) protein-coding 561_WT_peak_602 chr1 167189398 167189713 + 120 NA promoter-TSS (NM_002697) promoter-TSS (NM_002697) -511 NM_001198786 5451 Hs.283402 NM_002697 HPRD:01250 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 561_WT_peak_1636 chr12 27975102 27975403 + 120 NA Intergenic Intergenic 42065 NM_020782 57542 Hs.505104 NM_020782 HPRD:17237 KLHL42 Ctb9|KLHDC5 kelch-like family member 42 protein-coding 561_WT_peak_695 chr1 205180456 205180933 + 120 NA promoter-TSS (NM_015375) promoter-TSS (NM_015375) 33 NM_015375 25778 Hs.6874 NM_015375 HPRD:11495 DSTYK CAKUT1|DustyPK|RIP5|RIPK5 dual serine/threonine and tyrosine protein kinase protein-coding 561_WT_peak_754 chr1 226249475 226249861 + 120 NA promoter-TSS (NR_002315) promoter-TSS (NR_002315) -740 NM_002107 3020 Hs.533624 NM_002107 HPRD:03082 H3F3A H3.3A|H3F3 H3 histone, family 3A protein-coding 561_WT_peak_7087 chr8 101734043 101734328 + 120 NA 5' UTR (NM_002568, exon 1 of 15) 5' UTR (NM_002568, exon 1 of 15) 130 NM_002568 26986 Hs.387804 NM_002568 HPRD:05247 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein, cytoplasmic 1 protein-coding 561_WT_peak_7201 chr9 3528493 3528848 + 120 NA Intergenic MSTA|LTR|ERVL-MaLR -2669 NM_134428 5991 Hs.136829 NM_002919 HPRD:03215 RFX3 - regulatory factor X, 3 (influences HLA class II expression) protein-coding 561_WT_peak_1532 chr11 133815001 133815312 + 120 NA intron (NM_001277285, intron 2 of 19) intron (NM_001277285, intron 2 of 19) 11493 NM_001277285 22997 Hs.204121 NM_014987 ENSG00000080854 IGSF9B - immunoglobulin superfamily, member 9B protein-coding 561_WT_peak_4066 chr2 54013839 54014130 + 120 NA promoter-TSS (NM_001127397) promoter-TSS (NM_001127397) 1 NM_001201965 51130 Hs.40763 NM_016115 HPRD:05769 ASB3 ASB-3 ankyrin repeat and SOCS box containing 3 protein-coding 561_WT_peak_4183 chr2 87304194 87304568 + 119 NA promoter-TSS (NR_026846) promoter-TSS (NR_026846) -845 NR_026846 285074 Hs.424184 NM_001012626 HPRD:17345 LOC285074 - anaphase promoting complex subunit 1 pseudogene pseudo 561_WT_peak_2371 chr14 102289881 102290348 + 119 NA intron (NM_001161725, intron 3 of 15) intron (NM_001161725, intron 3 of 15) 13974 NM_178587 5527 Hs.368264 NM_002719 HPRD:03385 PPP2R5C B56G|PR61G protein phosphatase 2, regulatory subunit B', gamma protein-coding 561_WT_peak_2512 chr15 64679682 64680254 + 119 NA promoter-TSS (NR_109934) promoter-TSS (NR_109934) -35 NM_016213 9325 Hs.500340 NM_016213 HPRD:05140 TRIP4 ASC-1|ASC1|HsT17391|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 561_WT_peak_4476 chr2 220024989 220025259 + 119 NA intron (NM_024782, intron 1 of 7) CpG 463 NM_024782 79840 Hs.225988 NM_024782 HPRD:07784 NHEJ1 XLF nonhomologous end-joining factor 1 protein-coding 561_WT_peak_393 chr1 114414295 114414684 + 119 NA promoter-TSS (NM_001193431) promoter-TSS (NM_001193431) -114 NM_001193431 26191 Hs.535276 NM_012411 HPRD:06100 PTPN22 LYP|LYP1|LYP2|PEP|PTPN8 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) protein-coding 561_WT_peak_2636 chr15 102264228 102264632 + 119 NA exon (NM_152334, exon 1 of 19) exon (NM_152334, exon 1 of 19) 215 NM_152334 123283 Hs.657163 NM_152334 HPRD:15469 TARSL2 - threonyl-tRNA synthetase-like 2 protein-coding 561_WT_peak_1538 chr12 94184 94445 + 119 NA Intergenic TAR1|Satellite|telo 6330 NR_028269 100288778 Hs.585931 NR_028269 LOC100288778 - WAS protein family homolog 1 pseudogene pseudo 561_WT_peak_4316 chr2 136765801 136766124 + 119 NA TTS (NR_110199) TTS (NR_110199) -22708 NM_001293312 1615 Hs.503787 NM_001349 HPRD:04361 DARS HBSL|aspRS aspartyl-tRNA synthetase protein-coding 561_WT_peak_4344 chr2 160372812 160373079 + 119 NA intron (NM_001289975, intron 2 of 35) intron (NM_001289975, intron 2 of 35) -98860 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 561_WT_peak_1496 chr11 117873688 117874247 + 119 NA Intergenic Intergenic 16861 NM_001558 3587 Hs.504035 NM_001558 HPRD:00911 IL10RA CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R interleukin 10 receptor, alpha protein-coding 561_WT_peak_5022 chr3 15333488 15334021 + 119 NA intron (NM_001018009, intron 3 of 8) intron (NM_001018009, intron 3 of 8) 38063 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 561_WT_peak_3475 chr18 29598519 29598862 + 119 NA 5' UTR (NM_017831, exon 1 of 6) 5' UTR (NM_017831, exon 1 of 6) 245 NM_017831 54941 Hs.633703 NM_017831 HPRD:11500 RNF125 TRAC-1|TRAC1 ring finger protein 125, E3 ubiquitin protein ligase protein-coding 561_WT_peak_3649 chr19 14116802 14117036 + 119 NA 5' UTR (NM_002918, exon 1 of 21) 5' UTR (NM_002918, exon 1 of 21) 215 NM_002918 5989 Hs.655215 NM_002918 HPRD:02476 RFX1 EFC|RFX regulatory factor X, 1 (influences HLA class II expression) protein-coding 561_WT_peak_760 chr1 227127044 227127586 + 119 NA promoter-TSS (NM_020247) promoter-TSS (NM_020247) -623 NM_020247 56997 Hs.118241 NM_020247 HPRD:07375 ADCK3 ARCA2|CABC1|COQ10D4|COQ8|SCAR9 aarF domain containing kinase 3 protein-coding 561_WT_peak_2041 chr13 49071094 49071322 + 119 NA intron (NM_001286831, intron 10 of 11) L2b|LINE|L2 36184 NM_001268 1102 Hs.652712 NM_001268 HPRD:04631 RCBTB2 CHC1L|RLG regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 protein-coding 561_WT_peak_3903 chr19 56166398 56166867 + 119 NA intron (NM_001012478, intron 1 of 11) CpG-14459 1216 NM_001012478 11338 Hs.528007 NM_007279 HPRD:01872 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 561_WT_peak_3648 chr19 14063322 14063497 + 119 NA promoter-TSS (NM_138353) promoter-TSS (NM_138353) 90 NM_138353 90379 Hs.443636 NM_138353 ENSG00000132017 DCAF15 C19orf72 DDB1 and CUL4 associated factor 15 protein-coding 561_WT_peak_15 chr1 1509670 1510041 + 119 NA intron (NM_014188, intron 1 of 4) CpG 407 NM_014188 29101 Hs.30026 NM_014188 HPRD:13712 SSU72 HSPC182|PNAS-120 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) protein-coding 561_WT_peak_6288 chr6 32821598 32822226 + 119 NA promoter-TSS (NM_002800).3 promoter-TSS (NM_002800).3 -26 NM_002800 5698 Hs.654585 NM_002800 HPRD:01514 PSMB9 LMP2|PSMB6i|RING12|beta1i proteasome (prosome, macropain) subunit, beta type, 9 protein-coding 561_WT_peak_6530 chr6 157744334 157744791 + 119 NA 5' UTR (NM_018452, exon 1 of 4) 5' UTR (NM_018452, exon 1 of 4) 729 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 561_WT_peak_7294 chr9 73028517 73029288 + 118 NA 5' UTR (NM_001206, exon 1 of 2) 5' UTR (NM_001206, exon 1 of 2) 671 NM_001206 687 Hs.150557 NM_001206 HPRD:04211 KLF9 BTEB|BTEB1 Kruppel-like factor 9 protein-coding 561_WT_peak_4167 chr2 85555085 85555415 + 118 NA 5' UTR (NM_001206841, exon 1 of 4) 5' UTR (NM_001206841, exon 1 of 4) 169 NM_001206840 10618 Hs.593382 NM_006464 HPRD:04343 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 561_WT_peak_3272 chr17 57287235 57287548 + 118 NA promoter-TSS (NM_018149) promoter-TSS (NM_018149) 20 NM_018149 55181 Hs.7296 NM_018149 HPRD:08551 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_3005 chr17 6554517 6554966 + 118 NA promoter-TSS (NM_001105520) promoter-TSS (NM_001105520) 213 NM_016060 51003 Hs.567493 NM_016060 HPRD:14382 MED31 3110004H13Rik|Soh1 mediator complex subunit 31 protein-coding 561_WT_peak_5411 chr4 7865681 7865877 + 118 NA intron (NM_198595, intron 3 of 16) (CATCC)n|Simple_repeat|Simple_repeat 75874 NM_198595 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 561_WT_peak_5752 chr5 54429960 54430225 + 118 NA intron (NM_152623, intron 5 of 11) intron (NM_152623, intron 5 of 11) -25892 NM_001008397 493869 Hs.289044 NM_001008397 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 561_WT_peak_4303-2 chr2 133012955 133013322 + 118 NA intron (NR_027020, intron 1 of 4) SSU-rRNA_Hsa|rRNA|rRNA 1515 NR_031608 100313824 NR_031608 miRBase:MI0006336 MIR663B MIRN663B microRNA 663b ncRNA 561_WT_peak_5590 chr4 128801740 128802500 + 118 NA promoter-TSS (NM_001190801) promoter-TSS (NM_001190801) 104 NM_014264 10733 Hs.172052 NM_014264 HPRD:10387 PLK4 SAK|STK18 polo-like kinase 4 protein-coding 561_WT_peak_2093 chr13 107220000 107220463 + 118 NA exon (NM_018011, exon 1 of 4) exon (NM_018011, exon 1 of 4) 283 NM_018011 55082 Hs.508644 NM_018011 ARGLU1 - arginine and glutamate rich 1 protein-coding 561_WT_peak_1162 chr10 124768035 124768280 + 118 NA promoter-TSS (NM_001271840) promoter-TSS (NM_001271840) 46 NM_001271840 64376 Hs.501289 NM_001271840 HPRD:05873 IKZF5 PEGASUS|ZNFN1A5 IKAROS family zinc finger 5 (Pegasus) protein-coding 561_WT_peak_3266 chr17 56415243 56415494 + 118 NA intron (NR_038416, intron 1 of 2) intron (NR_038416, intron 1 of 2) 805 NR_038417 100506779 Hs.718477 NR_038410 ENSG00000265148 BZRAP1-AS1 - BZRAP1 antisense RNA 1 ncRNA 561_WT_peak_5720 chr5 43017938 43018465 + 118 NA non-coding (NR_034086, exon 1 of 2) non-coding (NR_034086, exon 1 of 2) 712 NR_034086 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 561_WT_peak_3030 chr17 8023511 8023801 + 118 NA TTS (NM_032580) TTS (NM_032580) -1422 NM_001165960 59344 Hs.232770 NM_021628 HPRD:06231 ALOXE3 ARCI3|E-LOX|eLOX-3|eLOX3 arachidonate lipoxygenase 3 protein-coding 561_WT_peak_2645 chr16 745459 745709 + 118 NA exon (NM_153350, exon 3 of 6) exon (NM_153350, exon 3 of 6) -5184 NM_032259 84219 Hs.459632 NM_032259 HPRD:15665 WDR24 C16orf21|JFP7 WD repeat domain 24 protein-coding 561_WT_peak_4036 chr2 40006170 40006372 + 118 NA exon (NM_025264, exon 1 of 10) exon (NM_025264, exon 1 of 10) 145 NM_025264 80745 Hs.468254 NM_025264 HPRD:15506 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 561_WT_peak_3976 chr2 18741576 18741977 + 118 NA exon (NM_020905, exon 1 of 2) exon (NM_020905, exon 1 of 2) 183 NM_020905 57665 Hs.120319 NM_020905 HPRD:10190 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding 561_WT_peak_421 chr1 143687377 143687725 + 118 NA intron (NR_111930, intron 1 of 8).2 intron (NR_111930, intron 1 of 8).2 424 NR_111930 100132057 Hs.585189 NR_033189 LOC100132057 - phosphodiesterase 4D interacting protein pseudogene pseudo 561_WT_peak_1943 chr13 21050048 21050256 + 118 NA intron (NM_015974, intron 3 of 7) intron (NM_015974, intron 3 of 7) -42167 NR_039721 100616304 NR_039721 MIR4499 - microRNA 4499 ncRNA 561_WT_peak_4303 chr2 133012555 133012765 + 118 NA intron (NR_027020, intron 1 of 4) SSU-rRNA_Hsa|rRNA|rRNA 1993 NR_031608 100313824 NR_031608 miRBase:MI0006336 MIR663B MIRN663B microRNA 663b ncRNA 561_WT_peak_1773 chr12 76328269 76328624 + 118 NA Intergenic Intergenic 97110 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 561_WT_peak_1793 chr12 92539100 92539653 + 118 NA 5' UTR (NM_001731, exon 1 of 2) 5' UTR (NM_001731, exon 1 of 2) 297 NM_001731 694 Hs.255935 NM_001731 BTG1 - B-cell translocation gene 1, anti-proliferative protein-coding 561_WT_peak_5667 chr5 5422290 5422518 + 118 NA promoter-TSS (NM_015325) promoter-TSS (NM_015325) -382 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongator complex ELL subunit 1 protein-coding 561_WT_peak_6713 chr7 73668828 73669216 + 118 NA promoter-TSS (NM_002914) promoter-TSS (NM_002914) -234 NM_181471 5982 Hs.647062 NM_002914 HPRD:02675 RFC2 RFC40 replication factor C (activator 1) 2, 40kDa protein-coding 561_WT_peak_2715 chr16 19079249 19079564 + 118 NA promoter-TSS (NR_119379) promoter-TSS (NR_119379) 167 NM_001190983 10229 Hs.157113 NM_016138 HPRD:03401 COQ7 CAT5|CLK-1|CLK1 coenzyme Q7 homolog, ubiquinone (yeast) protein-coding 561_WT_peak_4393 chr2 190627545 190628041 + 118 NA 5' UTR (NM_022353, exon 1 of 9) 5' UTR (NM_022353, exon 1 of 9) 131 NM_022353 64172 Hs.60772 NM_022353 HPRD:07026 OSGEPL1 Qri7 O-sialoglycoprotein endopeptidase-like 1 protein-coding 561_WT_peak_3111 chr17 29877011 29877248 + 118 NA Intergenic tRNA-Thr-ACG|tRNA|tRNA -9886 NR_029710 406968 NR_029710 miRBase:MI0000487 MIR193A MIRN193|MIRN193A microRNA 193a ncRNA 561_WT_peak_4542 chr20 2451017 2451433 + 118 NA intron (NM_003091, intron 1 of 6) CpG 274 NM_003091 6628 Hs.83753 NM_003091 HPRD:01655 SNRPB COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B small nuclear ribonucleoprotein polypeptides B and B1 protein-coding 561_WT_peak_2690 chr16 9185424 9186135 + 118 NA 5' UTR (NM_014117, exon 1 of 4) 5' UTR (NM_014117, exon 1 of 4) 242 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 561_WT_peak_1587 chr12 9911383 9911569 + 118 NA intron (NM_001781, intron 1 of 4) intron (NM_001781, intron 1 of 4) 2021 NM_001781 969 Hs.208854 NM_001781 HPRD:00119 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 561_WT_peak_4388 chr2 187350489 187351240 + 118 NA promoter-TSS (NM_018471) promoter-TSS (NM_018471) -21 NM_018471 55854 Hs.741180 NM_018471 HPRD:13988 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 561_WT_peak_523 chr1 151371737 151372197 + 118 NA promoter-TSS (NM_002796) promoter-TSS (NM_002796) -74 NM_002796 5692 Hs.89545 NM_002796 HPRD:03710 PSMB4 HN3|HsN3|PROS-26|PROS26 proteasome (prosome, macropain) subunit, beta type, 4 protein-coding 561_WT_peak_2797 chr16 31519676 31520039 + 117 NA promoter-TSS (NM_022744) promoter-TSS (NM_022744) -117 NM_022744 64755 Hs.9003 NM_022744 HPRD:07839 C16orf58 RUS chromosome 16 open reading frame 58 protein-coding 561_WT_peak_7046 chr8 67837232 67837792 + 117 NA intron (NR_002599, intron 1 of 3) CpG 265 NR_002599 641638 Hs.372680 NR_002599 ENSG00000245910 SNHG6 HBII-276HG|NCRNA00058|U87HG small nucleolar RNA host gene 6 (non-protein coding) ncRNA 561_WT_peak_4407 chr2 192542364 192542565 + 117 NA promoter-TSS (NM_001254736) promoter-TSS (NM_001254736) -334 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 561_WT_peak_1919 chr12 125411800 125412099 + 117 NA Intergenic tRNA-Asp-GAY|tRNA|tRNA 11856 NR_049820 100847004 NR_049820 miRBase:MI0018167 MIR5188 - microRNA 5188 ncRNA 561_WT_peak_176 chr1 36107118 36107425 + 117 NA promoter-TSS (NM_001199779) promoter-TSS (NM_001199779) -119 NM_001199779 5690 Hs.471441 NM_002794 PSMB2 HC7-I proteasome (prosome, macropain) subunit, beta type, 2 protein-coding 561_WT_peak_7357 chr9 98079747 98079963 + 117 NA promoter-TSS (NM_001243743) promoter-TSS (NM_001243743) 136 NM_000136 2176 Hs.494529 NM_000136 HPRD:01967 FANCC FA3|FAC|FACC Fanconi anemia, complementation group C protein-coding 561_WT_peak_778 chr1 228766096 228766278 + 117 NA Intergenic CpG -14207 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_5080 chr3 44666526 44666737 + 117 NA promoter-TSS (NR_046658) promoter-TSS (NR_046658) 120 NM_001024855 10168 Hs.157035 NM_006991 HPRD:10322 ZNF197 D3S1363E|P18|VHLaK|ZKSCAN9|ZNF166|ZNF20|ZSCAN41 zinc finger protein 197 protein-coding 561_WT_peak_5760 chr5 55623706 55624043 + 117 NA Intergenic L2c|LINE|L2 -94688 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 561_WT_peak_1816 chr12 96839635 96839827 + 117 NA Intergenic Intergenic -45365 NM_001170464 5128 Hs.506415 NM_002595 HPRD:09141 CDK17 PCTAIRE2|PCTK2 cyclin-dependent kinase 17 protein-coding 561_WT_peak_6893 chr7 149157632 149157814 + 117 NA intron (NM_015694, intron 1 of 5) CpG 330 NM_015694 27153 Hs.38512 NM_015694 HPRD:13849 ZNF777 - zinc finger protein 777 protein-coding 561_WT_peak_4419 chr2 197664112 197664606 + 117 NA 5' UTR (NM_001206774, exon 1 of 9) 5' UTR (NM_001206774, exon 1 of 9) 133 NM_001206774 9330 Hs.470996 NM_012086 HPRD:11997 GTF3C3 TFIIIC102|TFIIICgamma|TFiiiC2-102 general transcription factor IIIC, polypeptide 3, 102kDa protein-coding 561_WT_peak_4519 chr2 240323095 240323379 + 117 NA promoter-TSS (NM_006037) promoter-TSS (NM_006037) -594 NM_006037 9759 Hs.20516 NM_006037 HPRD:05610 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 561_WT_peak_5115 chr3 50638657 50639132 + 117 NA Intergenic Intergenic 10368 NM_013324 1154 Hs.655334 NM_013324 HPRD:03897 CISH BACTS2|CIS|CIS-1|G18|SOCS cytokine inducible SH2-containing protein protein-coding 561_WT_peak_4557 chr20 5100127 5100614 + 117 NA exon (NM_002592, exon 2 of 7) exon (NM_002592, exon 2 of 7) 138 NR_028370 100302739 Hs.744934 NR_028370 PCNA-AS1 PCNA-AS|PCNAAS PCNA antisense RNA 1 ncRNA 561_WT_peak_7286 chr9 70856800 70857064 + 117 NA promoter-TSS (NM_201453) promoter-TSS (NM_201453) 71 NM_001291821 445571 Hs.645337 NM_201453 CBWD3 bA561O23.1 COBW domain containing 3 protein-coding 561_WT_peak_7337 chr9 93809940 93810261 + 117 NA Intergenic Intergenic 27314 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 561_WT_peak_4108 chr2 65357112 65357485 + 117 NA 5' UTR (NM_015543, exon 1 of 4) 5' UTR (NM_015543, exon 1 of 4) 137 NM_004161 5861 Hs.310645 NM_004161 HPRD:01538 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 561_WT_peak_459 chr1 147090221 147090415 + 116 NA intron (NM_004326, intron 7 of 9) intron (NM_004326, intron 7 of 9) 52316 NM_016361 51205 Hs.562154 NM_016361 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 561_WT_peak_7346 chr9 94474474 94474729 + 116 NA Intergenic Intergenic -75974 NR_037489 100500902 NR_037489 MIR3910-2 - microRNA 3910-2 ncRNA 561_WT_peak_6054 chr5 180287792 180288031 + 116 NA intron (NM_152283, intron 1 of 2) CpG 375 NM_001172638 643836 Hs.509227 NM_152283 ENSG00000196670 ZFP62 ZET|ZNF755 ZFP62 zinc finger protein protein-coding 561_WT_peak_1093 chr10 93557889 93558269 + 116 NA promoter-TSS (NM_025235) promoter-TSS (NM_025235) -31 NR_108071 100507633 Hs.291528 NR_108070 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 561_WT_peak_4049 chr2 43653611 43654035 + 116 NA intron (NM_022065, intron 28 of 37) intron (NM_022065, intron 28 of 37) 169290 NM_001083953 63892 Hs.369592 NM_022065 HPRD:18177 THADA GITA thyroid adenoma associated protein-coding 561_WT_peak_2432 chr15 39719437 39719691 + 116 NA Intergenic Intergenic -153716 NM_003246 7057 Hs.164226 NM_003246 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 561_WT_peak_1463 chr11 101981086 101981263 + 116 NA promoter-TSS (NM_006106) promoter-TSS (NM_006106) -18 NM_001282098 10413 Hs.503692 NM_006106 HPRD:09424 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes-associated protein 1 protein-coding 561_WT_peak_2483 chr15 52274313 52274656 + 116 NA Intergenic Intergenic -10486 NM_138792 123169 Hs.567662 NM_138792 HPRD:11231 LEO1 RDL Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) protein-coding 561_WT_peak_7210 chr9 6757465 6757830 + 116 NA promoter-TSS (NM_001146694) promoter-TSS (NM_001146694) 6 NM_015061 23081 Hs.709425 NM_015061 HPRD:12016 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1 lysine (K)-specific demethylase 4C protein-coding 561_WT_peak_2927 chr16 82688951 82689356 + 116 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 28754 NM_001220488 1012 Hs.654386 NM_001257 HPRD:03219 CDH13 CDHH|P105 cadherin 13 protein-coding 561_WT_peak_4591 chr20 26189314 26189498 + 116 NA promoter-TSS (NR_030386) promoter-TSS (NR_030386) 463 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene (non-protein coding) ncRNA 561_WT_peak_2552 chr15 75182259 75182521 + 116 NA promoter-TSS (NM_001289156) promoter-TSS (NM_001289156) 38 NM_001289157 4351 Hs.75694 NM_002435 HPRD:01108 MPI CDG1B|PMI|PMI1 mannose phosphate isomerase protein-coding 561_WT_peak_4157 chr2 75185771 75186055 + 116 NA exon (NM_019896, exon 1 of 4) exon (NM_019896, exon 1 of 4) 138 NM_019896 56655 Hs.469060 NM_019896 POLE4 YHHQ1|p12 polymerase (DNA-directed), epsilon 4, accessory subunit protein-coding 561_WT_peak_7112 chr8 110552143 110552626 + 116 NA promoter-TSS (NM_004215) promoter-TSS (NM_004215) 80 NM_004215 9166 Hs.409368 NM_004215 HPRD:05775 EBAG9 EB9|PDAF estrogen receptor binding site associated, antigen, 9 protein-coding 561_WT_peak_6764 chr7 99097714 99098011 + 116 NA promoter-TSS (NM_032164) promoter-TSS (NM_032164) 15 NM_032164 84124 Hs.386324 NM_032164 HPRD:18333 ZNF394 ZKSCAN14|ZSCAN46 zinc finger protein 394 protein-coding 561_WT_peak_7602 chrX 110924416 110924786 + 116 NA promoter-TSS (NM_001257239) promoter-TSS (NM_001257239) 203 NM_001257241 79868 Hs.443061 NM_018466 HPRD:06542 ALG13 CDG1S|CXorf45|GLT28D1|MDS031|TDRD13|YGL047W ALG13, UDP-N-acetylglucosaminyltransferase subunit protein-coding 561_WT_peak_4597 chr20 30697186 30697800 + 116 NA 5' UTR (NM_014742, exon 1 of 18) 5' UTR (NM_014742, exon 1 of 18) 184 NM_014742 9777 Hs.654665 NM_014742 HPRD:15514 TM9SF4 dJ836N17.2 transmembrane 9 superfamily protein member 4 protein-coding 561_WT_peak_7573 chrX 70401501 70401691 + 116 NA Intergenic Intergenic -33466 NM_001097642 2705 Hs.333303 NM_000166 HPRD:02367 GJB1 CMTX|CMTX1|CX32 gap junction protein, beta 1, 32kDa protein-coding 561_WT_peak_4945 chr22 42229132 42229466 + 116 NA exon (NM_004599, exon 1 of 19) exon (NM_004599, exon 1 of 19) 216 NM_004599 6721 Hs.443258 NM_004599 HPRD:02726 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 561_WT_peak_4180 chr2 86790569 86790843 + 116 NA promoter-TSS (NM_001193517) promoter-TSS (NM_001193517) -86 NR_036454 51652 Hs.591582 NM_016079 HPRD:15650 CHMP3 NEDF|VPS24 charged multivesicular body protein 3 protein-coding 561_WT_peak_987 chr10 48133159 48133414 + 116 NA Intergenic Intergenic -22657 NR_033407 1517 Hs.568350 NR_033407 CTSLP2 CTSL1P2|CTSL1P5|CTSL1P7|CTSLL2|CTSLL5|CTSLL7|CTSLP5|CTSLP7|bA144G6.6|bA342C24.4 cathepsin L pseudogene 2 pseudo 561_WT_peak_3270 chr17 57232224 57232514 + 116 NA promoter-TSS (NM_018304) promoter-TSS (NM_018304) 431 NM_001100595 348235 Hs.463607 NM_182620 HPRD:13306 SKA2 FAM33A spindle and kinetochore associated complex subunit 2 protein-coding 561_WT_peak_3771 chr19 41768471 41769485 + 116 NA intron (NM_144732, intron 1 of 14) intron (NM_144732, intron 1 of 14) 597 NM_144732 11100 Hs.155218 NM_007040 HPRD:10428 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 protein-coding 561_WT_peak_494 chr1 149811989 149812600 + 116 NA TTS (NM_021059) TTS (NM_021059) 471 NM_021059 126961 Hs.647745 NM_021059 HIST2H3C H3|H3.2|H3/M|H3F2|H3FM|H3FN histone cluster 2, H3c protein-coding 561_WT_peak_3297 chr17 61926113 61926431 + 116 NA Intergenic CpG -5921 NM_001098426 6603 Hs.250581 NM_003077 HPRD:03439 SMARCD2 BAF60B|CRACD2|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 561_WT_peak_5039 chr3 25824613 25824857 + 116 NA intron (NM_001145294, intron 1 of 11) CpG 254 NM_018297 55768 Hs.368960 NM_018297 HPRD:10118 NGLY1 CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 561_WT_peak_630 chr1 174128666 174129131 + 116 NA promoter-TSS (NR_121197) promoter-TSS (NR_121197) 346 NM_014857 9910 Hs.585378 NM_014857 HPRD:16464 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1-like protein-coding 561_WT_peak_3682 chr19 18654796 18655129 + 116 NA promoter-TSS (NM_012181) promoter-TSS (NM_012181) -579 NM_012181 23770 Hs.173464 NM_012181 HPRD:05327 FKBP8 FKBP38|FKBPr38 FK506 binding protein 8, 38kDa protein-coding 561_WT_peak_183 chr1 36929748 36930192 + 116 NA promoter-TSS (NM_031280) promoter-TSS (NM_031280) 70 NM_031280 64960 Hs.352839 NM_031280 HPRD:11372 MRPS15 MPR-S15|RPMS15|S15mt mitochondrial ribosomal protein S15 protein-coding 561_WT_peak_5695 chr5 39074222 39074467 + 116 NA intron (NM_001285439, intron 1 of 38) CpG-20643 166 NM_001285440 253260 Hs.407926 NM_152756 HPRD:10682 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR, complex 2 protein-coding 561_WT_peak_7112-2 chr8 110552750 110552863 + 116 NA promoter-TSS (NM_001278938) promoter-TSS (NM_001278938) -49 NM_001278938 9166 Hs.409368 NM_004215 HPRD:05775 EBAG9 EB9|PDAF estrogen receptor binding site associated, antigen, 9 protein-coding 561_WT_peak_5122 chr3 52312469 52312774 + 116 NA promoter-TSS (NM_025222) promoter-TSS (NM_025222) 38 NM_025222 80335 Hs.194110 NM_025222 HPRD:15183 WDR82 MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A WD repeat domain 82 protein-coding 561_WT_peak_4222 chr2 97303981 97304305 + 116 NA promoter-TSS (NM_001115016) promoter-TSS (NM_001115016) -27 NR_047654 55683 Hs.516341 NM_017991 HPRD:07643 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 561_WT_peak_1684 chr12 49524752 49525157 + 116 NA intron (NM_006082, intron 1 of 3) CpG 350 NM_006082 10376 Hs.524390 NM_006082 HPRD:03960 TUBA1B K-ALPHA-1 tubulin, alpha 1b protein-coding 561_WT_peak_3422 chr18 3624904 3625143 + 116 NA intron (NM_001242764, intron 4 of 9) intron (NM_001242764, intron 4 of 9) 21288 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 561_WT_peak_6772 chr7 99775308 99775569 + 116 NA promoter-TSS (NM_012447) promoter-TSS (NM_012447) 72 NM_001282718 10734 Hs.592283 NM_012447 HPRD:10253 STAG3 - stromal antigen 3 protein-coding 561_WT_peak_1393 chr11 67980619 67980794 + 116 NA promoter-TSS (NM_016028) promoter-TSS (NM_016028) 78 NM_016028 51111 Hs.632120 NM_016028 HPRD:11616 SUV420H1 CGI85|KMT5B suppressor of variegation 4-20 homolog 1 (Drosophila) protein-coding 561_WT_peak_6200 chr6 27125822 27126009 + 116 NA Intergenic tRNA-His-CAY_|tRNA|tRNA 10510 NR_036096 100422934 NR_036096 miRBase:MI0014167 MIR3143 - microRNA 3143 ncRNA 561_WT_peak_1734 chr12 57873538 57873941 + 116 NA promoter-TSS (NM_032496) promoter-TSS (NM_032496) -106 NM_032496 64333 Hs.437126 NM_032496 HPRD:06449 ARHGAP9 10C|RGL1 Rho GTPase activating protein 9 protein-coding 561_WT_peak_1944 chr13 21347482 21348025 + 116 NA intron (NM_174928, intron 1 of 4) CpG 304 NM_174928 221143 Hs.26674 NM_174928 HPRD:14135 N6AMT2 ESP13 N-6 adenine-specific DNA methyltransferase 2 (putative) protein-coding 561_WT_peak_1744 chr12 58334896 58335091 + 115 NA promoter-TSS (NM_033276) promoter-TSS (NM_033276) -452 NM_033276 91419 Hs.61188 NM_033276 HPRD:17256 XRCC6BP1 KUB3 XRCC6 binding protein 1 protein-coding 561_WT_peak_6948 chr8 23104086 23104511 + 115 NA exon (NM_152272, exon 2 of 11) exon (NM_152272, exon 2 of 11) 3148 NM_152272 91782 Hs.5019 NM_152272 HPRD:14534 CHMP7 - charged multivesicular body protein 7 protein-coding 561_WT_peak_3744 chr19 37329076 37329292 + 115 NA promoter-TSS (NM_001242802) promoter-TSS (NM_001242802) 102 NM_206894 388536 Hs.282067 NM_206894 ZNF790 - zinc finger protein 790 protein-coding 561_WT_peak_3021 chr17 7590739 7590985 + 115 NA promoter-TSS (NM_001143992) promoter-TSS (NM_001143992) 6 NM_001126112 7157 Hs.437460 NM_000546 HPRD:01859 TP53 BCC7|LFS1|P53|TRP53 tumor protein p53 protein-coding 561_WT_peak_7154 chr8 131054605 131054988 + 115 NA Intergenic Intergenic -25899 NR_046361 51571 Hs.126941 NM_016623 HPRD:13313 FAM49B L1 family with sequence similarity 49, member B protein-coding 561_WT_peak_3908 chr19 56904744 56905038 + 115 NA promoter-TSS (NR_037161) promoter-TSS (NR_037161) -2 NM_144690 147948 Hs.244391 NM_144690 HPRD:15859 ZNF582 - zinc finger protein 582 protein-coding 561_WT_peak_3689 chr19 19626687 19627175 + 115 NA promoter-TSS (NM_032037) promoter-TSS (NM_032037) -88 NM_015965 51079 Hs.534453 NM_015965 NDUFA13 B16.6|CDA016|GRIM-19|GRIM19 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 protein-coding 561_WT_peak_3624 chr19 11071061 11071367 + 115 NA promoter-TSS (NM_001128849) promoter-TSS (NM_001128849) -384 NM_003072 6597 Hs.327527 NM_003072 HPRD:04459 SMARCA4 BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 561_WT_peak_1871 chr12 116997064 116997864 + 115 NA intron (NM_001085481, intron 1 of 1) intron (NM_001085481, intron 1 of 1) 278 NM_001085481 643246 Hs.506947 NM_001085481 ENSG00000171471 MAP1LC3B2 ATG8G microtubule-associated protein 1 light chain 3 beta 2 protein-coding 561_WT_peak_757 chr1 226595436 226595897 + 115 NA 5' UTR (NM_001618, exon 1 of 23) 5' UTR (NM_001618, exon 1 of 23) 135 NM_001618 142 Hs.177766 NM_001618 HPRD:01435 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly (ADP-ribose) polymerase 1 protein-coding 561_WT_peak_7071 chr8 96037137 96037488 + 115 NA promoter-TSS (NM_152416) promoter-TSS (NM_152416) 98 NM_152416 137682 Hs.729144 NM_152416 HPRD:17553 NDUFAF6 C8orf38 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 protein-coding 561_WT_peak_7576 chrX 70752464 70752472 + 115 NA promoter-TSS (NM_181672) promoter-TSS (NM_181672) -444 NM_181673 8473 Hs.405410 NM_003605 HPRD:02222 OGT HRNT1|O-GLCNAC O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 561_WT_peak_197 chr1 40840377 40840556 + 115 NA intron (NM_001198978, intron 1 of 9) intron (NM_001198978, intron 1 of 9) 161 NM_001198978 64744 Hs.15200 NM_022733 HPRD:12442 SMAP2 SMAP1L small ArfGAP2 protein-coding 561_WT_peak_6995 chr8 42011282 42011448 + 115 NA intron (NM_006803, intron 1 of 8) intron (NM_006803, intron 1 of 8) 901 NM_006803 10947 Hs.654529 NM_006803 HPRD:09801 AP3M2 AP47B|CLA20|P47B adaptor-related protein complex 3, mu 2 subunit protein-coding 561_WT_peak_5925 chr5 134073987 134074214 + 115 NA promoter-TSS (NM_001745) promoter-TSS (NM_001745) -70 NM_001745 819 Hs.529846 NM_001745 HPRD:03073 CAMLG CAML calcium modulating ligand protein-coding 561_WT_peak_5090 chr3 47029326 47029584 + 115 NA intron (NM_015175, intron 1 of 53) intron (NM_015175, intron 1 of 53) -5955 NM_144716 151903 Hs.631918 NM_144716 HPRD:13007 CCDC12 - coiled-coil domain containing 12 protein-coding 561_WT_peak_5105 chr3 49066645 49066878 + 115 NA TTS (NM_017730) TTS (NM_017730) 114 NM_000884 3615 Hs.654400 NM_000884 HPRD:00895 IMPDH2 IMPD2|IMPDH-II IMP (inosine 5'-monophosphate) dehydrogenase 2 protein-coding 561_WT_peak_2502 chr15 60690000 60690322 + 115 NA promoter-TSS (NM_001136015) promoter-TSS (NM_001136015) 24 NM_001002858 302 Hs.511605 NM_004039 HPRD:01061 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 561_WT_peak_1069 chr10 79793637 79793829 + 115 NA intron (NM_033022, intron 1 of 5) CpG 215 NM_033022 6229 Hs.280130 NM_001026 HPRD:03877 RPS24 DBA3|S24 ribosomal protein S24 protein-coding 561_WT_peak_858 chr10 5726325 5726532 + 115 NA promoter-TSS (NM_017782) promoter-TSS (NM_017782) -373 NM_017782 54906 Hs.610717 NM_017782 ENSG00000108021 FAM208B C10orf18|bA318E3.2 family with sequence similarity 208, member B protein-coding 561_WT_peak_622 chr1 172616128 172616374 + 115 NA Intergenic Intergenic -11934 NM_000639 356 Hs.2007 NM_000639 HPRD:00610 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6 Fas ligand (TNF superfamily, member 6) protein-coding 561_WT_peak_6244 chr6 28891084 28891699 + 115 NA exon (NM_006510, exon 1 of 8).3 exon (NM_006510, exon 1 of 8).3 377 NM_006510 5987 Hs.440382 NM_006510 HPRD:15996 TRIM27 RFP|RNF76 tripartite motif containing 27 protein-coding 561_WT_peak_5978 chr5 147763143 147763690 + 115 NA promoter-TSS (NM_030793) promoter-TSS (NM_030793) -3 NR_105057 102546294 Hs.660461 NR_105057 LOC102546294 - uncharacterized LOC102546294 ncRNA 561_WT_peak_3296 chr17 61920022 61920228 + 115 NA 5' UTR (NM_001098426, exon 1 of 13) 5' UTR (NM_001098426, exon 1 of 13) 226 NM_001098426 6603 Hs.250581 NM_003077 HPRD:03439 SMARCD2 BAF60B|CRACD2|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 561_WT_peak_3542 chr19 246882 247348 + 115 NA Intergenic TAR1|Satellite|telo 44054 NM_177543 8612 Hs.465506 NM_003712 HPRD:06180 PPAP2C LPP2|PAP-2c|PAP2-g phosphatidic acid phosphatase type 2C protein-coding 561_WT_peak_4353 chr2 166810229 166810837 + 115 NA promoter-TSS (NM_024753) promoter-TSS (NM_024753) -185 NM_024753 79809 Hs.310672 NM_024753 HPRD:07752 TTC21B ATD4|IFT139|JBTS11|NPHP12|SRTD4|THM1 tetratricopeptide repeat domain 21B protein-coding 561_WT_peak_1391 chr11 67381395 67381846 + 115 NA intron (NR_033791, intron 4 of 4) intron (NR_033791, intron 4 of 4) 1515 NR_033791 390213 Hs.523838 NR_033791 DOC2GP - double C2-like domains, gamma, pseudogene pseudo 561_WT_peak_6453 chr6 117996293 117996854 + 115 NA promoter-TSS (NM_138459) promoter-TSS (NM_138459) -44 NM_138459 116150 Hs.289008 NM_138459 HPRD:12894 NUS1 C6orf68|MGC:7199|NgBR|TANGO14 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) protein-coding 561_WT_peak_2525 chr15 67383705 67383944 + 115 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) 25629 NM_005902 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 561_WT_peak_7576-2 chrX 70752517 70753063 + 115 NA promoter-TSS (NM_181672) promoter-TSS (NM_181672) -122 NM_181673 8473 Hs.405410 NM_003605 HPRD:02222 OGT HRNT1|O-GLCNAC O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 561_WT_peak_6170 chr6 26327747 26327971 + 115 NA Intergenic tRNA-Ser-TCY|tRNA|tRNA -37528 NM_001197249 11118 Hs.376046 NM_007047 HPRD:12547 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin, subfamily 3, member A2 protein-coding 561_WT_peak_2492 chr15 55700376 55700835 + 115 NA promoter-TSS (NM_001198784) promoter-TSS (NM_001198784) -31 NM_004748 9236 Hs.285051 NM_004748 HPRD:09895 CCPG1 CPR8 cell cycle progression 1 protein-coding 561_WT_peak_3729 chr19 36208363 36208588 + 115 NA promoter-TSS (NM_014727) promoter-TSS (NM_014727) -446 NM_014727 9757 Hs.92236 NM_014727 HPRD:06017 KMT2B HRX2|MLL1B|MLL2|MLL4|TRX2|WBP-7|WBP7 lysine (K)-specific methyltransferase 2B protein-coding 561_WT_peak_3348 chr17 73975630 73975863 + 115 NA promoter-TSS (NM_004035) promoter-TSS (NM_004035) -231 NM_001185039 51 Hs.464137 NM_004035 HPRD:02030 ACOX1 ACOX|PALMCOX|SCOX acyl-CoA oxidase 1, palmitoyl protein-coding 561_WT_peak_5219 chr3 119187589 119188028 + 115 NA promoter-TSS (NM_152305) promoter-TSS (NM_152305) 23 NR_024265 56983 Hs.231750 NM_152305 HPRD:17475 POGLUT1 C3orf9|CLP46|KDELCL1|KTELC1|MDSRP|Rumi|hCLP46 protein O-glucosyltransferase 1 protein-coding 561_WT_peak_2384 chr14 103851767 103852163 + 115 NA 5' UTR (NM_001128919, exon 1 of 17) 5' UTR (NM_001128919, exon 1 of 17) 264 NM_001128920 4140 Hs.35828 NM_002376 HPRD:04058 MARK3 CTAK1|KP78|PAR1A|Par-1a MAP/microtubule affinity-regulating kinase 3 protein-coding 561_WT_peak_6869 chr7 139045384 139045795 + 115 NA intron (NM_016019, intron 1 of 9) intron (NM_016019, intron 1 of 9) 997 NM_001270643 51631 Hs.731488 NM_016019 HPRD:17456 LUC7L2 CGI-74|LUC7B2 LUC7-like 2 (S. cerevisiae) protein-coding 561_WT_peak_7191 chr8 145747882 145748199 + 115 NA exon (NM_001024678, exon 5 of 5) exon (NM_001024678, exon 5 of 5) 4376 NM_001024678 441381 Hs.740859 NM_001024678 HPRD:18651 LRRC24 LRRC14OS leucine rich repeat containing 24 protein-coding 561_WT_peak_7022 chr8 54934750 54934920 + 115 NA non-coding (NR_109901, exon 1 of 12) non-coding (NR_109901, exon 1 of 12) 181 NM_201437 6917 Hs.491745 NM_006756 HPRD:03252 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A (SII), 1 protein-coding 561_WT_peak_4284 chr2 122513167 122513470 + 115 NA non-coding (NR_048559, exon 1 of 4) non-coding (NR_048559, exon 1 of 4) 197 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 561_WT_peak_7195 chr8 146277883 146278078 + 115 NA exon (NM_023080, exon 2 of 5) exon (NM_023080, exon 2 of 5) 156 NM_023080 65265 Hs.169615 NM_023080 HPRD:07951 C8orf33 - chromosome 8 open reading frame 33 protein-coding 561_WT_peak_4846 chr22 21356189 21356445 + 115 NA promoter-TSS (NM_001008695) promoter-TSS (NM_001008695) 87 NM_001008695 80764 Hs.512756 NM_030573 HPRD:15500 THAP7 - THAP domain containing 7 protein-coding 561_WT_peak_3143 chr17 36857988 36858517 + 115 NA TTS (NR_039887) TTS (NR_039887) 332 NR_039887 100616203 NR_039887 miRBase:MI0017371 MIR4734 - microRNA 4734 ncRNA 561_WT_peak_3680 chr19 18391945 18392294 + 115 NA promoter-TSS (NR_036155) promoter-TSS (NR_036155) 347 NM_005354 3727 Hs.2780 NM_005354 HPRD:01304 JUND AP-1 jun D proto-oncogene protein-coding 561_WT_peak_7184 chr8 144911307 144911586 + 115 NA promoter-TSS (NM_001271100) promoter-TSS (NM_001271100) 110 NM_078480 22827 Hs.521924 NM_014281 HPRD:18051 PUF60 FIR|RoBPI|SIAHBP1|VRJS poly-U binding splicing factor 60KDa protein-coding 561_WT_peak_6995-2 chr8 42011716 42011789 + 115 NA intron (NM_006803, intron 1 of 8) intron (NM_006803, intron 1 of 8) 1288 NM_006803 10947 Hs.654529 NM_006803 HPRD:09801 AP3M2 AP47B|CLA20|P47B adaptor-related protein complex 3, mu 2 subunit protein-coding 561_WT_peak_2833 chr16 46654981 46655262 + 115 NA intron (NM_024745, intron 1 of 12) CpG 190 NM_024745 79801 Hs.123253 NM_024745 HPRD:11557 SHCBP1 PAL SHC SH2-domain binding protein 1 protein-coding 561_WT_peak_1343 chr11 64889755 64889992 + 115 NA promoter-TSS (NM_001997) promoter-TSS (NM_001997) 157 NR_037568 740 Hs.744882 NM_004927 HPRD:06037 MRPL49 C11orf4|L49mt|MRP-L49|NOF|NOF1 mitochondrial ribosomal protein L49 protein-coding 561_WT_peak_2872 chr16 67867602 67868010 + 114 NA 5' UTR (NM_025082, exon 4 of 16) 5' UTR (NM_025082, exon 4 of 16) -8407 NM_020457 57215 Hs.632200 NM_020457 HPRD:11629 THAP11 CTG-B43a|CTG-B45d|RONIN THAP domain containing 11 protein-coding 561_WT_peak_6229 chr6 27839887 27840405 + 114 NA promoter-TSS (NM_003533) promoter-TSS (NM_003533) -47 NM_003533 8354 Hs.132854 NM_003533 HPRD:11908 HIST1H3I H3.f|H3/f|H3FF histone cluster 1, H3i protein-coding 561_WT_peak_6876 chr7 142506455 142506927 + 114 NA Intergenic Intergenic 26783 NM_002770 5645 Hs.449281 NM_002770 PRSS2 TRY2|TRY8|TRYP2 protease, serine, 2 (trypsin 2) protein-coding 561_WT_peak_3387 chr17 79632736 79633298 + 114 NA promoter-TSS (NM_199287) promoter-TSS (NM_199287) 601 NM_001039842 339229 Hs.405942 NM_001039842 ENSG00000204237 OXLD1 C17orf90 oxidoreductase-like domain containing 1 protein-coding 561_WT_peak_3679 chr19 18390478 18390524 + 114 NA TTS (NM_005354) TTS (NM_005354) 1965 NM_005354 3727 Hs.2780 NM_005354 HPRD:01304 JUND AP-1 jun D proto-oncogene protein-coding 561_WT_peak_3223 chr17 45908683 45909040 + 114 NA promoter-TSS (NM_033413) promoter-TSS (NM_033413) 46 NM_148887 124995 Hs.347535 NM_145255 HPRD:14738 MRPL10 L10MT|MRP-L10|MRP-L8|MRPL8|RPML8 mitochondrial ribosomal protein L10 protein-coding 561_WT_peak_2127 chr14 23030697 23030915 + 114 NA Intergenic Intergenic 27337 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 561_WT_peak_4283 chr2 122407344 122407583 + 114 NA promoter-TSS (NM_015282) promoter-TSS (NM_015282) -102 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 561_WT_peak_1440 chr11 85375787 85376334 + 114 NA non-coding (NR_028027, exon 1 of 4) non-coding (NR_028027, exon 1 of 4) 122 NR_028027 58487 Hs.535319 NM_021212 HPRD:07340 CREBZF SMILE|ZF CREB/ATF bZIP transcription factor protein-coding 561_WT_peak_3158 chr17 37886864 37887047 + 114 NA promoter-TSS (NM_032339) promoter-TSS (NM_032339) -167 NM_032339 84299 Hs.333526 NM_032339 HPRD:12681 MIEN1 C17orf37|C35|ORB3|RDX12|XTP4 migration and invasion enhancer 1 protein-coding 561_WT_peak_36 chr1 6663956 6664160 + 114 NA Intergenic Intergenic -1129 NM_014851 9903 Hs.7764 NM_014851 HPRD:17239 KLHL21 - kelch-like family member 21 protein-coding 561_WT_peak_1237 chr11 30344272 30344586 + 114 NA promoter-TSS (NM_152316) promoter-TSS (NM_152316) -220 NM_152316 120534 Hs.502208 NM_152316 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP-ribosylation factor-like 14 effector protein protein-coding 561_WT_peak_731 chr1 219347222 219347454 + 114 NA promoter-TSS (NR_038845) promoter-TSS (NR_038845) 165 NM_001300769 127018 Hs.657617 NM_138794 HPRD:14335 LYPLAL1 - lysophospholipase-like 1 protein-coding 561_WT_peak_4028 chr2 38604198 38604414 + 114 NA exon (NM_022374, exon 1 of 13) exon (NM_022374, exon 1 of 13) 126 NM_022374 64225 Hs.727652 NM_022374 HPRD:10662 ATL2 ARL3IP2|ARL6IP2|atlastin2 atlastin GTPase 2 protein-coding 561_WT_peak_221 chr1 45987406 45987747 + 114 NA promoter-TSS (NM_002574) promoter-TSS (NM_002574) 34 NM_002574 5052 Hs.180909 NM_002574 HPRD:01458 PRDX1 MSP23|NKEF-A|NKEFA|PAG|PAGA|PAGB|PRX1|PRXI|TDPX2 peroxiredoxin 1 protein-coding 561_WT_peak_6783 chr7 102056105 102056315 + 114 NA intron (NM_024653, intron 5 of 5) MIR|SINE|MIR -17767 NM_001126340 80228 Hs.363308 NM_032831 HPRD:09860 ORAI2 C7orf19|CBCIP2|MEM142B|TMEM142B ORAI calcium release-activated calcium modulator 2 protein-coding 561_WT_peak_7297 chr9 73178558 73178841 + 114 NA intron (NM_001007471, intron 21 of 24) intron (NM_001007471, intron 21 of 24) -149126 NM_001206 687 Hs.150557 NM_001206 HPRD:04211 KLF9 BTEB|BTEB1 Kruppel-like factor 9 protein-coding 561_WT_peak_485 chr1 149298484 149298716 + 114 NA Intergenic tRNA-Val-GTG|tRNA|tRNA 11149 NR_111934 644634 Hs.723057 NR_111934 FAM231D - family with sequence similarity 231, member D ncRNA 561_WT_peak_3950 chr2 3622596 3623158 + 114 NA promoter-TSS (NM_001011) promoter-TSS (NM_001011) 24 NM_001011 6201 Hs.534346 NM_001011 HPRD:04712 RPS7 DBA8|S7 ribosomal protein S7 protein-coding 561_WT_peak_6586 chr7 6865930 6866115 + 114 NA promoter-TSS (NM_198097) promoter-TSS (NM_198097) -96 NM_198097 221960 Hs.567779 NM_198097 HPRD:12916 CCZ1B C7orf28B|H_NH0577018.2 CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) protein-coding 561_WT_peak_2462 chr15 45011760 45012087 + 114 NA Intergenic MER57B2|LTR|ERV1 8238 NM_004048 567 Hs.534255 NM_004048 B2M - beta-2-microglobulin protein-coding 561_WT_peak_613 chr1 169661980 169662479 + 114 NA intron (NM_000655, intron 8 of 8) intron (NM_000655, intron 8 of 8) 15768 NR_029467 6402 Hs.728756 NM_000655 ENSG00000188404 SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L protein-coding 561_WT_peak_4329 chr2 152118039 152118324 + 114 NA intron (NM_198557, intron 1 of 3) CpG 208 NM_198557 375287 Hs.302442 NM_198557 HPRD:10992 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 561_WT_peak_6112 chr6 16421060 16421468 + 114 NA intron (NM_001128164, intron 6 of 7) intron (NM_001128164, intron 6 of 7) 182453 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 561_WT_peak_2658 chr16 2390900 2391188 + 114 NA promoter-TSS (NM_001089) promoter-TSS (NM_001089) 121 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene pseudo 561_WT_peak_3620 chr19 10764098 10764620 + 114 NA promoter-TSS (NM_004516) promoter-TSS (NM_004516) 189 NR_024333 147727 Hs.631616 NR_024333 ENSG00000267100 ILF3-AS1 - ILF3 antisense RNA 1 (head to head) ncRNA 561_WT_peak_6985 chr8 38243418 38243832 + 114 NA promoter-TSS (NM_001199659) promoter-TSS (NM_001199659) -334 NM_001286821 137994 Hs.696457 NM_144652 HPRD:08060 LETM2 - leucine zipper-EF-hand containing transmembrane protein 2 protein-coding 561_WT_peak_6854 chr7 134895902 134896252 + 114 NA intron (NM_014149, intron 1 of 14) CpG 239 NM_014149 29062 Hs.459858 NM_014149 HPRD:11035 WDR91 - WD repeat domain 91 protein-coding 561_WT_peak_3679-2 chr19 18390741 18391547 + 114 NA 3' UTR (NM_005354, exon 1 of 1) 3' UTR (NM_005354, exon 1 of 1) 1322 NM_005354 3727 Hs.2780 NM_005354 HPRD:01304 JUND AP-1 jun D proto-oncogene protein-coding 561_WT_peak_5791 chr5 68664949 68665487 + 114 NA promoter-TSS (NM_001278622) promoter-TSS (NM_001278622) 94 NM_133343 5884 Hs.16184 NM_002873 HPRD:09124 RAD17 CCYC|HRAD17|R24L|RAD17SP|RAD24 RAD17 homolog (S. pombe) protein-coding 561_WT_peak_5047 chr3 31573300 31573845 + 114 NA promoter-TSS (NM_178862) promoter-TSS (NM_178862) -421 NM_178862 201595 Hs.475812 NM_178862 STT3B CDG1X|SIMP|STT3-B STT3B, subunit of the oligosaccharyltransferase complex (catalytic) protein-coding 561_WT_peak_3757 chr19 39340206 39340696 + 114 NA exon (NM_001533, exon 1 of 13) exon (NM_001533, exon 1 of 13) 166 NM_001533 3191 Hs.644906 NM_001533 HPRD:04360 HNRNPL HNRPL|hnRNP-L heterogeneous nuclear ribonucleoprotein L protein-coding 561_WT_peak_847 chr10 3825629 3826264 + 114 NA intron (NM_001300, intron 1 of 3) intron (NM_001300, intron 1 of 3) 1527 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 561_WT_peak_3738 chr19 36705609 36706403 + 114 NA promoter-TSS (NM_152477) promoter-TSS (NM_152477) -20 NM_001042474 147929 Hs.596338 NM_152477 HPRD:15846 ZNF565 - zinc finger protein 565 protein-coding 561_WT_peak_2293 chr14 75593313 75594002 + 114 NA 5' UTR (NM_033116, exon 1 of 22) 5' UTR (NM_033116, exon 1 of 22) 121 NM_033116 91754 Hs.7200 NM_033116 HPRD:11386 NEK9 NERCC|NERCC1|Nek8 NIMA-related kinase 9 protein-coding 561_WT_peak_737 chr1 222817293 222817486 + 114 NA promoter-TSS (NM_001300867) promoter-TSS (NM_001300867) -256 NM_001300867 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 melanoma inhibitory activity family, member 3 protein-coding 561_WT_peak_839 chr1 249240413 249240601 + 114 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat 40065 NM_170725 267002 Hs.602037 NM_170725 PGBD2 - piggyBac transposable element derived 2 protein-coding 561_WT_peak_4053 chr2 44395993 44396250 + 113 NA 5' UTR (NM_177968, exon 1 of 6) 5' UTR (NM_177968, exon 1 of 6) 121 NM_001033556 5495 Hs.416769 NM_002706 HPRD:04796 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent, 1B protein-coding 561_WT_peak_5113 chr3 50388417 50388647 + 113 NA promoter-TSS (NM_006545) promoter-TSS (NM_006545) -46 NM_006545 10641 Hs.437083 NM_006545 HPRD:06147 NPRL2 NPR2|NPR2L|TUSC4 nitrogen permease regulator-like 2 (S. cerevisiae) protein-coding 561_WT_peak_3241 chr17 47817072 47817463 + 113 NA intron (NM_030802, intron 1 of 7) intron (NM_030802, intron 1 of 7) 24251 NM_030802 81558 Hs.514308 NM_030802 HPRD:17432 FAM117A - family with sequence similarity 117, member A protein-coding 561_WT_peak_4793 chr21 38640171 38640579 + 113 NA promoter-TSS (NM_006052) promoter-TSS (NM_006052) -542 NM_006052 10311 Hs.369488 NM_006052 HPRD:10390 DSCR3 DCRA|DSCRA Down syndrome critical region gene 3 protein-coding 561_WT_peak_399 chr1 115300141 115300942 + 113 NA intron (NM_001007553, intron 1 of 19) intron (NM_001007553, intron 1 of 19) 130 NM_001242892 7812 Hs.69855 NM_007158 HPRD:15949 CSDE1 D1S155E|UNR cold shock domain containing E1, RNA-binding protein-coding 561_WT_peak_2269 chr14 69865071 69865524 + 113 NA promoter-TSS (NM_001252148) promoter-TSS (NM_001252148) -88 NM_001252150 55334 Hs.432690 NM_018375 HPRD:15387 SLC39A9 ZIP-9|ZIP9 solute carrier family 39, member 9 protein-coding 561_WT_peak_836 chr1 249200373 249200699 + 113 NA promoter-TSS (NM_170725) promoter-TSS (NM_170725) 94 NM_170725 267002 Hs.602037 NM_170725 PGBD2 - piggyBac transposable element derived 2 protein-coding 561_WT_peak_4923 chr22 39925250 39925423 + 113 NA 3' UTR (NM_194326, exon 4 of 4) 3' UTR (NM_194326, exon 4 of 4) 3524 NM_194326 91582 Hs.526933 NM_194326 HPRD:14674 RPS19BP1 AROS|S19BP|dJ1104E15.4 ribosomal protein S19 binding protein 1 protein-coding 561_WT_peak_1020 chr10 69609152 69609432 + 113 NA Intergenic Intergenic -11355 NM_021800 56521 Hs.260720 NM_021800 HPRD:06930 DNAJC12 JDP1 DnaJ (Hsp40) homolog, subfamily C, member 12 protein-coding 561_WT_peak_6515 chr6 151610582 151610779 + 113 NA intron (NM_005100, intron 2 of 4) intron (NM_005100, intron 2 of 4) -35986 NM_144497 9590 Hs.371240 NM_005100 HPRD:05263 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 561_WT_peak_5704 chr5 40429621 40429884 + 113 NA Intergenic Intergenic -250280 NM_000958 5734 Hs.199248 NM_000958 HPRD:03350 PTGER4 EP4|EP4R prostaglandin E receptor 4 (subtype EP4) protein-coding 561_WT_peak_849 chr10 3827696 3828346 + 113 NA promoter-TSS (NR_027653) promoter-TSS (NR_027653) -548 NM_001160124 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 561_WT_peak_912 chr10 22624188 22624547 + 113 NA Intergenic CpG -10007 NM_172242 9576 Hs.655170 NM_012443 HPRD:09305 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 561_WT_peak_6728 chr7 75677218 75677671 + 113 NA promoter-TSS (NM_016086) promoter-TSS (NM_016086) 107 NM_005918 4191 Hs.520967 NM_005918 HPRD:01099 MDH2 M-MDH|MDH|MGC:3559|MOR1 malate dehydrogenase 2, NAD (mitochondrial) protein-coding 561_WT_peak_5854 chr5 94128989 94129258 + 113 NA intron (NM_001297777, intron 15 of 19) intron (NM_001297777, intron 15 of 19) 174732 NM_032290 84250 Hs.657315 NM_032290 HPRD:08538 ANKRD32 BRCTD1|BRCTx ankyrin repeat domain 32 protein-coding 561_WT_peak_1779 chr12 76953280 76953607 + 112 NA 5' UTR (NM_020841, exon 1 of 24) 5' UTR (NM_020841, exon 1 of 24) 146 NM_020841 114882 Hs.430849 NM_020841 HPRD:09478 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein-like 8 protein-coding 561_WT_peak_1488 chr11 114270794 114271180 + 112 NA promoter-TSS (NM_001286048) promoter-TSS (NM_001286048) -264 NM_001286045 10179 Hs.7527 NM_016090 HPRD:11488 RBM7 - RNA binding motif protein 7 protein-coding 561_WT_peak_5737 chr5 49963427 49963646 + 112 NA intron (NM_024615, intron 1 of 25) CpG 764 NM_001178056 79668 Hs.369581 NM_024615 HPRD:07960 PARP8 ARTD16|pART16 poly (ADP-ribose) polymerase family, member 8 protein-coding 561_WT_peak_7044 chr8 67579358 67579760 + 112 NA promoter-TSS (NM_001204173) promoter-TSS (NM_001204173) -107 NM_025054 80124 Hs.632066 NM_025054 HPRD:15645 VCPIP1 DUBA3|VCIP135 valosin containing protein (p97)/p47 complex interacting protein 1 protein-coding 561_WT_peak_5435 chr4 26320946 26321426 + 112 NA promoter-TSS (NM_005349) promoter-TSS (NM_005349) -146 NM_203283 3516 Hs.479396 NM_005349 HPRD:00920 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 561_WT_peak_5494 chr4 57333716 57334124 + 112 NA intron (NM_001267722, intron 1 of 16) CpG 158 NM_006947 6731 Hs.237825 NM_006947 SRP72 BMFF|BMFS1|HEL103 signal recognition particle 72kDa protein-coding 561_WT_peak_7371 chr9 101018123 101018392 + 112 NA promoter-TSS (NM_001267571) promoter-TSS (NM_001267571) -254 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family, member 2 protein-coding 561_WT_peak_2283 chr14 74225525 74225806 + 112 NA TTS (NR_039727) TTS (NR_039727) 215 NR_039727 100616158 NR_039727 miRBase:MI0016868 MIR4505 - microRNA 4505 ncRNA 561_WT_peak_789 chr1 231473320 231473554 + 112 NA promoter-TSS (NM_032018) promoter-TSS (NM_032018) 141 NM_175876 149371 Hs.356198 NM_175876 HPRD:09943 EXOC8 EXO84|Exo84p|SEC84 exocyst complex component 8 protein-coding 561_WT_peak_3426 chr18 9095017 9095094 + 112 NA Intergenic Intergenic -7573 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 561_WT_peak_7471 chr9 135906127 135906515 + 112 NA 5' UTR (NM_001286709, exon 1 of 9) 5' UTR (NM_001286709, exon 1 of 9) 259 NM_001122823 9328 Hs.495417 NM_012087 HPRD:16077 GTF3C5 TFIIIC63|TFIIICepsilon|TFiiiC2-63 general transcription factor IIIC, polypeptide 5, 63kDa protein-coding 561_WT_peak_1079 chr10 88471013 88471324 + 112 NA intron (NM_001171610, intron 9 of 13) CpG 42742 NM_007078 11155 Hs.657271 NM_007078 HPRD:16172 LDB3 CMD1C|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP LIM domain binding 3 protein-coding 561_WT_peak_5052 chr3 33015434 33015714 + 112 NA Intergenic Intergenic 22508 NM_005508 1233 Hs.184926 NM_005508 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 chemokine (C-C motif) receptor 4 protein-coding 561_WT_peak_1271 chr11 47236069 47236572 + 112 NA promoter-TSS (NM_000107) promoter-TSS (NM_000107) -173 NM_000107 1643 Hs.700338 NM_000107 HPRD:02886 DDB2 DDBB|UV-DDB2 damage-specific DNA binding protein 2, 48kDa protein-coding 561_WT_peak_4696 chr20 52824641 52824986 + 112 NA intron (NM_002623, intron 1 of 3) CpG 311 NM_002623 5203 Hs.91161 NM_002623 HPRD:05358 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 561_WT_peak_6718 chr7 74489330 74489687 + 112 NA exon (NM_030798, exon 1 of 11) exon (NM_030798, exon 1 of 11) 209 NM_001281441 81554 Hs.529623 NM_030798 HPRD:15654 WBSCR16 - Williams-Beuren syndrome chromosome region 16 protein-coding 561_WT_peak_2090 chr13 100259006 100259202 + 112 NA intron (NR_104592, intron 1 of 9) CpG 186 NM_206808 171425 Hs.655642 NM_206808 HPRD:10838 CLYBL CLB citrate lyase beta like protein-coding 561_WT_peak_3885 chr19 53606412 53606633 + 112 NA 5' UTR (NM_033288, exon 1 of 6) 5' UTR (NM_033288, exon 1 of 6) 165 NM_198893 90338 Hs.655967 NM_033288 HPRD:11856 ZNF160 F11|HKr18|HZF5|KR18 zinc finger protein 160 protein-coding 561_WT_peak_2134 chr14 23388076 23388384 + 112 NA promoter-TSS (NR_120599) promoter-TSS (NR_120599) 166 NM_018107 55147 Hs.4997 NM_018107 HPRD:15227 RBM23 CAPERbeta|RNPC4 RNA binding motif protein 23 protein-coding 561_WT_peak_3859 chr19 50094472 50094690 + 112 NA promoter-TSS (NM_020719) promoter-TSS (NM_020719) -331 NM_020719 57479 Hs.590971 NM_020719 ENSG00000126464 PRR12 KIAA1205 proline rich 12 protein-coding 561_WT_peak_4205 chr2 95831215 95831391 + 112 NA 5' UTR (NM_001282398, exon 1 of 4) 5' UTR (NM_001282398, exon 1 of 4) 141 NM_001017396 7549 Hs.590916 NM_021088 HPRD:11834 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 561_WT_peak_873 chr10 7311279 7311586 + 112 NA intron (NM_001018039, intron 7 of 20) intron (NM_001018039, intron 7 of 20) 139871 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm-like with four mbt domains 2 protein-coding 561_WT_peak_5880 chr5 114598118 114598761 + 112 NA exon (NM_005023, exon 1 of 9) exon (NM_005023, exon 1 of 9) 130 NM_005023 5229 Hs.254006 NM_005023 HPRD:03612 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I, beta subunit protein-coding 561_WT_peak_3426-2 chr18 9095237 9095600 + 112 NA Intergenic Intergenic -7210 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 561_WT_peak_3302 chr17 62493126 62493499 + 112 NA promoter-TSS (NM_007215) promoter-TSS (NM_007215) -128 NM_007215 11232 Hs.437009 NM_007215 HPRD:09228 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB polymerase (DNA directed), gamma 2, accessory subunit protein-coding 561_WT_peak_437 chr1 145139114 145139196 + 112 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) 42748 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 561_WT_peak_437-2 chr1 145139284 145139562 + 112 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) 43016 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 561_WT_peak_3736 chr19 36605603 36606082 + 112 NA promoter-TSS (NM_001281) promoter-TSS (NM_001281) -46 NM_001281 1155 Hs.31053 NM_001281 HPRD:03196 TBCB CG22|CKAP1|CKAPI tubulin folding cofactor B protein-coding 561_WT_peak_5943 chr5 137879231 137879687 + 112 NA promoter-TSS (NM_004730) promoter-TSS (NM_004730) -470 NM_004730 2107 Hs.483494 NM_004730 HPRD:02616 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 561_WT_peak_1866 chr12 112856417 112856668 + 112 NA promoter-TSS (NM_002834) promoter-TSS (NM_002834) 6 NM_002834 5781 Hs.506852 NM_002834 HPRD:01470 PTPN11 BPTP3|CFC|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2 protein tyrosine phosphatase, non-receptor type 11 protein-coding 561_WT_peak_6927 chr8 8777287 8777566 + 112 NA Intergenic AluSz6|SINE|Alu -26295 NM_004225 9258 Hs.379414 NM_004225 HPRD:12010 MFHAS1 LRRC65|MASL1 malignant fibrous histiocytoma amplified sequence 1 protein-coding 561_WT_peak_1749 chr12 62996119 62997228 + 112 NA promoter-TSS (NR_029661) promoter-TSS (NR_029661) 541 NR_121682 283416 Hs.375881 NM_175895 HPRD:08070 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 561_WT_peak_3121 chr17 33390489 33390866 + 112 NA promoter-TSS (NM_001017368) promoter-TSS (NM_001017368) 82 NM_001017368 117584 Hs.13680 NM_057178 HPRD:11489 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE-like domain containing E3 ubiquitin protein ligase protein-coding 561_WT_peak_3103 chr17 28443807 28444114 + 112 NA promoter-TSS (NR_029945) promoter-TSS (NR_029945) 135 NM_032141 84081 Hs.462663 NM_032141 HPRD:08536 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 561_WT_peak_846 chr10 3824847 3825505 + 112 NA intron (NM_001300, intron 1 of 3) intron (NM_001300, intron 1 of 3) 2297 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 561_WT_peak_3396 chr17 80255327 80255554 + 112 NA Intergenic Intergenic 20040 NM_006137 924 Hs.36972 NM_006137 HPRD:01732 CD7 GP40|LEU-9|TP41|Tp40 CD7 molecule protein-coding 561_WT_peak_2619 chr15 93426380 93426846 + 112 NA promoter-TSS (NR_037602) promoter-TSS (NR_037602) 87 NR_037602 100507217 Hs.622504 NR_037600 ENSG00000272888 LOC100507217 - uncharacterized LOC100507217 ncRNA 561_WT_peak_3597 chr19 6590909 6591239 + 112 NA promoter-TSS (NM_001252) promoter-TSS (NM_001252) 89 NM_001252 970 Hs.501497 NM_001252 HPRD:18515 CD70 CD27L|CD27LG|TNFSF7 CD70 molecule protein-coding 561_WT_peak_4639 chr20 42286128 42286425 + 112 NA Intergenic CpG -9383 NM_002466 4605 Hs.179718 NM_002466 HPRD:03247 MYBL2 B-MYB|BMYB v-myb avian myeloblastosis viral oncogene homolog-like 2 protein-coding 561_WT_peak_1325 chr11 62623458 62623819 + 112 NA promoter-TSS (NR_002565) promoter-TSS (NR_002565) 154 NM_002394 6520 Hs.502769 NM_002394 HPRD:01148 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 (amino acid transporter heavy chain), member 2 protein-coding 561_WT_peak_518 chr1 150584174 150584403 + 111 NA Intergenic Intergenic 17321 NM_207045 2029 Hs.632456 NM_004436 HPRD:11927 ENSA ARPP-19e endosulfine alpha protein-coding 561_WT_peak_4279 chr2 120934424 120934999 + 111 NA 3' UTR (NM_001184937, exon 24 of 24) 3' UTR (NM_001184937, exon 24 of 24) 46273 NM_024121 79134 Hs.376722 NM_024121 TMEM185B FAM11B transmembrane protein 185B protein-coding 561_WT_peak_4313 chr2 136499661 136499941 + 111 NA intron (NM_014607, intron 1 of 12) CpG 612 NM_014607 23190 Hs.591242 NM_014607 HPRD:18254 UBXN4 UBXD2|UBXDC1|erasin UBX domain protein 4 protein-coding 561_WT_peak_392 chr1 114355085 114355395 + 111 NA promoter-TSS (NM_018364) promoter-TSS (NM_018364) -170 NM_018364 54665 Hs.486285 NM_018364 HPRD:08561 RSBN1 ROSBIN round spermatid basic protein 1 protein-coding 561_WT_peak_6561 chr7 10025 10237 + 111 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -139587 NR_108065 100507642 Hs.557780 NR_108064 LOC100507642 - uncharacterized LOC100507642 ncRNA 561_WT_peak_1897 chr12 122110031 122110466 + 111 NA Intergenic AluJr|SINE|Alu -2688 NM_173855 283385 Hs.434154 NM_173855 HPRD:17330 MORN3 - MORN repeat containing 3 protein-coding 561_WT_peak_5975-2 chr5 145562709 145562730 + 111 NA promoter-TSS (NM_020117) promoter-TSS (NM_020117) -425 NM_020117 51520 Hs.432674 NM_020117 HPRD:01042 LARS HSPC192|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 561_WT_peak_1879 chr12 120639110 120639540 + 111 NA promoter-TSS (NM_001002) promoter-TSS (NM_001002) 231 NR_038924 100506649 Hs.569205 NR_038924 ENSG00000255857 PXN-AS1 EyeLinc4 PXN antisense RNA 1 ncRNA 561_WT_peak_3278 chr17 57864176 57864325 + 111 NA intron (NM_030938, intron 7 of 11) intron (NM_030938, intron 7 of 11) -54377 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 561_WT_peak_3097 chr17 27276336 27276562 + 111 NA intron (NM_001290131, intron 2 of 10) CpG 2059 NM_001033561 57649 Hs.444173 NM_020889 HPRD:15123 PHF12 PF1 PHD finger protein 12 protein-coding 561_WT_peak_3064 chr17 18684455 18684804 + 111 NA promoter-TSS (NM_016078) promoter-TSS (NM_016078) 47 NM_016078 51030 Hs.87295 NM_016078 HPRD:13293 TVP23B FAM18B|FAM18B1|NPD008|YDR084C trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) protein-coding 561_WT_peak_6552 chr6 167364728 167365075 + 111 NA intron (NM_003730, intron 2 of 8) LTR13|LTR|ERVK 5176 NM_003730 8635 Hs.529989 NM_003730 HPRD:10197 RNASET2 RNASE6PL|bA514O12.3 ribonuclease T2 protein-coding 561_WT_peak_2750 chr16 27378743 27379125 + 111 NA Intergenic Intergenic -34549 NM_181079 50615 Hs.210546 NM_021798 IL21R CD360|NILR interleukin 21 receptor protein-coding 561_WT_peak_2149 chr14 24701733 24702015 + 111 NA promoter-TSS (NM_006156) promoter-TSS (NM_006156) -204 NM_001002002 51292 Hs.368855 NM_016576 HPRD:13590 GMPR2 - guanosine monophosphate reductase 2 protein-coding 561_WT_peak_5640 chr4 174255174 174255538 + 111 NA promoter-TSS (NM_001130689) promoter-TSS (NM_001130689) 153 NM_001130688 3148 Hs.434953 NM_002129 HMGB2 HMG2 high mobility group box 2 protein-coding 561_WT_peak_3161 chr17 37969903 37970174 + 111 NA intron (NM_001257409, intron 2 of 5) intron (NM_001257409, intron 2 of 5) -35560 NM_001284516 22806 Hs.371680 NM_012481 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 (Aiolos) protein-coding 561_WT_peak_1174 chr11 175588 175913 + 111 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -17330 NM_001097610 653486 Hs.127059 NM_001097610 LOC653486 - secretoglobin, family 1C, member 1-like protein-coding 561_WT_peak_5117 chr3 51429169 51429447 + 111 NA exon (NM_013286, exon 1 of 1) exon (NM_013286, exon 1 of 1) 609 NM_013286 29890 Hs.118738 NM_013286 HPRD:11486 RBM15B HUMAGCGB|OTT3 RNA binding motif protein 15B protein-coding 561_WT_peak_3874 chr19 51014442 51014731 + 111 NA promoter-TSS (NM_001270641) promoter-TSS (NM_001270641) 26 NM_001270640 126119 Hs.467151 NM_138334 HPRD:15297 JOSD2 - Josephin domain containing 2 protein-coding 561_WT_peak_5975 chr5 145561830 145562510 + 111 NA 5' UTR (NM_020117, exon 1 of 32) 5' UTR (NM_020117, exon 1 of 32) 124 NM_020117 51520 Hs.432674 NM_020117 HPRD:01042 LARS HSPC192|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 561_WT_peak_397 chr1 115054094 115054350 + 111 NA promoter-TSS (NM_015906) promoter-TSS (NM_015906) -441 NM_033020 51592 Hs.26837 NM_015906 HPRD:10423 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 561_WT_peak_434 chr1 144908266 144908601 + 111 NA intron (NM_001002811, intron 13 of 18) intron (NM_001002811, intron 13 of 18) 23932 NM_001002811 9659 Hs.584841 NM_014644 HPRD:10482 PDE4DIP CMYA2|MMGL phosphodiesterase 4D interacting protein protein-coding 561_WT_peak_2879 chr16 68482576 68482788 + 111 NA promoter-TSS (NM_018667) promoter-TSS (NM_018667) -273 NM_018667 55512 Hs.368421 NM_018667 HPRD:16154 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) protein-coding 561_WT_peak_2325 chr14 90863283 90863629 + 111 NA 5' UTR (NM_006888, exon 1 of 6) 5' UTR (NM_006888, exon 1 of 6) 129 NM_006888 801 Hs.282410 NM_006888 HPRD:00241 CALM1 CALML2|CAMI|CPVT4|DD132|PHKD|caM calmodulin 1 (phosphorylase kinase, delta) protein-coding 561_WT_peak_7024 chr8 56686036 56686265 + 111 NA promoter-TSS (NM_001286661) promoter-TSS (NM_001286661) -184 NM_001286661 137695 Hs.420076 NM_152417 HPRD:08128 TMEM68 - transmembrane protein 68 protein-coding 561_WT_peak_3615 chr19 10305277 10305584 + 111 NA intron (NM_001379, intron 1 of 39) CpG 325 NM_001379 1786 Hs.202672 NM_001379 HPRD:00532 DNMT1 ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT DNA (cytosine-5-)-methyltransferase 1 protein-coding 561_WT_peak_831 chr1 245027867 245028186 + 111 NA promoter-TSS (NM_004501) promoter-TSS (NM_004501) -199 NM_031844 3192 Hs.106212 NM_004501 HPRD:04185 HNRNPU HNRPU|SAF-A|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) protein-coding 561_WT_peak_5277 chr3 141217727 141218026 + 110 NA intron (NM_006506, intron 1 of 23) intron (NM_006506, intron 1 of 23) 11950 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 561_WT_peak_2353 chr14 97925048 97925702 + 110 NA intron (NR_110166, intron 1 of 4) UCON31|Unknown|Unknown 222 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LOC101929241 - uncharacterized LOC101929241 ncRNA 561_WT_peak_4082 chr2 61192307 61192575 + 110 NA intron (NM_144709, intron 7 of 17) intron (NM_144709, intron 7 of 17) -52371 NM_002618 5194 Hs.161377 NM_002618 HPRD:03475 PEX13 NALD|PBD11A|PBD11B|ZWS peroxisomal biogenesis factor 13 protein-coding 561_WT_peak_4087 chr2 61698508 61698969 + 110 NA promoter-TSS (NM_014709) promoter-TSS (NM_014709) -889 NM_014709 9736 Hs.644708 NM_014709 HPRD:11665 USP34 - ubiquitin specific peptidase 34 protein-coding 561_WT_peak_3942 chr19 59087082 59087379 + 110 NA intron (NR_026052, intron 1 of 1) CpG 464 NR_026052 65996 Hs.541177 NM_023939 HPRD:14527 CENPBD1P1 - CENPBD1 pseudogene 1 pseudo 561_WT_peak_6596 chr7 12250980 12251344 + 110 NA intron (NM_001134232, intron 1 of 7) CpG 314 NM_018374 54664 Hs.396358 NM_018374 TMEM106B - transmembrane protein 106B protein-coding 561_WT_peak_775 chr1 228757119 228757376 + 110 NA Intergenic CpG -23147 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_553 chr1 155903936 155904133 + 110 NA intron (NM_014949, intron 1 of 13) intron (NM_014949, intron 1 of 13) 154 NM_014949 22889 Hs.24656 NM_014949 HPRD:17198 KIAA0907 BLOM7 KIAA0907 protein-coding 561_WT_peak_1264 chr11 44087470 44087997 + 110 NA promoter-TSS (NM_032592) promoter-TSS (NM_032592) 4 NM_001127219 84680 Hs.126706 NM_032592 HPRD:10524 ACCS ACS|PHACS 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) protein-coding 561_WT_peak_6393 chr6 90007719 90008040 + 110 NA intron (NM_002043, intron 2 of 8) intron (NM_002043, intron 2 of 8) 17139 NM_002043 2570 Hs.719891 NM_002043 HPRD:15922 GABRR2 - gamma-aminobutyric acid (GABA) A receptor, rho 2 protein-coding 561_WT_peak_7599 chrX 106871725 106872064 + 110 NA exon (NM_002764, exon 1 of 7) exon (NM_002764, exon 1 of 7) 240 NM_002764 5631 Hs.56 NM_002764 HPRD:02413 PRPS1 ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI phosphoribosyl pyrophosphate synthetase 1 protein-coding 561_WT_peak_1359 chr11 65268295 65268561 + 110 NA non-coding (NR_002819, exon 1 of 1) non-coding (NR_002819, exon 1 of 1) 3195 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 561_WT_peak_762 chr1 227953977 227954290 + 110 NA intron (NM_053052, intron 3 of 4) intron (NM_053052, intron 3 of 4) -31021 NM_001161465 65094 Hs.555974 NM_023007 HPRD:07774 JMJD4 - jumonji domain containing 4 protein-coding 561_WT_peak_7067 chr8 90996223 90996881 + 110 NA intron (NM_002485, intron 1 of 15) CpG 347 NM_002485 4683 Hs.492208 NM_002485 HPRD:04050 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding 561_WT_peak_3569 chr19 2289868 2290116 + 110 NA 3' UTR (NM_001101391, exon 2 of 2) 3' UTR (NM_001101391, exon 2 of 2) -7811 NM_198532 374872 Hs.511803 NM_198532 HPRD:12707 C19orf35 - chromosome 19 open reading frame 35 protein-coding 561_WT_peak_1840 chr12 108079220 108079439 + 110 NA promoter-TSS (NM_007062) promoter-TSS (NM_007062) -261 NM_007062 11137 Hs.506652 NM_007062 HPRD:11464 PWP1 IEF-SSP-9502 PWP1 homolog (S. cerevisiae) protein-coding 561_WT_peak_7059 chr8 80942251 80942523 + 110 NA exon (NM_014018, exon 1 of 3) exon (NM_014018, exon 1 of 3) 119 NM_014018 28957 Hs.521124 NM_014018 HPRD:10097 MRPS28 MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 561_WT_peak_6074 chr6 711167 711372 + 110 NA Intergenic CpG -18128 NM_018303 55770 Hs.484412 NM_018303 HPRD:11544 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 561_WT_peak_5066 chr3 40494270 40494729 + 110 NA intron (NR_040100, intron 1 of 3) CpG 300 NR_040100 285266 Hs.619663 NR_040100 ENSG00000223797 ENTPD3-AS1 - ENTPD3 antisense RNA 1 ncRNA 561_WT_peak_6898 chr7 150361043 150361275 + 110 NA Intergenic Intergenic -21635 NM_015660 26157 Hs.647071 NM_015660 HPRD:16279 GIMAP2 HIMAP2|IAN12|IMAP2 GTPase, IMAP family member 2 protein-coding 561_WT_peak_1202 chr11 9335952 9336297 + 109 NA non-coding (NR_028491, exon 1 of 8) non-coding (NR_028491, exon 1 of 8) 191 NM_015012 440026 Hs.594563 NM_015012 HPRD:18632 TMEM41B - transmembrane protein 41B protein-coding 561_WT_peak_6832 chr7 127032143 127032626 + 109 NA 5' UTR (NM_176814, exon 1 of 6) 5' UTR (NM_176814, exon 1 of 6) 383 NM_176814 168850 Hs.159006 NM_176814 HPRD:14112 ZNF800 - zinc finger protein 800 protein-coding 561_WT_peak_3102 chr17 28033435 28033760 + 109 NA intron (NM_001282130, intron 2 of 7) intron (NM_001282130, intron 2 of 7) 54853 NM_001282131 85464 Hs.654754 NM_033389 HPRD:09487 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 561_WT_peak_2544 chr15 72667976 72668791 + 109 NA promoter-TSS (NR_027262) promoter-TSS (NR_027262) -71 NR_027262 80072 Hs.591113 NM_025005 ENSG00000260339 HEXA-AS1 C15orf34 HEXA antisense RNA 1 ncRNA 561_WT_peak_4090 chr2 61991582 61991934 + 109 NA Intergenic CpG 89520 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161, member A protein-coding 561_WT_peak_6206 chr6 27559555 27559730 + 109 NA Intergenic tRNA-Lys-AAA|tRNA|tRNA -102172 NR_038293 100507173 Hs.635987 NR_038292 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 561_WT_peak_6831 chr7 121170349 121170891 + 109 NA Intergenic MLT1I|LTR|ERVL-MaLR -134198 NM_001040020 10447 Hs.434053 NM_014888 HPRD:12270 FAM3C ILEI family with sequence similarity 3, member C protein-coding 561_WT_peak_6658 chr7 44613302 44613561 + 109 NA intron (NM_019082, intron 1 of 13) CpG 706 NM_019082 54606 Hs.654762 NM_019082 HPRD:12154 DDX56 DDX21|DDX26|NOH61 DEAD (Asp-Glu-Ala-Asp) box helicase 56 protein-coding 561_WT_peak_4002 chr2 27886596 27886982 + 109 NA promoter-TSS (NM_001282731) promoter-TSS (NM_001282731) -82 NM_001282731 9913 Hs.6232 NM_014860 HPRD:18115 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H suppressor of Ty 7 (S. cerevisiae)-like protein-coding 561_WT_peak_3974 chr2 15731954 15732329 + 109 NA intron (NM_004939, intron 1 of 25) CpG 396 NM_004939 1653 Hs.440599 NM_004939 HPRD:03158 DDX1 DBP-RB|UKVH5d DEAD (Asp-Glu-Ala-Asp) box helicase 1 protein-coding 561_WT_peak_6619 chr7 25019308 25019739 + 109 NA 5' UTR (NM_015550, exon 1 of 23) 5' UTR (NM_015550, exon 1 of 23) 308 NM_015550 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 561_WT_peak_7164 chr8 134532896 134533081 + 109 NA intron (NM_173344, intron 2 of 9) L1ME4a|LINE|L1 51195 NM_173344 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 561_WT_peak_3096 chr17 27230171 27230368 + 109 NA promoter-TSS (NM_144683) promoter-TSS (NM_144683) -180 NM_144683 147015 Hs.631760 NM_144683 HPRD:14488 DHRS13 SDR7C5 dehydrogenase/reductase (SDR family) member 13 protein-coding 561_WT_peak_6762 chr7 99063727 99064136 + 109 NA promoter-TSS (NM_001198879) promoter-TSS (NM_001198879) -107 NM_001003714 9551 Hs.521056 NM_004889 HPRD:16520 ATP5J2 ATP5JL ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 protein-coding 561_WT_peak_110 chr1 25251577 25251902 + 109 NA intron (NM_004350, intron 2 of 4) intron (NM_004350, intron 2 of 4) 5031 NM_004350 864 Hs.170019 NM_004350 HPRD:02565 RUNX3 AML2|CBFA3|PEBP2aC runt-related transcription factor 3 protein-coding 561_WT_peak_2760 chr16 28985948 28986278 + 109 NA promoter-TSS (NM_001142448) promoter-TSS (NM_001142448) 17 NM_001142450 83985 Hs.617449 NM_032038 HPRD:11599 SPNS1 HSpin1|LAT|PP2030|SPIN1|SPINL|nrs spinster homolog 1 (Drosophila) protein-coding 561_WT_peak_1638 chr12 29256479 29256667 + 109 NA Intergenic L2c|LINE|L2 -45363 NM_001271783 55711 Hs.728955 NM_018099 HPRD:14723 FAR2 MLSTD1|SDR10E2 fatty acyl CoA reductase 2 protein-coding 561_WT_peak_7381 chr9 107753414 107754002 + 109 NA Intergenic Intergenic -63181 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 561_WT_peak_3733 chr19 36390553 36390625 + 109 NA intron (NM_139239, intron 1 of 11) intron (NM_139239, intron 1 of 11) 963 NM_139239 84807 Hs.466531 NM_139239 HPRD:18140 NFKBID IkappaBNS|TA-NFKBH nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta protein-coding 561_WT_peak_1280 chr11 47869518 47869879 + 109 NA intron (NM_015231, intron 1 of 35) intron (NM_015231, intron 1 of 35) 359 NM_015231 23279 Hs.744107 NM_015231 HPRD:16254 NUP160 - nucleoporin 160kDa protein-coding 561_WT_peak_931 chr10 30315944 30316459 + 109 NA exon (NM_020848, exon 3 of 4) exon (NM_020848, exon 3 of 4) 32287 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 561_WT_peak_2674 chr16 3355496 3355965 + 109 NA promoter-TSS (NM_033208) promoter-TSS (NM_033208) -291 NM_033208 91151 Hs.161287 NM_033208 HPRD:11632 TIGD7 Sancho tigger transposable element derived 7 protein-coding 561_WT_peak_5869 chr5 107718095 107718343 + 109 NA promoter-TSS (NM_001163315) promoter-TSS (NM_001163315) -420 NM_001163315 64839 Hs.657225 NM_022824 HPRD:10950 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine-rich repeat protein 17 protein-coding 561_WT_peak_2480 chr15 51057619 51057918 + 109 NA 5' UTR (NM_032802, exon 1 of 15) 5' UTR (NM_032802, exon 1 of 15) 142 NM_032802 84888 Hs.401537 NM_032802 HPRD:09742 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 561_WT_peak_7060 chr8 81260221 81260450 + 109 NA Intergenic Intergenic 106711 NR_049894 100847056 NR_049894 miRBase:MI0019316 MIR5708 - microRNA 5708 ncRNA 561_WT_peak_6765 chr7 99155784 99156255 + 109 NA promoter-TSS (NM_024061) promoter-TSS (NM_024061) -26 NM_001085366 79027 Hs.599798 NM_024061 HPRD:11673 ZNF655 VIK|VIK-1 zinc finger protein 655 protein-coding 561_WT_peak_3527 chr18 67872789 67873297 + 109 NA promoter-TSS (NM_173630) promoter-TSS (NM_173630) -81 NM_173630 25914 Hs.654809 NM_173630 HPRD:11525 RTTN - rotatin protein-coding 561_WT_peak_1547 chr12 1799844 1800046 + 109 NA promoter-TSS (NM_024551) promoter-TSS (NM_024551) -302 NM_024551 79602 Hs.371642 NM_024551 HPRD:06403 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 561_WT_peak_1540 chr12 498173 498550 + 109 NA promoter-TSS (NM_001130148) promoter-TSS (NM_001130148) -155 NM_001130147 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 561_WT_peak_6704 chr7 72395518 72395988 + 109 NA intron (NM_001257190, intron 4 of 15) CpG 29549 NR_033323 260294 Hs.510927 NM_148936 HPRD:15657 NSUN5P2 NOL1R2|NSUN5C|WBSCR20B|WBSCR20C NOP2/Sun domain family, member 5 pseudogene 2 pseudo 561_WT_peak_3182 chr17 40540715 40541115 + 109 NA promoter-TSS (NM_003150) promoter-TSS (NM_003150) -402 NM_139276 6774 Hs.463059 NM_003150 HPRD:00026 STAT3 APRF|HIES signal transducer and activator of transcription 3 (acute-phase response factor) protein-coding 561_WT_peak_7527 chrX 44732530 44733089 + 109 NA exon (NM_001291415, exon 1 of 30) exon (NM_001291415, exon 1 of 30) 388 NM_021140 7403 Hs.522616 NM_021140 HPRD:02131 KDM6A KABUK2|UTX|bA386N14.2 lysine (K)-specific demethylase 6A protein-coding 561_WT_peak_3826 chr19 48248762 48249019 + 109 NA promoter-TSS (NM_015710) promoter-TSS (NM_015710) 97 NM_015710 29997 Hs.421907 NM_015710 HPRD:16142 GLTSCR2 PICT-1|PICT1 glioma tumor suppressor candidate region gene 2 protein-coding 561_WT_peak_3786 chr19 44123139 44123836 + 109 NA intron (NM_182498, intron 1 of 2) CpG 527 NM_182498 126299 Hs.99093 NM_182498 HPRD:14671 ZNF428 C19orf37|Zfp428 zinc finger protein 428 protein-coding 561_WT_peak_3086 chr17 26605326 26605612 + 109 NA intron (NR_028334, intron 2 of 2) L1M5|LINE|L1 28939 NR_028334 284085 Hs.371796 NM_173624 HPRD:08284 KRT18P55 - keratin 18 pseudogene 55 pseudo 561_WT_peak_721 chr1 211555900 211556564 + 109 NA non-coding (NR_026761, exon 1 of 6) non-coding (NR_026761, exon 1 of 6) 135 NR_026761 84791 Hs.523932 NM_032705 HPRD:17500 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 561_WT_peak_2547 chr15 72978500 72978788 + 109 NA promoter-TSS (NR_002780) promoter-TSS (NR_002780) 124 NR_045566 585 Hs.208681 NM_033028 HPRD:08982 BBS4 - Bardet-Biedl syndrome 4 protein-coding 561_WT_peak_1891 chr12 121647809 121648154 + 109 NA exon (NM_001256796, exon 1 of 13) exon (NM_001256796, exon 1 of 13) 317 NM_002560 5025 Hs.321709 NM_002560 HPRD:09017 P2RX4 P2X4|P2X4R purinergic receptor P2X, ligand-gated ion channel, 4 protein-coding 561_WT_peak_462 chr1 147735813 147736115 + 109 NA intron (NR_102404, intron 17 of 18).2 intron (NR_102404, intron 17 of 18).2 -16622 NR_120331 101927468 Hs.515867 NR_120331 LOC101927468 - uncharacterized LOC101927468 ncRNA 561_WT_peak_3444 chr18 13674868 13675024 + 109 NA intron (NM_001098801, intron 3 of 4) intron (NM_001098801, intron 3 of 4) 33189 NM_001276251 753 Hs.731853 NM_004338 HPRD:07358 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 561_WT_peak_838 chr1 249239893 249240090 + 109 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat 39549 NM_170725 267002 Hs.602037 NM_170725 PGBD2 - piggyBac transposable element derived 2 protein-coding 561_WT_peak_3327 chr17 66508596 66508906 + 109 NA intron (NM_212472, intron 1 of 10) CpG 231 NM_212472 5573 Hs.280342 NM_002734 HPRD:01786 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase, cAMP-dependent, regulatory, type I, alpha protein-coding 561_WT_peak_1925 chr12 132195422 132195803 + 109 NA promoter-TSS (NM_001261411) promoter-TSS (NM_001261411) -20 NM_004592 6433 Hs.308171 NM_004592 HPRD:09055 SFSWAP SFRS8|SWAP splicing factor, suppressor of white-apricot family protein-coding 561_WT_peak_5242 chr3 127770809 127771169 + 109 NA promoter-TSS (NM_013336) promoter-TSS (NM_013336) -223 NM_013336 29927 Hs.518236 NM_013336 HPRD:15316 SEC61A1 HSEC61|SEC61|SEC61A Sec61 alpha 1 subunit (S. cerevisiae) protein-coding 561_WT_peak_1743 chr12 58176389 58176672 + 109 NA promoter-TSS (NM_001172697) promoter-TSS (NM_001172697) 2 NM_001172697 10102 Hs.632704 NM_005726 HPRD:05285 TSFM EFTS|EFTSMT Ts translation elongation factor, mitochondrial protein-coding 561_WT_peak_5304 chr3 160117317 160117709 + 108 NA promoter-TSS (NM_020800) promoter-TSS (NM_020800) -193 NM_001190241 57560 Hs.478095 NM_020800 HPRD:13853 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 561_WT_peak_2986 chr17 3749327 3749740 + 108 NA promoter-TSS (NM_001114118) promoter-TSS (NM_001114118) 12 NM_001114118 55421 Hs.120963 NM_018553 C17orf85 ELG|HSA277841 chromosome 17 open reading frame 85 protein-coding 561_WT_peak_5152 chr3 71275946 71276235 + 108 NA intron (NM_001012505, intron 5 of 6) intron (NM_001012505, intron 5 of 6) 18226 NM_001244814 27086 Hs.59368 NM_032682 HPRD:18518 FOXP1 12CC4|QRF1|hFKH1B forkhead box P1 protein-coding 561_WT_peak_4125 chr2 70056732 70057293 + 108 NA 5' UTR (NM_178439, exon 1 of 14) 5' UTR (NM_178439, exon 1 of 14) 194 NM_178439 64395 Hs.293971 NM_178439 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less, spermatogenesis associated 1 protein-coding 561_WT_peak_3434 chr18 11850902 11851266 + 108 NA promoter-TSS (NM_020412) promoter-TSS (NM_020412) -305 NM_020412 57132 Hs.656244 NM_020412 HPRD:12106 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 561_WT_peak_3665 chr19 15947524 15947796 + 108 NA TTS (NR_015379) TTS (NR_015379) 7903 NR_015379 652995 Hs.644234 NR_015379 ENSG00000214049 UCA1 CUDR|LINC00178|NCRNA00178|UCAT1 urothelial cancer associated 1 (non-protein coding) ncRNA 561_WT_peak_16 chr1 1510293 1510598 + 108 NA promoter-TSS (NM_014188) promoter-TSS (NM_014188) -183 NM_014188 29101 Hs.30026 NM_014188 HPRD:13712 SSU72 HSPC182|PNAS-120 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) protein-coding 561_WT_peak_7551 chrX 52987641 52988001 + 108 NA promoter-TSS (NM_001242491).2 promoter-TSS (NM_001242491).2 -106 NM_001242491 29057 Hs.6451 NM_014138 HPRD:06683 FAM156A PRO0659|TMEM29 family with sequence similarity 156, member A protein-coding 561_WT_peak_7583 chrX 77041429 77041671 + 108 NA 5' UTR (NM_000489, exon 1 of 35) 5' UTR (NM_000489, exon 1 of 35) 205 NM_138270 546 Hs.533526 NM_000489 HPRD:02069 ATRX ATR2|JMS|MRXHF1|RAD54|RAD54L|SFM1|SHS|XH2|XNP|ZNF-HX alpha thalassemia/mental retardation syndrome X-linked protein-coding 561_WT_peak_1289 chr11 57092455 57092883 + 108 NA promoter-TSS (NM_033396) promoter-TSS (NM_033396) -256 NM_033396 85456 Hs.530730 NM_033396 HPRD:06164 TNKS1BP1 TAB182 tankyrase 1 binding protein 1, 182kDa protein-coding 561_WT_peak_7455 chr9 132565126 132565353 + 108 NA promoter-TSS (NM_014506) promoter-TSS (NM_014506) -193 NM_014506 27348 Hs.252682 NM_014506 HPRD:16270 TOR1B DQ1 torsin family 1, member B (torsin B) protein-coding 561_WT_peak_2504 chr15 60770789 60771656 + 108 NA promoter-TSS (NR_120339) promoter-TSS (NR_120339) 137 NM_001276385 79664 Hs.200943 NM_024611 HPRD:17628 ICE2 BRCC1|NARG2 interactor of little elongator complex ELL subunit 2 protein-coding 561_WT_peak_5624 chr4 154036967 154037351 + 108 NA Intergenic Intergenic -37111 NM_001130067 23321 Hs.435711 NM_015271 HPRD:10279 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 561_WT_peak_3405 chr18 10028 10283 + 108 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -1920 NR_110795 102723376 Hs.606852 NR_110795 LOC102723376 - uncharacterized LOC102723376 ncRNA 561_WT_peak_1204 chr11 9481735 9482321 + 108 NA promoter-TSS (NM_003442) promoter-TSS (NM_003442) 217 NR_036539 644656 Hs.597846 NR_036539 LOC644656 - uncharacterized LOC644656 ncRNA 561_WT_peak_1340 chr11 64863483 64864133 + 108 NA exon (NM_013265, exon 1 of 10) exon (NM_013265, exon 1 of 10) 221 NM_013265 738 Hs.277517 NM_013265 HPRD:12605 VPS51 ANG2|ANG3|C11orf2|C11orf3|FFR vacuolar protein sorting 51 homolog (S. cerevisiae) protein-coding 561_WT_peak_3164 chr17 38136980 38137337 + 108 NA 5' UTR (NM_002809, exon 1 of 12) 5' UTR (NM_002809, exon 1 of 12) 137 NM_002809 5709 Hs.12970 NM_002809 HPRD:10170 PSMD3 P58|RPN3|S3|TSTA2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 protein-coding 561_WT_peak_2158 chr14 31091265 31091665 + 108 NA promoter-TSS (NM_016106) promoter-TSS (NM_016106) 5 NM_001283032 23256 Hs.369168 NM_016106 HPRD:10210 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 561_WT_peak_4678 chr20 49002652 49002976 + 108 NA Intergenic Intergenic -64935 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 561_WT_peak_239 chr1 53067930 53068209 + 108 NA promoter-TSS (NM_015696) promoter-TSS (NM_015696) 26 NM_015696 2882 Hs.43728 NM_015696 HPRD:13606 GPX7 CL683|GPX6|GPx-7|GSHPx-7|NPGPx glutathione peroxidase 7 protein-coding 561_WT_peak_2836 chr16 48278049 48278683 + 108 NA exon (NM_031490, exon 1 of 15) exon (NM_031490, exon 1 of 15) 288 NM_001300948 83752 Hs.295923 NM_031490 LONP2 LONP|LONPL lon peptidase 2, peroxisomal protein-coding 561_WT_peak_167 chr1 33815724 33816202 + 108 NA promoter-TSS (NM_004427) promoter-TSS (NM_004427) -464 NM_004427 1912 Hs.524271 NM_004427 HPRD:10340 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 (Drosophila) protein-coding 561_WT_peak_1811 chr12 95611984 95612299 + 108 NA promoter-TSS (NM_018351) promoter-TSS (NM_018351) 619 NM_017599 55591 Hs.24135 NM_017599 HPRD:11671 VEZT VEZATIN vezatin, adherens junctions transmembrane protein protein-coding 561_WT_peak_4721 chr20 62152139 62152444 + 108 NA intron (NM_024299, intron 1 of 3) CpG-17002 158 NM_024299 79144 Hs.79625 NM_024299 HPRD:12750 PPDPF C20orf149|dJ697K14.9|exdpf pancreatic progenitor cell differentiation and proliferation factor protein-coding 561_WT_peak_4801 chr21 40685358 40685395 + 108 NA promoter-TSS (NR_111942) promoter-TSS (NR_111942) 336 NM_001007246 54014 Hs.627139 NM_018963 HPRD:11683 BRWD1 C21orf107|N143|WDR9 bromodomain and WD repeat domain containing 1 protein-coding 561_WT_peak_3939 chr19 59070573 59070786 + 108 NA promoter-TSS (NM_003969) promoter-TSS (NM_003969) 126 NR_027334 100131691 Hs.743767 NR_027334 ENSG00000267858 LOC100131691 - uncharacterized LOC100131691 ncRNA 561_WT_peak_7427 chr9 129233341 129233681 + 108 NA intron (NM_033446, intron 7 of 9) MIRb|SINE|MIR -60728 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-protein coding RNA, repressor of NFAT ncRNA 561_WT_peak_2896 chr16 70834800 70835072 + 108 NA 5' UTR (NM_018052, exon 1 of 19) 5' UTR (NM_018052, exon 1 of 19) 125 NM_018052 55697 Hs.445061 NM_018052 HPRD:07660 VAC14 ArPIKfyve|TAX1BP2|TRX Vac14 homolog (S. cerevisiae) protein-coding 561_WT_peak_1318 chr11 62379796 62380232 + 108 NA promoter-TSS (NM_000327) promoter-TSS (NM_000327) -199 NM_000327 6094 Hs.281564 NM_000327 HPRD:01616 ROM1 ROM|ROSP1|RP7|TSPAN23 retinal outer segment membrane protein 1 protein-coding 561_WT_peak_1815 chr12 96793958 96794235 + 108 NA 5' UTR (NM_001170464, exon 1 of 16) 5' UTR (NM_001170464, exon 1 of 16) 270 NM_002595 5128 Hs.506415 NM_002595 HPRD:09141 CDK17 PCTAIRE2|PCTK2 cyclin-dependent kinase 17 protein-coding 561_WT_peak_5429 chr4 25235286 25235519 + 108 NA promoter-TSS (NM_018323) promoter-TSS (NM_018323) -251 NM_018323 55300 Hs.191701 NM_018323 HPRD:15132 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 561_WT_peak_7568 chrX 69353369 69353555 + 108 NA intron (NM_001551, intron 1 of 6) CpG 144 NM_001551 3476 Hs.496267 NM_001551 HPRD:02140 IGBP1 ALPHA-4|IBP1 immunoglobulin (CD79A) binding protein 1 protein-coding 561_WT_peak_4490 chr2 232347635 232348002 + 108 NA Intergenic MER45A|DNA|hAT-Tip100 -18613 NM_005381 4691 Hs.79110 NM_005381 NCL C23 nucleolin protein-coding 561_WT_peak_4269 chr2 114360727 114360918 + 108 NA intron (NR_024004, intron 1 of 2) (CCCTAA)n|Simple_repeat|Simple_repeat 472 NR_024004 84771 Hs.712940 NR_024004 ENSG00000236397 DDX11L2 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2 pseudo 561_WT_peak_2659 chr16 2524158 2524356 + 108 NA promoter-TSS (NM_001199107) promoter-TSS (NM_001199107) -890 NM_001199107 57465 Hs.353087 NM_020705 ENSG00000162065 TBC1D24 DFNA65|DFNB86|DOORS|EIEE16|FIME|TLDC6 TBC1 domain family, member 24 protein-coding 561_WT_peak_1926 chr12 132413754 132413934 + 108 NA promoter-TSS (NM_025215) promoter-TSS (NM_025215) 31 NM_025215 80324 Hs.592004 NM_025215 HPRD:10481 PUS1 MLASA1 pseudouridylate synthase 1 protein-coding 561_WT_peak_4148 chr2 74425613 74426334 + 108 NA intron (NM_006636, intron 1 of 7) CpG 283 NM_006636 10797 Hs.469030 NM_006636 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 561_WT_peak_3829 chr19 48833327 48833551 + 108 NA intron (NM_001425, intron 4 of 4) CpG 4810 NM_001425 2014 Hs.9999 NM_001425 HPRD:18514 EMP3 YMP epithelial membrane protein 3 protein-coding 561_WT_peak_5649 chr4 185683345 185683590 + 108 NA intron (NM_001286711, intron 16 of 19) intron (NM_001286711, intron 16 of 19) -28181 NM_024629 79682 Hs.575032 NM_024629 HPRD:14722 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 561_WT_peak_5610 chr4 146101335 146101722 + 108 NA promoter-TSS (NM_001102653) promoter-TSS (NM_001102653) -696 NM_001102653 54726 Hs.270851 NM_017493 HPRD:11033 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 561_WT_peak_237 chr1 52831539 52831924 + 108 NA intron (NM_032449, intron 1 of 23) CpG 146 NM_032449 200014 Hs.591451 NM_032449 HPRD:12393 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 561_WT_peak_554 chr1 155904415 155904622 + 108 NA promoter-TSS (NM_014949) promoter-TSS (NM_014949) -330 NM_014949 22889 Hs.24656 NM_014949 HPRD:17198 KIAA0907 BLOM7 KIAA0907 protein-coding 561_WT_peak_2563 chr15 77197805 77198125 + 108 NA Intergenic Intergenic -21748 NM_020843 49855 Hs.458986 NM_020843 HPRD:11704 SCAPER ZNF291|Zfp291 S-phase cyclin A-associated protein in the ER protein-coding 561_WT_peak_4340 chr2 158269785 158270138 + 108 NA Intergenic Intergenic 30643 NM_004288 9595 Hs.270 NM_004288 HPRD:09192 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 561_WT_peak_7594 chrX 101186641 101186926 + 108 NA 5' UTR (NM_001282401, exon 1 of 9) 5' UTR (NM_001282401, exon 1 of 9) 256 NM_001011657 84460 Hs.496512 NM_001011657 HPRD:10029 ZMAT1 - zinc finger, matrin-type 1 protein-coding 561_WT_peak_6165 chr6 26285034 26285315 + 108 NA TTS (NM_003543) TTS (NM_003543) 553 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 561_WT_peak_4147 chr2 74405499 74405960 + 108 NA intron (NM_018221, intron 1 of 5) CpG 266 NM_018221 55233 Hs.602092 NM_018221 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 561_WT_peak_720 chr1 211432197 211432622 + 108 NA promoter-TSS (NM_001136223) promoter-TSS (NM_001136223) -299 NM_001136224 55758 Hs.356399 NM_018254 HPRD:08338 RCOR3 - REST corepressor 3 protein-coding 561_WT_peak_1430 chr11 82671140 82671384 + 108 NA Intergenic L1ME3B|LINE|L1 58525 NM_145018 220042 Hs.165607 NM_145018 HPRD:08062 DDIAS C11orf82|noxin DNA damage-induced apoptosis suppressor protein-coding 561_WT_peak_7156 chr8 131257254 131257537 + 108 NA intron (NM_018482, intron 3 of 29) L3|LINE|CR1 51384 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 561_WT_peak_6068 chr6 148450 148852 + 108 NA promoter-TSS (NR_109817).2 promoter-TSS (NR_109817).2 -492 NR_109817 441123 NR_109817 ENSG00000170590 LINC00266-3 C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2 long intergenic non-protein coding RNA 266-3 ncRNA 561_WT_peak_7639 chrY 2342597 2342862 + 108 NA intron (NM_145177, intron 1 of 6).2 intron (NM_145177, intron 1 of 6).2 25851 NM_001171135 9189 Hs.131452 NM_004729 HPRD:02170 ZBED1 ALTE|DREF|TRAMP|hDREF zinc finger, BED-type containing 1 protein-coding 561_WT_peak_1799 chr12 93323252 93323495 + 108 NA promoter-TSS (NM_003566) promoter-TSS (NM_003566) -266 NM_003566 8411 Hs.567367 NM_003566 HPRD:05460 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 561_WT_peak_4801-2 chr21 40685449 40686168 + 108 NA promoter-TSS (NM_018963) promoter-TSS (NM_018963) -25 NR_111942 103091865 Hs.190548 NR_111942 BRWD1-IT2 - BRWD1 intronic transcript 2 (non-protein coding) ncRNA 561_WT_peak_5940 chr5 137800067 137800609 + 107 NA promoter-TSS (NM_001964) promoter-TSS (NM_001964) -843 NM_001964 1958 Hs.326035 NM_001964 HPRD:00549 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 561_WT_peak_1679 chr12 49110761 49111140 + 107 NA promoter-TSS (NM_001277842) promoter-TSS (NM_001277842) -169 NM_001277842 904 Hs.92308 NM_001240 HPRD:03938 CCNT1 CCNT|CYCT1|HIVE1 cyclin T1 protein-coding 561_WT_peak_982 chr10 45496655 45496924 + 107 NA promoter-TSS (NM_001039380) promoter-TSS (NM_001039380) -319 NM_001039380 220979 Hs.707791 NM_001039380 ENSG00000165511 C10orf25 - chromosome 10 open reading frame 25 protein-coding 561_WT_peak_2930 chr16 83841475 83841671 + 107 NA promoter-TSS (NM_001537) promoter-TSS (NM_001537) 65 NM_001537 3281 Hs.250899 NM_001537 HPRD:05185 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 561_WT_peak_834 chr1 249120566 249120977 + 107 NA promoter-TSS (NM_030645) promoter-TSS (NM_030645) 195 NR_036070 100422879 NR_036070 miRBase:MI0014140 MIR3124 - microRNA 3124 ncRNA 561_WT_peak_6253 chr6 29909963 29910102 + 107 NA promoter-TSS (NM_001242758) promoter-TSS (NM_001242758) -215 NM_001242758 3105 Hs.181244 NM_002116 HPRD:00826 HLA-A HLAA major histocompatibility complex, class I, A protein-coding 561_WT_peak_5759 chr5 55452741 55452932 + 107 NA intron (NM_024669, intron 6 of 11) LTR5_Hs|LTR|ERVK 76350 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 561_WT_peak_3288 chr17 60004759 60005310 + 107 NA non-coding (NR_026641, exon 1 of 25) non-coding (NR_026641, exon 1 of 25) 343 NR_026641 57508 Hs.279646 NM_020748 HPRD:11137 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 561_WT_peak_1169-2 chr10 132100017 132100224 + 107 NA Intergenic Intergenic 165481 NM_001199868 10539 Hs.42644 NM_006541 HPRD:10153 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 561_WT_peak_1911 chr12 123849127 123849348 + 107 NA TTS (NR_107039) TTS (NR_107039) 153 NR_107039 102466877 NR_107039 MIR8072 hsa-mir-8072 microRNA 8072 ncRNA 561_WT_peak_1226 chr11 18034848 18035107 + 107 NA promoter-TSS (NM_012139) promoter-TSS (NM_012139) -268 NR_104040 26297 Hs.32470 NM_012139 HPRD:06926 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 561_WT_peak_432 chr1 144536186 144536427 + 107 NA intron (NM_001278267, intron 52 of 130) intron (NM_001278267, intron 52 of 130) 76413 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 561_WT_peak_3009 chr17 7142924 7143151 + 107 NA promoter-TSS (NM_001284517) promoter-TSS (NM_001284517) -212 NM_024297 79142 Hs.644724 NM_024297 ENSG00000040633 PHF23 hJUNE-1b PHD finger protein 23 protein-coding 561_WT_peak_3201 chr17 42580862 42581170 + 107 NA promoter-TSS (NR_036474) promoter-TSS (NR_036474) -59 NR_036474 23131 Hs.463129 NM_001002909 GPATCH8 GPATC8|KIAA0553 G patch domain containing 8 protein-coding 561_WT_peak_4926 chr22 40357468 40357797 + 107 NA intron (NM_001291828, intron 2 of 4) intron (NM_001291828, intron 2 of 4) 14811 NM_001291825 9402 Hs.517499 NM_004810 HPRD:05156 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2-related adaptor protein 2 protein-coding 561_WT_peak_514 chr1 150459965 150460152 + 107 NA intron (NR_073513, intron 1 of 13) intron (NR_073513, intron 1 of 13) 218 NR_073514 80222 Hs.288974 NM_025150 HPRD:18148 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 561_WT_peak_408 chr1 117312331 117312593 + 107 NA TTS (NM_001767) TTS (NM_001767) 15376 NM_001767 914 Hs.523500 NM_001767 HPRD:01750 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 561_WT_peak_1335 chr11 64646318 64646527 + 107 NA promoter-TSS (NM_006795) promoter-TSS (NM_006795) -182 NM_006795 10938 Hs.523774 NM_006795 HPRD:09325 EHD1 H-PAST|HPAST1|PAST|PAST1 EH-domain containing 1 protein-coding 561_WT_peak_3991 chr2 26257051 26257437 + 107 NA 5' UTR (NM_016131, exon 1 of 6) 5' UTR (NM_016131, exon 1 of 6) 515 NM_016131 10890 Hs.467960 NM_016131 HPRD:06692 RAB10 - RAB10, member RAS oncogene family protein-coding 561_WT_peak_5941 chr5 137801286 137801598 + 107 NA 5' UTR (NM_001964, exon 1 of 2) 5' UTR (NM_001964, exon 1 of 2) 261 NM_001964 1958 Hs.326035 NM_001964 HPRD:00549 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 561_WT_peak_1169 chr10 132099596 132099896 + 107 NA Intergenic Intergenic 165107 NM_001199868 10539 Hs.42644 NM_006541 HPRD:10153 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 561_WT_peak_2731 chr16 22203523 22203644 + 107 NA Intergenic MIRc|SINE|MIR -14009 NM_013302 29904 Hs.498892 NM_013302 EEF2K HSU93850|eEF-2K eukaryotic elongation factor-2 kinase protein-coding 561_WT_peak_1882 chr12 120884147 120884401 + 107 NA promoter-TSS (NM_176818) promoter-TSS (NM_176818) 33 NM_176818 283459 Hs.706889 NM_176818 GATC 15E1.2 glutamyl-tRNA(Gln) amidotransferase, subunit C protein-coding 561_WT_peak_4799 chr21 40139473 40139662 + 106 NA intron (NR_027065, intron 1 of 6) intron (NR_027065, intron 1 of 6) 1331 NR_027066 400866 Hs.278704 NM_001001789 HPRD:10744 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 561_WT_peak_6919 chr7 157283383 157283597 + 106 NA intron (NR_110157, intron 2 of 3) L1MB7|LINE|L1 24565 NR_110157 101927914 Hs.623826 NR_110157 LOC101927914 - uncharacterized LOC101927914 ncRNA 561_WT_peak_6223 chr6 27805397 27806087 + 106 NA promoter-TSS (NM_003520) promoter-TSS (NM_003520) 375 NM_003510 8330 Hs.734717 NM_003510 HPRD:09100 HIST1H2AK H2A/d|H2AFD histone cluster 1, H2ak protein-coding 561_WT_peak_5775 chr5 64920413 64920873 + 106 NA promoter-TSS (NM_001093756) promoter-TSS (NM_001093756) 85 NR_003545 80006 Hs.591760 NM_024941 HPRD:07832 TRAPPC13 C5orf44 trafficking protein particle complex 13 protein-coding 561_WT_peak_6594 chr7 11013469 11013862 + 106 NA non-coding (NR_033436, exon 1 of 17) non-coding (NR_033436, exon 1 of 17) 166 NR_033435 9678 Hs.655688 NM_014660 HPRD:17845 PHF14 - PHD finger protein 14 protein-coding 561_WT_peak_380 chr1 111991900 111992317 + 106 NA promoter-TSS (NM_024102) promoter-TSS (NM_024102) -278 NM_024102 79084 Hs.204773 NM_024102 HPRD:14387 WDR77 MEP-50|MEP50|Nbla10071|p44|p44/Mep50 WD repeat domain 77 protein-coding 561_WT_peak_3357 chr17 74722457 74723331 + 106 NA promoter-TSS (NM_001206987) promoter-TSS (NM_001206987) -13 NM_001081461 23210 Hs.514505 NM_015167 HPRD:05371 JMJD6 PSR|PTDSR|PTDSR1 jumonji domain containing 6 protein-coding 561_WT_peak_1085 chr10 89621968 89622362 + 106 NA exon (NM_001126049, exon 1 of 1) exon (NM_001126049, exon 1 of 1) 1029 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53-regulated DNA replication inhibitor protein-coding 561_WT_peak_4034 chr2 39664588 39664824 + 106 NA promoter-TSS (NM_003618) promoter-TSS (NM_003618) 149 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 LOC728730 - uncharacterized LOC728730 ncRNA 561_WT_peak_3946 chr2 3381678 3381981 + 106 NA promoter-TSS (NM_003310) promoter-TSS (NM_003310) -176 NM_003310 7260 Hs.502770 NM_003310 HPRD:10287 TSSC1 - tumor suppressing subtransferable candidate 1 protein-coding 561_WT_peak_1979 chr13 31191617 31192118 + 106 NA promoter-TSS (NM_005800) promoter-TSS (NM_005800) 37 NM_005800 10208 Hs.533831 NM_005800 HPRD:09833 USPL1 C13orf22|D13S106E|bA121O19.1 ubiquitin specific peptidase like 1 protein-coding 561_WT_peak_4350 chr2 162165014 162165325 + 106 NA intron (NM_005805, intron 1 of 11) CpG 383 NM_005805 10213 Hs.740477 NM_005805 HPRD:06208 PSMD14 PAD1|POH1|RPN11 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 protein-coding 561_WT_peak_2375 chr14 102431540 102431776 + 106 NA intron (NM_001376, intron 1 of 77) CpG 793 NM_001376 1778 Hs.614080 NM_001376 HPRD:02524 DYNC1H1 DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein, cytoplasmic 1, heavy chain 1 protein-coding 561_WT_peak_5422 chr4 15757928 15758230 + 106 NA Intergenic Intergenic -21852 NM_001775 952 Hs.479214 NM_001775 CD38 ADPRC 1|T10 CD38 molecule protein-coding 561_WT_peak_3868 chr19 50836750 50837059 + 106 NA promoter-TSS (NR_110912) promoter-TSS (NR_110912) -132 NR_110912 3748 Hs.467146 NM_004977 HPRD:08886 KCNC3 KSHIIID|KV3.3|SCA13 potassium voltage-gated channel, Shaw-related subfamily, member 3 protein-coding 561_WT_peak_4440 chr2 202122965 202123416 + 106 NA intron (NR_111983, intron 1 of 8) intron (NR_111983, intron 1 of 8) 436 NR_111983 841 Hs.599762 NM_001228 HPRD:03459 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8, apoptosis-related cysteine peptidase protein-coding 561_WT_peak_2779 chr16 30482209 30482488 + 106 NA Intergenic L1MB7|LINE|L1 -1635 NM_002209 3683 Hs.174103 NM_002209 HPRD:01079 ITGAL CD11A|LFA-1|LFA1A integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) protein-coding 561_WT_peak_2574 chr15 81589149 81589353 + 105 NA promoter-TSS (NM_004513) promoter-TSS (NM_004513) -3 NM_004513 3603 Hs.459095 NM_004513 HPRD:04329 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 561_WT_peak_4990 chr3 5018955 5019242 + 105 NA Intergenic Intergenic -1999 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 561_WT_peak_1702 chr12 51762850 51763040 + 105 NA intron (NM_007210, intron 4 of 11) intron (NM_007210, intron 4 of 11) -22156 NM_001267615 9498 Hs.4749 NM_004858 HPRD:05430 SLC4A8 NBC3|NDCBE solute carrier family 4, sodium bicarbonate cotransporter, member 8 protein-coding 561_WT_peak_1945 chr13 21476702 21477016 + 105 NA promoter-TSS (NM_022459) promoter-TSS (NM_022459) 54 NM_022459 64328 Hs.507452 NM_022459 HPRD:18307 XPO4 exp4 exportin 4 protein-coding 561_WT_peak_4641 chr20 42578869 42579067 + 105 NA intron (NM_001098798, intron 1 of 7) intron (NM_001098798, intron 1 of 7) 4432 NM_001098798 84969 Hs.26608 NM_032883 HPRD:12734 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 561_WT_peak_6708 chr7 72936411 72936614 + 105 NA 5' UTR (NM_032408, exon 1 of 20) 5' UTR (NM_032408, exon 1 of 20) 103 NM_032408 9031 Hs.743372 NM_023005 HPRD:10416 BAZ1B WBSCR10|WBSCR9|WSTF bromodomain adjacent to zinc finger domain, 1B protein-coding 561_WT_peak_5451 chr4 39460314 39460871 + 105 NA promoter-TSS (NM_194451) promoter-TSS (NM_194451) -24 NM_000661 6133 Hs.412370 NM_000661 HPRD:04732 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 561_WT_peak_6992 chr8 41997544 41997810 + 105 NA Intergenic CpG -12787 NM_001134296 10947 Hs.654529 NM_006803 HPRD:09801 AP3M2 AP47B|CLA20|P47B adaptor-related protein complex 3, mu 2 subunit protein-coding 561_WT_peak_4679 chr20 49126919 49127251 + 105 NA exon (NM_002827, exon 1 of 10) exon (NM_002827, exon 1 of 10) 227 NM_001278618 5770 Hs.417549 NM_002827 HPRD:01477 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 561_WT_peak_2192 chr14 50234973 50235573 + 105 NA exon (NM_014315, exon 1 of 13) exon (NM_014315, exon 1 of 13) 486 NM_014315 23588 Hs.509264 NM_014315 HPRD:08824 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 561_WT_peak_5530 chr4 84152858 84153153 + 105 NA Intergenic Intergenic 53062 NM_015697 27235 Hs.144304 NM_015697 HPRD:13062 COQ2 CL640|COQ10D1|MSA1 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase protein-coding 561_WT_peak_4670 chr20 48210674 48211157 + 105 NA Intergenic Charlie8|DNA|hAT-Charlie -26208 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 561_WT_peak_3298 chr17 62128561 62128781 + 105 NA intron (NM_001433, intron 17 of 21) L1MC4|LINE|L1 -30677 NM_001099787 3384 Hs.431460 NM_000873 HPRD:00888 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 561_WT_peak_5841 chr5 81573811 81574536 + 105 NA promoter-TSS (NM_001025) promoter-TSS (NM_001025) 62 NM_001025 6228 Hs.527193 NM_001025 HPRD:04729 RPS23 S23 ribosomal protein S23 protein-coding 561_WT_peak_3114 chr17 30669044 30669358 + 105 NA promoter-TSS (NM_022344) promoter-TSS (NM_022344) 27 NM_022344 64149 Hs.655257 NM_022344 C17orf75 NJMU-R1 chromosome 17 open reading frame 75 protein-coding 561_WT_peak_2508 chr15 64126327 64126608 + 105 NA promoter-TSS (NM_003922) promoter-TSS (NM_003922) -320 NM_003922 8925 Hs.210385 NM_003922 HPRD:06894 HERC1 p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 561_WT_peak_4493 chr2 232478537 232479026 + 105 NA Intergenic CpG 21206 NM_152614 165100 Hs.98104 NM_152614 HPRD:14602 C2orf57 - chromosome 2 open reading frame 57 protein-coding 561_WT_peak_857 chr10 5339359 5339655 + 105 NA Intergenic MLT1C|LTR|ERVL-MaLR -67469 NM_053049 114131 Hs.511775 NM_053049 HPRD:12066 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 561_WT_peak_4259 chr2 112641508 112641729 + 105 NA 5' UTR (NM_022662, exon 1 of 48) 5' UTR (NM_022662, exon 1 of 48) 123 NM_022662 64682 Hs.436527 NM_022662 HPRD:09769 ANAPC1 APC1|MCPR|TSG24 anaphase promoting complex subunit 1 protein-coding 561_WT_peak_4045 chr2 43361241 43361464 + 105 NA Intergenic Intergenic 92393 NM_006887 678 Hs.503093 NM_006887 HPRD:18319 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 561_WT_peak_5330 chr3 177077721 177078002 + 105 NA Intergenic Intergenic 65631 NR_047465 100820709 Hs.518409 NR_047465 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 561_WT_peak_4268 chr2 113932853 113933095 + 105 NA intron (NM_012455, intron 1 of 16) intron (NM_012455, intron 1 of 16) 1414 NM_012455 23550 Hs.516306 NM_012455 HPRD:15191 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 561_WT_peak_5087 chr3 46019960 46020123 + 105 NA intron (NM_024513, intron 4 of 17) intron (NM_024513, intron 4 of 17) 17275 NM_024513 79443 Hs.200227 NM_024513 HPRD:06215 FYCO1 CATC2|CTRCT18|RUFY3|ZFYVE7 FYVE and coiled-coil domain containing 1 protein-coding 561_WT_peak_5584 chr4 119512735 119512757 + 105 NA promoter-TSS (NR_109983) promoter-TSS (NR_109983) -153 NR_109983 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 561_WT_peak_6570 chr7 1609720 1610042 + 105 NA promoter-TSS (NM_032302) promoter-TSS (NM_032302) 172 NR_021487 114796 Hs.436146 NR_021487 ENSG00000230487 PSMG3-AS1 - PSMG3 antisense RNA 1 (head to head) ncRNA 561_WT_peak_6615 chr7 23221566 23222048 + 105 NA exon (NM_007342, exon 1 of 7) exon (NM_007342, exon 1 of 7) 361 NM_007342 11097 Hs.408241 NM_007342 HPRD:14855 NUPL2 CG1|NLP-1|NLP_1|hCG1 nucleoporin like 2 protein-coding 561_WT_peak_3359 chr17 75136228 75136761 + 105 NA promoter-TSS (NM_001143999) promoter-TSS (NM_001143999) -511 NM_001039573 6397 Hs.464184 NM_003003 HPRD:03295 SEC14L1 PRELID4A|SEC14L SEC14-like 1 (S. cerevisiae) protein-coding 561_WT_peak_4853 chr22 22121452 22121667 + 105 NA intron (NM_002745, intron 8 of 8) intron (NM_002745, intron 8 of 8) -31488 NM_013313 29799 Hs.517436 NM_013313 HPRD:16277 YPEL1 - yippee-like 1 (Drosophila) protein-coding 561_WT_peak_2854 chr16 57481325 57481725 + 105 NA promoter-TSS (NM_020313) promoter-TSS (NM_020313) -156 NM_020313 57019 Hs.4900 NM_020313 HPRD:12338 CIAPIN1 2810413N20Rik|Anamorsin|DRE2|PRO0915 cytokine induced apoptosis inhibitor 1 protein-coding 561_WT_peak_5782 chr5 66502837 66503218 + 104 NA Intergenic Intergenic -10410 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 561_WT_peak_3256 chr17 55038164 55038453 + 104 NA exon (NM_004645, exon 1 of 7) exon (NM_004645, exon 1 of 7) 103 NM_004645 8161 Hs.532795 NM_004645 HPRD:02605 COIL CLN80|p80-coilin coilin protein-coding 561_WT_peak_195 chr1 40626979 40627284 + 104 NA promoter-TSS (NM_012421) promoter-TSS (NM_012421) 90 NM_012421 6018 Hs.205627 NM_012421 HPRD:01614 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 561_WT_peak_801 chr1 234746892 234747139 + 104 NA Intergenic CpG -1744 NM_001077397 359948 Hs.350268 NM_182972 HPRD:17160 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 561_WT_peak_3564 chr19 2085265 2085697 + 104 NA intron (NM_130807, intron 1 of 4) intron (NM_130807, intron 1 of 4) 10788 NM_130807 126308 Hs.744938 NM_130807 HPRD:17583 MOB3A MOB1C|MOBKL2A|moblak MOB kinase activator 3A protein-coding 561_WT_peak_4915 chr22 39097135 39097528 + 104 NA promoter-TSS (NM_014876) promoter-TSS (NM_014876) -872 NM_014876 9929 Hs.3094 NM_014876 HPRD:08823 JOSD1 dJ508I15.2 Josephin domain containing 1 protein-coding 561_WT_peak_6286 chr6 32753746 32753958 + 104 NA Intergenic Intergenic -22522 NM_001300790 3120 Hs.731563 NM_182549 HPRD:09983 HLA-DQB2 HLA-DQB1|HLA-DXB major histocompatibility complex, class II, DQ beta 2 protein-coding 561_WT_peak_2919 chr16 80574442 80574750 + 104 NA promoter-TSS (NM_130897) promoter-TSS (NM_130897) -258 NM_130897 83657 Hs.98849 NM_130897 HPRD:06204 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein, light chain, roadblock-type 2 protein-coding 561_WT_peak_4632 chr20 37075102 37075584 + 104 NA promoter-TSS (NR_003239) promoter-TSS (NR_003239) 46 NR_003239 128439 Hs.16936 NM_139016 HPRD:11814 SNHG11 C20orf198|LINC00101|NCRNA00101 small nucleolar RNA host gene 11 (non-protein coding) ncRNA 561_WT_peak_777 chr1 228763792 228764066 + 104 NA Intergenic CpG -16465 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_2433 chr15 39916981 39917273 + 104 NA intron (NM_152597, intron 10 of 11) intron (NM_152597, intron 10 of 11) 43847 NM_003246 7057 Hs.164226 NM_003246 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 561_WT_peak_7634 chrX 155260008 155260433 + 104 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat -2372 NR_110561 727856 Hs.740212 NR_110561 DDX11L16 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16 pseudo 561_WT_peak_3835 chr19 49122225 49122593 + 104 NA promoter-TSS (NM_020126) promoter-TSS (NM_020126) -139 NM_001243876 56848 Hs.528006 NM_020126 HPRD:06157 SPHK2 SK 2|SK-2|SPK 2|SPK-2 sphingosine kinase 2 protein-coding 561_WT_peak_929 chr10 28821696 28822016 + 104 NA promoter-TSS (NM_016628) promoter-TSS (NM_016628) 339 NM_100264 51322 Hs.743224 NM_016628 HPRD:18291 WAC BM-016|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 561_WT_peak_6045 chr5 179125011 179125601 + 104 NA promoter-TSS (NM_001746) promoter-TSS (NM_001746) -624 NM_001024649 821 Hs.567968 NM_001746 HPRD:00252 CANX CNX|IP90|P90 calnexin protein-coding 561_WT_peak_1977 chr13 31038395 31038679 + 104 NA intron (NM_002128, intron 1 of 4) intron (NM_002128, intron 1 of 4) 1544 NM_002128 3146 Hs.434102 NM_002128 HPRD:01228 HMGB1 HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 561_WT_peak_7045 chr8 67579887 67580144 + 104 NA promoter-TSS (NM_025054) promoter-TSS (NM_025054) 228 NM_001204173 100533105 Hs.613417 NM_001204173 C8orf44-SGK3 - C8orf44-SGK3 readthrough protein-coding 561_WT_peak_4794 chr21 38738181 38738475 + 104 NA Intergenic Intergenic -1531 NM_101395 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 561_WT_peak_2184 chr14 45430736 45431679 + 104 NA promoter-TSS (NM_017658) promoter-TSS (NM_017658) -28 NM_017658 54813 Hs.550906 NM_017658 HPRD:12539 KLHL28 BTBD5 kelch-like family member 28 protein-coding 561_WT_peak_4017 chr2 30670331 30670851 + 104 NA intron (NM_182551, intron 1 of 6) CpG 454 NM_001002257 253558 Hs.468048 NM_182551 HPRD:17458 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 561_WT_peak_1849 chr12 110517275 110517953 + 104 NA Intergenic Intergenic -12114 NM_207435 400073 Hs.44817 NM_207435 HPRD:13443 C12orf76 - chromosome 12 open reading frame 76 protein-coding 561_WT_peak_3516 chr18 59854538 59854805 + 104 NA promoter-TSS (NM_012327) promoter-TSS (NM_012327) 147 NM_020854 57614 Hs.465323 NM_020854 HPRD:13866 KIAA1468 HsT3308|HsT885 KIAA1468 protein-coding 561_WT_peak_1909 chr12 123465243 123465503 + 104 NA TTS (NM_024623) TTS (NM_024623) 766 NM_001002252 51329 Hs.103561 NM_016638 HPRD:09640 ARL6IP4 SFRS20|SR-25|SRp25|SRrp37 ADP-ribosylation factor-like 6 interacting protein 4 protein-coding 561_WT_peak_7299 chr9 74398022 74398355 + 104 NA Intergenic Intergenic -14388 NM_001135820 23670 Hs.494146 NM_013390 HPRD:09317 TMEM2 - transmembrane protein 2 protein-coding 561_WT_peak_1837 chr12 106751452 106751804 + 104 NA promoter-TSS (NM_001160708) promoter-TSS (NM_001160708) 192 NM_018082 55703 Hs.62696 NM_018082 HPRD:11447 POLR3B C128|HLD8|RPC2 polymerase (RNA) III (DNA directed) polypeptide B protein-coding 561_WT_peak_549 chr1 155532144 155532466 + 104 NA promoter-TSS (NM_018489) promoter-TSS (NM_018489) 19 NM_018489 55870 Hs.491060 NM_018489 HPRD:06416 ASH1L ASH1|ASH1L1|KMT2H ash1 (absent, small, or homeotic)-like (Drosophila) protein-coding 561_WT_peak_2176 chr14 36211765 36211918 + 103 NA intron (NM_194301, intron 10 of 39) MER6A|DNA|TcMar-Tigger 66509 NR_104269 26134 Hs.113150 NR_104269 RALGAPA1P GARNL2|GARNL2P|bA235C23.1 Ral GTPase activating protein, alpha subunit 1 (catalytic) pseudogene pseudo 561_WT_peak_6039 chr5 178286785 178287064 + 103 NA promoter-TSS (NM_058230) promoter-TSS (NM_058230) -30 NM_058230 117608 Hs.724051 NM_058230 ZNF354B KID2 zinc finger protein 354B protein-coding 561_WT_peak_4744 chr21 15755513 15755718 + 103 NA promoter-TSS (NM_006948) promoter-TSS (NM_006948) -106 NM_006948 6782 Hs.352341 NM_006948 HPRD:03061 HSPA13 STCH heat shock protein 70kDa family, member 13 protein-coding 561_WT_peak_6410 chr6 99873373 99873951 + 103 NA promoter-TSS (NM_015491) promoter-TSS (NM_015491) -455 NM_032870 25957 Hs.520287 NM_015491 HPRD:10787 PNISR C6orf111|HSPC306|SFRS18|SRrp130|bA98I9.2 PNN-interacting serine/arginine-rich protein protein-coding 561_WT_peak_2179 chr14 39639188 39639884 + 103 NA promoter-TSS (NM_001079537) promoter-TSS (NM_001079537) 98 NM_177452 122553 Hs.13303 NM_177452 HPRD:18221 TRAPPC6B TPC6 trafficking protein particle complex 6B protein-coding 561_WT_peak_7308 chr9 77642953 77643204 + 103 NA exon (NM_152420, exon 1 of 8) exon (NM_152420, exon 1 of 8) 232 NM_152420 138199 Hs.567688 NM_152420 HPRD:12958 C9orf41 - chromosome 9 open reading frame 41 protein-coding 561_WT_peak_4977 chr22 50968586 50969118 + 103 NA promoter-TSS (NM_001257989) promoter-TSS (NM_001257989) -338 NM_001257989 1890 Hs.180903 NM_001953 HPRD:08833 TYMP ECGF|ECGF1|MEDPS1|MNGIE|MTDPS1|PDECGF|TP|hPD-ECGF thymidine phosphorylase protein-coding 561_WT_peak_5887 chr5 118644525 118645004 + 103 NA intron (NM_001077654, intron 1 of 1) intron (NM_001077654, intron 1 of 1) -24106 NM_001286814 25816 Hs.618488 NM_014350 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 tumor necrosis factor, alpha-induced protein 8 protein-coding 561_WT_peak_1518 chr11 124670025 124670438 + 103 NA promoter-TSS (NM_001301087) promoter-TSS (NM_001301087) 68 NM_001301087 79684 Hs.146079 NM_024631 HPRD:08024 MSANTD2 C11orf61 Myb/SANT-like DNA-binding domain containing 2 protein-coding 561_WT_peak_7486 chr9 139980727 139981059 + 103 NA promoter-TSS (NR_045720) promoter-TSS (NR_045720) 376 NR_027447 100289341 Hs.593896 NR_027447 MAN1B1-AS1 - MAN1B1 antisense RNA 1 (head to head) ncRNA 561_WT_peak_6351 chr6 53213355 53213771 + 103 NA intron (NM_001242830, intron 1 of 6) CpG 414 NM_021814 60481 Hs.520189 NM_021814 HPRD:13268 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 561_WT_peak_6882 chr7 148581894 148582118 + 103 NA promoter-TSS (NM_004456) promoter-TSS (NM_004456) -565 NM_001203248 2146 Hs.444082 NM_004456 HPRD:03342 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 561_WT_peak_5688 chr5 35811220 35811635 + 103 NA intron (NM_024867, intron 36 of 36) intron (NM_024867, intron 36 of 36) -45550 NM_002185 3575 Hs.591742 NM_002185 HPRD:00893 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 561_WT_peak_6262 chr6 30457175 30457721 + 103 NA intron (NM_005516, intron 1 of 7).5 CpG 265 NM_005516 3133 Hs.650174 NM_005516 HPRD:00877 HLA-E EA1.2|EA2.1|HLA-6.2|MHC|QA1 major histocompatibility complex, class I, E protein-coding 561_WT_peak_356 chr1 109505637 109505993 + 103 NA intron (NM_015127, intron 1 of 11) CpG 306 NM_001048210 23155 Hs.658489 NM_015127 HPRD:17471 CLCC1 MCLC chloride channel CLIC-like 1 protein-coding 561_WT_peak_3250 chr17 49337802 49338262 + 103 NA promoter-TSS (NM_017643) promoter-TSS (NM_017643) 135 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit (SSU) processome component homolog (yeast) protein-coding 561_WT_peak_949 chr10 35415803 35416199 + 103 NA promoter-TSS (NM_183060) promoter-TSS (NM_183060) 232 NR_051975 1390 Hs.200250 NM_001881 HPRD:00444 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 561_WT_peak_1321 chr11 62554136 62554763 + 103 NA promoter-TSS (NM_199337) promoter-TSS (NM_199337) -425 NM_199337 374395 Hs.381134 NM_199337 HPRD:14186 TMEM179B - transmembrane protein 179B protein-coding 561_WT_peak_1781 chr12 80328548 80328879 + 103 NA promoter-TSS (NM_001244992) promoter-TSS (NM_001244992) 18 NM_001244992 4659 Hs.49582 NM_002480 HPRD:03606 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1, regulatory subunit 12A protein-coding 561_WT_peak_6443 chr6 112607296 112607676 + 103 NA intron (NR_121193, intron 2 of 2) intron (NR_121193, intron 2 of 2) -31569 NM_001105209 3910 Hs.654572 NM_002290 HPRD:02532 LAMA4 CMD1JJ|LAMA3|LAMA4*-1 laminin, alpha 4 protein-coding 561_WT_peak_897 chr10 17065504 17065978 + 103 NA intron (NM_001081, intron 27 of 66) intron (NM_001081, intron 27 of 66) 106075 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 561_WT_peak_6887 chr7 148762871 148763182 + 103 NA Intergenic CpG 24843 NM_152411 136051 Hs.729572 NM_152411 HPRD:13232 ZNF786 - zinc finger protein 786 protein-coding 561_WT_peak_506 chr1 150206947 150207609 + 103 NA promoter-TSS (NM_001136479) promoter-TSS (NM_001136479) -252 NM_001136479 81611 Hs.656466 NM_030920 HPRD:16493 ANP32E LANP-L|LANPL acidic (leucine-rich) nuclear phosphoprotein 32 family, member E protein-coding 561_WT_peak_4982 chr3 3221144 3221389 + 103 NA intron (NM_016302, intron 1 of 10) CpG 135 NM_016302 51185 Hs.18925 NM_016302 HPRD:16750 CRBN MRT2|MRT2A cereblon protein-coding 561_WT_peak_6209 chr6 27706333 27706601 + 103 NA Intergenic AluSx|SINE|Alu -23056 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 561_WT_peak_5757 chr5 55308397 55308737 + 103 NA Intergenic MIR|SINE|MIR 17572 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 561_WT_peak_1431 chr11 82782942 82783521 + 103 NA promoter-TSS (NM_001286061) promoter-TSS (NM_001286061) 123 NR_038903 100506233 Hs.503429 NR_038903 ENSG00000246067 RAB30-AS1 - RAB30 antisense RNA 1 (head to head) ncRNA 561_WT_peak_3606 chr19 8578730 8579096 + 103 NA intron (NM_032370, intron 1 of 5) CpG 135 NM_032370 84330 Hs.515114 NM_032370 HPRD:17511 ZNF414 ZFP414 zinc finger protein 414 protein-coding 561_WT_peak_3690 chr19 19700457 19700882 + 103 NA intron (NR_038198, intron 2 of 7) intron (NR_038198, intron 2 of 7) 29056 NM_025245 80714 Hs.466257 NM_025245 HPRD:16287 PBX4 - pre-B-cell leukemia homeobox 4 protein-coding 561_WT_peak_5079 chr3 44552351 44552516 + 103 NA promoter-TSS (NM_001287349) promoter-TSS (NM_001287349) -301 NM_001287349 285346 Hs.648974 NM_001287349 ZNF852 - zinc finger protein 852 protein-coding 561_WT_peak_947 chr10 33428034 33428073 + 103 NA Intergenic Intergenic -180760 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 561_WT_peak_3618 chr19 10613060 10613743 + 103 NA promoter-TSS (NM_012289) promoter-TSS (NM_012289) 80 NM_012289 9817 Hs.465870 NM_012289 HPRD:12079 KEAP1 INrf2|KLHL19 kelch-like ECH-associated protein 1 protein-coding 561_WT_peak_25 chr1 2477849 2478054 + 103 NA Intergenic CpG -9853 NM_001297605 8764 Hs.512898 NM_003820 HPRD:04122 TNFRSF14 ATAR|CD270|HVEA|HVEM|LIGHTR|TR2 tumor necrosis factor receptor superfamily, member 14 protein-coding 561_WT_peak_904 chr10 18940296 18940649 + 103 NA promoter-TSS (NM_182543) promoter-TSS (NM_182543) 94 NM_182543 221078 Hs.396175 NM_182543 HPRD:14843 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun domain family, member 6 protein-coding 561_WT_peak_5046 chr3 30686228 30686421 + 103 NA exon (NM_003242, exon 2 of 7) exon (NM_003242, exon 2 of 7) 38330 NM_003242 7048 Hs.82028 NM_003242 HPRD:01823 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 561_WT_peak_565 chr1 156710833 156711316 + 103 NA promoter-TSS (NM_024540) promoter-TSS (NM_024540) -151 NM_024540 79590 Hs.418233 NM_024540 HPRD:14749 MRPL24 L24mt|MRP-L18|MRP-L24 mitochondrial ribosomal protein L24 protein-coding 561_WT_peak_1720 chr12 56109899 56110167 + 103 NA promoter-TSS (NR_037656) promoter-TSS (NR_037656) -43 NR_037657 2647 Hs.94672 NM_001487 HPRD:03263 BLOC1S1 BLOS1|GCN5L1|MICoA|RT14 biogenesis of lysosomal organelles complex-1, subunit 1 protein-coding 561_WT_peak_1975 chr13 30424559 30424857 + 103 NA 5' UTR (NM_007106, exon 1 of 5) 5' UTR (NM_007106, exon 1 of 5) 112 NM_007106 5412 Hs.145575 NM_007106 HPRD:05275 UBL3 HCG-1|PNSC1 ubiquitin-like 3 protein-coding 561_WT_peak_6075 chr6 2543179 2543363 + 103 NA Intergenic MER72|LTR|ERV1 92027 NM_152554 154386 Hs.680574 NM_152554 C6orf195 bA145H9.2 chromosome 6 open reading frame 195 protein-coding 561_WT_peak_712 chr1 207999185 207999524 + 103 NA Intergenic Intergenic 7630 NR_026817 148696 Hs.125511 NM_001039568 LOC148696 - uncharacterized LOC148696 ncRNA 561_WT_peak_3750 chr19 38397671 38397931 + 103 NA promoter-TSS (NM_031951) promoter-TSS (NM_031951) -60 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 561_WT_peak_2361 chr14 100535058 100535344 + 103 NA intron (NM_016337, intron 1 of 13) intron (NM_016337, intron 1 of 13) 3450 NM_016337 51466 Hs.125867 NM_016337 HPRD:10942 EVL RNB6 Enah/Vasp-like protein-coding 561_WT_peak_3960 chr2 9922548 9922734 + 103 NA Intergenic Intergenic -60930 NM_005680 9014 Hs.584833 NM_005680 HPRD:05363 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa protein-coding 561_WT_peak_3187 chr17 41150266 41150668 + 103 NA promoter-TSS (NM_000988) promoter-TSS (NM_000988) 21 NM_000988 6155 Hs.514196 NM_000988 HPRD:09602 RPL27 L27 ribosomal protein L27 protein-coding 561_WT_peak_6107 chr6 14117916 14118175 + 103 NA exon (NM_004233, exon 1 of 5) exon (NM_004233, exon 1 of 5) 180 NM_004233 9308 Hs.595133 NM_004233 HPRD:05170 CD83 BL11|HB15 CD83 molecule protein-coding 561_WT_peak_2428 chr15 38945251 38945545 + 103 NA Intergenic Intergenic -43401 NM_207444 400359 Hs.448785 NM_207444 HPRD:13418 C15orf53 - chromosome 15 open reading frame 53 protein-coding 561_WT_peak_4881 chr22 30838481 30838679 + 103 NA Intergenic MER41B|LTR|ERV1 16969 NM_001003704 51537 Hs.713636 NM_016498 HPRD:17612 MTFP1 MTP18 mitochondrial fission process 1 protein-coding 561_WT_peak_4581 chr20 23342218 23342578 + 102 NA Intergenic CpG -2623 NM_022482 64412 Hs.709462 NM_022482 HPRD:15778 GZF1 ZBTB23|ZNF336 GDNF-inducible zinc finger protein 1 protein-coding 561_WT_peak_7245 chr9 34178988 34179253 + 102 NA non-coding (NR_033243, exon 1 of 8) non-coding (NR_033243, exon 1 of 8) 117 NR_033243 51271 Hs.268963 NM_016525 HPRD:15597 UBAP1 NAG20|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 561_WT_peak_4677 chr20 48808717 48808986 + 102 NA promoter-TSS (NR_125739) promoter-TSS (NR_125739) -245 NR_125739 101927559 Hs.442486 NR_125739 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA 561_WT_peak_7444 chr9 131709666 131709868 + 102 NA promoter-TSS (NM_015354) promoter-TSS (NM_015354) -205 NM_015354 23511 Hs.308340 NM_015354 HPRD:18582 NUP188 KIAA0169|hNup188 nucleoporin 188kDa protein-coding 561_WT_peak_6088 chr6 5004031 5004580 + 102 NA promoter-TSS (NM_006638) promoter-TSS (NM_006638) -8 NM_001286132 10799 Hs.511756 NM_006638 HPRD:09361 RPP40 RNASEP1|bA428J1.3 ribonuclease P/MRP 40kDa subunit protein-coding 561_WT_peak_4054 chr2 44396391 44396773 + 102 NA intron (NM_177969, intron 1 of 4) CpG 582 NM_001033556 5495 Hs.416769 NM_002706 HPRD:04796 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent, 1B protein-coding 561_WT_peak_4760 chr21 30396714 30397196 + 102 NA promoter-TSS (NM_001001992) promoter-TSS (NM_001001992) 17 NM_006447 10600 Hs.99819 NM_006447 HPRD:06881 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 561_WT_peak_5036 chr3 20145828 20146096 + 102 NA intron (NM_003884, intron 5 of 17) intron (NM_003884, intron 5 of 17) 64438 NM_003884 8850 Hs.533055 NM_003884 HPRD:06780 KAT2B CAF|P/CAF|PCAF K(lysine) acetyltransferase 2B protein-coding 561_WT_peak_2311 chr14 81408116 81408318 + 102 NA Intergenic Intergenic -2333 NM_152446 145508 Hs.162889 NM_152446 HPRD:09834 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128kDa protein-coding 561_WT_peak_5599 chr4 140216662 140217046 + 102 NA intron (NM_001184989, intron 3 of 5) CpG 5510 NM_001184991 4717 Hs.84549 NM_002494 HPRD:11959 NDUFC1 KFYI NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa protein-coding 561_WT_peak_1950 chr13 22685638 22685838 + 102 NA Intergenic LTR54B|LTR|ERV1 -98686 NR_103810 100506622 Hs.255773 NR_103810 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 561_WT_peak_2736 chr16 22448243 22448552 + 102 NA promoter-TSS (NR_027154) promoter-TSS (NR_027154) 68 NR_027154 641298 Hs.552700 NM_199284 ENSG00000237296 SMG1P1 - SMG1 pseudogene 1 pseudo 561_WT_peak_2646 chr16 1020739 1020936 + 102 NA exon (NM_022773, exon 1 of 11) exon (NM_022773, exon 1 of 11) 147 NR_033646 64788 Hs.71912 NM_022773 HPRD:07789 LMF1 C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A lipase maturation factor 1 protein-coding 561_WT_peak_6926 chr8 8086174 8086425 + 102 NA non-coding (NR_024363, exon 1 of 6) non-coding (NR_024363, exon 1 of 6) 207 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 561_WT_peak_2536 chr15 69745193 69745588 + 102 NA intron (NM_213725, intron 1 of 2) CpG 231 NM_001003 6176 Hs.356502 NM_001003 HPRD:01611 RPLP1 LP1|P1|RPP1 ribosomal protein, large, P1 protein-coding 561_WT_peak_4887 chr22 31886070 31886503 + 102 NA promoter-TSS (NM_001164501) promoter-TSS (NM_001164501) -412 NM_019843 56478 Hs.517559 NM_019843 HPRD:10456 EIF4ENIF1 4E-T|Clast4 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 561_WT_peak_7188 chr8 145158613 145158813 + 102 NA promoter-TSS (NM_032272) promoter-TSS (NM_032272) 425 NR_038270 81858 Hs.529755 NM_030974 HPRD:15463 SHARPIN SIPL1 SHANK-associated RH domain interactor protein-coding 561_WT_peak_6168 chr6 26313187 26313562 + 102 NA Intergenic tRNA-Met-i|tRNA|tRNA -27647 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 561_WT_peak_2864 chr16 66556133 66556353 + 102 NA intron (NR_073520, intron 5 of 8) intron (NR_073520, intron 5 of 8) 27485 NM_001272050 7084 Hs.512619 NM_004614 HPRD:01770 TK2 MTDPS2|MTTK thymidine kinase 2, mitochondrial protein-coding 561_WT_peak_3799 chr19 45954266 45954880 + 102 NA Intergenic Intergenic -16680 NM_001114171 2354 Hs.590958 NM_006732 HPRD:01270 FOSB AP-1|G0S3|GOS3|GOSB FBJ murine osteosarcoma viral oncogene homolog B protein-coding 561_WT_peak_4815 chr21 44313444 44313658 + 102 NA intron (NM_001001503, intron 1 of 2) CpG 173 NM_021075 4731 Hs.473937 NM_021075 NDUFV3 CI-10k|CI-9KD NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa protein-coding 561_WT_peak_6776 chr7 99942918 99943147 + 102 NA intron (NR_036569, intron 3 of 17) LTR13|LTR|ERVK -6909 NR_103728 101752334 Hs.521075 NR_103728 PVRIG2P - poliovirus receptor related immunoglobulin domain containing 2, pseudogene pseudo 561_WT_peak_4862 chr22 26824511 26824871 + 102 NA promoter-TSS (NM_020437) promoter-TSS (NM_020437) -589 NM_020437 57168 Hs.567547 NM_020437 HPRD:14255 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 561_WT_peak_265 chr1 63988785 63989217 + 102 NA promoter-TSS (NM_032437) promoter-TSS (NM_032437) -12 NM_032437 84455 Hs.652324 NM_032437 HPRD:17226 EFCAB7 - EF-hand calcium binding domain 7 protein-coding 561_WT_peak_3869 chr19 50837191 50837434 + 102 NA promoter-TSS (NR_110912) promoter-TSS (NR_110912) -540 NR_110912 3748 Hs.467146 NM_004977 HPRD:08886 KCNC3 KSHIIID|KV3.3|SCA13 potassium voltage-gated channel, Shaw-related subfamily, member 3 protein-coding 561_WT_peak_2914 chr16 78133357 78133562 + 102 NA non-coding (NR_120436, exon 1 of 6) non-coding (NR_120436, exon 1 of 6) 149 NR_120435 51741 Hs.461453 NM_016373 HPRD:05501 WWOX D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 561_WT_peak_2030 chr13 45973097 45973391 + 102 NA intron (NM_001010875, intron 7 of 9) intron (NM_001010875, intron 7 of 9) -19053 NR_047031 100874259 Hs.658038 NR_047031 SLC25A30-AS1 - SLC25A30 antisense RNA 1 ncRNA 561_WT_peak_1119 chr10 102270838 102271096 + 102 NA intron (NM_015490, intron 3 of 25) intron (NM_015490, intron 3 of 25) 8628 NM_015490 25956 Hs.18889 NM_015490 HPRD:15315 SEC31B SEC31B-1|SEC31L2 SEC31 homolog B (S. cerevisiae) protein-coding 561_WT_peak_2226 chr14 56826124 56826310 + 102 NA Intergenic MER83C|LTR|ERV1 -220294 NM_017799 54916 Hs.497253 NM_017799 HPRD:12624 TMEM260 C14orf101 transmembrane protein 260 protein-coding 561_WT_peak_3236 chr17 47295440 47295630 + 102 NA intron (NM_001135186, intron 3 of 7) intron (NM_001135186, intron 3 of 7) -7599 NM_001198754 2793 Hs.181781 NM_031498 HPRD:06792 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 protein-coding 561_WT_peak_5800 chr5 70363360 70363776 + 102 NA promoter-TSS (NM_001515) promoter-TSS (NM_001515) -71 NM_001515 2966 Hs.191356 NM_001515 HPRD:03450 GTF2H2 BTF2|BTF2P44|T-BTF2P44|TFIIH|p44 general transcription factor IIH, polypeptide 2, 44kDa protein-coding 561_WT_peak_2686 chr16 5121724 5122049 + 102 NA promoter-TSS (NM_019109) promoter-TSS (NM_019109) 76 NM_019109 56052 Hs.592086 NM_019109 ALG1 CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase protein-coding 561_WT_peak_130 chr1 27113879 27114381 + 102 NA promoter-TSS (NM_017837) promoter-TSS (NM_017837) -324 NM_017837 55650 Hs.259605 NM_017837 HPRD:07912 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis, class V protein-coding 561_WT_peak_640 chr1 180471724 180472139 + 102 NA promoter-TSS (NM_032360) promoter-TSS (NM_032360) 91 NM_032360 84320 Hs.200051 NM_032360 HPRD:12416 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 561_WT_peak_1344 chr11 64902092 64902437 + 102 NA promoter-TSS (NM_032431) promoter-TSS (NM_032431) -261 NM_172230 84447 Hs.75859 NM_032431 HPRD:07618 SYVN1 DER3|HRD1 synovial apoptosis inhibitor 1, synoviolin protein-coding 561_WT_peak_5848 chr5 90576338 90576567 + 102 NA Intergenic CpG 33767 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 561_WT_peak_4984 chr3 4508545 4508928 + 102 NA exon (NM_182760, exon 1 of 9) exon (NM_182760, exon 1 of 9) 230 NM_001164674 285362 Hs.350475 NM_182760 HPRD:06399 SUMF1 AAPA3037|FGE sulfatase modifying factor 1 protein-coding 561_WT_peak_7001 chr8 42698130 42698448 + 102 NA 5' UTR (NM_018105, exon 1 of 3) 5' UTR (NM_018105, exon 1 of 3) 185 NM_018105 55145 Hs.7432 NM_018105 HPRD:15496 THAP1 DYT6 THAP domain containing, apoptosis associated protein 1 protein-coding 561_WT_peak_1623 chr12 16034944 16035293 + 102 NA promoter-TSS (NM_007178) promoter-TSS (NM_007178) -170 NM_007178 11171 Hs.743971 NM_007178 HPRD:05816 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 561_WT_peak_3945 chr2 2617092 2617394 + 102 NA Intergenic Intergenic -282198 NM_015025 23040 Hs.434418 NM_015025 HPRD:14797 MYT1L NZF1|ZC2HC4B myelin transcription factor 1-like protein-coding 561_WT_peak_6468 chr6 130453019 130453615 + 102 NA intron (NM_001007102, intron 19 of 21) L1ME3A|LINE|L1 83713 NM_001277185 154075 Hs.440508 NM_152552 HPRD:11530 SAMD3 - sterile alpha motif domain containing 3 protein-coding 561_WT_peak_162 chr1 33282811 33283061 + 102 NA promoter-TSS (NM_022753) promoter-TSS (NM_022753) -107 NM_001256121 64766 Hs.440880 NM_022753 HPRD:07803 S100PBP S100PBPR S100P binding protein protein-coding 561_WT_peak_3773 chr19 41816078 41816314 + 102 NA 5' UTR (NM_052848, exon 1 of 5) 5' UTR (NM_052848, exon 1 of 5) 102 NM_052848 90324 Hs.437497 NM_052848 HPRD:14467 CCDC97 - coiled-coil domain containing 97 protein-coding 561_WT_peak_56 chr1 10570969 10571348 + 102 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 36155 NM_004565 5195 Hs.149983 NM_004565 HPRD:03477 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 561_WT_peak_4040 chr2 42360171 42360433 + 102 NA Intergenic Intergenic -36188 NM_001145076 27436 Hs.713173 NM_019063 HPRD:06310 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 561_WT_peak_1491 chr11 116724422 116724668 + 101 NA intron (NM_025164, intron 20 of 23) intron (NM_025164, intron 20 of 23) -16207 NM_000039 335 Hs.93194 NM_000039 HPRD:02517 APOA1 - apolipoprotein A-I protein-coding 561_WT_peak_306 chr1 87169829 87170119 + 101 NA promoter-TSS (NM_001206653) promoter-TSS (NM_001206653) -279 NM_016009 51100 Hs.136309 NM_016009 HPRD:15333 SH3GLB1 Bif-1|PPP1R70|dJ612B15.2 SH3-domain GRB2-like endophilin B1 protein-coding 561_WT_peak_5235 chr3 124449269 124449642 + 101 NA non-coding (NR_033434, exon 1 of 5) non-coding (NR_033434, exon 1 of 5) 242 NR_033434 7372 Hs.2057 NM_000373 UMPS OPRT uridine monophosphate synthetase protein-coding 561_WT_peak_6379 chr6 79788018 79788314 + 101 NA promoter-TSS (NM_017934) promoter-TSS (NM_017934) -155 NM_017934 55023 Hs.511817 NM_017934 HPRD:10152 PHIP BRWD2|DCAF14|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 561_WT_peak_1549 chr12 2985649 2986319 + 101 NA promoter-TSS (NM_001252499) promoter-TSS (NM_001252499) 337 NM_001243089 2305 Hs.239 NM_021953 HPRD:03823 FOXM1 FKHL16|FOXM1B|HFH-11|HFH11|HNF-3|INS-1|MPHOSPH2|MPP-2|MPP2|PIG29|TGT3|TRIDENT forkhead box M1 protein-coding 561_WT_peak_1130 chr10 104153687 104154086 + 101 NA promoter-TSS (NM_001077494) promoter-TSS (NM_001077494) 19 NM_001288724 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 561_WT_peak_2556 chr15 75495038 75495299 + 101 NA intron (NM_015492, intron 1 of 2) CpG 947 NM_015492 56905 Hs.17936 NM_015492 HPRD:13154 C15orf39 - chromosome 15 open reading frame 39 protein-coding 561_WT_peak_1649 chr12 32112002 32112371 + 101 NA promoter-TSS (NM_018169) promoter-TSS (NM_018169) -167 NM_018169 55196 Hs.445129 NM_018169 HPRD:07691 KIAA1551 C12orf35 KIAA1551 protein-coding 561_WT_peak_1703 chr12 52366644 52366872 + 101 NA intron (NM_020327, intron 1 of 8) intron (NM_020327, intron 1 of 8) 19594 NM_020327 91 Hs.438918 NM_004302 HPRD:03193 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor, type IB protein-coding 561_WT_peak_4290 chr2 128459744 128460038 + 101 NA 3' UTR (NM_032740, exon 1 of 1) 3' UTR (NM_032740, exon 1 of 1) 1294 NM_032740 84826 Hs.345849 NM_032740 HPRD:14683 SFT2D3 - SFT2 domain containing 3 protein-coding 561_WT_peak_4387 chr2 183989140 183989334 + 101 NA intron (NR_109856, intron 1 of 7) intron (NR_109856, intron 1 of 7) 154 NM_001287585 129401 Hs.180591 NM_138285 HPRD:10486 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35kDa protein-coding 561_WT_peak_2560 chr15 75932148 75932481 + 101 NA exon (NM_018285, exon 1 of 1) exon (NM_018285, exon 1 of 1) 350 NM_018285 55272 Hs.513043 NM_018285 HPRD:12664 IMP3 BRMS2|C15orf12|MRPS4 IMP3, U3 small nucleolar ribonucleoprotein protein-coding 561_WT_peak_6001 chr5 158634841 158635111 + 101 NA promoter-TSS (NM_144726) promoter-TSS (NM_144726) -142 NM_144726 153830 Hs.349306 NM_144726 HPRD:08113 RNF145 - ring finger protein 145 protein-coding 561_WT_peak_3681 chr19 18401176 18401434 + 101 NA Intergenic Intergenic 8418 NR_036155 100422833 NR_036155 miRBase:MI0014232 MIR3188 - microRNA 3188 ncRNA 561_WT_peak_4230 chr2 99224865 99225069 + 101 NA promoter-TSS (NM_014044) promoter-TSS (NM_014044) 14 NM_001008215 493753 Hs.596537 NM_001008215 HPRD:17563 COA5 6330578E17Rik|C2orf64|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 561_WT_peak_430 chr1 144519993 144520264 + 101 NA intron (NM_001278267, intron 52 of 130) CpG 92591 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 561_WT_peak_3702 chr19 21688456 21688712 + 101 NA intron (NM_001001415, intron 1 of 3) intron (NM_001001415, intron 1 of 3) 147 NM_001001415 353088 Hs.572567 NM_001001415 HPRD:18342 ZNF429 - zinc finger protein 429 protein-coding 561_WT_peak_7038 chr8 66863789 66864083 + 101 NA Intergenic Intergenic -69855 NM_033105 85479 Hs.491885 NM_033105 HPRD:07474 DNAJC5B CSP-beta DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding 561_WT_peak_2244 chr14 61919349 61919524 + 101 NA intron (NM_006255, intron 6 of 13) intron (NM_006255, intron 6 of 13) 117476 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 561_WT_peak_4126 chr2 70141527 70141808 + 101 NA promoter-TSS (NM_001202514) promoter-TSS (NM_001202514) -506 NM_001202514 4084 Hs.468908 NM_002357 HPRD:02487 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 561_WT_peak_1341 chr11 64884804 64885157 + 101 NA exon (NM_014205, exon 1 of 1) exon (NM_014205, exon 1 of 1) 190 NM_014205 741 Hs.121025 NM_014205 HPRD:05200 ZNHIT2 C11orf5|FON zinc finger, HIT-type containing 2 protein-coding 561_WT_peak_5885 chr5 118406658 118406959 + 101 NA promoter-TSS (NM_005509) promoter-TSS (NM_005509) -276 NM_001290322 1657 Hs.181042 NM_005509 HPRD:09294 DMXL1 - Dmx-like 1 protein-coding 561_WT_peak_2643 chr16 577431 577646 + 101 NA promoter-TSS (NM_005632) promoter-TSS (NM_005632) -131 NR_024121 64493 Hs.721553 NR_024121 LINC00235 C16orf10|NCRNA00235 long intergenic non-protein coding RNA 235 ncRNA 561_WT_peak_4453 chr2 206949824 206950192 + 101 NA intron (NM_017759, intron 1 of 10) CpG 898 NM_017759 54891 Hs.445036 NM_017759 HPRD:07894 INO80D - INO80 complex subunit D protein-coding 561_WT_peak_6363 chr6 64345821 64346173 + 101 NA promoter-TSS (NM_001290260) promoter-TSS (NM_001290260) 290 NM_001290259 23469 Hs.348921 NM_015153 HPRD:08477 PHF3 - PHD finger protein 3 protein-coding 561_WT_peak_1845 chr12 109531115 109531395 + 101 NA promoter-TSS (NM_001145375) promoter-TSS (NM_001145375) 38 NM_001205180 121642 Hs.374458 NM_001001655 HPRD:14712 ALKBH2 ABH2 alkB, alkylation repair homolog 2 (E. coli) protein-coding 561_WT_peak_360 chr1 109968699 109969015 + 101 NA intron (NM_001199774, intron 1 of 8) CpG 213 NM_001199772 5686 Hs.485246 NM_002790 HPRD:01464 PSMA5 PSC5|ZETA proteasome (prosome, macropain) subunit, alpha type, 5 protein-coding 561_WT_peak_387 chr1 113161319 113161880 + 101 NA promoter-TSS (NM_006135) promoter-TSS (NM_006135) 441 NM_138727 54879 Hs.201921 NM_017744 HPRD:18112 ST7L FAM4B|ST7R|STLR suppression of tumorigenicity 7 like protein-coding 561_WT_peak_2608 chr15 91381312 91381517 + 101 NA Intergenic Intergenic -30408 NM_002569 5045 Hs.513153 NM_002569 HPRD:00653 FURIN FUR|PACE|PCSK3|SPC1 furin (paired basic amino acid cleaving enzyme) protein-coding 561_WT_peak_234 chr1 52344777 52345110 + 101 NA promoter-TSS (NM_001101662) promoter-TSS (NM_001101662) -334 NM_001101662 4898 Hs.584782 NM_002525 HPRD:04036 NRD1 hNRD1|hNRD2 nardilysin (N-arginine dibasic convertase) protein-coding 561_WT_peak_2513 chr15 64752592 64752818 + 101 NA Intergenic CpG -38914 NM_015042 23060 Hs.595451 NM_015042 HPRD:18754 ZNF609 - zinc finger protein 609 protein-coding 561_WT_peak_413 chr1 120630583 120630801 + 101 NA Intergenic Intergenic -18375 NM_024408 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 561_WT_peak_5075 chr3 43431252 43431421 + 101 NA intron (NM_001204831, intron 11 of 12) intron (NM_001204831, intron 11 of 12) -37882 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 561_WT_peak_5976 chr5 145826425 145826756 + 101 NA promoter-TSS (NM_001040006) promoter-TSS (NM_001040006) -283 NM_001040006 10915 Hs.443465 NM_006706 HPRD:10393 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 561_WT_peak_1206 chr11 10480662 10481042 + 101 NA intron (NM_001025390, intron 1 of 14) intron (NM_001025390, intron 1 of 14) -1826 NM_001172430 272 Hs.501890 NM_000480 HPRD:00041 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 561_WT_peak_409 chr1 117602394 117602576 + 101 NA promoter-TSS (NM_003594) promoter-TSS (NM_003594) -373 NR_110786 101929099 Hs.559118 NR_110786 ENSG00000236137 LOC101929099 - uncharacterized LOC101929099 ncRNA 561_WT_peak_247 chr1 53879023 53879251 + 101 NA Intergenic Intergenic 26556 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1 pseudo 561_WT_peak_4486 chr2 230045454 230045625 + 101 NA intron (NM_001100818, intron 1 of 2) LSU-rRNA_Hsa|rRNA|rRNA 90518 NM_017933 55022 Hs.745038 NM_017933 HPRD:07944 PID1 NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 561_WT_peak_2017 chr13 42967313 42967657 + 101 NA Intergenic Intergenic 121196 NM_016248 11215 Hs.105105 NM_016248 HPRD:05261 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A kinase (PRKA) anchor protein 11 protein-coding 561_WT_peak_7051 chr8 71436140 71436408 + 101 NA Intergenic L2b|LINE|L2 52905 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 561_WT_peak_4146 chr2 74347397 74347744 + 101 NA Intergenic CpG 27469 NM_212552 388962 Hs.61472 NM_212552 HPRD:14209 BOLA3 MMDS2 bolA family member 3 protein-coding 561_WT_peak_2053 chr13 50655893 50656131 + 101 NA promoter-TSS (NR_002605) promoter-TSS (NR_002605) -293 NR_002605 10301 Hs.591229 NM_005887 HPRD:16150 DLEU1 BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6 deleted in lymphocytic leukemia 1 (non-protein coding) ncRNA 561_WT_peak_7250 chr9 35657712 35658079 + 101 NA promoter-TSS (NM_001195201) promoter-TSS (NM_001195201) 120 NR_003051 6023 Hs.587502 NR_003051 ENSG00000269900 RMRP CHH|NME1|RMRPR|RRP2 RNA component of mitochondrial RNA processing endoribonuclease ncRNA 561_WT_peak_2347 chr14 95623621 95624294 + 101 NA promoter-TSS (NR_015415) promoter-TSS (NR_015415) -68 NR_015415 400242 Hs.497573 NM_207443 HPRD:13502 DICER1-AS1 DICER1-AS DICER1 antisense RNA 1 ncRNA 561_WT_peak_1995 chr13 37574465 37574894 + 100 NA promoter-TSS (NM_181503) promoter-TSS (NM_181503) 1 NM_181503 11340 Hs.294041 NM_181503 HPRD:09351 EXOSC8 CIP3|EAP2|OIP2|RRP43|Rrp43p|bA421P11.3|p9 exosome component 8 protein-coding 561_WT_peak_3243 chr17 47866038 47866291 + 100 NA 5' UTR (NM_001199156, exon 1 of 13) 5' UTR (NM_001199156, exon 1 of 13) 183 NM_001199158 11143 Hs.21907 NM_007067 HPRD:07135 KAT7 HBO1|HBOA|MYST2|ZC2HC7 K(lysine) acetyltransferase 7 protein-coding 561_WT_peak_2495 chr15 57025256 57025491 + 100 NA intron (NM_001002843, intron 1 of 20) CpG 911 NM_017661 54816 Hs.511477 NM_017661 HPRD:15448 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 561_WT_peak_7622 chrX 148607006 148607434 + 100 NA Intergenic Intergenic 14092 NR_027455 100131434 Hs.669775 NM_001039766 LINC00893 - long intergenic non-protein coding RNA 893 ncRNA 561_WT_peak_3651 chr19 14260249 14260762 + 100 NA 3' UTR (NM_014921, exon 23 of 23) 3' UTR (NM_014921, exon 23 of 23) 12541 NR_045214 100507373 Hs.720437 NR_045214 ENSG00000267169 LOC100507373 - uncharacterized LOC100507373 ncRNA 561_WT_peak_7570 chrX 70288516 70288724 + 100 NA promoter-TSS (NM_001256187) promoter-TSS (NM_001256187) -322 NM_013346 29934 Hs.260750 NM_013346 HPRD:06719 SNX12 - sorting nexin 12 protein-coding 561_WT_peak_3864 chr19 50380359 50380647 + 100 NA promoter-TSS (NM_001168222) promoter-TSS (NM_001168222) 141 NM_001098632 84335 Hs.515542 NM_032375 HPRD:12441 AKT1S1 Lobe|PRAS40 AKT1 substrate 1 (proline-rich) protein-coding 561_WT_peak_2859 chr16 58060175 58060531 + 100 NA exon (NM_002428, exon 1 of 10) exon (NM_002428, exon 1 of 10) 1071 NM_002428 4324 Hs.80343 NM_002428 HPRD:03775 MMP15 MT2-MMP|MTMMP2|SMCP-2 matrix metallopeptidase 15 (membrane-inserted) protein-coding 561_WT_peak_7556 chrX 54209287 54209507 + 100 NA exon (NM_017848, exon 1 of 16) exon (NM_017848, exon 1 of 16) 294 NM_017848 54954 Hs.86045 NM_017848 HPRD:06480 FAM120C CXorf17|ORF34 family with sequence similarity 120C protein-coding 561_WT_peak_1613 chr12 12939673 12939896 + 100 NA intron (NM_030817, intron 1 of 1) CpG 1243 NM_030817 81575 Hs.23388 NM_030817 HPRD:13153 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 561_WT_peak_6737 chr7 77325342 77325555 + 100 NA promoter-TSS (NM_198467) promoter-TSS (NM_198467) -295 NM_198467 222194 Hs.72451 NM_198467 RSBN1L - round spermatid basic protein 1-like protein-coding 561_WT_peak_4663 chr20 47463066 47463215 + 100 NA Intergenic Intergenic -18720 NM_020820 57580 Hs.153310 NM_020820 HPRD:06066 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 561_WT_peak_3732 chr19 36249042 36249273 + 100 NA intron (NM_001039887, intron 1 of 11) CpG 113 NM_001039887 148137 Hs.527982 NM_144692 HPRD:14079 PROSER3 C19orf55 proline and serine rich 3 protein-coding 561_WT_peak_2340 chr14 93234566 93234895 + 100 NA Intergenic Intergenic -19683 NM_005606 5641 Hs.18069 NM_005606 HPRD:04017 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 561_WT_peak_6475 chr6 133135276 133135905 + 100 NA promoter-TSS (NM_001016) promoter-TSS (NM_001016) -118 NM_001016 6206 Hs.546289 NM_001016 RPS12 S12 ribosomal protein S12 protein-coding 561_WT_peak_1539 chr12 95315 95671 + 100 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat 7509 NR_028269 100288778 Hs.585931 NR_028269 LOC100288778 - WAS protein family homolog 1 pseudogene pseudo 561_WT_peak_7598 chrX 102941987 102942197 + 100 NA promoter-TSS (NM_001142430) promoter-TSS (NM_001142430) -120 NR_038978 340544 Hs.441076 NR_038978 MORF4L2-AS1 - MORF4L2 antisense RNA 1 ncRNA 561_WT_peak_4242 chr2 102875169 102875455 + 100 NA Intergenic Intergenic -52650 NM_001282408 9173 Hs.66 NM_003856 HPRD:03123 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor-like 1 protein-coding 561_WT_peak_2364 chr14 100751874 100752190 + 100 NA Intergenic CpG 8338 NR_106822 102466730 NR_106822 MIR6764 hsa-mir-6764 microRNA 6764 ncRNA 561_WT_peak_4310 chr2 135675680 135675951 + 100 NA promoter-TSS (NR_037649) promoter-TSS (NR_037649) 361 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 561_WT_peak_5711 chr5 41870211 41870666 + 100 NA exon (NM_000436, exon 1 of 17) exon (NM_000436, exon 1 of 17) 306 NR_046635 100874002 Hs.375537 NR_046635 OXCT1-AS1 - OXCT1 antisense RNA 1 ncRNA 561_WT_peak_7065 chr8 90778117 90778347 + 100 NA intron (NM_003821, intron 3 of 10) L1MD1|LINE|L1 8257 NM_003821 8767 Hs.103755 NM_003821 HPRD:04585 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor-interacting serine-threonine kinase 2 protein-coding 561_WT_peak_7090 chr8 101962641 101963136 + 100 NA promoter-TSS (NM_001135702) promoter-TSS (NM_001135702) -89 NM_001135702 7534 Hs.492407 NM_003406 HPRD:03183 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 561_WT_peak_6335 chr6 43597077 43597247 + 100 NA promoter-TSS (NM_019096) promoter-TSS (NM_019096) -117 NM_001003690 9587 Hs.122346 NM_014628 HPRD:10065 MAD2L1BP CMT2 MAD2L1 binding protein protein-coding 561_WT_peak_7525 chrX 40943920 40944471 + 100 NA promoter-TSS (NM_001039590) promoter-TSS (NM_001039590) -693 NM_001039590 8239 Hs.77578 NM_004652 HPRD:02091 USP9X DFFRX|FAF|FAM|MRX99 ubiquitin specific peptidase 9, X-linked protein-coding 561_WT_peak_7517 chrX 24497883 24498208 + 100 NA intron (NM_001142386, intron 1 of 11) MIRb|SINE|MIR 14701 NM_005391 5165 Hs.296031 NM_005391 HPRD:03956 PDK3 CMTX6|GS1-358P8.4 pyruvate dehydrogenase kinase, isozyme 3 protein-coding 561_WT_peak_5416 chr4 10673019 10673213 + 100 NA intron (NM_052964, intron 1 of 18) intron (NM_052964, intron 1 of 18) 13270 NM_052964 116449 Hs.678910 NM_052964 CLNK MIST cytokine-dependent hematopoietic cell linker protein-coding 561_WT_peak_5124 chr3 52740144 52740357 + 100 NA promoter-TSS (NM_001278281) promoter-TSS (NM_001278281) -151 NM_018446 55830 Hs.297304 NM_018446 HPRD:12423 GLT8D1 MSTP139 glycosyltransferase 8 domain containing 1 protein-coding 561_WT_peak_5524 chr4 83955726 83956222 + 100 NA promoter-TSS (NM_001258006) promoter-TSS (NM_001258006) -265 NM_016129 51138 Hs.190384 NM_016129 HPRD:09888 COPS4 CSN4 COP9 signalosome subunit 4 protein-coding 561_WT_peak_2172 chr14 35591032 35591994 + 100 NA promoter-TSS (NM_017917) promoter-TSS (NM_017917) 6 NM_017917 55012 Hs.530712 NM_017917 HPRD:12622 PPP2R3C C14orf10|G4-1|G5pr protein phosphatase 2, regulatory subunit B'', gamma protein-coding 561_WT_peak_986 chr10 46815228 46815542 + 100 NA Intergenic Intergenic -52493 NR_003611 399761 Hs.571994 NM_001040053 ENSG00000204164 BMS1P5 BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3 BMS1 pseudogene 5 pseudo 561_WT_peak_5558 chr4 99916256 99916485 + 100 NA promoter-TSS (NM_015143) promoter-TSS (NM_015143) -418 NM_015143 23173 Hs.480364 NM_015143 HPRD:10071 METAP1 MAP1A|MetAP1A methionyl aminopeptidase 1 protein-coding 561_WT_peak_5717 chr5 42993164 42993804 + 100 NA promoter-TSS (NR_104643) promoter-TSS (NR_104643) -49 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 561_WT_peak_3833 chr19 49013846 49014077 + 100 NA intron (NM_001080434, intron 2 of 15) intron (NM_001080434, intron 2 of 15) 2485 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 561_WT_peak_5418 chr4 13485605 13485941 + 100 NA exon (NM_001159601, exon 1 of 8) exon (NM_001159601, exon 1 of 8) 216 NM_004249 9364 Hs.656060 NM_004249 HPRD:06699 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 561_WT_peak_5014 chr3 14220220 14220593 + 100 NA promoter-TSS (NM_004628) promoter-TSS (NM_004628) 178 NM_014463 27258 Hs.111632 NM_014463 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 561_WT_peak_7196 chr9 10067 10287 + 100 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -1810 NR_051986 100287596 Hs.719844 NR_051986 DDX11L5 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5 pseudo 561_WT_peak_6171 chr6 26328306 26328476 + 100 NA Intergenic tRNA-Arg-CGY_|tRNA|tRNA -36996 NM_001197249 11118 Hs.376046 NM_007047 HPRD:12547 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin, subfamily 3, member A2 protein-coding 561_WT_peak_956 chr10 38383548 38383772 + 100 NA intron (NM_003421, intron 1 of 6) CpG 396 NM_001007094 7587 Hs.292575 NM_003421 HPRD:18508 ZNF37A KOX21|ZNF37 zinc finger protein 37A protein-coding 561_WT_peak_2304 chr14 77428132 77428361 + 100 NA Intergenic Intergenic 66796 NM_024496 64207 Hs.179260 NM_024496 HPRD:10713 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein-like protein-coding 561_WT_peak_3574 chr19 3035843 3036029 + 100 NA intron (NM_001144761, intron 2 of 19) intron (NM_001144761, intron 2 of 19) -6324 NM_001144762 7089 Hs.332173 NM_003260 HPRD:03025 TLE2 ESG|ESG2|GRG2 transducin-like enhancer of split 2 protein-coding 561_WT_peak_1107 chr10 97803329 97803627 + 100 NA intron (NM_019084, intron 1 of 5) CpG 319 NM_019084 54619 Hs.596479 NM_019084 HPRD:07710 CCNJ bA690P14.1 cyclin J protein-coding 561_WT_peak_3965 chr2 11244208 11244565 + 100 NA intron (NR_040080, intron 8 of 8) intron (NR_040080, intron 8 of 8) 27916 NR_040080 285150 Hs.329841 NM_182586 HPRD:08158 FLJ33534 - uncharacterized LOC285150 ncRNA 561_WT_peak_1420 chr11 76494480 76494759 + 100 NA promoter-TSS (NR_120561) promoter-TSS (NR_120561) 334 NM_015516 25987 Hs.8361 NM_015516 HPRD:12152 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 561_WT_peak_3438 chr18 12883701 12884175 + 100 NA intron (NM_001207013, intron 1 of 10) CpG 396 NM_080423 5771 Hs.654527 NM_002828 HPRD:06768 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase, non-receptor type 2 protein-coding 561_WT_peak_5529 chr4 84138879 84139306 + 99 NA Intergenic Intergenic 66975 NM_015697 27235 Hs.144304 NM_015697 HPRD:13062 COQ2 CL640|COQ10D1|MSA1 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase protein-coding 561_WT_peak_6957 chr8 28918595 28918827 + 99 NA Intergenic Intergenic 170486 NM_024567 79618 Hs.563560 NM_024567 HPRD:07964 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 561_WT_peak_1731 chr12 57081886 57082107 + 99 NA promoter-TSS (NR_104219) promoter-TSS (NR_104219) 196 NM_001282604 10728 Hs.50425 NM_006601 HPRD:06138 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 (cytosolic) protein-coding 561_WT_peak_5456 chr4 40201605 40202349 + 99 NA intron (NM_001278363, intron 1 of 2) MER5B|DNA|hAT-Charlie 3450 NM_001278363 399 Hs.654594 NM_004310 RHOH ARHH|TTF ras homolog family member H protein-coding 561_WT_peak_3743 chr19 37263676 37263881 + 99 NA promoter-TSS (NM_001267779) promoter-TSS (NM_001267779) -62 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 561_WT_peak_4293 chr2 128848510 128848596 + 99 NA promoter-TSS (NM_020120) promoter-TSS (NM_020120) -201 NM_020120 56886 Hs.743306 NM_020120 HPRD:12064 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 561_WT_peak_4080 chr2 58273696 58274619 + 99 NA intron (NM_001288839, intron 1 of 11) CpG 310 NM_001130481 7444 Hs.715298 NM_006296 HPRD:03702 VRK2 - vaccinia related kinase 2 protein-coding 561_WT_peak_3961 chr2 10587948 10588333 + 99 NA promoter-TSS (NM_001287190) promoter-TSS (NM_001287190) -215 NM_001287190 4953 Hs.467701 NM_002539 HPRD:01324 ODC1 ODC ornithine decarboxylase 1 protein-coding 561_WT_peak_4763 chr21 32505161 32505495 + 99 NA intron (NM_003253, intron 24 of 28) intron (NM_003253, intron 24 of 28) -94533 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 561_WT_peak_4361 chr2 170655478 170655781 + 99 NA promoter-TSS (NM_001294145) promoter-TSS (NM_001294145) 91 NM_001294145 6741 Hs.632535 NM_003142 HPRD:00168 SSB LARP3|La|La/SSB Sjogren syndrome antigen B (autoantigen La) protein-coding 561_WT_peak_5804 chr5 71616206 71616392 + 99 NA promoter-TSS (NM_001286751) promoter-TSS (NM_001286751) 105 NM_001284404 79810 Hs.126906 NM_024754 HPRD:15193 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 561_WT_peak_1996 chr13 37574971 37575236 + 99 NA intron (NM_181503, intron 1 of 10) CpG 425 NM_181503 11340 Hs.294041 NM_181503 HPRD:09351 EXOSC8 CIP3|EAP2|OIP2|RRP43|Rrp43p|bA421P11.3|p9 exosome component 8 protein-coding 561_WT_peak_4732 chr20 62886674 62886947 + 99 NA promoter-TSS (NM_001104925) promoter-TSS (NM_001104925) -238 NM_018257 55251 Hs.744845 NM_018257 HPRD:12764 PCMTD2 C20orf36 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 protein-coding 561_WT_peak_3977 chr2 20101637 20102128 + 99 NA promoter-TSS (NM_001008237) promoter-TSS (NM_001008237) -138 NM_001008237 130502 Hs.591547 NM_001008237 HPRD:17296 TTC32 - tetratricopeptide repeat domain 32 protein-coding 561_WT_peak_3530 chr18 72045500 72045696 + 99 NA Intergenic Intergenic 62488 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 561_WT_peak_6644 chr7 38272543 38272762 + 99 NA Intergenic Intergenic 40596 NM_001003806 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2 TCR gamma alternate reading frame protein protein-coding 561_WT_peak_464 chr1 147774740 147775005 + 99 NA intron (NR_102404, intron 17 of 18).2 tRNA-His-CAY_|tRNA|tRNA 31806 NR_049810 100847044 NR_049810 MIR5087 - microRNA 5087 ncRNA 561_WT_peak_5557 chr4 99850006 99850563 + 99 NA promoter-TSS (NM_001130678) promoter-TSS (NM_001130678) -41 NM_001130678 1977 Hs.249718 NM_001968 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F eukaryotic translation initiation factor 4E protein-coding 561_WT_peak_930 chr10 28822561 28822875 + 99 NA intron (NM_100486, intron 1 of 12) CpG 297 NM_100486 51322 Hs.743224 NM_016628 HPRD:18291 WAC BM-016|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 561_WT_peak_5488 chr4 54232349 54232629 + 99 NA promoter-TSS (NM_152540) promoter-TSS (NM_152540) -247 NM_152540 152579 Hs.302287 NM_152540 HPRD:15300 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 561_WT_peak_5697 chr5 39177156 39177447 + 99 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 42379 NM_199335 2533 Hs.370503 NM_001465 HPRD:04107 FYB ADAP|PRO0823|SLAP-130 FYN binding protein protein-coding 561_WT_peak_4778 chr21 35320011 35320365 + 99 NA intron (NR_038883, intron 2 of 2) intron (NR_038883, intron 2 of 2) -1042 NM_001288961 400863 Hs.729814 NM_207472 LOC400863 - uncharactered LOC400863 protein-coding 561_WT_peak_5449 chr4 39355109 39355291 + 99 NA intron (NM_002913, intron 1 of 24) intron (NM_002913, intron 1 of 24) 12801 NM_001204747 5981 Hs.507475 NM_002913 HPRD:00024 RFC1 A1|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C (activator 1) 1, 145kDa protein-coding 561_WT_peak_5349 chr3 186545067 186545290 + 99 NA Intergenic CpG -1868 NR_125409 102724699 Hs.518476 NR_125409 LOC102724699 - uncharacterized LOC102724699 ncRNA 561_WT_peak_4746 chr21 15906357 15906626 + 99 NA intron (NM_001286523, intron 1 of 8) intron (NM_001286523, intron 1 of 8) 12190 NM_001286523 64092 Hs.473341 NM_022136 HPRD:06413 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 561_WT_peak_5890 chr5 126112209 126112583 + 99 NA promoter-TSS (NM_001198557) promoter-TSS (NM_001198557) 81 NM_005573 4001 Hs.89497 NM_005573 HPRD:01036 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 561_WT_peak_4178 chr2 86426574 86426879 + 99 NA intron (NM_016622, intron 1 of 3) intron (NM_016622, intron 1 of 3) 170 NM_016622 51318 Hs.433439 NM_016622 HPRD:14755 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 561_WT_peak_3313 chr17 64188432 64188703 + 99 NA promoter-TSS (NM_001199165) promoter-TSS (NM_001199165) -355 NM_001199165 201134 Hs.408676 NM_145036 HPRD:11336 CEP112 CCDC46|MACOCO centrosomal protein 112kDa protein-coding 561_WT_peak_3375 chr17 78428230 78428753 + 99 NA Intergenic CpG 21913 NM_002522 4884 Hs.514556 NM_002522 HPRD:03843 NPTX1 NP1 neuronal pentraxin I protein-coding 561_WT_peak_3705 chr19 24184391 24184732 + 99 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -31646 NM_001278661 9534 Hs.434406 NM_004876 HPRD:05304 ZNF254 BMZF-5|HD-ZNF1|ZNF539|ZNF91L zinc finger protein 254 protein-coding 561_WT_peak_6527 chr6 157342305 157342625 + 99 NA intron (NM_020732, intron 5 of 19) CpG -241600 NR_039676 100616154 NR_039676 miRBase:MI0016817 MIR4466 - microRNA 4466 ncRNA 561_WT_peak_181 chr1 36689455 36689673 + 99 NA promoter-TSS (NM_005119) promoter-TSS (NM_005119) -453 NM_005119 9967 Hs.744057 NM_005119 HPRD:07543 THRAP3 TRAP150 thyroid hormone receptor associated protein 3 protein-coding 561_WT_peak_4380 chr2 178417178 178417542 + 99 NA exon (NM_152517, exon 1 of 1) exon (NM_152517, exon 1 of 1) 164 NM_152517 150737 Hs.447659 NM_152517 TTC30B IFT70|fleer tetratricopeptide repeat domain 30B protein-coding 561_WT_peak_1444 chr11 85887723 85887955 + 99 NA Intergenic MIRc|SINE|MIR -67967 NM_152991 8726 Hs.503510 NM_003797 HPRD:09343 EED HEED|WAIT1 embryonic ectoderm development protein-coding 561_WT_peak_2761 chr16 29086283 29086493 + 98 NA non-coding (NR_003369, exon 1 of 17) non-coding (NR_003369, exon 1 of 17) 225 NR_003369 653390 Hs.720348 NR_003369 ENSG00000103472 RRN3P2 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 pseudo 561_WT_peak_1435 chr11 82904826 82905168 + 98 NA non-coding (NR_125355, exon 1 of 6) non-coding (NR_125355, exon 1 of 6) 216 NR_125355 338699 Hs.503438 NM_182603 HPRD:08230 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 561_WT_peak_7187 chr8 145149846 145150195 + 98 NA promoter-TSS (NM_001916) promoter-TSS (NM_001916) 82 NM_001916 1537 Hs.289271 NM_001916 HPRD:00480 CYC1 MC3DN6|UQCR4 cytochrome c-1 protein-coding 561_WT_peak_1397 chr11 68228223 68228402 + 98 NA intron (NM_001164161, intron 1 of 23) CpG 126 NM_018312 55291 Hs.503022 NM_018312 HPRD:10703 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6, regulatory subunit 3 protein-coding 561_WT_peak_1639 chr12 29533871 29534196 + 98 NA intron (NM_016570, intron 1 of 13) intron (NM_016570, intron 1 of 13) 110 NM_016570 51290 Hs.339453 NM_016570 ERGIC2 Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 561_WT_peak_5200 chr3 110957841 110958092 + 98 NA Intergenic MIRc|SINE|MIR 166951 NM_001243288 25945 Hs.293917 NM_015480 PVRL3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRR3 poliovirus receptor-related 3 protein-coding 561_WT_peak_250 chr1 54665894 54666126 + 98 NA promoter-TSS (NM_001031672) promoter-TSS (NM_001031672) 170 NM_016491 51253 Hs.584908 NM_016491 HPRD:14757 MRPL37 L37mt|MRP-L2|MRP-L37|MRPL2|RPML2 mitochondrial ribosomal protein L37 protein-coding 561_WT_peak_5843 chr5 85913683 85914042 + 98 NA promoter-TSS (NM_001867) promoter-TSS (NM_001867) 78 NM_001867 1350 Hs.430075 NM_001867 COX7C - cytochrome c oxidase subunit VIIc protein-coding 561_WT_peak_1116 chr10 102027056 102027263 + 98 NA intron (NM_018294, intron 1 of 13) CpG 278 NM_018294 55280 Hs.215502 NM_018294 HPRD:13101 CWF19L1 - CWF19-like 1, cell cycle control (S. pombe) protein-coding 561_WT_peak_6028 chr5 175322643 175322865 + 98 NA Intergenic Intergenic 24253 NM_001008220 10814 Hs.193235 NM_006650 HPRD:09234 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 561_WT_peak_3355 chr17 74511567 74511804 + 98 NA Intergenic Intergenic -11983 NR_033357 768206 Hs.634380 NM_001077620 PRCD RP36 progressive rod-cone degeneration protein-coding 561_WT_peak_6438 chr6 111804558 111805023 + 98 NA non-coding (NR_034111, exon 1 of 4) non-coding (NR_034111, exon 1 of 4) 115 NR_034108 643749 Hs.486228 NR_034108 ENSG00000231889 TRAF3IP2-AS1 C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 TRAF3IP2 antisense RNA 1 ncRNA 561_WT_peak_3431 chr18 9475224 9475428 + 98 NA promoter-TSS (NM_006788) promoter-TSS (NM_006788) -204 NM_006788 10928 Hs.528993 NM_006788 HPRD:09013 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 561_WT_peak_2175 chr14 35873729 35874202 + 98 NA promoter-TSS (NM_020529) promoter-TSS (NM_020529) -5 NM_020529 4792 Hs.81328 NM_020529 HPRD:01235 NFKBIA IKBA|MAD-3|NFKBI nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha protein-coding 561_WT_peak_1373 chr11 65686761 65686950 + 98 NA promoter-TSS (NM_001135635) promoter-TSS (NM_001135635) 127 NM_006442 10589 Hs.356742 NM_006442 HPRD:03796 DRAP1 NC2-alpha DR1-associated protein 1 (negative cofactor 2 alpha) protein-coding 561_WT_peak_7222 chr9 19184203 19184436 + 98 NA Intergenic Intergenic -46444 NR_073201 55667 Hs.249591 NM_017925 HPRD:12927 DENND4C C9orf55|C9orf55B|bA513M16.3 DENN/MADD domain containing 4C protein-coding 561_WT_peak_3828 chr19 48825020 48825514 + 98 NA Intergenic CpG -1935 NM_144577 93233 Hs.112645 NM_144577 HPRD:08149 CCDC114 CILD20 coiled-coil domain containing 114 protein-coding 561_WT_peak_7389 chr9 112736663 112736841 + 98 NA intron (NM_007203, intron 6 of 10) intron (NM_007203, intron 6 of 10) -74126 NM_001004065 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 561_WT_peak_1064 chr10 76969527 76969782 + 98 NA promoter-TSS (NM_003375) promoter-TSS (NM_003375) -258 NM_001184823 7417 Hs.355927 NM_003375 HPRD:01904 VDAC2 POR voltage-dependent anion channel 2 protein-coding 561_WT_peak_6160 chr6 26249785 26250895 + 98 NA TTS (NM_021018) TTS (NM_021018) 495 NM_021018 8968 Hs.247814 NM_021018 HPRD:11910 HIST1H3F H3/i|H3FI histone cluster 1, H3f protein-coding 561_WT_peak_1033 chr10 70939536 70939727 + 98 NA promoter-TSS (NM_003171) promoter-TSS (NM_003171) -362 NM_003171 6832 Hs.106469 NM_003171 HPRD:05493 SUPV3L1 SUV3 suppressor of var1, 3-like 1 (S. cerevisiae) protein-coding 561_WT_peak_5606 chr4 143328234 143328694 + 98 NA intron (NM_001101669, intron 5 of 25) intron (NM_001101669, intron 5 of 25) 439140 NM_003866 8821 Hs.531403 NM_003866 HPRD:06322 INPP4B - inositol polyphosphate-4-phosphatase, type II, 105kDa protein-coding 561_WT_peak_3515 chr18 57567289 57567739 + 98 NA intron (NM_021127, intron 1 of 1) CpG 322 NM_021127 5366 Hs.96 NM_021127 HPRD:12002 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 561_WT_peak_2592 chr15 89182036 89182423 + 98 NA 5' UTR (NM_002201, exon 1 of 4) 5' UTR (NM_002201, exon 1 of 4) 190 NM_002201 3669 Hs.459265 NM_002201 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20kDa protein-coding 561_WT_peak_5092 chr3 47822678 47822951 + 98 NA intron (NM_003074, intron 1 of 27) intron (NM_003074, intron 1 of 27) 591 NM_003074 6599 Hs.476179 NM_003074 HPRD:03435 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 protein-coding 561_WT_peak_3857 chr19 50003859 50004076 + 98 NA TTS (NM_001015) TTS (NM_001015) 158 NR_029703 406942 NR_029703 miRBase:MI0000479 MIR150 MIRN150|miRNA150 microRNA 150 ncRNA 561_WT_peak_1048 chr10 75173429 75173754 + 98 NA intron (NM_001156, intron 1 of 12) CpG 250 NM_004034 310 Hs.631827 NM_001156 HPRD:01720 ANXA7 ANX7|SNX|SYNEXIN annexin A7 protein-coding 561_WT_peak_1327 chr11 63302424 63302604 + 98 NA intron (NR_049833, intron 1 of 3) intron (NR_049833, intron 1 of 3) -1759 NM_004585 5920 Hs.17466 NM_004585 HPRD:05479 RARRES3 HRASLS4|HRSL4|PLA1/2-3|RIG1|TIG3 retinoic acid receptor responder (tazarotene induced) 3 protein-coding 561_WT_peak_5623 chr4 153457566 153458069 + 98 NA TTS (NR_039658) TTS (NR_039658) 237 NR_039658 100616193 NR_039658 miRBase:MI0016799 MIR4453 - microRNA 4453 ncRNA 561_WT_peak_6488 chr6 137355107 137355349 + 98 NA intron (NM_014432, intron 1 of 6) intron (NM_014432, intron 1 of 6) 10221 NM_001278722 53832 Hs.445868 NM_014432 HPRD:05729 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor, alpha protein-coding 561_WT_peak_6172 chr6 26330441 26330740 + 98 NA Intergenic tRNA-Met-i|tRNA|tRNA -34797 NM_001197249 11118 Hs.376046 NM_007047 HPRD:12547 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin, subfamily 3, member A2 protein-coding 561_WT_peak_564 chr1 156698299 156698567 + 98 NA promoter-TSS (NM_030980) promoter-TSS (NM_030980) 170 NM_001142560 51093 Hs.512597 NM_015997 HPRD:10824 RRNAD1 C1orf66|CGI-41 ribosomal RNA adenine dimethylase domain containing 1 protein-coding 561_WT_peak_1860 chr12 112123985 112124229 + 98 NA promoter-TSS (NM_006768) promoter-TSS (NM_006768) 250 NM_001136538 80724 Hs.331141 NM_025247 HPRD:10625 ACAD10 - acyl-CoA dehydrogenase family, member 10 protein-coding 561_WT_peak_6661 chr7 44835779 44836081 + 98 NA promoter-TSS (NM_001300981) promoter-TSS (NM_001300981) -305 NM_021130 5478 Hs.356331 NM_021130 HPRD:00457 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A (cyclophilin A) protein-coding 561_WT_peak_7310 chr9 77767346 77767608 + 98 NA Intergenic Intergenic 64079 NM_012383 26578 Hs.494192 NM_012383 HPRD:17808 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 561_WT_peak_1505 chr11 118965699 118966138 + 98 NA exon (NM_002105, exon 1 of 1) exon (NM_002105, exon 1 of 1) 259 NM_002105 3014 Hs.477879 NM_002105 HPRD:03465 H2AFX H2A.X|H2A/X|H2AX H2A histone family, member X protein-coding 561_WT_peak_3344 chr17 73775113 73775878 + 97 NA intron (NM_005324, intron 1 of 3) CpG-11127 365 NM_005324 3021 Hs.180877 NM_005324 HPRD:03036 H3F3B H3.3B H3 histone, family 3B (H3.3B) protein-coding 561_WT_peak_3784 chr19 43943708 43943892 + 97 NA Intergenic Intergenic 24765 NM_001130011 83639 Hs.97978 NM_031451 HPRD:15490 TEX101 CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP testis expressed 101 protein-coding 561_WT_peak_6430 chr6 109702928 109703705 + 97 NA intron (NM_001142404, intron 1 of 5) CpG 446 NM_001142402 8763 Hs.520313 NM_006016 HPRD:04523 CD164 MGC-24|MUC-24|endolyn CD164 molecule, sialomucin protein-coding 561_WT_peak_7484 chr9 139377274 139377510 + 97 NA promoter-TSS (NM_152571) promoter-TSS (NM_152571) 115 NM_014866 9919 Hs.522500 NM_014866 ENSG00000148396 SEC16A KIAA0310|SEC16L|p250 SEC16 homolog A (S. cerevisiae) protein-coding 561_WT_peak_2055 chr13 50699846 50700258 + 97 NA promoter-TSS (NR_002612) promoter-TSS (NR_002612) -375 NR_002612 8847 Hs.547964 NR_002612 DLEU2 1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 (non-protein coding) ncRNA 561_WT_peak_6691 chr7 66309450 66309805 + 97 NA intron (NR_003934, intron 1 of 10) CpG 186 NR_003934 729156 Hs.709878 NR_003934 ENSG00000230583 GTF2IRD1P1 - GTF2I repeat domain containing 1 pseusogene 1 pseudo 561_WT_peak_1425-2 chr11 78036539 78036762 + 97 NA intron (NM_080491, intron 1 of 9) L3|LINE|CR1 16276 NM_012296 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 561_WT_peak_6727 chr7 75508253 75508515 + 97 NA promoter-TSS (NM_001040456) promoter-TSS (NM_001040456) 67 NM_001040457 57414 Hs.488827 NM_020684 HPRD:11492 RHBDD2 NPD007|RHBDL7 rhomboid domain containing 2 protein-coding 561_WT_peak_3042 chr17 8286307 8286666 + 97 NA promoter-TSS (NM_000987) promoter-TSS (NM_000987) 79 NM_000987 6154 Hs.482144 NM_000987 HPRD:04746 RPL26 DBA11|L26 ribosomal protein L26 protein-coding 561_WT_peak_4705 chr20 56884883 56885058 + 97 NA promoter-TSS (NR_003505) promoter-TSS (NR_003505) 199 NM_020673 57403 Hs.529044 NM_020673 HPRD:06696 RAB22A - RAB22A, member RAS oncogene family protein-coding 561_WT_peak_7079 chr8 99057454 99057712 + 97 NA exon (NM_000989, exon 2 of 5) exon (NM_000989, exon 2 of 5) 235 NM_000989 6156 Hs.400295 NM_000989 HPRD:01595 RPL30 L30 ribosomal protein L30 protein-coding 561_WT_peak_216 chr1 45279483 45279746 + 97 NA 3' UTR (NM_001136537, exon 8 of 8) 3' UTR (NM_001136537, exon 8 of 8) 5460 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB (POZ) domain containing 19 protein-coding 561_WT_peak_2786 chr16 30645384 30645734 + 97 NA Intergenic Intergenic -16682 NM_024031 78994 Hs.293629 NM_024031 HPRD:14541 PRR14 - proline rich 14 protein-coding 561_WT_peak_3324 chr17 66287274 66287500 + 97 NA promoter-TSS (NM_001174166) promoter-TSS (NM_001174166) 18 NM_004694 9120 Hs.42645 NM_004694 HPRD:04857 SLC16A6 MCT6|MCT7 solute carrier family 16, member 6 protein-coding 561_WT_peak_6175 chr6 26520682 26520963 + 97 NA Intergenic Intergenic -1112 NR_026790 493812 Hs.272939 NR_026790 ENSG00000228223 HCG11 bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 561_WT_peak_6572 chr7 2001548 2001854 + 97 NA intron (NM_001013836, intron 15 of 18) THE1A|LTR|ERVL-MaLR -117812 NR_039799 100616160 NR_039799 MIR4655 - microRNA 4655 ncRNA 561_WT_peak_6889 chr7 148823190 148823650 + 97 NA promoter-TSS (NM_020781) promoter-TSS (NM_020781) 18 NM_001001661 155054 Hs.31743 NM_001001661 HPRD:11715 ZNF425 - zinc finger protein 425 protein-coding 561_WT_peak_6629 chr7 26904486 26904686 + 97 NA promoter-TSS (NM_003930) promoter-TSS (NM_003930) -245 NM_003930 8935 Hs.200770 NM_003930 HPRD:05558 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 561_WT_peak_424 chr1 143765798 143766046 + 97 NA Intergenic MLT1N2|LTR|ERVL-MaLR 1959 NM_001123068 644591 Hs.534674 NM_001123068 ENSG00000236334 PPIAL4G COAS-2 peptidylprolyl isomerase A (cyclophilin A)-like 4G protein-coding 561_WT_peak_6705 chr7 72425233 72425446 + 97 NA promoter-TSS (NR_033323) promoter-TSS (NR_033323) -37 NR_033323 260294 Hs.510927 NM_148936 HPRD:15657 NSUN5P2 NOL1R2|NSUN5C|WBSCR20B|WBSCR20C NOP2/Sun domain family, member 5 pseudogene 2 pseudo 561_WT_peak_2424 chr15 35837986 35838228 + 97 NA promoter-TSS (NR_038251) promoter-TSS (NR_038251) -289 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-AS1 ATPBD4-AS1 DPH6 antisense RNA 1 (head to head) ncRNA 561_WT_peak_543 chr1 154909841 154910263 + 97 NA promoter-TSS (NM_006556) promoter-TSS (NM_006556) -568 NM_006556 10654 Hs.30954 NM_006556 HPRD:07404 PMVK HUMPMKI|PMK|PMKA|PMKASE phosphomevalonate kinase protein-coding 561_WT_peak_1018 chr10 69372765 69373037 + 97 NA intron (NM_001291133, intron 3 of 8) intron (NM_001291133, intron 3 of 8) 52542 NM_001127384 29119 Hs.21375 NM_013266 HPRD:09639 CTNNA3 ARVD13|VR22 catenin (cadherin-associated protein), alpha 3 protein-coding 561_WT_peak_1425 chr11 78036279 78036453 + 97 NA intron (NM_080491, intron 1 of 9) MER117|DNA|hAT-Charlie 16560 NM_012296 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 561_WT_peak_3697 chr19 19932139 19932591 + 97 NA intron (NM_001145404, intron 1 of 2) intron (NM_001145404, intron 1 of 2) 195 NM_001145404 440515 Hs.351906 NM_001099269 ZNF506 - zinc finger protein 506 protein-coding 561_WT_peak_5723 chr5 43041818 43041953 + 97 NA promoter-TSS (NR_015447) promoter-TSS (NR_015447) -351 NR_015447 153684 Hs.259625 NR_015447 HPRD:14101 LOC153684 - uncharacterized LOC153684 ncRNA 561_WT_peak_6237 chr6 28367305 28367750 + 97 NA promoter-TSS (NM_001163391) promoter-TSS (NM_001163391) 17 NR_028077 9753 Hs.134816 NM_014724 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 561_WT_peak_5746 chr5 53906335 53906645 + 97 NA Intergenic Intergenic 92662 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 561_WT_peak_6974 chr8 37593871 37594456 + 97 NA promoter-TSS (NM_007175) promoter-TSS (NM_007175) -34 NM_001003790 11160 Hs.705490 NM_007175 HPRD:15437 ERLIN2 C8orf2|Erlin-2|NET32|SPFH2|SPG18 ER lipid raft associated 2 protein-coding 561_WT_peak_4800 chr21 40555926 40556021 + 97 NA promoter-TSS (NM_003720) promoter-TSS (NM_003720) -533 NM_001261824 8624 Hs.473838 NM_003720 HPRD:05598 PSMG1 C21LRP|DSCR2|LRPC21|PAC-1|PAC1 proteasome (prosome, macropain) assembly chaperone 1 protein-coding 561_WT_peak_1761 chr12 69753511 69753912 + 97 NA 5' UTR (NM_006530, exon 1 of 7) 5' UTR (NM_006530, exon 1 of 7) 221 NM_006530 8089 Hs.4029 NM_006530 HPRD:03666 YEATS4 4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9 YEATS domain containing 4 protein-coding 561_WT_peak_6157 chr6 26224326 26224823 + 97 NA promoter-TSS (NM_003532) promoter-TSS (NM_003532) -809 NM_003532 8353 Hs.443021 NM_003532 HPRD:11907 HIST1H3E H3.1|H3/d|H3FD histone cluster 1, H3e protein-coding 561_WT_peak_6397 chr6 90984257 90984368 + 97 NA intron (NM_021813, intron 1 of 8) intron (NM_021813, intron 1 of 8) 22315 NM_021813 60468 Hs.269764 NM_021813 HPRD:12012 BACH2 BTBD25 BTB and CNC homology 1, basic leucine zipper transcription factor 2 protein-coding 561_WT_peak_7391 chr9 114245424 114245612 + 97 NA intron (NM_001080398, intron 3 of 50) CpG 1507 NM_001080398 23392 Hs.368255 NM_001080398 ENSG00000136813 KIAA0368 ECM29 KIAA0368 protein-coding 561_WT_peak_227 chr1 46768588 46769074 + 97 NA promoter-TSS (NM_001297566) promoter-TSS (NM_001297566) 207 NM_006369 10489 Hs.144941 NM_006369 HPRD:10102 LRRC41 MUF1 leucine rich repeat containing 41 protein-coding 561_WT_peak_475 chr1 148598717 148598974 + 97 NA intron (NR_104217, intron 2 of 17) CpG 37998 NM_173638 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 561_WT_peak_2558 chr15 75660493 75660925 + 97 NA intron (NM_006715, intron 1 of 25) CpG-8102 259 NM_001256496 4123 Hs.26232 NM_006715 HPRD:01109 MAN2C1 MAN6A8|MANA|MANA1 mannosidase, alpha, class 2C, member 1 protein-coding 561_WT_peak_4845 chr22 21336116 21336379 + 97 NA promoter-TSS (NM_006767) promoter-TSS (NM_006767) -311 NM_006767 8216 Hs.78788 NM_006767 HPRD:08992 LZTR1 BTBD29|LZTR-1|SWNTS2 leucine-zipper-like transcription regulator 1 protein-coding 561_WT_peak_572 chr1 159796318 159796615 + 97 NA promoter-TSS (NM_020125) promoter-TSS (NM_020125) -13 NM_020125 56833 Hs.438683 NM_020125 HPRD:09429 SLAMF8 BLAME|CD353|SBBI42 SLAM family member 8 protein-coding 561_WT_peak_6885 chr7 148680720 148680943 + 97 NA Intergenic Intergenic 44951 NM_004911 9601 Hs.93659 NM_004911 HPRD:06501 PDIA4 ERP70|ERP72|ERp-72 protein disulfide isomerase family A, member 4 protein-coding 561_WT_peak_1889 chr12 121530577 121530845 + 97 NA Intergenic LTR12C|LTR|ERV1 -39911 NR_033953 5027 Hs.729169 NM_002562 HPRD:03977 P2RX7 P2X7 purinergic receptor P2X, ligand-gated ion channel, 7 protein-coding 561_WT_peak_2743 chr16 25060493 25060908 + 97 NA Intergenic AluSz6|SINE|Alu 17638 NR_038379 554206 Hs.552959 NR_038379 LOC554206 - leucine carboxyl methyltransferase 1 pseudogene pseudo 561_WT_peak_1151 chr10 116301062 116301284 + 96 NA intron (NM_001003407, intron 6 of 21) intron (NM_001003407, intron 6 of 21) -14488 NM_006720 3983 Hs.438236 NM_002313 HPRD:03819 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 561_WT_peak_2920 chr16 80613973 80614493 + 96 NA Intergenic Intergenic -7528 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 561_WT_peak_383 chr1 112146576 112146865 + 96 NA intron (NR_034126, intron 3 of 4) intron (NR_034126, intron 3 of 4) 4220 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 561_WT_peak_347 chr1 104068478 104068941 + 96 NA promoter-TSS (NM_001286997) promoter-TSS (NM_001286997) 131 NM_017619 55599 Hs.632423 NM_017619 HPRD:15267 RNPC3 RBM40|RNP|SNRNP65 RNA-binding region (RNP1, RRM) containing 3 protein-coding 561_WT_peak_3436 chr18 11908482 11908808 + 96 NA non-coding (NR_040242, exon 1 of 13) non-coding (NR_040242, exon 1 of 13) 151 NM_001242904 65258 Hs.712666 NM_023075 HPRD:14734 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 561_WT_peak_6292 chr6 33151199 33151452 + 96 NA intron (NM_080679, intron 5 of 62).2 intron (NM_080679, intron 5 of 62).2 8920 NM_080680 1302 Hs.390171 NM_080679 HPRD:00376 COL11A2 DFNA13|DFNB53|FBCG2|HKE5|PARP|STL3 collagen, type XI, alpha 2 protein-coding 561_WT_peak_2167 chr14 35008675 35009315 + 96 NA promoter-TSS (NM_018453) promoter-TSS (NM_018453) -52 NM_018453 55837 Hs.433269 NM_018453 HPRD:12631 EAPP BM036|C14orf11 E2F-associated phosphoprotein protein-coding 561_WT_peak_2668 chr16 3202827 3203065 + 96 NA Intergenic tRNA-Arg-AGG|tRNA|tRNA 17812 NM_001134655 7760 Hs.115284 NM_004220 HPRD:12224 ZNF213 CR53|ZKSCAN21|ZSCAN53 zinc finger protein 213 protein-coding 561_WT_peak_77 chr1 16767165 16767596 + 96 NA intron (NM_018090, intron 1 of 7) CpG 213 NM_001145278 55707 Hs.437385 NM_018090 HPRD:07674 NECAP2 - NECAP endocytosis associated 2 protein-coding 561_WT_peak_4605 chr20 32951098 32951427 + 96 NA intron (NM_001257138, intron 1 of 23) CpG 221 NM_031483 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH AIF4|AIP4|NAPP1|dJ468O1.1 itchy E3 ubiquitin protein ligase protein-coding 561_WT_peak_468 chr1 147931136 147931434 + 96 NA intron (NR_102404, intron 17 of 18).2 CpG 24134 NM_001135789 653598 Hs.534674 NM_001135789 ENSG00000198161 PPIAL4C COAS-2 peptidylprolyl isomerase A (cyclophilin A)-like 4C protein-coding 561_WT_peak_160 chr1 33264606 33264925 + 96 NA intron (NM_003680, intron 4 of 12) L2c|LINE|L2 -18278 NM_001256121 64766 Hs.440880 NM_022753 HPRD:07803 S100PBP S100PBPR S100P binding protein protein-coding 561_WT_peak_7373 chr9 101984617 101984779 + 96 NA promoter-TSS (NM_033087) promoter-TSS (NM_033087) 128 NM_006808 10952 Hs.191887 NM_006808 HPRD:06715 SEC61B - Sec61 beta subunit protein-coding 561_WT_peak_7080 chr8 100025272 100025665 + 96 NA promoter-TSS (NM_015243) promoter-TSS (NM_015243) -26 NM_181661 157680 Hs.191540 NM_015243 HPRD:06379 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B (yeast) protein-coding 561_WT_peak_533 chr1 153606591 153606781 + 96 NA promoter-TSS (NM_001024210) promoter-TSS (NM_001024210) -118 NM_001024210 6284 Hs.516505 NM_005979 HPRD:03586 S100A13 - S100 calcium binding protein A13 protein-coding 561_WT_peak_1883 chr12 120906981 120907349 + 96 NA promoter-TSS (NM_001037494) promoter-TSS (NM_001037494) 393 NM_003769 8683 Hs.706889 NM_003769 HPRD:09053 SRSF9 SFRS9|SRp30c serine/arginine-rich splicing factor 9 protein-coding 561_WT_peak_7400 chr9 117147596 117147948 + 96 NA intron (NM_030767, intron 1 of 21) intron (NM_030767, intron 1 of 21) 8913 NM_030767 80709 Hs.494895 NM_030767 HPRD:16148 AKNA - AT-hook transcription factor protein-coding 561_WT_peak_7316 chr9 82239063 82239282 + 96 NA intron (NM_001282749, intron 5 of 18) intron (NM_001282749, intron 5 of 18) 52484 NR_104239 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4 transducin-like enhancer of split 4 protein-coding 561_WT_peak_2290 chr14 75230059 75230355 + 96 NA exon (NM_019589, exon 1 of 21) exon (NM_019589, exon 1 of 21) 138 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 561_WT_peak_4629 chr20 36661945 36662213 + 96 NA promoter-TSS (NM_014657) promoter-TSS (NM_014657) 131 NM_021215 58490 Hs.278839 NM_021215 HPRD:08513 RPRD1B C20orf77|CREPT|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 561_WT_peak_375 chr1 111459433 111459716 + 96 NA Intergenic MLT2F|LTR|ERVL 43852 NM_000560 963 Hs.443057 NM_000560 HPRD:01054 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 561_WT_peak_1434 chr11 82868836 82869214 + 96 NA intron (NM_015885, intron 1 of 15) intron (NM_015885, intron 1 of 15) 888 NM_015885 51585 Hs.128959 NM_015885 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 561_WT_peak_7291 chr9 73026433 73026648 + 96 NA intron (NM_001206, intron 1 of 1) intron (NM_001206, intron 1 of 1) 3033 NM_001206 687 Hs.150557 NM_001206 HPRD:04211 KLF9 BTEB|BTEB1 Kruppel-like factor 9 protein-coding 561_WT_peak_3701 chr19 21511785 21512216 + 96 NA intron (NM_001297560, intron 1 of 3) intron (NM_001297560, intron 1 of 3) 212 NM_021269 7562 Hs.466296 NM_021269 HPRD:18322 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 561_WT_peak_1582 chr12 9800625 9801110 + 96 NA non-coding (NR_046447, exon 1 of 4) non-coding (NR_046447, exon 1 of 4) 224 NR_046446 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2, member D pseudogene pseudo 561_WT_peak_7148 chr8 129005250 129005674 + 96 NA intron (NR_003367, intron 4 of 7) intron (NR_003367, intron 4 of 7) -15682 NR_031611 100302170 NR_031611 MIR1206 MIRN1206|hsa-mir-1206 microRNA 1206 ncRNA 561_WT_peak_3862 chr19 50316517 50316801 + 96 NA promoter-TSS (NM_001171937) promoter-TSS (NM_001171937) -92 NM_001171937 80199 Hs.288800 NM_025129 HPRD:08662 FUZ FY|NTD fuzzy planar cell polarity protein protein-coding 561_WT_peak_1424 chr11 78003490 78003557 + 96 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 49403 NM_012296 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 561_WT_peak_6238 chr6 28625951 28626203 + 96 NA Intergenic tRNA-Ala-GCY_|tRNA|tRNA -70965 NM_052923 114821 Hs.176980 NM_052923 HPRD:11720 ZBED9 Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3 zinc finger, BED-type containing 9 protein-coding 561_WT_peak_7193 chr8 146078220 146078451 + 96 NA 5' UTR (NM_014066, exon 1 of 2) 5' UTR (NM_014066, exon 1 of 2) 117 NM_001081004 28991 Hs.631856 NM_014066 HPRD:16301 COMMD5 HCARG COMM domain containing 5 protein-coding 561_WT_peak_850 chr10 3846495 3846732 + 96 NA Intergenic Intergenic -19140 NM_001160124 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 561_WT_peak_4405 chr2 192502286 192502478 + 96 NA Intergenic Tigger15a|DNA|TcMar-Tigger -40416 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 561_WT_peak_1876 chr12 120451406 120451861 + 96 NA intron (NM_207311, intron 2 of 8) intron (NM_207311, intron 2 of 8) 23985 NM_207311 92558 Hs.369763 NM_207311 HPRD:14292 CCDC64 BICDR-1|H_267D11.1 coiled-coil domain containing 64 protein-coding 561_WT_peak_3599 chr19 6661812 6661996 + 96 NA Intergenic Tigger4|DNA|TcMar-Tigger 8695 NM_003807 8740 Hs.129708 NM_003807 HPRD:05157 TNFSF14 CD258|HVEML|LIGHT|LTg|TR2 tumor necrosis factor (ligand) superfamily, member 14 protein-coding 561_WT_peak_2842 chr16 50781202 50781743 + 96 NA intron (NM_015247, intron 3 of 19) intron (NM_015247, intron 3 of 19) 5443 NM_001042412 1540 Hs.578973 NM_015247 HPRD:05427 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 cylindromatosis (turban tumor syndrome) protein-coding 561_WT_peak_5130 chr3 56717392 56717611 + 96 NA promoter-TSS (NM_001112736) promoter-TSS (NM_001112736) -366 NM_001112736 23272 Hs.116877 NM_015224 HPRD:10183 FAM208A C3orf63|RAP140|se89-1 family with sequence similarity 208, member A protein-coding 561_WT_peak_4072 chr2 55360679 55360966 + 96 NA Intergenic MIR3|SINE|MIR -83088 NM_153828 57142 Hs.637850 NM_007008 HPRD:07259 RTN4 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 561_WT_peak_6710 chr7 73097332 73097733 + 96 NA promoter-TSS (NR_045512) promoter-TSS (NR_045512) 249 NM_032317 84277 Hs.647046 NM_032317 HPRD:10303 DNAJC30 WBSCR18 DnaJ (Hsp40) homolog, subfamily C, member 30 protein-coding 561_WT_peak_2739 chr16 23607306 23607752 + 96 NA exon (NM_005003, exon 1 of 5) exon (NM_005003, exon 1 of 5) 110 NM_005003 4706 Hs.189716 NM_005003 HPRD:11951 NDUFAB1 ACP|FASN2A|SDAP NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa protein-coding 561_WT_peak_7396 chr9 115095651 115095900 + 96 NA promoter-TSS (NM_001244898) promoter-TSS (NM_001244898) 169 NM_005156 9991 Hs.269988 NM_005156 HPRD:09603 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 561_WT_peak_6492 chr6 139309217 139309593 + 96 NA promoter-TSS (NM_001128617) promoter-TSS (NM_001128617) -7 NM_031922 85021 Hs.334603 NM_031922 HPRD:09687 REPS1 RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 561_WT_peak_1783 chr12 88535932 88536169 + 96 NA promoter-TSS (NM_181783) promoter-TSS (NM_181783) -23 NM_181783 160418 Hs.331268 NM_181783 HPRD:10243 TMTC3 SMILE transmembrane and tetratricopeptide repeat containing 3 protein-coding 561_WT_peak_2056 chr13 50811092 50811295 + 96 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 65039 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 pseudo 561_WT_peak_7132 chr8 124829327 124829560 + 96 NA Intergenic L1M7|LINE|L1 -34784 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1-like family member 6 protein-coding 561_WT_peak_3045 chr17 13972835 13973015 + 96 NA promoter-TSS (NR_049718) promoter-TSS (NR_049718) -150 NR_049718 100874058 Hs.720411 NR_049718 ENSG00000236088 COX10-AS1 COX10-AS|COX10AS COX10 antisense RNA 1 ncRNA 561_WT_peak_4582 chr20 24008022 24008294 + 96 NA Intergenic Intergenic -38742 NM_178311 92086 Hs.355394 NM_080920 HPRD:17037 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 561_WT_peak_3281 chr17 57914773 57915031 + 96 NA intron (NM_030938, intron 10 of 11) intron (NM_030938, intron 10 of 11) -3725 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 561_WT_peak_2120 chr14 21738100 21738515 + 96 NA promoter-TSS (NM_001077442) promoter-TSS (NM_001077442) -669 NM_031314 3183 Hs.508848 NM_004500 HPRD:01243 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 561_WT_peak_2984 chr17 2718366 2718552 + 96 NA intron (NM_015085, intron 2 of 24) MER5A|DNA|hAT-Charlie 18727 NM_001100398 23108 Hs.499659 NM_015085 HPRD:17028 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 561_WT_peak_6226 chr6 27833082 27833473 + 96 NA exon (NM_003511, exon 1 of 1) exon (NM_003511, exon 1 of 1) 170 NM_003511 8332 Hs.233568 NM_003511 HPRD:09103 HIST1H2AL H2A.i|H2A/i|H2AFI|dJ193B12.9 histone cluster 1, H2al protein-coding 561_WT_peak_5209 chr3 113233905 113234093 + 96 NA promoter-TSS (NM_144718) promoter-TSS (NM_144718) 35 NM_144718 152185 Hs.477144 NM_144718 HPRD:11242 SPICE1 CCDC52|SPICE spindle and centriole associated protein 1 protein-coding 561_WT_peak_1594 chr12 10765895 10766283 + 96 NA promoter-TSS (NM_001300739) promoter-TSS (NM_001300739) 119 NM_018048 55110 Hs.104650 NM_018048 MAGOHB MGN2|mago|magoh mago-nashi homolog B (Drosophila) protein-coding 561_WT_peak_3091 chr17 26972105 26972497 + 96 NA promoter-TSS (NM_014680) promoter-TSS (NM_014680) -124 NM_014680 9703 Hs.151761 NM_014680 HPRD:11064 KIAA0100 BCOX|BCOX1|CT101 KIAA0100 protein-coding 561_WT_peak_3856 chr19 49999171 49999641 + 96 NA promoter-TSS (NM_001015) promoter-TSS (NM_001015) -216 NM_001015 6205 Hs.433529 NM_001015 HPRD:01599 RPS11 S11 ribosomal protein S11 protein-coding 561_WT_peak_3658 chr19 14628974 14629162 + 96 NA promoter-TSS (NM_001300914) promoter-TSS (NM_001300914) 303 NM_006145 3337 Hs.515210 NM_006145 HPRD:05198 DNAJB1 HSPF1|Hdj1|Hsp40|RSPH16B|Sis1 DnaJ (Hsp40) homolog, subfamily B, member 1 protein-coding 561_WT_peak_5822 chr5 76034653 76035257 + 96 NA Intergenic Intergenic 23087 NM_001992 2149 Hs.482562 NM_001992 HPRD:01763 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II (thrombin) receptor protein-coding 561_WT_peak_7344 chr9 94015775 94016028 + 96 NA intron (NM_001698, intron 6 of 9) intron (NM_001698, intron 6 of 9) 108305 NM_001698 549 Hs.175905 NM_001698 HPRD:08987 AUH - AU RNA binding protein/enoyl-CoA hydratase protein-coding 561_WT_peak_4162 chr2 85132679 85133051 + 96 NA intron (NM_021103, intron 1 of 2) CpG 102 NM_021103 9168 Hs.446574 NM_021103 HPRD:01779 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 561_WT_peak_6434 chr6 111195899 111196344 + 96 NA non-coding (NR_109768, exon 1 of 6) non-coding (NR_109768, exon 1 of 6) 134 NM_001634 262 Hs.159118 NM_001634 HPRD:01622 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 561_WT_peak_3892 chr19 54714712 54714956 + 96 NA Intergenic Intergenic 10108 NM_001013 6203 Hs.467284 NM_001013 HPRD:04696 RPS9 S9 ribosomal protein S9 protein-coding 561_WT_peak_6381 chr6 82957177 82957714 + 96 NA promoter-TSS (NM_001300906) promoter-TSS (NM_001300906) 26 NM_015525 25998 Hs.306425 NM_015525 HPRD:12105 IBTK BTBD26|BTKI inhibitor of Bruton agammaglobulinemia tyrosine kinase protein-coding 561_WT_peak_3993 chr2 26467231 26467483 + 95 NA promoter-TSS (NM_000183) promoter-TSS (NM_000183) 237 NM_000182 3030 Hs.516032 NM_000182 HPRD:02934 HADHA ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit protein-coding 561_WT_peak_1729 chr12 56709548 56709816 + 95 NA TTS (NM_001166279) TTS (NM_001166279) 446 NM_001190991 10330 Hs.8752 NM_014255 HPRD:12056 CNPY2 HP10390|MSAP|TMEM4|ZSIG9 canopy FGF signaling regulator 2 protein-coding 561_WT_peak_5544 chr4 89205972 89206291 + 95 NA promoter-TSS (NM_152542) promoter-TSS (NM_152542) -148 NM_152542 152926 Hs.43744 NM_152542 HPRD:15167 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent, 1K protein-coding 561_WT_peak_6663 chr7 44886846 44887565 + 95 NA intron (NM_138635, intron 1 of 4) intron (NM_138635, intron 1 of 4) 520 NM_201517 94239 Hs.488189 NM_012412 HPRD:13623 H2AFV H2A.Z-2|H2AV H2A histone family, member V protein-coding 561_WT_peak_6814 chr7 107300250 107300480 + 95 NA promoter-TSS (NM_000441) promoter-TSS (NM_000441) -715 NM_000441 5172 Hs.571246 NM_000441 HPRD:05735 SLC26A4 DFNB4|EVA|PDS|TDH2B solute carrier family 26 (anion exchanger), member 4 protein-coding 561_WT_peak_2414 chr15 29561604 29562346 + 95 NA promoter-TSS (NM_138704) promoter-TSS (NM_138704) 45 NM_138704 56160 Hs.94011 NM_138704 HPRD:10503 NDNL2 HCA4|MAGEG1|MAGEL3|NSE3|NSMCE3 necdin-like 2 protein-coding 561_WT_peak_72 chr1 16160957 16161827 + 95 NA non-coding (NR_024279, exon 2 of 2) non-coding (NR_024279, exon 2 of 2) -12967 NM_015001 23013 Hs.744843 NM_015001 HPRD:10230 SPEN HIAA0929|MINT|RBM15C|SHARP spen family transcriptional repressor protein-coding 561_WT_peak_951 chr10 35438515 35438717 + 95 NA intron (NR_051975, intron 2 of 3) intron (NR_051975, intron 2 of 3) 11906 NM_183011 1390 Hs.200250 NM_001881 HPRD:00444 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 561_WT_peak_1040 chr10 73508417 73508900 + 95 NA 3' UTR (NM_022153, exon 7 of 7) 3' UTR (NM_022153, exon 7 of 7) -11077 NM_001168390 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 561_WT_peak_3696 chr19 19887592 19887753 + 95 NA promoter-TSS (NR_026956) promoter-TSS (NR_026956) -450 NR_026956 284440 Hs.665307 NR_026956 LINC00663 - long intergenic non-protein coding RNA 663 ncRNA 561_WT_peak_6125 chr6 24721783 24722063 + 95 NA Intergenic Intergenic -2520 NM_030939 81688 Hs.744857 NM_030939 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 561_WT_peak_1475 chr11 108107360 108107588 + 95 NA intron (NM_000051, intron 5 of 62) intron (NM_000051, intron 5 of 62) 13915 NM_000051 472 Hs.367437 NM_000051 HPRD:06347 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 561_WT_peak_2559 chr15 75917950 75918581 + 95 NA 5' UTR (NM_005701, exon 1 of 9) 5' UTR (NM_005701, exon 1 of 9) 181 NM_001042581 10073 Hs.21577 NM_005701 HPRD:07441 SNUPN KPNBL|RNUT1|Snurportin1 snurportin 1 protein-coding 561_WT_peak_894 chr10 15139465 15139781 + 95 NA promoter-TSS (NM_153244) promoter-TSS (NM_153244) -305 NM_153244 221060 Hs.567777 NM_153244 HPRD:16572 C10orf111 bA455B2.4 chromosome 10 open reading frame 111 protein-coding 561_WT_peak_1951 chr13 22688851 22689021 + 95 NA Intergenic Intergenic -95488 NR_103810 100506622 Hs.255773 NR_103810 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 561_WT_peak_4295 chr2 130938966 130939152 + 95 NA promoter-TSS (NM_025029) promoter-TSS (NM_025029) 271 NM_017951 55627 Hs.516450 NM_017751 HPRD:13374 SMPD4 NET13|NSMASE-3|NSMASE3 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) protein-coding 561_WT_peak_5701 chr5 40338688 40338882 + 95 NA Intergenic L1PA6|LINE|L1 286392 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 561_WT_peak_5355 chr3 187462994 187463225 + 95 NA intron (NM_001706, intron 1 of 9) intron (NM_001706, intron 1 of 9) 404 NM_001706 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 561_WT_peak_7238 chr9 27573081 27573381 + 95 NA intron (NM_145005, intron 1 of 4) CpG 260 NM_018325 203228 Hs.493639 NM_018325 HPRD:12975 C9orf72 ALSFTD|FTDALS chromosome 9 open reading frame 72 protein-coding 561_WT_peak_6989 chr8 41372479 41372758 + 95 NA Intergenic Intergenic -14107 NM_032336 84296 Hs.656996 NM_032336 HPRD:11583 GINS4 SLD5 GINS complex subunit 4 (Sld5 homolog) protein-coding 561_WT_peak_3100 chr17 27717313 27717715 + 95 NA promoter-TSS (NM_025142) promoter-TSS (NM_025142) -166 NR_039749 100616122 NR_039749 miRBase:MI0016890 MIR4523 - microRNA 4523 ncRNA 561_WT_peak_560 chr1 156192726 156193016 + 95 NA intron (NM_001199664, intron 1 of 4) intron (NM_001199664, intron 1 of 4) 10092 NM_001199663 100527963 Hs.530479 NM_001199661 ENSG00000260238 PMF1-BGLAP PMF1 PMF1-BGLAP readthrough protein-coding 561_WT_peak_1118 chr10 102130657 102130898 + 95 NA Intergenic Intergenic -2556 NR_026762 90271 Hs.628088 NR_026762 LINC00263 C10orf75|NCRNA00263 long intergenic non-protein coding RNA 263 ncRNA 561_WT_peak_4959 chr22 43741923 43742103 + 95 NA Intergenic Intergenic -2619 NM_173050 80274 Hs.133995 NM_173050 SCUBE1 - signal peptide, CUB domain, EGF-like 1 protein-coding 561_WT_peak_2079 chr13 79980332 79980825 + 95 NA promoter-TSS (NM_001286631) promoter-TSS (NM_001286631) 134 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 561_WT_peak_5276 chr3 141130993 141131201 + 95 NA intron (NM_001080412, intron 7 of 7) intron (NM_001080412, intron 7 of 7) -74829 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 561_WT_peak_7356 chr9 97633511 97633811 + 95 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 61417 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 561_WT_peak_5895 chr5 130616920 130617159 + 95 NA intron (NM_001038702, intron 1 of 4) intron (NM_001038702, intron 1 of 4) 17337 NM_020240 56990 Hs.508829 NM_020240 HPRD:16695 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 561_WT_peak_4959-2 chr22 43742314 43742361 + 95 NA Intergenic L2c|LINE|L2 -2943 NM_173050 80274 Hs.133995 NM_173050 SCUBE1 - signal peptide, CUB domain, EGF-like 1 protein-coding 561_WT_peak_5303 chr3 158519921 158520119 + 95 NA exon (NM_022736, exon 1 of 16) exon (NM_022736, exon 1 of 16) 305 NM_001167903 64747 Hs.58663 NM_022736 HPRD:07851 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 561_WT_peak_6449 chr6 116892617 116893059 + 95 NA intron (NM_015952, intron 1 of 6) CpG 308 NM_016104 51389 Hs.532164 NM_015952 HPRD:15286 RWDD1 PTD013 RWD domain containing 1 protein-coding 561_WT_peak_6711 chr7 73097971 73098263 + 95 NA promoter-TSS (NM_032317) promoter-TSS (NM_032317) 219 NM_001202560 114049 Hs.647063 NM_017528 HPRD:15659 WBSCR22 HASJ4442|HUSSY-3|MERM1|PP3381|WBMT Williams Beuren syndrome chromosome region 22 protein-coding 561_WT_peak_3721 chr19 34664141 34664481 + 95 NA intron (NM_015578, intron 1 of 9) intron (NM_015578, intron 1 of 9) 959 NM_001114093 26065 Hs.744009 NM_015578 HPRD:12697 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, SCD6 homolog A (S. cerevisiae) protein-coding 561_WT_peak_2640 chr16 284971 285297 + 95 NA intron (NR_104317, intron 1 of 13) CpG 589 NM_001284497 83986 Hs.513225 NM_032039 HPRD:12677 ITFG3 C16orf9|gs19 integrin alpha FG-GAP repeat containing 3 protein-coding 561_WT_peak_3822 chr19 47777178 47777194 + 95 NA promoter-TSS (NM_178511) promoter-TSS (NM_178511) -473 NR_037675 255783 Hs.128690 NM_178511 ENSG00000257704 INAFM1 PRR24 InaF-motif containing 1 protein-coding 561_WT_peak_2642 chr16 475223 475789 + 95 NA promoter-TSS (NM_014700) promoter-TSS (NM_014700) -162 NM_014700 9727 Hs.531642 NM_014700 HPRD:18521 RAB11FIP3 CART1|Rab11-FIP3 RAB11 family interacting protein 3 (class II) protein-coding 561_WT_peak_7358 chr9 98224912 98225120 + 95 NA promoter-TSS (NR_038982) promoter-TSS (NR_038982) -875 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 561_WT_peak_5769 chr5 61708586 61708901 + 95 NA 5' UTR (NM_016338, exon 1 of 30) 5' UTR (NM_016338, exon 1 of 30) 170 NM_016338 51194 Hs.482269 NM_016338 HPRD:10003 IPO11 RanBP11 importin 11 protein-coding 561_WT_peak_1804 chr12 94602209 94602420 + 95 NA intron (NM_005761, intron 4 of 30) intron (NM_005761, intron 4 of 30) -53983 NR_037687 10154 Hs.584845 NM_005761 HPRD:05036 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 561_WT_peak_3231 chr17 46985321 46985945 + 95 NA promoter-TSS (NM_023079) promoter-TSS (NM_023079) -98 NM_023079 65264 Hs.514297 NM_023079 HPRD:08589 UBE2Z USE1 ubiquitin-conjugating enzyme E2Z protein-coding 561_WT_peak_6411 chr6 99968858 99969083 + 95 NA promoter-TSS (NM_001195131) promoter-TSS (NM_001195131) 100 NM_001195131 100130890 Hs.634506 NM_001195131 TSTD3 - thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 protein-coding 561_WT_peak_5942 chr5 137878338 137878915 + 95 NA intron (NM_001256302, intron 1 of 10) CpG 363 NM_001291975 2107 Hs.483494 NM_004730 HPRD:02616 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 561_WT_peak_426 chr1 144310878 144311380 + 95 NA intron (NR_111953, intron 2 of 3) intron (NR_111953, intron 2 of 3) 29630 NR_109754 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 561_WT_peak_4129 chr2 70351508 70351678 + 95 NA intron (NR_024444, intron 1 of 1) intron (NR_024444, intron 1 of 1) 855 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LOC100133985 - uncharacterized LOC100133985 ncRNA 561_WT_peak_1711 chr12 53845636 53845824 + 95 NA promoter-TSS (NM_001128914) promoter-TSS (NM_001128914) -156 NM_001128914 5094 Hs.546271 NM_005016 HPRD:03129 PCBP2 HNRNPE2|HNRPE2|hnRNP-E2 poly(rC) binding protein 2 protein-coding 561_WT_peak_2213 chr14 53575959 53576187 + 95 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 43973 NM_001160147 80821 Hs.125525 NM_030637 HPRD:07482 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 561_WT_peak_7295 chr9 73033954 73034374 + 95 NA Intergenic CpG -4591 NM_001206 687 Hs.150557 NM_001206 HPRD:04211 KLF9 BTEB|BTEB1 Kruppel-like factor 9 protein-coding 561_WT_peak_4812 chr21 43948049 43948230 + 95 NA intron (NM_018964, intron 4 of 20) intron (NM_018964, intron 4 of 20) 28397 NM_018964 54020 Hs.547009 NM_018964 HPRD:10479 SLC37A1 G3PP solute carrier family 37 (glucose-6-phosphate transporter), member 1 protein-coding 561_WT_peak_6486 chr6 137113754 137114004 + 95 NA promoter-TSS (NM_005923) promoter-TSS (NM_005923) -223 NM_005923 4217 Hs.186486 NM_005923 HPRD:03904 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 561_WT_peak_927 chr10 28623256 28623485 + 95 NA Intergenic Intergenic -45091 NR_107053 102465880 NR_107053 MIR8086 hsa-mir-8086 microRNA 8086 ncRNA 561_WT_peak_2899 chr16 71879536 71880095 + 95 NA promoter-TSS (NM_001137675) promoter-TSS (NM_001137675) -79 NM_001137675 342371 Hs.743239 NM_001137675 ENSG00000224470 ATXN1L BOAT|BOAT1 ataxin 1-like protein-coding 561_WT_peak_5434 chr4 26320622 26320818 + 95 NA promoter-TSS (NM_005349) promoter-TSS (NM_005349) -612 NM_203283 3516 Hs.479396 NM_005349 HPRD:00920 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 561_WT_peak_6685 chr7 65215837 65215885 + 95 NA promoter-TSS (NR_003110) promoter-TSS (NR_003110) 41 NR_103527 441242 Hs.373941 NM_001013464 LOC441242 - uncharacterized LOC441242 ncRNA 561_WT_peak_3841 chr19 49309991 49310161 + 95 NA intron (NM_001284325, intron 3 of 11) intron (NM_001284325, intron 3 of 11) 4244 NM_001190 587 Hs.512670 NM_001190 HPRD:00217 BCAT2 BCAM|BCATM|BCT2|PP18 branched chain amino-acid transaminase 2, mitochondrial protein-coding 561_WT_peak_2781 chr16 30545567 30545777 + 95 NA exon (NM_023931, exon 1 of 2) exon (NM_023931, exon 1 of 2) 522 NM_023931 65988 Hs.592032 NM_023931 ZNF747 - zinc finger protein 747 protein-coding 561_WT_peak_6235 chr6 28104553 28104964 + 95 NA non-coding (NR_103455, exon 1 of 3) non-coding (NR_103455, exon 1 of 3) 336 NR_103455 100129195 Hs.659413 NR_103455 ENSG00000269293 ZSCAN16-AS1 - ZSCAN16 antisense RNA 1 ncRNA 561_WT_peak_6013 chr5 169706118 169706331 + 95 NA intron (NM_005565, intron 3 of 20) intron (NM_005565, intron 3 of 20) 18598 NM_005565 3937 Hs.304475 NM_005565 LCP2 SLP-76|SLP76 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) protein-coding 561_WT_peak_6640 chr7 36764008 36764304 + 95 NA promoter-TSS (NM_001637) promoter-TSS (NM_001637) -2 NM_001637 313 Hs.488007 NM_001637 HPRD:00027 AOAH - acyloxyacyl hydrolase (neutrophil) protein-coding 561_WT_peak_6034 chr5 176784872 176785076 + 95 NA 5' UTR (NM_006480, exon 1 of 15) 5' UTR (NM_006480, exon 1 of 15) 130 NM_006480 10636 Hs.9347 NM_006480 HPRD:03944 RGS14 - regulator of G-protein signaling 14 protein-coding 561_WT_peak_5394-2 chr4 1858426 1858507 + 94 NA promoter-TSS (NM_012318) promoter-TSS (NM_012318) -492 NM_012318 3954 Hs.120165 NM_012318 HPRD:05101 LETM1 - leucine zipper-EF-hand containing transmembrane protein 1 protein-coding 561_WT_peak_738 chr1 222828289 222828500 + 94 NA intron (NM_001300867, intron 13 of 22) intron (NM_001300867, intron 13 of 22) 10749 NM_001300867 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 melanoma inhibitory activity family, member 3 protein-coding 561_WT_peak_2379 chr14 102828978 102829164 + 94 NA promoter-TSS (NM_014844) promoter-TSS (NM_014844) 182 NM_032630 51550 Hs.129634 NM_032630 HPRD:16715 CINP - cyclin-dependent kinase 2 interacting protein protein-coding 561_WT_peak_1355 chr11 65193385 65193389 + 94 NA non-coding (NR_028272, exon 1 of 1) non-coding (NR_028272, exon 1 of 1) 3118 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_1349 chr11 65189359 65189561 + 94 NA promoter-TSS (NR_028272) promoter-TSS (NR_028272) -809 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_5550 chr4 90224368 90224624 + 94 NA intron (NM_198281, intron 1 of 1) intron (NM_198281, intron 1 of 1) 4665 NM_198281 285513 Hs.605082 NM_198281 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 561_WT_peak_5443 chr4 37930777 37930972 + 94 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) -31182 NM_006607 10744 Hs.668806 NM_006607 HPRD:09176 PTTG2 - pituitary tumor-transforming 2 protein-coding 561_WT_peak_3157 chr17 37778331 37778527 + 94 NA Intergenic Intergenic -4748 NM_032192 84152 Hs.286192 NM_032192 HPRD:05097 PPP1R1B DARPP-32|DARPP32 protein phosphatase 1, regulatory (inhibitor) subunit 1B protein-coding 561_WT_peak_1658 chr12 42693829 42694003 + 94 NA Intergenic Intergenic 26016 NM_033114 85437 Hs.496279 NM_033114 HPRD:14344 ZCRB1 MADP-1|MADP1|RBM36|SNRNP31|ZCCHC19 zinc finger CCHC-type and RNA binding motif 1 protein-coding 561_WT_peak_3825 chr19 48111510 48111830 + 94 NA intron (NM_015711, intron 1 of 14) CpG 217 NM_015711 29998 Hs.97244 NM_015711 HPRD:09296 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 561_WT_peak_3810 chr19 46273671 46273796 + 94 NA 3' UTR (NM_001288766, exon 13 of 13) 3' UTR (NM_001288766, exon 13 of 13) -1236 NM_175875 147912 Hs.43314 NM_175875 HPRD:09024 SIX5 BOR2|DMAHP SIX homeobox 5 protein-coding 561_WT_peak_5394 chr4 1857931 1858308 + 94 NA promoter-TSS (NM_012318) promoter-TSS (NM_012318) -145 NM_012318 3954 Hs.120165 NM_012318 HPRD:05101 LETM1 - leucine zipper-EF-hand containing transmembrane protein 1 protein-coding 561_WT_peak_2948 chr16 88877942 88878257 + 94 NA intron (NM_001030018, intron 1 of 4) CpG-9751 243 NM_000485 353 Hs.28914 NM_000485 HPRD:00029 APRT AMP|APRTD adenine phosphoribosyltransferase protein-coding 561_WT_peak_2639 chr16 279377 279589 + 94 NA promoter-TSS (NM_018032) promoter-TSS (NM_018032) -34 NM_018032 55692 Hs.16803 NM_018032 HPRD:08476 LUC7L LUC7-LIKE|LUC7B1|Luc7|SR+89|hLuc7B1 LUC7-like (S. cerevisiae) protein-coding 561_WT_peak_4661 chr20 47377160 47377368 + 94 NA intron (NM_020820, intron 1 of 39) L2b|LINE|L2 67156 NM_020820 57580 Hs.153310 NM_020820 HPRD:06066 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 561_WT_peak_3024 chr17 7760509 7760749 + 94 NA promoter-TSS (NM_144607) promoter-TSS (NM_144607) -435 NM_144607 124637 Hs.27475 NM_144607 HPRD:13408 CYB5D1 - cytochrome b5 domain containing 1 protein-coding 561_WT_peak_61 chr1 11779772 11780026 + 94 NA 3' UTR (NM_198545, exon 7 of 7) 3' UTR (NM_198545, exon 7 of 7) -16243 NM_001040196 57085 Hs.464438 NM_020350 HPRD:16379 AGTRAP ATRAP angiotensin II receptor-associated protein protein-coding 561_WT_peak_4176 chr2 86333365 86333580 + 94 NA promoter-TSS (NM_015425) promoter-TSS (NM_015425) 167 NM_017952 55037 Hs.323489 NM_017952 HPRD:08631 PTCD3 MRP-S39 pentatricopeptide repeat domain 3 protein-coding 561_WT_peak_2287 chr14 74724347 74724517 + 94 NA intron (NM_182894, intron 3 of 4) CpG 18257 NM_182894 338917 Hs.449771 NM_182894 HPRD:08852 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 561_WT_peak_2421 chr15 34659608 34660303 + 94 NA promoter-TSS (NM_153613) promoter-TSS (NM_153613) -560 NM_153613 254531 Hs.352614 NM_153613 HPRD:08315 LPCAT4 AGPAT7|AYTL3|LPAAT-eta|LPEAT2 lysophosphatidylcholine acyltransferase 4 protein-coding 561_WT_peak_138 chr1 28240888 28241364 + 94 NA 5' UTR (NM_002946, exon 1 of 9) 5' UTR (NM_002946, exon 1 of 9) 182 NM_001297558 6118 Hs.79411 NM_002946 HPRD:01566 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2, 32kDa protein-coding 561_WT_peak_6639 chr7 35840844 35841069 + 94 NA promoter-TSS (NR_120511) promoter-TSS (NR_120511) 360 NM_001011553 989 Hs.191346 NM_001788 SEPT7 CDC10|CDC3|NBLA02942|SEPT7A septin 7 protein-coding 561_WT_peak_7204 chr9 4971345 4971594 + 94 NA Intergenic LTR16B1|LTR|ERVL -13776 NM_004972 3717 Hs.656213 NM_004972 HPRD:00993 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 561_WT_peak_5107 chr3 49377521 49378077 + 94 NA promoter-TSS (NM_199443) promoter-TSS (NM_199443) -263 NM_003363 7375 Hs.77500 NM_003363 HPRD:04598 USP4 UNP|Unph ubiquitin specific peptidase 4 (proto-oncogene) protein-coding 561_WT_peak_5408 chr4 6857380 6857761 + 94 NA intron (NM_001100590, intron 3 of 8) intron (NM_001100590, intron 3 of 8) -53601 NM_001113361 57533 Hs.518611 NM_020773 HPRD:11623 TBC1D14 - TBC1 domain family, member 14 protein-coding 561_WT_peak_1355-2 chr11 65193433 65193698 + 94 NA non-coding (NR_028272, exon 1 of 1) non-coding (NR_028272, exon 1 of 1) 3296 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_6558 chr6 170615867 170616080 + 94 NA intron (NM_001286381, intron 1 of 8) CpG 163 NM_032448 84498 Hs.369522 NM_032448 HPRD:11165 FAM120B CCPG|KIAA1838|PGCC1|dJ894D12.1 family with sequence similarity 120B protein-coding 561_WT_peak_928 chr10 28624251 28624437 + 94 NA Intergenic MLT1F|LTR|ERVL-MaLR -46065 NR_107053 102465880 NR_107053 MIR8086 hsa-mir-8086 microRNA 8086 ncRNA 561_WT_peak_652 chr1 184129429 184129789 + 94 NA Intergenic MLT1H|LTR|ERVL-MaLR 108824 NR_125335 116461 Hs.548197 NM_052965 HPRD:12292 TSEN15 C1orf19|sen15 TSEN15 tRNA splicing endonuclease subunit protein-coding 561_WT_peak_1863 chr12 112568307 112568596 + 94 NA intron (NM_001143906, intron 2 of 11) intron (NM_001143906, intron 2 of 11) 5102 NM_006700 10906 Hs.5148 NM_006700 HPRD:10994 TRAFD1 FLN29 TRAF-type zinc finger domain containing 1 protein-coding 561_WT_peak_1161 chr10 124739715 124740137 + 94 NA 5' UTR (NM_153336, exon 1 of 7) 5' UTR (NM_153336, exon 1 of 7) 370 NM_153336 118672 Hs.281004 NM_153336 HPRD:16586 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 561_WT_peak_3490 chr18 42339258 42339460 + 94 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 78496 NM_015559 26040 Hs.435458 NM_015559 HPRD:10224 SETBP1 SEB SET binding protein 1 protein-coding 561_WT_peak_4229 chr2 98335067 98335266 + 94 NA intron (NM_001079, intron 2 of 13) intron (NM_001079, intron 2 of 13) 5135 NM_001079 7535 Hs.234569 NM_001079 HPRD:01495 ZAP70 SRK|STCD|STD|TZK|ZAP-70 zeta-chain (TCR) associated protein kinase 70kDa protein-coding 561_WT_peak_5362 chr3 192610963 192611293 + 94 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 24822 NM_178496 151963 Hs.151443 NM_178496 HPRD:14092 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 561_WT_peak_484 chr1 149294559 149294841 + 94 NA Intergenic tRNA-Gly-GGG|tRNA|tRNA 7249 NR_111934 644634 Hs.723057 NR_111934 FAM231D - family with sequence similarity 231, member D ncRNA 561_WT_peak_1240 chr11 32112847 32113359 + 94 NA intron (NM_002901, intron 1 of 5) CpG 626 NM_002901 5954 Hs.97887 NM_002901 HPRD:04111 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1, EF-hand calcium binding domain protein-coding 561_WT_peak_5547 chr4 89377972 89378375 + 94 NA promoter-TSS (NM_016323) promoter-TSS (NM_016323) -95 NM_016323 51191 Hs.26663 NM_016323 HPRD:10502 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 561_WT_peak_5382 chr4 124686 124859 + 94 NA 5' UTR (NM_001289930, exon 1 of 2) 5' UTR (NM_001289930, exon 1 of 2) 414 NM_001289930 255403 Hs.636638 NM_001039127 ZNF718 - zinc finger protein 718 protein-coding 561_WT_peak_1572 chr12 8142692 8142882 + 94 NA Intergenic Intergenic -42572 NM_018416 55810 Hs.120844 NM_018416 HPRD:17014 FOXJ2 FHX forkhead box J2 protein-coding 561_WT_peak_2991 chr17 4618342 4618562 + 93 NA intron (NM_001257329, intron 2 of 14) intron (NM_001257329, intron 2 of 14) 4663 NM_001257328 409 Hs.435811 NM_004313 HPRD:00147 ARRB2 ARB2|ARR2|BARR2 arrestin, beta 2 protein-coding 561_WT_peak_5103 chr3 49058702 49058937 + 93 NA promoter-TSS (NM_018114) promoter-TSS (NM_018114) 201 NM_199073 25915 Hs.31387 NM_199069 NDUFAF3 2P1|C3orf60|E3-3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 protein-coding 561_WT_peak_5128 chr3 53925422 53925808 + 93 NA intron (NM_021237, intron 1 of 4) CpG 374 NM_021237 58515 Hs.58471 NM_021237 HPRD:07448 SELK HSPC297|SelK selenoprotein K protein-coding 561_WT_peak_2003 chr13 41495777 41496198 + 93 NA promoter-TSS (NR_003365) promoter-TSS (NR_003365) -77 NR_003365 283507 Hs.442781 NR_003365 ENSG00000239827 SUGT1P3 SUGT1L1 SUGT1 pseudogene 3 pseudo 561_WT_peak_451 chr1 145928700 145928897 + 93 NA intron (NR_111936, intron 7 of 9).2 intron (NR_111936, intron 7 of 9).2 16679 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 561_WT_peak_900 chr10 17271466 17271996 + 93 NA exon (NM_003380, exon 2 of 10) exon (NM_003380, exon 2 of 10) 253 NR_108061 100507347 Hs.740502 NR_108060 VIM-AS1 - VIM antisense RNA 1 ncRNA 561_WT_peak_539 chr1 154192874 154193213 + 93 NA promoter-TSS (NM_001287815) promoter-TSS (NM_001287815) 230 NM_001297723 25912 Hs.287471 NM_015449 HPRD:16636 C1orf43 NICE-3|NS5ATP4|S863-3 chromosome 1 open reading frame 43 protein-coding 561_WT_peak_3739 chr19 36980087 36980605 + 93 NA promoter-TSS (NM_032838) promoter-TSS (NM_032838) -9 NM_032838 84924 Hs.533939 NM_032838 HPRD:15847 ZNF566 - zinc finger protein 566 protein-coding 561_WT_peak_871 chr10 6634069 6634273 + 93 NA Intergenic Intergenic 11784 NR_036502 439949 Hs.13262 NR_036502 PRKCQ-AS1 - PRKCQ antisense RNA 1 ncRNA 561_WT_peak_5519 chr4 83350344 83350694 + 93 NA exon (NM_001207000, exon 1 of 7) exon (NM_001207000, exon 1 of 7) 859 NM_031372 9987 Hs.527105 NM_005463 HPRD:06185 HNRNPDL HNRNP|HNRPDL|JKTBP|JKTBP2|laAUF1 heterogeneous nuclear ribonucleoprotein D-like protein-coding 561_WT_peak_2901 chr16 72127816 72128038 + 93 NA promoter-TSS (NM_001142317) promoter-TSS (NM_001142317) -159 NM_001142317 54957 Hs.134406 NM_017853 HPRD:11655 TXNL4B DLP|Dim2 thioredoxin-like 4B protein-coding 561_WT_peak_29 chr1 3816940 3817689 + 93 NA promoter-TSS (NM_207356) promoter-TSS (NM_207356) 346 NR_024455 100133612 Hs.307652 NR_024455 ENSG00000236423 LINC01134 - long intergenic non-protein coding RNA 1134 ncRNA 561_WT_peak_5412 chr4 8442212 8442508 + 93 NA promoter-TSS (NM_152544) promoter-TSS (NM_152544) 92 NM_001101667 8310 Hs.479122 NM_003501 HPRD:04552 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 561_WT_peak_7278 chr9 67926427 67926600 + 93 NA promoter-TSS (NM_032250) promoter-TSS (NM_032250) -248 NM_032250 84210 Hs.632671 NM_032250 HPRD:10649 ANKRD20A1 ANKRD20A ankyrin repeat domain 20 family, member A1 protein-coding 561_WT_peak_765 chr1 228327329 228327619 + 93 NA promoter-TSS (NM_001242839) promoter-TSS (NM_001242839) -311 NM_001242839 2987 Hs.376933 NM_000858 HPRD:00755 GUK1 GMK guanylate kinase 1 protein-coding 561_WT_peak_994 chr10 52384255 52384631 + 93 NA promoter-TSS (NM_147156) promoter-TSS (NM_147156) -706 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 561_WT_peak_6978 chr8 37749450 37749858 + 93 NA intron (NM_001002814, intron 1 of 5) L2a|LINE|L2 7361 NM_025151 80223 Hs.191179 NM_025151 HPRD:09787 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 (class I) protein-coding 561_WT_peak_2756 chr16 28857568 28857902 + 93 NA promoter-TSS (NM_003321) promoter-TSS (NM_003321) -6 NM_003321 7284 Hs.12084 NM_003321 HPRD:03861 TUFM COXPD4|EF-TuMT|EFTU|P43 Tu translation elongation factor, mitochondrial protein-coding 561_WT_peak_2600 chr15 90437199 90437701 + 93 NA non-coding (NR_023361, exon 1 of 7) non-coding (NR_023361, exon 1 of 7) 167 NR_023361 10239 Hs.632161 NM_005829 HPRD:03880 AP3S2 AP3S3|sigma3b adaptor-related protein complex 3, sigma 2 subunit protein-coding 561_WT_peak_678 chr1 201798261 201798514 + 93 NA promoter-TSS (NM_018085) promoter-TSS (NM_018085) 99 NM_018085 55705 Hs.596014 NM_018085 HPRD:17154 IPO9 Imp9 importin 9 protein-coding 561_WT_peak_4751 chr21 17102302 17102486 + 93 NA promoter-TSS (NM_001283042) promoter-TSS (NM_001283042) 50 NM_001283041 29761 Hs.743994 NM_013396 HPRD:05296 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 561_WT_peak_3346 chr17 73851558 73851760 + 93 NA promoter-TSS (NM_012478) promoter-TSS (NM_012478) -158 NM_012478 23558 Hs.514489 NM_012478 HPRD:06097 WBP2 WBP-2 WW domain binding protein 2 protein-coding 561_WT_peak_4731 chr20 62766703 62766956 + 93 NA Intergenic Intergenic -28645 NM_005286 2832 Hs.248118 NM_005286 NPBWR2 GPR8 neuropeptides B/W receptor 2 protein-coding 561_WT_peak_1313 chr11 61792930 61793411 + 93 NA Intergenic Intergenic -58038 NM_002032 2495 Hs.524910 NM_002032 HPRD:00615 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin, heavy polypeptide 1 protein-coding 561_WT_peak_2801 chr16 31885894 31886158 + 93 NA intron (NR_049749, intron 1 of 4) MER57E3|LTR|ERV1 947 NM_001265588 10308 Hs.460645 NM_003414 HPRD:06883 ZNF267 HZF2 zinc finger protein 267 protein-coding 561_WT_peak_664 chr1 193028389 193028663 + 93 NA promoter-TSS (NM_001199263) promoter-TSS (NM_001199263) -3 NM_001199262 51377 Hs.145469 NM_015984 HPRD:10293 UCHL5 CGI-70|INO80R|UCH-L5|UCH37 ubiquitin carboxyl-terminal hydrolase L5 protein-coding 561_WT_peak_5327 chr3 172309954 172310353 + 93 NA Intergenic L1PREC2|LINE|L1 -68856 NM_001190942 8743 Hs.478275 NM_003810 HPRD:04670 TNFSF10 APO2L|Apo-2L|CD253|TL2|TRAIL tumor necrosis factor (ligand) superfamily, member 10 protein-coding 561_WT_peak_3593 chr19 5903731 5903950 + 93 NA non-coding (NR_034166, exon 1 of 5) non-coding (NR_034166, exon 1 of 5) 184 NM_175614 126328 Hs.406062 NM_175614 HPRD:14818 NDUFA11 B14.7|CI-B14.7 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa protein-coding 561_WT_peak_3752 chr19 38704894 38705182 + 93 NA intron (NM_001135155, intron 9 of 11) intron (NM_001135155, intron 9 of 11) 9852 NM_001289978 8193 Hs.631576 NM_004647 HPRD:03393 DPF1 BAF45b|NEUD4|neuro-d4 D4, zinc and double PHD fingers family 1 protein-coding 561_WT_peak_7516 chrX 24167609 24167789 + 93 NA promoter-TSS (NM_003410) promoter-TSS (NM_003410) -63 NM_001178086 7543 Hs.336681 NM_003410 HPRD:02445 ZFX ZNF926 zinc finger protein, X-linked protein-coding 561_WT_peak_2671 chr16 3314685 3315002 + 93 NA non-coding (NR_033904, exon 1 of 2) non-coding (NR_033904, exon 1 of 2) 1075 NR_033904 283876 Hs.592092 NR_033904 ENSG00000006194 LINC00921 - long intergenic non-protein coding RNA 921 ncRNA 561_WT_peak_746 chr1 224370945 224371215 + 93 NA exon (NM_003676, exon 1 of 3) exon (NM_003676, exon 1 of 3) 170 NM_003676 8560 Hs.299878 NM_003676 HPRD:13133 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|MLD delta(4)-desaturase, sphingolipid 1 protein-coding 561_WT_peak_7457 chr9 132631426 132631789 + 93 NA promoter-TSS (NR_106914) promoter-TSS (NR_106914) -277 NR_106914 102466750 NR_106914 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 561_WT_peak_2950 chr16 89255123 89255227 + 93 NA intron (NM_004933, intron 7 of 13) (CA)n|Simple_repeat|Simple_repeat 11354 NM_001242757 146429 Hs.447544 NM_001242757 SLC22A31 - solute carrier family 22, member 31 protein-coding 561_WT_peak_4119 chr2 68947233 68947447 + 93 NA Intergenic L5|LINE|RTE -14573 NM_001007231 9938 Hs.531807 NM_014882 HPRD:09805 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 561_WT_peak_7414 chr9 123836955 123837437 + 93 NA Intergenic CpG -13378 NM_007018 11064 Hs.653263 NM_007018 HPRD:05691 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 561_WT_peak_6676 chr7 56174354 56174586 + 93 NA promoter-TSS (NM_016139) promoter-TSS (NM_016139) -283 NM_016139 51142 Hs.389996 NM_016139 HPRD:09879 CHCHD2 C7orf17 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding 561_WT_peak_1904 chr12 122985002 122985688 + 93 NA exon (NM_017612, exon 1 of 14) exon (NM_017612, exon 1 of 14) 275 NM_017612 55596 Hs.37706 NM_017612 ZCCHC8 - zinc finger, CCHC domain containing 8 protein-coding 561_WT_peak_7383 chr9 108457272 108457437 + 93 NA intron (NM_018112, intron 1 of 5) CpG 548 NM_018112 55151 Hs.411925 NM_018112 HPRD:15538 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 561_WT_peak_6758 chr7 97501469 97501773 + 93 NA promoter-TSS (NM_001178077) promoter-TSS (NM_001178077) -144 NM_133436 440 Hs.489207 NM_001673 HPRD:00153 ASNS ASNSD|TS11 asparagine synthetase (glutamine-hydrolyzing) protein-coding 561_WT_peak_2649 chr16 1470996 1471428 + 93 NA promoter-TSS (NM_001272051) promoter-TSS (NM_001272051) -411 NM_001272051 283951 Hs.58373 NM_001010878 HPRD:17332 C16orf91 CCSMST1|gs103 chromosome 16 open reading frame 91 protein-coding 561_WT_peak_4805 chr21 43299677 43299911 + 93 NA promoter-TSS (NM_001282934) promoter-TSS (NM_001282934) -203 NR_104258 63977 Hs.473893 NM_022115 HPRD:11458 PRDM15 C21orf83|PFM15|ZNF298 PR domain containing 15 protein-coding 561_WT_peak_5503 chr4 76597638 76597978 + 93 NA intron (NM_203504, intron 1 of 10) CpG 535 NM_012297 9908 Hs.303676 NM_012297 HPRD:06570 G3BP2 - GTPase activating protein (SH3 domain) binding protein 2 protein-coding 561_WT_peak_7606 chrX 119694809 119695214 + 93 NA promoter-TSS (NM_001079872) promoter-TSS (NM_001079872) -194 NM_001079872 8450 Hs.102914 NM_003588 HPRD:02251 CUL4B CUL-4B|MRXHF2|MRXS15|MRXSC|SFM2 cullin 4B protein-coding 561_WT_peak_1705 chr12 53039234 53039508 + 93 NA intron (NM_000423, intron 7 of 8) intron (NM_000423, intron 7 of 8) 6588 NM_000423 3849 Hs.707 NM_000423 HPRD:02560 KRT2 CK-2e|K2e|KRT2A|KRT2E|KRTE keratin 2 protein-coding 561_WT_peak_6736 chr7 76980927 76981144 + 92 NA intron (NM_017439, intron 18 of 30) intron (NM_017439, intron 18 of 30) -63480 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 561_WT_peak_444 chr1 145455597 145455818 + 92 NA TTS (NM_032305) TTS (NM_032305) 14680 NM_032305 84265 Hs.591456 NM_032305 HPRD:14546 POLR3GL RPC32HOM|flj32422 polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like protein-coding 561_WT_peak_142 chr1 28559322 28559514 + 92 NA intron (NM_014280, intron 1 of 8) CpG 124 NM_014280 22826 Hs.433540 NM_014280 HPRD:13236 DNAJC8 HSPC331|SPF31 DnaJ (Hsp40) homolog, subfamily C, member 8 protein-coding 561_WT_peak_4804 chr21 42798197 42798426 + 92 NA intron (NM_001178046, intron 1 of 14) CpG 353 NM_002462 4599 Hs.517307 NM_002462 HPRD:00919 MX1 IFI-78K|IFI78|MX|MxA MX dynamin-like GTPase 1 protein-coding 561_WT_peak_3218 chr17 44667688 44667915 + 92 NA promoter-TSS (NM_006178).2 promoter-TSS (NM_006178).2 -234 NM_006178 4905 Hs.431279 NM_006178 HPRD:03380 NSF SKD2 N-ethylmaleimide-sensitive factor protein-coding 561_WT_peak_3768 chr19 40696629 40696911 + 92 NA promoter-TSS (NM_002446) promoter-TSS (NM_002446) -881 NM_002446 4294 Hs.466743 NM_002446 HPRD:02533 MAP3K10 MEKK10|MLK2|MST mitogen-activated protein kinase kinase kinase 10 protein-coding 561_WT_peak_269 chr1 65533478 65533605 + 92 NA Intergenic Intergenic -9350 NR_029516 406893 NR_029516 miRBase:MI0000103 MIR101-1 MIRN101-1 microRNA 101-1 ncRNA 561_WT_peak_5249 chr3 128902238 128902559 + 92 NA intron (NM_001127192, intron 1 of 4) CpG 412 NM_001127196 7555 Hs.518249 NM_003418 HPRD:00311 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger, nucleic acid binding protein protein-coding 561_WT_peak_7415 chr9 124115987 124116178 + 92 NA intron (NR_073037, intron 4 of 7) L2c|LINE|L2 16500 NR_073037 2040 Hs.253903 NM_004099 HPRD:00585 STOM BND7|EPB7|EPB72 stomatin protein-coding 561_WT_peak_4835 chr22 19929003 19929292 + 92 NA promoter-TSS (NM_000754) promoter-TSS (NM_000754) -116 NM_000754 1312 Hs.370408 NM_000754 HPRD:00284 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 561_WT_peak_3238 chr17 47492263 47492436 + 92 NA promoter-TSS (NM_002634) promoter-TSS (NM_002634) -82 NM_002634 5245 Hs.514303 NM_002634 HPRD:01454 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 561_WT_peak_5322 chr3 171178322 171178528 + 92 NA promoter-TSS (NM_001161566) promoter-TSS (NM_001161566) -228 NM_001161562 23043 Hs.34024 NM_015028 HPRD:18206 TNIK - TRAF2 and NCK interacting kinase protein-coding 561_WT_peak_2652 chr16 2014499 2014774 + 92 NA promoter-TSS (NR_003020) promoter-TSS (NR_003020) 191 NM_002952 6187 Hs.356366 NM_002952 HPRD:04690 RPS2 LLREP3|S2 ribosomal protein S2 protein-coding 561_WT_peak_5281 chr3 141515424 141515824 + 92 NA intron (NM_139209, intron 2 of 3) intron (NM_139209, intron 2 of 3) 18581 NM_139209 131890 Hs.680654 NM_139209 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 561_WT_peak_1348 chr11 65189005 65189291 + 92 NA Intergenic Intergenic -1121 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_3607 chr19 8582561 8582757 + 92 NA Intergenic Intergenic -3611 NM_001146175 84330 Hs.515114 NM_032370 HPRD:17511 ZNF414 ZFP414 zinc finger protein 414 protein-coding 561_WT_peak_3888 chr19 54382660 54382831 + 92 NA Intergenic CpG -2722 NM_002739 5582 Hs.631564 NM_002739 HPRD:01502 PRKCG PKC-gamma|PKCC|PKCG|SCA14 protein kinase C, gamma protein-coding 561_WT_peak_5812 chr5 74532488 74532698 + 92 NA 5' UTR (NM_001164443, exon 1 of 25) 5' UTR (NM_001164443, exon 1 of 25) 110 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 561_WT_peak_5589 chr4 122722270 122722407 + 92 NA promoter-TSS (NM_001034194) promoter-TSS (NM_001034194) -134 NM_005033 5393 Hs.91728 NM_005033 HPRD:07315 EXOSC9 PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6 exosome component 9 protein-coding 561_WT_peak_1575 chr12 8332869 8333114 + 92 NA TTS (NM_001004328) TTS (NM_001004328) 186 NR_026788 440078 Hs.512257 NR_026788 ENSG00000226711 FAM66C - family with sequence similarity 66, member C ncRNA 561_WT_peak_5316 chr3 169530400 169530571 + 92 NA promoter-TSS (NM_001172780) promoter-TSS (NM_001172780) 89 NM_001172780 151827 Hs.591289 NM_153353 HPRD:14519 LRRC34 - leucine rich repeat containing 34 protein-coding 561_WT_peak_6950 chr8 26149010 26149220 + 92 NA 5' UTR (NM_002717, exon 1 of 10) 5' UTR (NM_002717, exon 1 of 10) 108 NM_002717 5520 Hs.146339 NM_002717 HPRD:09223 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2, regulatory subunit B, alpha protein-coding 561_WT_peak_5798 chr5 70015079 70015396 + 92 NA Intergenic LTR12E|LTR|ERV1 -133608 NR_027386 653188 Hs.631974 NR_027386 ENSG00000253203 GUSBP3 - glucuronidase, beta pseudogene 3 pseudo 561_WT_peak_4520 chr2 240965191 240965392 + 92 NA promoter-TSS (NM_004544) promoter-TSS (NM_004544) -472 NM_004544 4705 Hs.277677 NM_004544 HPRD:11950 NDUFA10 CI-42KD|CI-42k NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa protein-coding 561_WT_peak_1399 chr11 69064797 69065068 + 92 NA TTS (NM_138768) TTS (NM_138768) 3327 NM_001300924 26579 Hs.523848 NM_138768 HPRD:16130 MYEOV OCIM myeloma overexpressed protein-coding 561_WT_peak_2404 chr15 22465915 22466187 + 92 NA Intergenic Intergenic 52589 NR_028067 390539 Hs.666555 NR_028067 ENSG00000259435 OR4N3P OR15-2 olfactory receptor, family 4, subfamily N, member 3 pseudogene pseudo 561_WT_peak_41 chr1 8212836 8213081 + 92 NA Intergenic MIR3|SINE|MIR -126565 NM_018948 54206 Hs.605445 NM_018948 HPRD:09218 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 561_WT_peak_5409 chr4 7045380 7045636 + 92 NA promoter-TSS (NM_153376) promoter-TSS (NM_153376) 352 NM_152293 93624 Hs.518614 NM_152293 ENSG00000173011 TADA2B ADA2(beta)|ADA2B transcriptional adaptor 2B protein-coding 561_WT_peak_2351 chr14 96968760 96968965 + 92 NA promoter-TSS (NM_001293628) promoter-TSS (NM_001293628) 149 NM_001252006 10914 Hs.253726 NM_032632 HPRD:10407 PAPOLA PAP poly(A) polymerase alpha protein-coding 561_WT_peak_293 chr1 77684878 77685112 + 92 NA exon (NM_005482, exon 1 of 11) exon (NM_005482, exon 1 of 11) 137 NM_005482 10026 Hs.178305 NM_005482 HPRD:05474 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis, class K protein-coding 561_WT_peak_2051 chr13 50366895 50367127 + 92 NA promoter-TSS (NM_002267) promoter-TSS (NM_002267) 46 NM_002267 3839 Hs.527919 NM_002267 HPRD:03536 KPNA3 IPOA4|SRP1|SRP1gamma|SRP4|hSRP1 karyopherin alpha 3 (importin alpha 4) protein-coding 561_WT_peak_7032 chr8 61841905 61842090 + 92 NA Intergenic Intergenic 38310 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 561_WT_peak_6590 chr7 8165421 8165914 + 92 NA intron (NM_001276478, intron 13 of 13) intron (NM_001276478, intron 13 of 13) 136015 NM_022307 3382 Hs.487561 NM_004968 HPRD:00971 ICA1 ICA69|ICAp69 islet cell autoantigen 1, 69kDa protein-coding 561_WT_peak_867 chr10 6312246 6312700 + 92 NA Intergenic L2c|LINE|L2 -56034 NR_040079 399715 NR_040079 ENSG00000215244 LOC399715 - uncharacterized LOC399715 ncRNA 561_WT_peak_2452 chr15 43622212 43622714 + 92 NA promoter-TSS (NM_001159280) promoter-TSS (NM_001159280) -91 NM_001159280 161823 Hs.533913 NM_001012969 HPRD:11779 ADAL - adenosine deaminase-like protein-coding 561_WT_peak_2737 chr16 23521544 23521769 + 92 NA exon (NM_015044, exon 1 of 17) exon (NM_015044, exon 1 of 17) 159 NM_015044 23062 Hs.460336 NM_015044 HPRD:09347 GGA2 VEAR golgi-associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding 561_WT_peak_6327 chr6 42749829 42750038 + 92 NA Intergenic Intergenic -36049 NM_003192 6903 Hs.75064 NM_003192 HPRD:04276 TBCC CFC tubulin folding cofactor C protein-coding 561_WT_peak_7445 chr9 131710017 131710315 + 92 NA promoter-TSS (NM_014908) promoter-TSS (NM_014908) -154 NM_014908 22845 Hs.531563 NM_014908 HPRD:15525 DOLK CDG1M|DK|DK1|SEC59|TMEM15 dolichol kinase protein-coding 561_WT_peak_2028 chr13 45914521 45914775 + 91 NA promoter-TSS (NR_024458) promoter-TSS (NR_024458) 771 NM_003295 7178 Hs.374596 NM_003295 HPRD:15979 TPT1 HRF|TCTP|p02|p23 tumor protein, translationally-controlled 1 protein-coding 561_WT_peak_655 chr1 185125631 185126217 + 91 NA promoter-TSS (NM_001105518) promoter-TSS (NM_001105518) 192 NM_030934 81627 Hs.107149 NM_030934 HPRD:12722 TRMT1L C1orf25|MST070|TRM1L|bG120K12.3 tRNA methyltransferase 1 homolog (S. cerevisiae)-like protein-coding 561_WT_peak_5167 chr3 97540988 97541206 + 91 NA exon (NM_153605, exon 1 of 22) exon (NM_153605, exon 1 of 22) 213 NM_153605 131544 Hs.733378 NM_153605 CRYBG3 DKFZp667G2110 beta-gamma crystallin domain containing 3 protein-coding 561_WT_peak_5370 chr3 196359058 196359482 + 91 NA Intergenic CpG -7386 NM_198565 375387 Hs.702186 NM_198565 HPRD:17452 NRROS GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 561_WT_peak_4604 chr20 32581732 32582175 + 91 NA intron (NM_016732, intron 1 of 9) CpG 220 NR_109886 101926888 Hs.405849 NR_109885 ENSG00000228265 RALY-AS1 - RALY antisense RNA 1 ncRNA 561_WT_peak_6971 chr8 30580538 30580736 + 91 NA intron (NM_001195103, intron 1 of 11) intron (NM_001195103, intron 1 of 11) 4849 NM_001195104 2936 Hs.271510 NM_000637 HPRD:00704 GSR HEL-75 glutathione reductase protein-coding 561_WT_peak_1787 chr12 89638838 89639277 + 91 NA Intergenic L2c|LINE|L2 107579 NM_001946 1848 Hs.298654 NM_001946 HPRD:04124 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 561_WT_peak_546 chr1 155178604 155178992 + 91 NA exon (NM_002455, exon 1 of 8) exon (NM_002455, exon 1 of 8) 308 NM_002455 4580 Hs.490874 NM_002455 HPRD:11861 MTX1 MTX|MTXN metaxin 1 protein-coding 561_WT_peak_7406 chr9 117661099 117661399 + 91 NA intron (NM_001252290, intron 4 of 4) LTR67B|LTR|ERVL 31626 NM_001244 944 Hs.494901 NM_001244 TNFSF8 CD153|CD30L|CD30LG tumor necrosis factor (ligand) superfamily, member 8 protein-coding 561_WT_peak_5907 chr5 131826222 131826463 + 91 NA 5' UTR (NM_002198, exon 1 of 10) 5' UTR (NM_002198, exon 1 of 10) 123 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 561_WT_peak_3174 chr17 38804091 38804636 + 91 NA promoter-TSS (NM_003079) promoter-TSS (NM_003079) -260 NM_003079 6605 Hs.743978 NM_003079 HPRD:04382 SMARCE1 BAF57 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 561_WT_peak_2794 chr16 31106139 31106330 + 91 NA promoter-TSS (NM_206824) promoter-TSS (NM_206824) 42 NM_206824 79001 Hs.324844 NM_024006 HPRD:10540 VKORC1 EDTP308|IMAGE3455200|MST134|MST576|VKCFD2|VKOR vitamin K epoxide reductase complex, subunit 1 protein-coding 561_WT_peak_5598 chr4 140187786 140188125 + 91 NA exon (NM_032623, exon 4 of 4) exon (NM_032623, exon 4 of 4) 13537 NM_032623 84709 Hs.710036 NM_032623 HPRD:17805 MGARP C4orf49|CESP-1|HUMMR|OSAP mitochondria-localized glutamic acid-rich protein protein-coding 561_WT_peak_671 chr1 198651045 198651518 + 91 NA intron (NR_052021, intron 2 of 2) intron (NR_052021, intron 2 of 2) 43183 NM_002838 5788 Hs.654514 NM_002838 HPRD:01050 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase, receptor type, C protein-coding 561_WT_peak_4836 chr22 20104441 20104755 + 91 NA promoter-TSS (NM_001278641) promoter-TSS (NM_001278641) 220 NM_182984 27037 Hs.713579 NM_022727 HPRD:13719 TRMT2A HTF9C tRNA methyltransferase 2 homolog A (S. cerevisiae) protein-coding 561_WT_peak_2141 chr14 24025132 24025582 + 91 NA non-coding (NR_023314, exon 1 of 2) non-coding (NR_023314, exon 1 of 2) 166 NR_023314 79178 Hs.655179 NM_024328 HPRD:15505 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 561_WT_peak_1841 chr12 108954767 108955198 + 91 NA promoter-TSS (NM_014301) promoter-TSS (NM_014301) 183 NM_014706 9733 Hs.584842 NM_014706 HPRD:11532 SART3 DSAP1|P100|RP11-13G14|TIP110|p110|p110(nrb) squamous cell carcinoma antigen recognized by T cells 3 protein-coding 561_WT_peak_748 chr1 225616090 225616371 + 91 NA promoter-TSS (NM_002296) promoter-TSS (NM_002296) 327 NM_194442 3930 Hs.435166 NM_002296 HPRD:02488 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 561_WT_peak_2239 chr14 60797920 60798128 + 91 NA Intergenic Intergenic 82058 NM_021003 5494 Hs.130036 NM_021003 HPRD:16199 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent, 1A protein-coding 561_WT_peak_6495 chr6 139696329 139696745 + 91 NA promoter-TSS (NM_006079) promoter-TSS (NM_006079) -750 NM_006079 10370 Hs.82071 NM_006079 HPRD:04245 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding 561_WT_peak_5788 chr5 68389842 68390212 + 91 NA 5' UTR (NM_022902, exon 1 of 16) 5' UTR (NM_022902, exon 1 of 16) 251 NM_024055 64924 Hs.631975 NM_022902 HPRD:06381 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 (zinc transporter), member 5 protein-coding 561_WT_peak_3135 chr17 34890682 34891264 + 91 NA promoter-TSS (NM_178517) promoter-TSS (NM_178517) 332 NM_025109 80179 Hs.302051 NM_025109 HPRD:10107 MYO19 MYOHD1 myosin XIX protein-coding 561_WT_peak_3510 chr18 54384048 54384278 + 91 NA intron (NM_015285, intron 12 of 27) intron (NM_015285, intron 12 of 27) 65547 NM_052834 23335 Hs.465213 NM_015285 HPRD:10306 WDR7 TRAG WD repeat domain 7 protein-coding 561_WT_peak_3107 chr17 28804292 28804637 + 91 NA promoter-TSS (NM_001007025) promoter-TSS (NM_001007025) 38 NM_004871 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 561_WT_peak_1003 chr10 62537911 62538199 + 91 NA promoter-TSS (NM_001786) promoter-TSS (NM_001786) -34 NM_001170406 983 Hs.732435 NM_001786 HPRD:00302 CDK1 CDC2|CDC28A|P34CDC2 cyclin-dependent kinase 1 protein-coding 561_WT_peak_1541 chr12 510692 510915 + 91 NA promoter-TSS (NM_001130146) promoter-TSS (NM_001130146) 62 NM_001130146 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 561_WT_peak_1510 chr11 121353150 121353362 + 91 NA intron (NM_003105, intron 3 of 47) intron (NM_003105, intron 3 of 47) 30344 NM_003105 6653 Hs.368592 NM_003105 HPRD:03595 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin-related receptor, L(DLR class) A repeats containing protein-coding 561_WT_peak_5647 chr4 185458809 185459026 + 91 NA Intergenic MER2|DNA|TcMar-Tigger -63191 NM_002199 3660 Hs.654566 NM_002199 HPRD:00962 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 561_WT_peak_522 chr1 151227259 151227452 + 91 NA intron (NM_002810, intron 1 of 9) intron (NM_002810, intron 1 of 9) 158 NM_002810 5710 Hs.505059 NM_002810 HPRD:03386 PSMD4 AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 protein-coding 561_WT_peak_6082 chr6 3068858 3069089 + 91 NA Intergenic CpG -8085 NM_003804 8737 Hs.519842 NM_003804 HPRD:04583 RIPK1 RIP|RIP1 receptor (TNFRSF)-interacting serine-threonine kinase 1 protein-coding 561_WT_peak_2933 chr16 85969868 85970278 + 91 NA Intergenic Intergenic 18120 NR_106832 102466732 NR_106832 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 561_WT_peak_5332 chr3 179041250 179041478 + 91 NA promoter-TSS (NM_016331) promoter-TSS (NM_016331) -187 NM_016331 51193 Hs.632578 NM_016331 HPRD:15882 ZNF639 6230400O18Rik|ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 561_WT_peak_6228 chr6 27834281 27835466 + 91 NA exon (NM_005322, exon 1 of 1) exon (NM_005322, exon 1 of 1) 486 NM_005322 3009 Hs.131956 NM_005322 HPRD:00821 HIST1H1B H1|H1.5|H1B|H1F5|H1s-3 histone cluster 1, H1b protein-coding 561_WT_peak_3723 chr19 35167777 35168210 + 91 NA promoter-TSS (NM_001289187) promoter-TSS (NM_001289187) -551 NM_001289185 55900 Hs.436350 NM_018443 HPRD:15765 ZNF302 HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327 zinc finger protein 302 protein-coding 561_WT_peak_3573 chr19 2819748 2819966 + 91 NA promoter-TSS (NM_001102651) promoter-TSS (NM_001102651) -15 NM_001102651 115196 Hs.307043 NM_152303 ZNF554 - zinc finger protein 554 protein-coding 561_WT_peak_5067 chr3 40498472 40498692 + 91 NA promoter-TSS (NM_003973) promoter-TSS (NM_003973) -201 NM_003973 9045 Hs.446522 NM_003973 HPRD:10617 RPL14 CAG-ISL-7|CTG-B33|L14|RL14|hRL14 ribosomal protein L14 protein-coding 561_WT_peak_1706 chr12 53400229 53400540 + 91 NA intron (NM_001417, intron 1 of 14) CpG 342 NM_001300821 1975 Hs.648394 NM_001417 HPRD:04892 EIF4B EIF-4B|PRO1843 eukaryotic translation initiation factor 4B protein-coding 561_WT_peak_2857 chr16 57643693 57644042 + 91 NA Intergenic Intergenic -9738 NM_001290142 9289 Hs.513633 NM_005682 HPRD:06824 GPR56 BFPP|BPPR|TM7LN4|TM7XN1 G protein-coupled receptor 56 protein-coding 561_WT_peak_1199 chr11 8703977 8704521 + 91 NA 5' UTR (NM_000990, exon 1 of 5) 5' UTR (NM_000990, exon 1 of 5) 254 NM_000990 6157 Hs.523463 NM_000990 HPRD:04701 RPL27A L27A ribosomal protein L27a protein-coding 561_WT_peak_3401 chr17 80476936 80477234 + 91 NA promoter-TSS (NM_004514) promoter-TSS (NM_004514) -509 NM_004514 3607 Hs.591140 NM_004514 HPRD:00982 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 561_WT_peak_688 chr1 203764679 203765077 + 91 NA 5' UTR (NM_014827, exon 1 of 20) 5' UTR (NM_014827, exon 1 of 20) 127 NM_014827 9877 Hs.532399 NM_014827 HPRD:11100 ZC3H11A ZC3HDC11A zinc finger CCCH-type containing 11A protein-coding 561_WT_peak_2514 chr15 64915106 64915322 + 90 NA exon (NM_015042, exon 2 of 9) exon (NM_015042, exon 2 of 9) 80266 NM_001301302 4947 Hs.744924 NM_002537 HPRD:11966 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 561_WT_peak_6936 chr8 19354454 19354881 + 90 NA intron (NR_024040, intron 3 of 9) L1MCc|LINE|L1 105389 NM_001130518 55790 Hs.613729 NM_018371 HPRD:13114 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 561_WT_peak_1778 chr12 76477983 76478402 + 90 NA intron (NM_139207, intron 1 of 15) CpG 546 NM_139207 4673 Hs.524599 NM_004537 HPRD:01248 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1-like 1 protein-coding 561_WT_peak_4819 chr21 47706020 47706303 + 90 NA promoter-TSS (NM_058181) promoter-TSS (NM_058181) -106 NM_058181 54059 Hs.474066 NM_058181 HPRD:10754 YBEY C21orf57 ybeY metallopeptidase (putative) protein-coding 561_WT_peak_7077 chr8 98656423 98656880 + 90 NA 5' UTR (NM_178812, exon 1 of 12) 5' UTR (NM_178812, exon 1 of 12) 244 NM_178812 92140 Hs.377155 NM_178812 HPRD:17459 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 561_WT_peak_6925 chr8 2049720 2049946 + 90 NA intron (NM_003970, intron 20 of 36) intron (NM_003970, intron 20 of 36) 25164 NR_106983 102465695 NR_106983 MIR7160 hsa-mir-7160 microRNA 7160 ncRNA 561_WT_peak_5284 chr3 149530315 149530865 + 90 NA 5' UTR (NM_007282, exon 1 of 11) 5' UTR (NM_007282, exon 1 of 11) 115 NM_183381 11342 Hs.12333 NM_007282 HPRD:11503 RNF13 RZF ring finger protein 13 protein-coding 561_WT_peak_5927 chr5 134181807 134181998 + 90 NA 5' UTR (NM_001135586, exon 1 of 2) 5' UTR (NM_001135586, exon 1 of 2) 244 NM_001135586 134553 Hs.708536 NM_152409 HPRD:08226 C5orf24 - chromosome 5 open reading frame 24 protein-coding 561_WT_peak_5498 chr4 71705476 71705692 + 90 NA promoter-TSS (NM_002092) promoter-TSS (NM_002092) 43 NM_002092 2926 Hs.309763 NM_002092 HPRD:07276 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 561_WT_peak_3120 chr17 33307921 33308320 + 90 NA intron (NM_002311, intron 1 of 19) CpG 603 NM_013975 3980 Hs.100299 NM_002311 HPRD:02966 LIG3 LIG2 ligase III, DNA, ATP-dependent protein-coding 561_WT_peak_4752 chr21 26934041 26934308 + 90 NA promoter-TSS (NR_001458) promoter-TSS (NR_001458) -283 NR_001458 114614 Hs.697120 NR_001458 ENSG00000234883 MIR155HG BIC|MIRHG2|NCRNA00172 MIR155 host gene (non-protein coding) ncRNA 561_WT_peak_5693 chr5 36876643 36876868 + 90 NA promoter-TSS (NM_133433) promoter-TSS (NM_133433) 41 NR_046262 646719 Hs.355684 NR_046262 LOC646719 - uncharacterized LOC646719 ncRNA 561_WT_peak_4478 chr2 220119611 220119777 + 90 NA promoter-TSS (NM_001278552) promoter-TSS (NM_001278552) -364 NM_001278552 7277 Hs.75318 NM_006000 HPRD:01851 TUBA4A H2-ALPHA|TUBA1 tubulin, alpha 4a protein-coding 561_WT_peak_4952 chr22 42486933 42487378 + 90 NA promoter-TSS (NM_002490) promoter-TSS (NM_002490) 218 NR_034118 100132273 Hs.709677 NR_034118 ENSG00000237037 NDUFA6-AS1 - NDUFA6 antisense RNA 1 (head to head) ncRNA 561_WT_peak_7056 chr8 74433017 74433244 + 90 NA intron (NM_001164381, intron 12 of 13) MLT1L|LTR|ERVL-MaLR 100821 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 561_WT_peak_7248 chr9 35072181 35072504 + 90 NA exon (NM_007126, exon 1 of 17) exon (NM_007126, exon 1 of 17) 397 NM_007126 7415 Hs.529782 NM_007126 HPRD:03013 VCP ALS14|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97 valosin containing protein protein-coding 561_WT_peak_2757 chr16 28874336 28874404 + 90 NA promoter-TSS (NM_001145795) promoter-TSS (NM_001145795) -708 NM_001145795 25970 Hs.15744 NM_015503 HPRD:12336 SH2B1 PSM|SH2B SH2B adaptor protein 1 protein-coding 561_WT_peak_3421 chr18 3604883 3605079 + 90 NA intron (NR_119377, intron 1 of 2) intron (NR_119377, intron 1 of 2) 1246 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 561_WT_peak_1552 chr12 3861949 3862208 + 90 NA intron (NM_032680, intron 1 of 10) CpG 288 NM_001144958 84766 Hs.504534 NM_032680 HPRD:10079 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 561_WT_peak_4478-2 chr2 220119280 220119461 + 90 NA promoter-TSS (NM_001278552) promoter-TSS (NM_001278552) -40 NM_001278552 7277 Hs.75318 NM_006000 HPRD:01851 TUBA4A H2-ALPHA|TUBA1 tubulin, alpha 4a protein-coding 561_WT_peak_2102 chr13 111806085 111806318 + 90 NA promoter-TSS (NR_120398) promoter-TSS (NR_120398) 140 NM_003899 8874 Hs.508738 NM_003899 HPRD:05688 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor (GEF) 7 protein-coding 561_WT_peak_3181 chr17 40440869 40441085 + 90 NA intron (NM_001288719, intron 1 of 17) CpG 903 NM_001288720 6776 Hs.437058 NM_003152 HPRD:03301 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 561_WT_peak_133 chr1 27463770 27463829 + 90 NA intron (NM_003047, intron 1 of 11) MIR3|SINE|MIR 17822 NR_046474 6548 Hs.91389 NM_003047 HPRD:00123 SLC9A1 APNH|NHE-1|NHE1|PPP1R143 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 protein-coding 561_WT_peak_1663 chr12 46384212 46384682 + 90 NA promoter-TSS (NM_004719) promoter-TSS (NM_004719) -46 NM_004719 9169 Hs.210367 NM_004719 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD-associated factor 11 protein-coding 561_WT_peak_718 chr1 209958086 209958266 + 90 NA promoter-TSS (NM_152485) promoter-TSS (NM_152485) -286 NM_152485 148304 Hs.497642 NM_152485 HPRD:08682 C1orf74 - chromosome 1 open reading frame 74 protein-coding 561_WT_peak_6295 chr6 33281633 33281839 + 90 NA TTS (NM_001145338).3 TTS (NM_001145338).3 428 NM_172209 6892 Hs.370937 NM_003190 HPRD:09061 TAPBP NGS17|TAPA|TPN|TPSN TAP binding protein (tapasin) protein-coding 561_WT_peak_556 chr1 156097038 156097208 + 90 NA intron (NM_001282624, intron 2 of 10) intron (NM_001282624, intron 2 of 10) 1215 NM_001257374 4000 Hs.594444 NM_005572 HPRD:01035 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1 lamin A/C protein-coding 561_WT_peak_2380 chr14 103021532 103021789 + 90 NA Intergenic CpG 15679 NR_036192 100422954 NR_036192 miRBase:MI0015837 MIR4309 - microRNA 4309 ncRNA 561_WT_peak_5506 chr4 77910602 77910778 + 90 NA intron (NM_018243, intron 1 of 9) intron (NM_018243, intron 1 of 9) 39795 NM_018243 55752 Hs.128199 NM_018243 HPRD:08555 SEPT11 - septin 11 protein-coding 561_WT_peak_2038 chr13 48668969 48669429 + 90 NA promoter-TSS (NM_014166) promoter-TSS (NM_014166) 78 NM_014166 29079 Hs.181112 NM_014166 HPRD:16145 MED4 ARC36|DRIP36|HSPC126|TRAP36|VDRIP mediator complex subunit 4 protein-coding 561_WT_peak_2454 chr15 44069618 44069835 + 90 NA promoter-TSS (NM_025165) promoter-TSS (NM_025165) -224 NM_025165 80237 Hs.706346 NM_025165 HPRD:10933 ELL3 - elongation factor RNA polymerase II-like 3 protein-coding 561_WT_peak_3520 chr18 60829079 60829392 + 90 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 157378 NM_000633 596 Hs.150749 NM_000633 HPRD:01045 BCL2 Bcl-2|PPP1R50 B-cell CLL/lymphoma 2 protein-coding 561_WT_peak_2860 chr16 58163055 58163381 + 90 NA promoter-TSS (NM_013242) promoter-TSS (NM_013242) 78 NM_013242 29105 Hs.532755 NM_013242 HPRD:13616 CFAP20 C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 561_WT_peak_1727 chr12 56552100 56552344 + 90 NA TTS (NM_002475) TTS (NM_002475) 177 NM_079423 4637 Hs.632717 NM_021019 HPRD:17618 MYL6 ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM myosin, light chain 6, alkali, smooth muscle and non-muscle protein-coding 561_WT_peak_1042 chr10 74020884 74021269 + 90 NA Intergenic Intergenic -12601 NM_019058 54541 Hs.744875 NM_019058 HPRD:09662 DDIT4 Dig2|REDD-1|REDD1 DNA-damage-inducible transcript 4 protein-coding 561_WT_peak_6938 chr8 21455989 21456184 + 90 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA 190260 NM_001495 2675 Hs.441202 NM_001495 HPRD:11801 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 561_WT_peak_7021 chr8 54755630 54756079 + 90 NA promoter-TSS (NM_213620) promoter-TSS (NM_213620) 17 NM_015941 51606 Hs.491737 NM_015941 HPRD:10591 ATP6V1H MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H protein-coding 561_WT_peak_5765 chr5 60457981 60458449 + 90 NA promoter-TSS (NM_001048249) promoter-TSS (NM_001048249) 72 NR_109908 101928630 Hs.575209 NR_109908 CTC-436P18.1 - uncharacterized LOC101928630 ncRNA 561_WT_peak_2697 chr16 11326865 11327369 + 90 NA Intergenic CpG 22922 NM_003745 8651 Hs.50640 NM_003745 HPRD:04669 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 561_WT_peak_6239 chr6 28697035 28697205 + 90 NA Intergenic tRNA-Ala-GCY_|tRNA|tRNA 134334 NR_033379 401242 Hs.448285 NR_033379 ENSG00000225595 LOC401242 - uncharacterized LOC401242 ncRNA 561_WT_peak_2968 chr17 1359283 1359669 + 90 NA promoter-TSS (NM_005206) promoter-TSS (NM_005206) 85 NM_016823 1398 Hs.461896 NM_005206 HPRD:01267 CRK CRKII|p38 v-crk avian sarcoma virus CT10 oncogene homolog protein-coding 561_WT_peak_6376 chr6 76311242 76311503 + 90 NA promoter-TSS (NM_015571) promoter-TSS (NM_015571) -250 NM_015571 26054 Hs.485784 NM_015571 HPRD:05417 SENP6 SSP1|SUSP1 SUMO1/sentrin specific peptidase 6 protein-coding 561_WT_peak_2241 chr14 61447463 61447920 + 90 NA promoter-TSS (NM_001172702) promoter-TSS (NM_001172702) 106 NM_020810 57570 Hs.380159 NM_020810 HPRD:17213 TRMT5 KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 561_WT_peak_4820 chr21 47744123 47744368 + 90 NA promoter-TSS (NM_058180) promoter-TSS (NM_058180) 209 NM_006031 5116 Hs.474069 NM_006031 HPRD:05804 PCNT KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4 pericentrin protein-coding 561_WT_peak_3635 chr19 12833201 12833681 + 89 NA promoter-TSS (NM_013433) promoter-TSS (NM_013433) 21 NM_001136196 30000 Hs.416049 NM_013433 ENSG00000105576 TNPO2 IPO3|KPNB2B|TRN2 transportin 2 protein-coding 561_WT_peak_4684 chr20 50017091 50017363 + 89 NA intron (NM_001258296, intron 9 of 10) intron (NM_001258296, intron 9 of 10) 52287 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 561_WT_peak_4664 chr20 47538320 47538628 + 89 NA exon (NM_006420, exon 1 of 39) exon (NM_006420, exon 1 of 39) 199 NM_006420 10564 Hs.62578 NM_006420 HPRD:09250 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) protein-coding 561_WT_peak_3477 chr18 29665310 29665487 + 89 NA Intergenic AluSq2|SINE|Alu -6420 NM_016271 51444 Hs.302408 NM_016271 HPRD:11508 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138, E3 ubiquitin protein ligase protein-coding 561_WT_peak_5457 chr4 40202711 40202928 + 89 NA intron (NM_001278362, intron 2 of 3) intron (NM_001278362, intron 2 of 3) 4292 NM_001278363 399 Hs.654594 NM_004310 RHOH ARHH|TTF ras homolog family member H protein-coding 561_WT_peak_6648 chr7 41921267 41921731 + 89 NA Intergenic Arthur1B|DNA|hAT-Tip100 -178793 NM_002192 3624 Hs.583348 NM_002192 INHBA EDF|FRP inhibin, beta A protein-coding 561_WT_peak_5709 chr5 40798026 40798287 + 89 NA intron (NM_206907, intron 1 of 9) CpG 141 NM_206907 5562 Hs.43322 NM_006251 HPRD:04115 PRKAA1 AMPK|AMPKa1 protein kinase, AMP-activated, alpha 1 catalytic subunit protein-coding 561_WT_peak_6688 chr7 65958775 65958970 + 89 NA Intergenic CpG -93477 NR_026873 285908 Hs.50755 NM_181722 HPRD:14160 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 561_WT_peak_6781 chr7 100888025 100888237 + 89 NA intron (NM_016068, intron 1 of 4) CpG 240 NM_016068 51024 Hs.423968 NM_016068 HPRD:12352 FIS1 TTC11 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) protein-coding 561_WT_peak_6979 chr8 37756652 37756967 + 89 NA exon (NM_025151, exon 1 of 5) exon (NM_025151, exon 1 of 5) 206 NM_025151 80223 Hs.191179 NM_025151 HPRD:09787 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 (class I) protein-coding 561_WT_peak_5397 chr4 2470217 2470539 + 89 NA promoter-TSS (NM_002938) promoter-TSS (NM_002938) -417 NM_001185010 6047 Hs.66394 NM_002938 HPRD:04167 RNF4 SLX5|SNURF ring finger protein 4 protein-coding 561_WT_peak_1309 chr11 61159894 61160227 + 89 NA 5' UTR (NM_016499, exon 1 of 5) 5' UTR (NM_016499, exon 1 of 5) 195 NM_016499 51259 Hs.26745 NM_016499 HPRD:14439 TMEM216 - transmembrane protein 216 protein-coding 561_WT_peak_3568 chr19 2269394 2269753 + 89 NA promoter-TSS (NM_004152) promoter-TSS (NM_004152) 88 NM_004152 4946 Hs.446427 NM_004152 HPRD:03346 OAZ1 AZI|OAZ ornithine decarboxylase antizyme 1 protein-coding 561_WT_peak_5586 chr4 120375408 120375989 + 89 NA promoter-TSS (NR_037630) promoter-TSS (NR_037630) -240 NR_037630 645513 Hs.677546 NR_037630 ENSG00000245958 LOC645513 - uncharacterized LOC645513 ncRNA 561_WT_peak_4976 chr22 50964739 50964989 + 89 NA promoter-TSS (NM_005138) promoter-TSS (NM_005138) 4 NM_001169109 9997 Hs.180903 NM_005138 HPRD:05042 SCO2 CEMCOX1|MYP6|SCO1L SCO2 cytochrome c oxidase assembly protein protein-coding 561_WT_peak_4007 chr2 28582452 28582725 + 89 NA Intergenic Intergenic -33191 NM_005253 2355 Hs.220971 NM_005253 FOSL2 FRA2 FOS-like antigen 2 protein-coding 561_WT_peak_54 chr1 10490344 10490613 + 89 NA promoter-TSS (NR_037187) promoter-TSS (NR_037187) 319 NM_199294 378708 Hs.412311 NM_199294 APITD1 CENP-S|CENPS|FAAP16|MHF1 apoptosis-inducing, TAF9-like domain 1 protein-coding 561_WT_peak_1599 chr12 12161254 12161535 + 89 NA Intergenic Intergenic -62484 NM_138723 79370 Hs.210343 NM_030766 HPRD:05841 BCL2L14 BCLG BCL2-like 14 (apoptosis facilitator) protein-coding 561_WT_peak_6671 chr7 54826964 54827264 + 89 NA promoter-TSS (NM_014302) promoter-TSS (NM_014302) 108 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 561_WT_peak_526 chr1 151735942 151736167 + 89 NA promoter-TSS (NM_001301371) promoter-TSS (NM_001301371) 98 NM_001301371 51686 Hs.713789 NM_016178 HPRD:18670 OAZ3 AZ3|OAZ-t|TISP15 ornithine decarboxylase antizyme 3 protein-coding 561_WT_peak_3001 chr17 5323331 5323695 + 89 NA promoter-TSS (NM_002532) promoter-TSS (NM_002532) -454 NM_002532 4927 Hs.584784 NM_002532 HPRD:03974 NUP88 - nucleoporin 88kDa protein-coding 561_WT_peak_1498 chr11 118175238 118175684 + 89 NA 5' UTR (NM_000733, exon 1 of 9) 5' UTR (NM_000733, exon 1 of 9) 166 NM_000733 916 Hs.3003 NM_000733 HPRD:08923 CD3E IMD18|T3E|TCRE CD3e molecule, epsilon (CD3-TCR complex) protein-coding 561_WT_peak_6392 chr6 89855794 89856379 + 89 NA exon (NM_001010853, exon 1 of 7) exon (NM_001010853, exon 1 of 7) 317 NM_001010853 135293 Hs.356247 NM_001010853 HPRD:16473 PM20D2 ACY1L2|bA63L7.3 peptidase M20 domain containing 2 protein-coding 561_WT_peak_1464 chr11 102187792 102188090 + 89 NA promoter-TSS (NM_001165) promoter-TSS (NM_001165) -240 NM_182962 330 Hs.127799 NM_001165 HPRD:03426 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 561_WT_peak_6352 chr6 53409450 53409879 + 89 NA 5' UTR (NM_001498, exon 1 of 16) 5' UTR (NM_001498, exon 1 of 16) 263 NM_001197115 2729 Hs.654465 NM_001498 HPRD:06032 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase, catalytic subunit protein-coding 561_WT_peak_1176 chr11 191986 192178 + 89 NA promoter-TSS (NM_145651) promoter-TSS (NM_145651) -998 NM_001097610 653486 Hs.127059 NM_001097610 LOC653486 - secretoglobin, family 1C, member 1-like protein-coding 561_WT_peak_5556 chr4 99584308 99584577 + 89 NA Intergenic MLT1L|LTR|ERVL-MaLR -4630 NM_005723 10098 Hs.118118 NM_005723 HPRD:15513 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 561_WT_peak_2216 chr14 54907915 54908312 + 89 NA promoter-TSS (NM_005776) promoter-TSS (NM_005776) 35 NM_005776 10175 Hs.294603 NM_005776 HPRD:16730 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 561_WT_peak_741 chr1 224179973 224180246 + 89 NA Intergenic Intergenic -121680 NR_049764 23219 Hs.64691 NM_015176 HPRD:12367 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 561_WT_peak_551 chr1 155657945 155658666 + 89 NA promoter-TSS (NM_004632) promoter-TSS (NM_004632) 142 NM_001198904 55249 Hs.584927 NM_018253 HPRD:08485 YY1AP1 HCCA1|HCCA2|YAP|YY1AP YY1 associated protein 1 protein-coding 561_WT_peak_7030 chr8 59720654 59720847 + 89 NA exon (NM_014729, exon 8 of 9) exon (NM_014729, exon 8 of 9) -148346 NM_003580 8439 Hs.372000 NM_003580 HPRD:09117 NSMAF FAN neutral sphingomyelinase (N-SMase) activation associated factor protein-coding 561_WT_peak_7462 chr9 133588418 133588745 + 89 NA promoter-TSS (NM_007313) promoter-TSS (NM_007313) -687 NM_007313 25 Hs.431048 NM_005157 HPRD:01809 ABL1 ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 561_WT_peak_856 chr10 4868468 4868713 + 89 NA intron (NM_001271021, intron 1 of 7) CpG 221 NM_001040177 83592 Hs.657944 NM_031436 HPRD:07472 AKR1E2 AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR aldo-keto reductase family 1, member E2 protein-coding 561_WT_peak_6903 chr7 151047291 151047532 + 89 NA intron (NM_016118, intron 3 of 14) LTR13|LTR|ERVK 8564 NM_001243351 51667 Hs.647082 NM_016118 HPRD:07450 NUB1 BS4|NUB1L|NYREN18 negative regulator of ubiquitin-like proteins 1 protein-coding 561_WT_peak_3878 chr19 52407992 52408288 + 89 NA intron (NM_023074, intron 1 of 4) intron (NM_023074, intron 1 of 4) 165 NM_023074 65251 Hs.148322 NM_023074 HPRD:07785 ZNF649 - zinc finger protein 649 protein-coding 561_WT_peak_2565 chr15 78557205 78557394 + 89 NA intron (NM_018602, intron 2 of 7) CpG 310 NM_001130182 55466 Hs.513053 NM_018602 HPRD:09920 DNAJA4 MST104|MSTP104|PRO1472 DnaJ (Hsp40) homolog, subfamily A, member 4 protein-coding 561_WT_peak_4939 chr22 41809326 41809901 + 89 NA Intergenic CpG 31680 NM_003216 7008 Hs.181159 NM_003216 HPRD:01783 TEF - thyrotrophic embryonic factor protein-coding 561_WT_peak_3012 chr17 7209940 7210321 + 89 NA promoter-TSS (NM_001970) promoter-TSS (NM_001970) -188 NM_001143760 1984 Hs.534314 NM_001970 HPRD:02555 EIF5A EIF-5A|EIF5A1|eIF5AI eukaryotic translation initiation factor 5A protein-coding 561_WT_peak_2759 chr16 28936798 28937057 + 89 NA promoter-TSS (NM_024816) promoter-TSS (NM_024816) -395 NM_024816 79874 Hs.555978 NM_024816 HPRD:17948 RABEP2 FRA rabaptin, RAB GTPase binding effector protein 2 protein-coding 561_WT_peak_4181 chr2 86947062 86947439 + 89 NA promoter-TSS (NM_022780) promoter-TSS (NM_022780) -164 NM_022780 64795 Hs.75277 NM_022780 HPRD:07841 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A (S. cerevisiae) protein-coding 561_WT_peak_3429 chr18 9117353 9117642 + 89 NA intron (NM_021074, intron 1 of 7) intron (NM_021074, intron 1 of 7) 14869 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 561_WT_peak_4322 chr2 145274748 145275191 + 89 NA non-coding (NR_033258, exon 2 of 3) non-coding (NR_033258, exon 2 of 3) -2212 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 561_WT_peak_1823 chr12 99038365 99038661 + 89 NA promoter-TSS (NM_001160) promoter-TSS (NM_001160) 316 NM_153687 121457 Hs.252543 NM_153687 HPRD:08092 IKBIP IKIP IKBKB interacting protein protein-coding 561_WT_peak_7104 chr8 103876705 103877046 + 89 NA promoter-TSS (NM_148174) promoter-TSS (NM_148174) -478 NM_015878 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 561_WT_peak_3499 chr18 47013559 47013847 + 89 NA promoter-TSS (NR_031720) promoter-TSS (NR_031720) -40 NR_031720 100302257 NR_031720 miRBase:MI0007260 MIR1539 MIRN1539|hsa-mir-1539 microRNA 1539 ncRNA 561_WT_peak_7047 chr8 67973985 67974323 + 89 NA exon (NM_006837, exon 1 of 8) exon (NM_006837, exon 1 of 8) 408 NM_006837 10987 Hs.491912 NM_006837 HPRD:06888 COPS5 CSN5|JAB1|MOV-34|SGN5 COP9 signalosome subunit 5 protein-coding 561_WT_peak_5450 chr4 39355384 39355817 + 89 NA intron (NM_002913, intron 1 of 24) intron (NM_002913, intron 1 of 24) 12401 NM_001204747 5981 Hs.507475 NM_002913 HPRD:00024 RFC1 A1|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C (activator 1) 1, 145kDa protein-coding 561_WT_peak_1823-2 chr12 99038768 99038803 + 89 NA promoter-TSS (NM_001160) promoter-TSS (NM_001160) 44 NM_153687 121457 Hs.252543 NM_153687 HPRD:08092 IKBIP IKIP IKBKB interacting protein protein-coding 561_WT_peak_1278 chr11 47788268 47788740 + 89 NA intron (NM_015308, intron 1 of 16) CpG 489 NM_015308 23360 Hs.6834 NM_015308 HPRD:10996 FNBP4 FBP30 formin binding protein 4 protein-coding 561_WT_peak_335 chr1 98854166 98854277 + 89 NA Intergenic Intergenic 177954 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LOC729987 - uncharacterized LOC729987 ncRNA 561_WT_peak_2242 chr14 61747501 61747671 + 89 NA exon (NM_001017970, exon 1 of 1) exon (NM_001017970, exon 1 of 1) 944 NM_001017970 161291 Hs.146180 NM_001017970 HPRD:18567 TMEM30B CDC50B transmembrane protein 30B protein-coding 561_WT_peak_1377 chr11 66024732 66025086 + 89 NA promoter-TSS (NM_001134774) promoter-TSS (NM_001134774) 144 NM_001134775 64837 Hs.280792 NM_022822 HPRD:13917 KLC2 - kinesin light chain 2 protein-coding 561_WT_peak_3982 chr2 24583224 24583765 + 89 NA promoter-TSS (NM_147152) promoter-TSS (NM_147152) -97 NM_006277 50618 Hs.432562 NM_006277 HPRD:09193 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 561_WT_peak_3104 chr17 28659188 28659565 + 89 NA intron (NM_206832, intron 1 of 6) intron (NM_206832, intron 1 of 6) 1689 NM_206832 388364 Hs.371005 NM_206832 HPRD:18274 TMIGD1 TMIGD|UNQ9372 transmembrane and immunoglobulin domain containing 1 protein-coding 561_WT_peak_5684 chr5 34008426 34008611 + 89 NA promoter-TSS (NM_203382) promoter-TSS (NM_203382) -298 NM_014324 23600 Hs.508343 NM_014324 HPRD:05134 AMACR AMACRD|CBAS4|RACE|RM alpha-methylacyl-CoA racemase protein-coding 561_WT_peak_1173 chr10 135462597 135462891 + 89 NA Intergenic Intergenic -22445 NM_001080998 441581 Hs.690471 NM_001080998 ENSG00000225899 FRG2B - FSHD region gene 2 family, member B protein-coding 561_WT_peak_2683 chr16 4588841 4589095 + 89 NA promoter-TSS (NM_013399) promoter-TSS (NM_013399) -152 NM_001199056 29965 Hs.654653 NM_013399 HPRD:12676 CDIP1 C16orf5|CDIP|I1|LITAFL cell death-inducing p53 target 1 protein-coding 561_WT_peak_100 chr1 23670598 23670797 + 89 NA intron (NM_001297620, intron 1 of 9) CpG 160 NM_001102398 10236 Hs.373763 NM_005826 HPRD:06228 HNRNPR HNRPR|hnRNP-R heterogeneous nuclear ribonucleoprotein R protein-coding 561_WT_peak_617 chr1 171711300 171711653 + 89 NA promoter-TSS (NM_003762) promoter-TSS (NM_003762) -97 NM_003762 8674 Hs.6651 NM_003762 HPRD:06070 VAMP4 VAMP-4|VAMP24 vesicle-associated membrane protein 4 protein-coding 561_WT_peak_1964 chr13 26760459 26760652 + 88 NA Intergenic CpG 35339 NM_183044 6049 Hs.136885 NM_005977 HPRD:05027 RNF6 - ring finger protein (C3H2C3 type) 6 protein-coding 561_WT_peak_6816 chr7 107384655 107384916 + 88 NA intron (NM_001284291, intron 1 of 5) CpG 643 NR_024199 79872 Hs.592271 NM_024814 HPRD:07590 CBLL1 HAKAI|RNF188 Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase protein-coding 561_WT_peak_7505 chrX 14048178 14048277 + 88 NA promoter-TSS (NM_001042480) promoter-TSS (NM_001042480) -192 NM_001042480 54960 Hs.592237 NM_017856 HPRD:06533 GEMIN8 FAM51A1 gem (nuclear organelle) associated protein 8 protein-coding 561_WT_peak_5561 chr4 100777399 100777573 + 88 NA intron (NM_014395, intron 4 of 8) L2a|LINE|L2 38217 NR_024170 8649 Hs.433332 NM_021970 HPRD:04485 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 561_WT_peak_2215 chr14 53619756 53619939 + 88 NA promoter-TSS (NR_110062) promoter-TSS (NR_110062) 199 NM_001160147 80821 Hs.125525 NM_030637 HPRD:07482 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 561_WT_peak_5069 chr3 40566450 40566797 + 88 NA 5' UTR (NM_198484, exon 1 of 5) 5' UTR (NM_198484, exon 1 of 5) 254 NM_001098414 285268 Hs.19977 NM_198484 ZNF621 - zinc finger protein 621 protein-coding 561_WT_peak_5952 chr5 138940908 138941313 + 88 NA 5' UTR (NM_003339, exon 1 of 7) 5' UTR (NM_003339, exon 1 of 7) 359 NM_181838 7322 Hs.108332 NM_003339 HPRD:04268 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin-conjugating enzyme E2D 2 protein-coding 561_WT_peak_4424 chr2 198380458 198380768 + 88 NA promoter-TSS (NM_015387) promoter-TSS (NM_015387) -154 NM_001100819 25843 Hs.633165 NM_015387 HPRD:10165 MOB4 2C4D|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 561_WT_peak_1548 chr12 1905450 1905883 + 88 NA intron (NM_172364, intron 35 of 37) CpG -23767 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine-rich repeats and transmembrane domains 2 protein-coding 561_WT_peak_950 chr10 35416369 35416566 + 88 NA promoter-TSS (NM_183060) promoter-TSS (NM_183060) 82 NM_181571 1390 Hs.200250 NM_001881 HPRD:00444 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 561_WT_peak_3166 chr17 38252217 38252651 + 88 NA intron (NM_021724, intron 4 of 7) intron (NM_021724, intron 4 of 7) 4544 NM_021724 9572 Hs.724 NM_021724 HPRD:03873 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1, group D, member 1 protein-coding 561_WT_peak_6015 chr5 170815525 170815816 + 88 NA intron (NM_001037738, intron 1 of 9) intron (NM_001037738, intron 1 of 9) 962 NM_199185 4869 Hs.557550 NM_002520 HPRD:01246 NPM1 B23|NPM nucleophosmin (nucleolar phosphoprotein B23, numatrin) protein-coding 561_WT_peak_7225 chr9 19999538 19999736 + 88 NA Intergenic Intergenic -212620 NM_020344 25769 Hs.283014 NM_020344 HPRD:15351 SLC24A2 NCKX2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding 561_WT_peak_864 chr10 6094630 6094873 + 88 NA intron (NM_000417, intron 1 of 7) intron (NM_000417, intron 1 of 7) 9582 NM_000417 3559 Hs.231367 NM_000417 HPRD:00986 IL2RA CD25|IDDM10|IL2R|TCGFR|p55 interleukin 2 receptor, alpha protein-coding 561_WT_peak_6375 chr6 75953264 75953674 + 88 NA non-coding (NR_029466, exon 1 of 4) non-coding (NR_029466, exon 1 of 4) 175 NM_001865 1347 Hs.70312 NM_001865 HPRD:00482 COX7A2 COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL cytochrome c oxidase subunit VIIa polypeptide 2 (liver) protein-coding 561_WT_peak_453 chr1 146373513 146373549 + 88 NA promoter-TSS (NM_001278141) promoter-TSS (NM_001278141) -326 NM_001278141 149013 Hs.666981 NM_001278141 ENSG00000186275 NBPF12 COAS1|KIAA1245 neuroblastoma breakpoint family, member 12 protein-coding 561_WT_peak_2700 chr16 12629988 12630214 + 88 NA intron (NM_032167, intron 20 of 20) intron (NM_032167, intron 20 of 20) -184077 NR_039869 100616195 NR_039869 miRBase:MI0017353 MIR4718 - microRNA 4718 ncRNA 561_WT_peak_4930 chr22 40796255 40796442 + 88 NA intron (NM_015705, intron 1 of 21) intron (NM_015705, intron 1 of 21) 29753 NM_015705 27352 Hs.474914 NM_015705 HPRD:15285 SGSM3 MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5 small G protein signaling modulator 3 protein-coding 561_WT_peak_2718 chr16 20752891 20753191 + 88 NA exon (NM_017736, exon 1 of 4) exon (NM_017736, exon 1 of 4) 158 NM_017736 55623 Hs.700004 NM_017736 HPRD:08619 THUMPD1 - THUMP domain containing 1 protein-coding 561_WT_peak_1076 chr10 86088899 86089311 + 88 NA intron (NM_001284241, intron 1 of 2) intron (NM_001284241, intron 1 of 2) 760 NM_001284241 54462 Hs.461988 NM_018999 HPRD:13832 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine-rich protein 2 protein-coding 561_WT_peak_4297 chr2 130939612 130939791 + 88 NA promoter-TSS (NM_001171083) promoter-TSS (NM_001171083) 200 NM_025029 80097 Hs.469925 NM_025029 HPRD:07857 MZT2B FAM128B|MOZART2B mitotic spindle organizing protein 2B protein-coding 561_WT_peak_4218 chr2 97073249 97073518 + 88 NA Intergenic Intergenic 71904 NM_015341 23397 Hs.308045 NM_015341 HPRD:03820 NCAPH BRRN1|CAP-H non-SMC condensin I complex, subunit H protein-coding 561_WT_peak_6111 chr6 16323063 16323308 + 88 NA intron (NM_001128164, intron 7 of 7) intron (NM_001128164, intron 7 of 7) 84374 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 561_WT_peak_6432 chr6 109761989 109762166 + 88 NA non-coding (NR_104429, exon 1 of 9) non-coding (NR_104429, exon 1 of 9) 146 NM_003080 6610 Hs.55235 NM_003080 HPRD:04608 SMPD2 ISC1|NSMASE|NSMASE1 sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) protein-coding 561_WT_peak_6347 chr6 52849186 52849360 + 88 NA exon (NM_001512, exon 5 of 7) exon (NM_001512, exon 5 of 7) 10905 NM_001512 2941 Hs.485557 NM_001512 HPRD:06899 GSTA4 GSTA4-4|GTA4 glutathione S-transferase alpha 4 protein-coding 561_WT_peak_4537 chr20 414309 414568 + 88 NA Intergenic MER21C|LTR|ERVL 25729 NM_031229 10616 Hs.247280 NM_006462 HPRD:16643 RBCK1 C20orf18|HOIL-1|HOIL1|PBMEI|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4 RanBP-type and C3HC4-type zinc finger containing 1 protein-coding 561_WT_peak_2439 chr15 41407924 41408452 + 88 NA non-coding (NR_104038, exon 1 of 35) non-coding (NR_104038, exon 1 of 35) 256 NR_104038 54617 Hs.292949 NM_017553 HPRD:10024 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 561_WT_peak_2137 chr14 23503751 23504171 + 88 NA exon (NM_002797, exon 1 of 3) exon (NM_002797, exon 1 of 3) 393 NM_001144932 5693 Hs.422990 NM_002797 HPRD:02629 PSMB5 LMPX|MB1|X proteasome (prosome, macropain) subunit, beta type, 5 protein-coding 561_WT_peak_5921 chr5 133861715 133862012 + 88 NA promoter-TSS (NM_015288) promoter-TSS (NM_015288) 65 NM_015288 23338 Hs.732155 NM_015288 HPRD:15124 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 561_WT_peak_5815 chr5 74807574 74807891 + 88 NA promoter-TSS (NM_031361) promoter-TSS (NM_031361) 74 NM_001130105 10087 Hs.270437 NM_005713 HPRD:05246 COL4A3BP CERT|CERTL|GPBP|STARD11 collagen, type IV, alpha 3 (Goodpasture antigen) binding protein protein-coding 561_WT_peak_5948 chr5 138725654 138726007 + 88 NA promoter-TSS (NM_016459) promoter-TSS (NM_016459) -225 NM_016459 51237 Hs.409563 NM_016459 HPRD:17815 MZB1 MEDA-7|PACAP|pERp1 marginal zone B and B1 cell-specific protein protein-coding 561_WT_peak_2522 chr15 66790012 66790296 + 88 NA promoter-TSS (NM_006049) promoter-TSS (NM_006049) -8 NM_006049 10302 Hs.30174 NM_006049 HPRD:16183 SNAPC5 SNAP19 small nuclear RNA activating complex, polypeptide 5, 19kDa protein-coding 561_WT_peak_6990 chr8 41685998 41686255 + 88 NA intron (NM_001142446, intron 1 of 42) CpG -30986 NM_020476 286 Hs.654438 NM_000037 HPRD:01693 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 561_WT_peak_3292 chr17 61516996 61517313 + 88 NA intron (NM_001915, intron 1 of 5) L1ME4a|LINE|L1 1053 NM_001017917 1534 Hs.355264 NM_001915 HPRD:02485 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 561_WT_peak_654 chr1 184859584 184859752 + 88 NA intron (NM_052966, intron 3 of 13) intron (NM_052966, intron 3 of 13) 84050 NM_052966 116496 Hs.518662 NM_052966 HPRD:10725 FAM129A C1orf24|NIBAN family with sequence similarity 129, member A protein-coding 561_WT_peak_3136 chr17 34900810 34901127 + 88 NA intron (NM_024835, intron 1 of 13) CpG 231 NM_024835 79893 Hs.514116 NM_024835 HPRD:18337 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 561_WT_peak_122 chr1 26946784 26947107 + 87 NA Intergenic CpG 65912 NR_031740 100302190 NR_031740 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 561_WT_peak_323 chr1 93003554 93003763 + 87 NA intron (NM_005665, intron 17 of 17) intron (NM_005665, intron 17 of 17) -51225 NM_005263 2672 Hs.73172 NM_005263 HPRD:07527 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcription repressor protein-coding 561_WT_peak_4177 chr2 86412702 86412894 + 87 NA intron (NM_001100170, intron 1 of 14) MLT1G3-int|LTR|ERVL-MaLR 7433 NR_039939 100616159 NR_039939 MIR4779 - microRNA 4779 ncRNA 561_WT_peak_1159 chr10 121355759 121356431 + 87 NA 5' UTR (NM_003252, exon 1 of 12) 5' UTR (NM_003252, exon 1 of 12) 446 NM_001033925 7073 Hs.501203 NM_003252 TIAL1 TCBP|TIAR TIA1 cytotoxic granule-associated RNA binding protein-like 1 protein-coding 561_WT_peak_7285 chr9 70646374 70646605 + 87 NA Intergenic SST1|Satellite|centr -156278 NM_001286836 220869 Hs.355950 NM_001024916 HPRD:14134 CBWD5 DC36 COBW domain containing 5 protein-coding 561_WT_peak_6251 chr6 29691282 29691540 + 87 NA intron (NM_018950, intron 1 of 6).5 CpG 294 NM_001098478 3134 Hs.519972 NM_018950 HPRD:00884 HLA-F CDA12|HLA-5.4|HLA-CDA12|HLAF major histocompatibility complex, class I, F protein-coding 561_WT_peak_4870-2 chr22 29811262 29811318 + 87 NA Intergenic HERVE_a-int|LTR|ERV1 -23282 NM_021026 5988 Hs.648249 NM_021026 HPRD:16182 RFPL1 RNF78 ret finger protein-like 1 protein-coding 561_WT_peak_4203 chr2 95740449 95740763 + 87 NA Intergenic Intergenic 47148 NM_031902 64969 Hs.655259 NM_031902 HPRD:10099 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 561_WT_peak_134 chr1 27985833 27986053 + 87 NA Intergenic MIRc|SINE|MIR 12781 NM_022872 2537 Hs.523847 NM_002038 HPRD:00959 IFI6 6-16|FAM14C|G1P3|IFI-6-16|IFI616 interferon, alpha-inducible protein 6 protein-coding 561_WT_peak_3502 chr18 47339950 47340179 + 87 NA promoter-TSS (NR_117096) promoter-TSS (NR_117096) 187 NM_006111 10449 Hs.200136 NM_006111 HPRD:10380 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 561_WT_peak_39 chr1 6844425 6844653 + 87 NA promoter-TSS (NM_001242701) promoter-TSS (NM_001242701) -845 NM_015215 23261 Hs.397705 NM_015215 HPRD:16681 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 561_WT_peak_6647 chr7 39988842 39989218 + 87 NA promoter-TSS (NM_003718) promoter-TSS (NM_003718) -929 NM_031267 8621 Hs.233552 NM_003718 HPRD:04496 CDK13 CDC2L|CDC2L5|CHED|hCDK13 cyclin-dependent kinase 13 protein-coding 561_WT_peak_1848 chr12 110151221 110151433 + 87 NA promoter-TSS (NM_032829) promoter-TSS (NM_032829) -860 NM_032829 84915 Hs.661785 NM_032829 HPRD:07868 FAM222A C12orf34 family with sequence similarity 222, member A protein-coding 561_WT_peak_4895 chr22 36044244 36044774 + 87 NA promoter-TSS (NM_030641) promoter-TSS (NM_030641) 85 NM_030641 80830 Hs.257352 NM_030641 HPRD:06266 APOL6 APOL-VI|APOLVI apolipoprotein L, 6 protein-coding 561_WT_peak_5628 chr4 159593203 159593477 + 87 NA promoter-TSS (NM_004453) promoter-TSS (NM_004453) 67 NR_077235 201725 Hs.380920 NM_001008393 HPRD:17319 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 561_WT_peak_4571 chr20 17949667 17950125 + 87 NA promoter-TSS (NM_014426) promoter-TSS (NM_014426) 134 NM_052865 92667 Hs.320823 NM_052865 HPRD:12783 MGME1 C20orf72|DDK1|MTDPS11|bA504H3.4 mitochondrial genome maintenance exonuclease 1 protein-coding 561_WT_peak_4989-2 chr3 4892583 4892686 + 87 NA Intergenic Intergenic -47276 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 561_WT_peak_3529 chr18 72040658 72041006 + 87 NA Intergenic Intergenic 57722 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 561_WT_peak_4455 chr2 207024648 207025001 + 87 NA promoter-TSS (NM_001199984) promoter-TSS (NM_001199984) 506 NM_001959 1933 Hs.421608 NM_001959 HPRD:02804 EEF1B2 EEF1B|EEF1B1|EF1B eukaryotic translation elongation factor 1 beta 2 protein-coding 561_WT_peak_7230 chr9 21334986 21335339 + 87 NA 5' UTR (NM_018847, exon 1 of 1) 5' UTR (NM_018847, exon 1 of 1) 267 NM_018847 55958 Hs.701778 NM_018847 KLHL9 - kelch-like family member 9 protein-coding 561_WT_peak_309 chr1 89149948 89150307 + 87 NA 5' UTR (NM_006256, exon 1 of 22) 5' UTR (NM_006256, exon 1 of 22) 205 NM_006256 5586 Hs.440833 NM_006256 HPRD:03972 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 561_WT_peak_1669 chr12 47609410 47609676 + 87 NA intron (NR_026544, intron 2 of 2) intron (NR_026544, intron 2 of 2) 683 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 561_WT_peak_3467 chr18 21591532 21591748 + 87 NA intron (NR_110796, intron 2 of 5) intron (NR_110796, intron 2 of 5) -2744 NM_001135993 125488 Hs.128576 NM_153211 HPRD:08745 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 561_WT_peak_4104 chr2 64880701 64880978 + 87 NA 5' UTR (NM_014755, exon 1 of 2) 5' UTR (NM_014755, exon 1 of 2) 207 NM_014755 9792 Hs.591569 NM_014755 HPRD:18040 SERTAD2 Sei-2|TRIP-Br2 SERTA domain containing 2 protein-coding 561_WT_peak_2995 chr17 4852834 4853241 + 87 NA promoter-TSS (NM_005022) promoter-TSS (NM_005022) -656 NM_005022 5216 Hs.494691 NM_005022 HPRD:01452 PFN1 ALS18 profilin 1 protein-coding 561_WT_peak_4870 chr22 29811099 29811214 + 87 NA Intergenic HERVIP10FH-int|LTR|ERV1 -23416 NM_021026 5988 Hs.648249 NM_021026 HPRD:16182 RFPL1 RNF78 ret finger protein-like 1 protein-coding 561_WT_peak_4561 chr20 5930917 5931109 + 87 NA promoter-TSS (NM_182802) promoter-TSS (NM_182802) 191 NM_001281467 51605 Hs.128791 NM_015939 HPRD:13027 TRMT6 GCD10|Gcd10p tRNA methyltransferase 6 homolog (S. cerevisiae) protein-coding 561_WT_peak_4485 chr2 228189800 228190100 + 87 NA promoter-TSS (NM_001277061) promoter-TSS (NM_001277061) -70 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 561_WT_peak_4989 chr3 4892075 4892266 + 87 NA Intergenic Intergenic -47740 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 561_WT_peak_1656 chr12 40014986 40015161 + 87 NA Intergenic AluSz6|SINE|Alu -1230 NM_005164 225 Hs.117852 NM_005164 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP-binding cassette, sub-family D (ALD), member 2 protein-coding 561_WT_peak_1299 chr11 59436995 59437202 + 87 NA promoter-TSS (NM_152716) promoter-TSS (NM_152716) -587 NM_152716 219988 Hs.591960 NM_152716 HPRD:08214 PATL1 Pat1b|hPat1b protein associated with topoisomerase II homolog 1 (yeast) protein-coding 561_WT_peak_2423 chr15 35280624 35280955 + 87 NA promoter-TSS (NM_014106) promoter-TSS (NM_014106) -292 NM_014106 54989 Hs.744990 NM_014106 HPRD:16918 ZNF770 PRO1914 zinc finger protein 770 protein-coding 561_WT_peak_2024 chr13 45151405 45151844 + 87 NA promoter-TSS (NM_001243799) promoter-TSS (NM_001243799) -923 NM_183422 8848 Hs.436383 NM_006022 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family, member 1 protein-coding 561_WT_peak_1250 chr11 35061816 35062059 + 87 NA Intergenic Intergenic 97642 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 561_WT_peak_1687 chr12 49628349 49628592 + 87 NA Intergenic CpG -30395 NM_032704 84790 Hs.652390 NM_032704 HPRD:06747 TUBA1C TUBA6|bcm948 tubulin, alpha 1c protein-coding 561_WT_peak_6874 chr7 141250960 141251198 + 87 NA promoter-TSS (NM_018238) promoter-TSS (NM_018238) 1 NM_018238 55750 Hs.743318 NM_018238 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 561_WT_peak_1817 chr12 96878936 96879134 + 87 NA Intergenic Intergenic -84669 NM_001170464 5128 Hs.506415 NM_002595 HPRD:09141 CDK17 PCTAIRE2|PCTK2 cyclin-dependent kinase 17 protein-coding 561_WT_peak_4149 chr2 74433499 74433804 + 87 NA intron (NM_006636, intron 2 of 7) intron (NM_006636, intron 2 of 7) 7961 NM_006636 10797 Hs.469030 NM_006636 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 561_WT_peak_1675 chr12 48499630 48499926 + 87 NA promoter-TSS (NR_051992) promoter-TSS (NR_051992) -3 NR_051992 29843 Hs.371957 NM_014554 HPRD:07153 SENP1 SuPr-2 SUMO1/sentrin specific peptidase 1 protein-coding 561_WT_peak_3254 chr17 54911538 54911786 + 87 NA promoter-TSS (NM_001085430) promoter-TSS (NM_001085430) 202 NM_003647 8526 Hs.239514 NM_003647 HPRD:03259 DGKE DAGK5|DAGK6|DGK|NPHS7 diacylglycerol kinase, epsilon 64kDa protein-coding 561_WT_peak_2291 chr14 75517706 75518119 + 87 NA intron (NM_001040108, intron 1 of 12) CpG 323 NM_001040108 27030 Hs.436650 NM_014381 HPRD:05094 MLH3 HNPCC7 mutL homolog 3 protein-coding 561_WT_peak_2130 chr14 23235540 23235924 + 87 NA promoter-TSS (NM_005015) promoter-TSS (NM_005015) 1 NM_005015 5018 Hs.151134 NM_005015 HPRD:03043 OXA1L OXA1 oxidase (cytochrome c) assembly 1-like protein-coding 561_WT_peak_4992 chr3 5019925 5020501 + 87 NA promoter-TSS (NM_003670) promoter-TSS (NM_003670) -884 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 561_WT_peak_6607 chr7 21395046 21395371 + 87 NA Intergenic Intergenic -72481 NM_003112 6671 Hs.88013 NM_003112 HPRD:02764 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 561_WT_peak_5585 chr4 119512991 119513276 + 87 NA intron (NR_109983, intron 1 of 9) AluJr|SINE|Alu 234 NR_109983 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 561_WT_peak_5646 chr4 185455822 185456032 + 87 NA Intergenic Intergenic -60201 NM_002199 3660 Hs.654566 NM_002199 HPRD:00962 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 561_WT_peak_976 chr10 43616356 43616621 + 87 NA intron (NM_020630, intron 15 of 18) intron (NM_020630, intron 15 of 18) -17405 NM_018590 55454 Hs.657569 NM_018590 HPRD:11348 CSGALNACT2 CHGN2|GALNACT-2|GALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 561_WT_peak_134-2 chr1 27986152 27986182 + 87 NA Intergenic MIR3|SINE|MIR 12557 NM_022872 2537 Hs.523847 NM_002038 HPRD:00959 IFI6 6-16|FAM14C|G1P3|IFI-6-16|IFI616 interferon, alpha-inducible protein 6 protein-coding 561_WT_peak_6251-2 chr6 29691777 29691793 + 87 NA intron (NM_018950, intron 2 of 6).5 CpG-21889 668 NM_001098478 3134 Hs.519972 NM_018950 HPRD:00884 HLA-F CDA12|HLA-5.4|HLA-CDA12|HLAF major histocompatibility complex, class I, F protein-coding 561_WT_peak_3277 chr17 57863617 57864112 + 87 NA intron (NM_030938, intron 7 of 11) intron (NM_030938, intron 7 of 11) -54763 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 561_WT_peak_5295 chr3 155572218 155572848 + 87 NA promoter-TSS (NM_004733) promoter-TSS (NM_004733) -285 NM_001190992 9197 Hs.478031 NM_004733 HPRD:04734 SLC33A1 ACATN|AT-1|AT1|CCHLND|SPG42 solute carrier family 33 (acetyl-CoA transporter), member 1 protein-coding 561_WT_peak_2370 chr14 102285961 102286340 + 86 NA intron (NM_001161725, intron 3 of 15) AluJb|SINE|Alu 10010 NM_178587 5527 Hs.368264 NM_002719 HPRD:03385 PPP2R5C B56G|PR61G protein phosphatase 2, regulatory subunit B', gamma protein-coding 561_WT_peak_1962 chr13 26380869 26381145 + 86 NA intron (NM_016529, intron 27 of 36) L1M4|LINE|L1 244191 NM_001007538 387914 Hs.433791 NM_001007538 HPRD:16589 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 561_WT_peak_7531 chrX 47004845 47005068 + 86 NA promoter-TSS (NM_019056) promoter-TSS (NM_019056) 339 NM_001204467 8241 Hs.401509 NM_005676 HPRD:02095 RBM10 DXS8237E|GPATC9|GPATCH9|S1-1|TARPS|ZRANB5 RNA binding motif protein 10 protein-coding 561_WT_peak_389 chr1 113217298 113217458 + 86 NA intron (NM_001286072, intron 1 of 21) intron (NM_001286072, intron 1 of 21) 283 NM_001130079 4343 Hs.514941 NM_020963 HPRD:14732 MOV10 fSAP113|gb110 Mov10 RISC complex RNA helicase protein-coding 561_WT_peak_1489 chr11 116643551 116643903 + 86 NA promoter-TSS (NM_001159736) promoter-TSS (NM_001159736) -13 NM_001159736 84811 Hs.437341 NM_032725 HPRD:11307 BUD13 Cwc26|fSAP71 BUD13 homolog (S. cerevisiae) protein-coding 561_WT_peak_404 chr1 117112965 117113382 + 86 NA intron (NM_001144822, intron 1 of 4) CpG 542 NR_026665 965 Hs.34341 NM_001779 HPRD:01081 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 561_WT_peak_6789 chr7 102311878 102312141 + 86 NA exon (NM_032959, exon 1 of 9) exon (NM_032959, exon 1 of 9) 167 NM_032959 246721 Hs.610255 NM_032958 HPRD:17878 POLR2J2 HRPB11B|RPB11b1 polymerase (RNA) II (DNA directed) polypeptide J2 protein-coding 561_WT_peak_7591 chrX 100645872 100646143 + 86 NA promoter-TSS (NM_001287344) promoter-TSS (NM_001287344) 129 NM_001199972 6173 Hs.432485 NM_021029 HPRD:06709 RPL36A L36A|L44L|MIG6|RPL44 ribosomal protein L36a protein-coding 561_WT_peak_1045 chr10 74114451 74114833 + 86 NA exon (NM_017626, exon 1 of 9) exon (NM_017626, exon 1 of 9) 265 NM_001002762 54788 Hs.500013 NM_017626 HPRD:07086 DNAJB12 DJ10 DnaJ (Hsp40) homolog, subfamily B, member 12 protein-coding 561_WT_peak_1375 chr11 65819838 65820058 + 86 NA exon (NM_006842, exon 1 of 22) exon (NM_006842, exon 1 of 22) 132 NM_006842 10992 Hs.406423 NM_006842 HPRD:10410 SF3B2 Cus1|SAP145|SF3B145|SF3b1|SF3b150 splicing factor 3b, subunit 2, 145kDa protein-coding 561_WT_peak_7494 chrX 2382102 2382388 + 86 NA intron (NM_145177, intron 1 of 6) intron (NM_145177, intron 1 of 6) 36335 NM_001171135 9189 Hs.131452 NM_004729 HPRD:02170 ZBED1 ALTE|DREF|TRAMP|hDREF zinc finger, BED-type containing 1 protein-coding 561_WT_peak_7548 chrX 51486421 51486785 + 86 NA 5' UTR (NM_018094, exon 1 of 1) 5' UTR (NM_018094, exon 1 of 1) 122 NM_018094 23708 Hs.59523 NM_018094 HPRD:02334 GSPT2 ERF3B|GST2 G1 to S phase transition 2 protein-coding 561_WT_peak_1103 chr10 96122724 96123014 + 86 NA promoter-TSS (NM_022451) promoter-TSS (NM_022451) -186 NM_022451 64318 Hs.74899 NM_022451 HPRD:12562 NOC3L AD24|C10orf117|FAD24 nucleolar complex associated 3 homolog (S. cerevisiae) protein-coding 561_WT_peak_446 chr1 145575036 145575141 + 86 NA promoter-TSS (NM_006099) promoter-TSS (NM_006099) -900 NM_006099 10401 Hs.435761 NM_006099 HPRD:09068 PIAS3 ZMIZ5 protein inhibitor of activated STAT, 3 protein-coding 561_WT_peak_7577 chrX 71320845 71321027 + 86 NA intron (NM_001013627, intron 1 of 7) intron (NM_001013627, intron 1 of 7) 30815 NM_001024455 340526 Hs.512180 NM_001024455 HPRD:18594 RGAG4 6430402L03Rik|MAR5|MART5 retrotransposon gag domain containing 4 protein-coding 561_WT_peak_3747 chr19 37708827 37709111 + 86 NA Intergenic CpG -7518 NM_152279 92285 Hs.390568 NM_152279 HPRD:18354 ZNF585B SZFP41 zinc finger protein 585B protein-coding 561_WT_peak_7206 chr9 6068960 6069229 + 86 NA Intergenic Intergenic -53454 NM_012416 26953 Hs.167496 NM_012416 HPRD:17953 RANBP6 - RAN binding protein 6 protein-coding 561_WT_peak_5560 chr4 100484675 100484977 + 86 NA promoter-TSS (NM_152292) promoter-TSS (NM_152292) -1 NM_152292 93587 Hs.380412 NM_152292 HPRD:15241 TRMT10A HEL-S-88|RG9MTD2|TRM10 tRNA methyltransferase 10 homolog A (S. cerevisiae) protein-coding 561_WT_peak_1939 chr13 20437009 20437242 + 86 NA intron (NM_001039650, intron 1 of 5) CpG 651 NM_001142684 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger, MYM-type 5 protein-coding 561_WT_peak_2623 chr15 93590944 93591124 + 86 NA intron (NM_001166286, intron 2 of 2) intron (NM_001166286, intron 2 of 2) 25355 NM_001166286 56963 Hs.271277 NM_020211 HPRD:09560 RGMA RGM repulsive guidance molecule family member a protein-coding 561_WT_peak_916 chr10 23657828 23658011 + 86 NA Intergenic Intergenic -24147 NM_153714 256815 Hs.522360 NM_153714 HPRD:12585 C10orf67 - chromosome 10 open reading frame 67 protein-coding 561_WT_peak_5758 chr5 55346857 55347055 + 86 NA Intergenic Intergenic 55961 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 561_WT_peak_2903 chr16 74401958 74402222 + 86 NA promoter-TSS (NR_026950) promoter-TSS (NR_026950) 63 NR_026950 283922 Hs.558726 NR_026950 ENSG00000214331 LOC283922 - pyruvate dehydrogenase phosphatase regulatory subunit pseudogene pseudo 561_WT_peak_6575 chr7 3340379 3340699 + 86 NA promoter-TSS (NM_152744) promoter-TSS (NM_152744) -541 NM_152744 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 561_WT_peak_5944 chr5 137910766 137911009 + 86 NA intron (NM_004134, intron 1 of 16) CpG 431 NM_004134 3313 Hs.184233 NM_004134 HPRD:02770 HSPA9 CSA|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74 heat shock 70kDa protein 9 (mortalin) protein-coding 561_WT_peak_1839 chr12 107485865 107486094 + 86 NA intron (NM_004075, intron 1 of 12) intron (NM_004075, intron 1 of 12) 1656 NM_004075 1407 Hs.151573 NM_004075 HPRD:09050 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 561_WT_peak_7559 chrX 56590110 56590471 + 86 NA 5' UTR (NM_013444, exon 1 of 1) 5' UTR (NM_013444, exon 1 of 1) 264 NM_013444 29978 Hs.179309 NM_013444 HPRD:02224 UBQLN2 ALS15|CHAP1|DSK2|N4BP4|PLIC2 ubiquilin 2 protein-coding 561_WT_peak_3430 chr18 9118586 9118772 + 86 NA intron (NM_021074, intron 2 of 7) intron (NM_021074, intron 2 of 7) 16051 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 561_WT_peak_7523 chrX 40594687 40595160 + 86 NA promoter-TSS (NM_004229) promoter-TSS (NM_004229) -119 NM_004229 9282 Hs.407604 NM_004229 HPRD:02172 MED14 CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170 mediator complex subunit 14 protein-coding 561_WT_peak_7627 chrX 153513386 153513617 + 86 NA intron (NM_001586, intron 3 of 4) AluJb|SINE|Alu 9953 NM_001586 1527 Hs.672606 NM_001586 HPRD:02103 TEX28 CXorf2|MRX99|TEX28P1|TEX28P2|fTEX testis expressed 28 protein-coding 561_WT_peak_2982 chr17 2497276 2497671 + 86 NA intron (NM_000430, intron 1 of 10) CpG 550 NM_000430 5048 Hs.77318 NM_000430 HPRD:03329 PAFAH1B1 LIS1|LIS2|MDCR|MDS|PAFAH platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) protein-coding 561_WT_peak_6856 chr7 135242600 135243030 + 86 NA intron (NM_015135, intron 1 of 42) intron (NM_015135, intron 1 of 42) 153 NM_015135 23165 Hs.743250 NM_015135 HPRD:17653 NUP205 C7orf14 nucleoporin 205kDa protein-coding 561_WT_peak_7418 chr9 126085139 126085361 + 86 NA Intergenic Intergenic -33196 NM_173689 286204 Hs.568340 NM_173689 HPRD:13093 CRB2 - crumbs family member 2 protein-coding 561_WT_peak_524 chr1 151584481 151584815 + 86 NA promoter-TSS (NM_030918) promoter-TSS (NM_030918) -14 NM_030918 81609 Hs.192326 NM_030918 HPRD:11591 SNX27 MRT1|MY014 sorting nexin family member 27 protein-coding 561_WT_peak_1394 chr11 67981007 67981388 + 86 NA promoter-TSS (NM_016028) promoter-TSS (NM_016028) 42 NM_001300908 51111 Hs.632120 NM_016028 HPRD:11616 SUV420H1 CGI85|KMT5B suppressor of variegation 4-20 homolog 1 (Drosophila) protein-coding 561_WT_peak_6069 chr6 209812 210004 + 86 NA Intergenic Intergenic -61749 NR_109817 441123 NR_109817 ENSG00000170590 LINC00266-3 C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2 long intergenic non-protein coding RNA 266-3 ncRNA 561_WT_peak_7631 chrX 153665427 153665652 + 86 NA TTS (NM_001183) TTS (NM_001183) 280 NM_001493 2664 Hs.74576 NM_001493 HPRD:02114 GDI1 1A|GDIL|MRX41|MRX48|OPHN2|RABGD1A|RABGDIA|XAP-4 GDP dissociation inhibitor 1 protein-coding 561_WT_peak_584 chr1 161123819 161124008 + 86 NA intron (NM_016406, intron 1 of 5) intron (NM_016406, intron 1 of 5) 379 NM_016406 51506 Hs.301412 NM_016406 HPRD:15643 UFC1 HSPC155 ubiquitin-fold modifier conjugating enzyme 1 protein-coding 561_WT_peak_3441 chr18 12990920 12991101 + 86 NA promoter-TSS (NM_032142) promoter-TSS (NM_032142) -351 NM_032142 55125 Hs.100914 NM_018069 HPRD:10855 CEP192 PPP1R62 centrosomal protein 192kDa protein-coding 561_WT_peak_7507 chrX 15808539 15808907 + 86 NA intron (NM_005089, intron 1 of 10) CpG 149 NM_005089 8233 Hs.171909 NM_005089 HPRD:02068 ZRSR2 U2AF1-RS2|U2AF1L2|U2AF1RS2|URP zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 protein-coding 561_WT_peak_3513 chr18 56791146 56791377 + 86 NA Intergenic Intergenic -15864 NM_033280 90701 Hs.45107 NM_033280 HPRD:15310 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C (S. cerevisiae) protein-coding 561_WT_peak_5273 chr3 140660316 140660636 + 85 NA promoter-TSS (NM_018155) promoter-TSS (NM_018155) -186 NM_018155 55186 Hs.144130 NM_018155 HPRD:07688 SLC25A36 PNC2 solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 protein-coding 561_WT_peak_1001 chr10 61666207 61666517 + 85 NA promoter-TSS (NM_005436) promoter-TSS (NM_005436) 52 NM_005436 8030 Hs.591360 NM_005436 HPRD:09064 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 561_WT_peak_2071 chr13 77459874 77460091 + 85 NA exon (NM_138444, exon 1 of 1) exon (NM_138444, exon 1 of 1) 558 NM_138444 115207 Hs.644125 NM_138444 HPRD:11060 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 561_WT_peak_5396 chr4 2414495 2415062 + 85 NA intron (NM_001172656, intron 1 of 11) intron (NM_001172656, intron 1 of 11) 5592 NM_001172658 57732 Hs.292056 NM_020972 HPRD:11701 ZFYVE28 LST2|LYST2 zinc finger, FYVE domain containing 28 protein-coding 561_WT_peak_4810 chr21 43843349 43843660 + 85 NA intron (NM_001001895, intron 6 of 13) MIR3|SINE|MIR 19533 NM_001001895 53347 Hs.473912 NM_018961 HPRD:06904 UBASH3A CLIP4|STS-2|TULA|TULA-1 ubiquitin associated and SH3 domain containing A protein-coding 561_WT_peak_806 chr1 235291984 235292379 + 85 NA promoter-TSS (NM_014765) promoter-TSS (NM_014765) 75 NM_014765 9804 Hs.533192 NM_014765 HPRD:03507 TOMM20 MAS20|MOM19|TOM20 translocase of outer mitochondrial membrane 20 homolog (yeast) protein-coding 561_WT_peak_1524 chr11 128160103 128160483 + 85 NA Intergenic Intergenic 231912 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 561_WT_peak_4220 chr2 97190116 97190347 + 85 NA Intergenic Intergenic -12233 NM_212481 10865 Hs.920 NM_006673 HPRD:12481 ARID5A MRF-1|MRF1|RP11-363D14 AT rich interactive domain 5A (MRF1-like) protein-coding 561_WT_peak_1806 chr12 94699416 94699636 + 85 NA non-coding (NR_037687, exon 12 of 12) non-coding (NR_037687, exon 12 of 12) 43229 NR_037687 10154 Hs.584845 NM_005761 HPRD:05036 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 561_WT_peak_3994 chr2 26568382 26568764 + 85 NA promoter-TSS (NM_033505) promoter-TSS (NM_033505) -381 NM_033505 85465 Hs.189073 NM_033505 HPRD:07616 EPT1 SELI|SEPI ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific) protein-coding 561_WT_peak_6908 chr7 152373335 152373590 + 85 NA promoter-TSS (NM_005431) promoter-TSS (NM_005431) -212 NM_005431 7516 Hs.647093 NM_005431 HPRD:02656 XRCC2 - X-ray repair complementing defective repair in Chinese hamster cells 2 protein-coding 561_WT_peak_6116 chr6 17706227 17707158 + 85 NA 5' UTR (NM_005124, exon 1 of 22) 5' UTR (NM_005124, exon 1 of 22) 373 NM_001278209 9972 Hs.601591 NM_005124 HPRD:04899 NUP153 HNUP153|N153 nucleoporin 153kDa protein-coding 561_WT_peak_7189 chr8 145550384 145550884 + 85 NA promoter-TSS (NM_012079) promoter-TSS (NM_012079) -52 NM_012079 8694 Hs.521954 NM_012079 DGAT1 ARAT|ARGP1|DGAT|DIAR7 diacylglycerol O-acyltransferase 1 protein-coding 561_WT_peak_2185 chr14 45603426 45603719 + 85 NA exon (NM_002013, exon 1 of 7) exon (NM_002013, exon 1 of 7) 160 NM_002013 2287 Hs.509226 NM_002013 HPRD:01743 FKBP3 FKBP-25|FKBP-3|FKBP25|PPIase FK506 binding protein 3, 25kDa protein-coding 561_WT_peak_6128 chr6 24974564 24975125 + 85 NA intron (NM_001286446, intron 1 of 13) L1MB8|LINE|L1 -38564 NM_001286445 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 561_WT_peak_5302 chr3 158362136 158362443 + 85 NA promoter-TSS (NM_024996) promoter-TSS (NM_024996) -28 NM_024996 85476 Hs.518355 NM_024996 HPRD:07365 GFM1 COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1 G elongation factor, mitochondrial 1 protein-coding 561_WT_peak_4702 chr20 56194012 56194729 + 85 NA intron (NM_001160417, intron 1 of 7) MIRb|SINE|MIR 1262 NM_001160419 81030 Hs.302123 NM_030776 HPRD:09484 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 561_WT_peak_2774 chr16 30076536 30076949 + 85 NA promoter-TSS (NM_184041) promoter-TSS (NM_184041) -252 NM_184041 226 Hs.513490 NM_000034 HPRD:00070 ALDOA ALDA|GSD12|HEL-S-87p aldolase A, fructose-bisphosphate protein-coding 561_WT_peak_6268 chr6 30685321 30685545 + 85 NA promoter-TSS (NM_014641).4 promoter-TSS (NM_014641).4 25 NM_014641 9656 Hs.653495 NM_014641 HPRD:16252 MDC1 NFBD1 mediator of DNA-damage checkpoint 1 protein-coding 561_WT_peak_2692 chr16 10837678 10837898 + 85 NA intron (NM_001278506, intron 1 of 9) CpG 145 NM_002484 4682 Hs.81469 NM_002484 HPRD:02611 NUBP1 NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 561_WT_peak_4610 chr20 33680372 33680832 + 85 NA promoter-TSS (NM_199368) promoter-TSS (NM_199368) 16 NM_199368 26133 Hs.168073 NM_015638 HPRD:09238 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel, subfamily C, member 4 associated protein protein-coding 561_WT_peak_6706 chr7 72476686 72476928 + 85 NA promoter-TSS (NR_040583) promoter-TSS (NR_040583) 163 NR_003614 5380 Hs.292996 NR_003614 PMS2L2 PMS4 postmeiotic segregation increased 2-like 2 pseudogene pseudo 561_WT_peak_2650 chr16 1525021 1525351 + 85 NA promoter-TSS (NM_001114331) promoter-TSS (NM_001114331) -101 NM_001114331 1186 Hs.459649 NM_001287 HPRD:04103 CLCN7 CLC-7|CLC7|OPTA2|OPTB4|PPP1R63 chloride channel, voltage-sensitive 7 protein-coding 561_WT_peak_6459 chr6 119671073 119671687 + 85 NA promoter-TSS (NM_005907) promoter-TSS (NM_005907) -449 NM_005907 4121 Hs.102788 NM_005907 HPRD:05066 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase, alpha, class 1A, member 1 protein-coding 561_WT_peak_1825 chr12 100535891 100536627 + 85 NA intron (NM_001006947, intron 1 of 12) CpG 383 NM_001006947 23074 Hs.620701 NM_015054 HPRD:13811 UHRF1BP1L SHIP164 UHRF1 binding protein 1-like protein-coding 561_WT_peak_1616 chr12 13153959 13154249 + 85 NA promoter-TSS (NM_015987) promoter-TSS (NM_015987) 728 NR_002774 93164 Hs.593282 NR_002774 HTR7P1 HTR7P 5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1 pseudo 561_WT_peak_4061 chr2 47403986 47404296 + 85 NA promoter-TSS (NM_001743) promoter-TSS (NM_001743) -401 NM_001743 805 Hs.468442 NM_001743 HPRD:00242 CALM2 CAMII|PHKD|PHKD2 calmodulin 2 (phosphorylase kinase, delta) protein-coding 561_WT_peak_4385 chr2 182321752 182322060 + 85 NA 5' UTR (NM_000885, exon 1 of 28) 5' UTR (NM_000885, exon 1 of 28) 287 NM_000885 3676 Hs.440955 NM_000885 HPRD:01894 ITGA4 CD49D|IA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) protein-coding 561_WT_peak_4738 chr21 9826901 9827034 + 85 NA TTS (NR_037421) TTS (NR_037421) 764 NR_037458 100500815 NR_037458 miRBase:MI0016088 MIR3687-1 MIR3687 microRNA 3687-1 ncRNA 561_WT_peak_5896 chr5 130971174 130971515 + 85 NA promoter-TSS (NM_016340) promoter-TSS (NM_016340) -415 NM_001164390 51735 Hs.483329 NM_016340 HPRD:11483 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor (GEF) 6 protein-coding 561_WT_peak_2142 chr14 24578189 24578482 + 85 NA Intergenic Intergenic -5571 NM_001163484 80344 Hs.525251 NM_025230 HPRD:18297 DCAF11 PRO2389|WDR23 DDB1 and CUL4 associated factor 11 protein-coding 561_WT_peak_141 chr1 28525934 28526279 + 85 NA TTS (NM_014280) TTS (NM_014280) -5659 NM_001164722 5724 Hs.77542 NM_000952 HPRD:01422 PTAFR PAFR platelet-activating factor receptor protein-coding 561_WT_peak_3646 chr19 13898533 13898885 + 85 NA Intergenic Intergenic -7565 NM_023072 65249 Hs.466015 NM_023072 HPRD:15904 ZSWIM4 - zinc finger, SWIM-type containing 4 protein-coding 561_WT_peak_2089 chr13 100089196 100089383 + 85 NA Intergenic Intergenic -30735 NR_039765 100616144 NR_039765 MIR548AN - microRNA 548an ncRNA 561_WT_peak_5932 chr5 135249914 135250080 + 85 NA Intergenic Intergenic -16009 NM_012159 26223 Hs.591275 NM_012159 FBXL21 FBL3B|FBXL3B|FBXL3P|Fbl21 F-box and leucine-rich repeat protein 21 (gene/pseudogene) protein-coding 561_WT_peak_3247 chr17 48944309 48944803 + 85 NA promoter-TSS (NM_001243885) promoter-TSS (NM_001243885) 516 NR_038458 400604 Hs.641441 NR_038458 ENSG00000229980 TOB1-AS1 - TOB1 antisense RNA 1 ncRNA 561_WT_peak_7100 chr8 103818627 103818855 + 85 NA Intergenic CpG 57656 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 561_WT_peak_5432 chr4 26090127 26090407 + 85 NA Intergenic Intergenic 174453 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52 small integral membrane protein 20 protein-coding 561_WT_peak_3316 chr17 65448911 65449153 + 85 NA intron (NM_181671, intron 1 of 9) L1ME1|LINE|L1 75635 NM_012417 26207 Hs.591185 NM_012417 HPRD:05504 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding 561_WT_peak_2001 chr13 40962868 40963297 + 85 NA intron (NR_024506, intron 5 of 5) intron (NR_024506, intron 5 of 5) 92061 NR_024507 646982 Hs.287664 NR_024505 LINC00598 TTL long intergenic non-protein coding RNA 598 ncRNA 561_WT_peak_1992 chr13 37573255 37573577 + 85 NA promoter-TSS (NM_013338) promoter-TSS (NM_013338) 88 NM_001142364 29880 Hs.507769 NM_013338 HPRD:05193 ALG5 bA421P11.2 ALG5, dolichyl-phosphate beta-glucosyltransferase protein-coding 561_WT_peak_5575 chr4 108911143 108911382 + 85 NA intron (NM_001184705, intron 1 of 8) CpG 392 NM_005327 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 561_WT_peak_735 chr1 221915736 221916412 + 85 NA promoter-TSS (NM_007207) promoter-TSS (NM_007207) -556 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 561_WT_peak_1719 chr12 56031373 56031519 + 85 NA exon (NM_206899, exon 1 of 1) exon (NM_206899, exon 1 of 1) 770 NM_206899 121130 Hs.554551 NM_206899 HPRD:14895 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor, family 10, subfamily P, member 1 protein-coding 561_WT_peak_5376 chr3 197381495 197381913 + 85 NA Intergenic CpG 19743 NR_030627 100126321 NR_030627 miRBase:MI0005714 MIR922 MIRN922|hsa-mir-922 microRNA 922 ncRNA 561_WT_peak_2891 chr16 70415027 70415271 + 85 NA 3' UTR (NM_006927, exon 7 of 7) 3' UTR (NM_006927, exon 7 of 7) 34325 NM_018332 55308 Hs.656037 NM_018332 HPRD:07732 DDX19A DDX19-DDX19L|DDX19L DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A protein-coding 561_WT_peak_1611 chr12 12878013 12878335 + 85 NA promoter-TSS (NM_001130415) promoter-TSS (NM_001130415) -677 NM_001130415 81575 Hs.23388 NM_030817 HPRD:13153 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 561_WT_peak_6193 chr6 27106888 27107148 + 85 NA promoter-TSS (NM_003495) promoter-TSS (NM_003495) -70 NM_003495 8294 Hs.248172 NM_003495 HIST1H4I H4/m|H4FM|H4M histone cluster 1, H4i protein-coding 561_WT_peak_3854 chr19 49977432 49977668 + 85 NA promoter-TSS (NM_001204503) promoter-TSS (NM_001204503) 84 NM_001278638 2323 Hs.428 NM_001459 HPRD:02477 FLT3LG FL|FLT3L fms-related tyrosine kinase 3 ligand protein-coding 561_WT_peak_6614 chr7 23145426 23145632 + 85 NA promoter-TSS (NM_018846) promoter-TSS (NM_018846) 176 NR_033329 55975 Hs.654817 NM_018846 HPRD:13927 KLHL7 KLHL6|SBBI26 kelch-like family member 7 protein-coding 561_WT_peak_3626 chr19 11390610 11390847 + 85 NA Intergenic Intergenic -16087 NM_001282509 26526 Hs.579784 NM_012466 HPRD:18197 TSPAN16 TM-8|TM4-B|TM4SF16 tetraspanin 16 protein-coding 561_WT_peak_1248 chr11 35034341 35034514 + 85 NA Intergenic Intergenic 71043 NR_039836 100616437 NR_039836 MIR1343 - microRNA 1343 ncRNA 561_WT_peak_1721 chr12 56323842 56324207 + 85 NA promoter-TSS (NM_001345) promoter-TSS (NM_001345) -922 NM_001345 1606 Hs.524488 NM_001345 HPRD:00517 DGKA DAGK|DAGK1|DGK-alpha diacylglycerol kinase, alpha 80kDa protein-coding 561_WT_peak_5181 chr3 101443336 101443868 + 85 NA intron (NM_024548, intron 1 of 10) CpG 108 NM_024548 79598 Hs.444135 NM_024548 HPRD:08014 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97kDa protein-coding 561_WT_peak_6589 chr7 7679811 7680057 + 85 NA promoter-TSS (NR_034084) promoter-TSS (NR_034084) -408 NR_034084 729852 Hs.652371 NR_034084 RPA3OS RPA3-AS1 RPA3 opposite strand ncRNA 561_WT_peak_4852 chr22 22020328 22020567 + 85 NA intron (NM_148175, intron 1 of 20) CpG 174 NM_148176 23759 Hs.438587 NM_014337 HPRD:08472 PPIL2 CYC4|CYP60|Cyp-60|UBOX7|hCyP-60 peptidylprolyl isomerase (cyclophilin)-like 2 protein-coding 561_WT_peak_4299 chr2 131100518 131100898 + 85 NA promoter-TSS (NM_032357) promoter-TSS (NM_032357) 219 NM_033416 92856 Hs.91579 NM_033416 HPRD:10002 IMP4 BXDC4 IMP4, U3 small nucleolar ribonucleoprotein protein-coding 561_WT_peak_5271 chr3 137906307 137906544 + 85 NA exon (NM_001267041, exon 1 of 21) exon (NM_001267041, exon 1 of 21) 335 NM_001267042 25852 Hs.744868 NM_014154 HPRD:09992 ARMC8 GID5|HSPC056|VID28 armadillo repeat containing 8 protein-coding 561_WT_peak_6418 chr6 106612043 106612738 + 85 NA Intergenic Intergenic 65653 NM_182907 639 Hs.436023 NM_001198 HPRD:04572 PRDM1 BLIMP1|PRDI-BF1 PR domain containing 1, with ZNF domain protein-coding 561_WT_peak_6580 chr7 5862470 5862757 + 85 NA promoter-TSS (NR_023382) promoter-TSS (NR_023382) -178 NR_023382 401303 Hs.372707 NR_023382 ENSG00000235944 ZNF815P ZNF815 zinc finger protein 815, pseudogene pseudo 561_WT_peak_3051 chr17 16120405 16120721 + 85 NA promoter-TSS (NM_004278) promoter-TSS (NM_004278) 54 NM_004278 9487 Hs.499793 NM_004278 HPRD:12071 PIGL CHIME phosphatidylinositol glycan anchor biosynthesis, class L protein-coding 561_WT_peak_5972 chr5 142985930 142986138 + 85 NA Intergenic Intergenic -73391 NR_049829 100846991 NR_049829 miRBase:MI0018176 MIR5197 - microRNA 5197 ncRNA 561_WT_peak_3779 chr19 42579806 42579996 + 84 NA promoter-TSS (NM_022752) promoter-TSS (NM_022752) -389 NM_022752 64763 Hs.13323 NM_022752 HPRD:15853 ZNF574 FP972 zinc finger protein 574 protein-coding 561_WT_peak_2637 chr15 102521089 102521362 + 84 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat -1929 NR_051985 100288486 Hs.644359 NR_034090 ENSG00000248472 DDX11L9 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9 pseudo 561_WT_peak_1432 chr11 82867621 82867802 + 84 NA promoter-TSS (NM_015885) promoter-TSS (NM_015885) -426 NM_015885 51585 Hs.128959 NM_015885 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 561_WT_peak_3865 chr19 50380915 50381145 + 84 NA promoter-TSS (NM_001098633) promoter-TSS (NM_001098633) 348 NM_001168222 79735 Hs.631587 NM_024682 HPRD:15471 TBC1D17 - TBC1 domain family, member 17 protein-coding 561_WT_peak_1598 chr12 12134070 12134369 + 84 NA Intergenic Intergenic -55112 NR_046487 100873754 NR_046487 ENSG00000207449 RNU6-19P RNU6-19 RNA, U6 small nuclear 19, pseudogene snRNA 561_WT_peak_1428 chr11 82611647 82611898 + 84 NA promoter-TSS (NM_145018) promoter-TSS (NM_145018) -215 NM_005040 5547 Hs.523936 NM_005040 HPRD:08352 PRCP HUMPCP|PCP prolylcarboxypeptidase (angiotensinase C) protein-coding 561_WT_peak_1521 chr11 126173854 126174139 + 84 NA exon (NM_014026, exon 1 of 6) exon (NM_014026, exon 1 of 6) 349 NM_014026 28960 Hs.504249 NM_014026 HPRD:16787 DCPS DCS1|HINT-5|HINT5|HSL1 decapping enzyme, scavenger protein-coding 561_WT_peak_4685 chr20 50021300 50021851 + 84 NA intron (NM_001258296, intron 9 of 10) intron (NM_001258296, intron 9 of 10) 47939 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 561_WT_peak_4112 chr2 67624532 67624769 + 84 NA exon (NM_019002, exon 1 of 6) exon (NM_019002, exon 1 of 6) 208 NM_019002 54465 Hs.353022 NM_019002 HPRD:13282 ETAA1 ETAA16 Ewing tumor-associated antigen 1 protein-coding 561_WT_peak_5908 chr5 131832355 131832690 + 84 NA Intergenic CpG -6057 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 561_WT_peak_6911 chr7 155088769 155089163 + 84 NA promoter-TSS (NM_198337) promoter-TSS (NM_198337) -520 NM_198337 3638 Hs.520819 NM_005542 HPRD:03633 INSIG1 CL-6|CL6 insulin induced gene 1 protein-coding 561_WT_peak_3853 chr19 49956697 49957243 + 84 NA intron (NM_001145396, intron 1 of 15) intron (NM_001145396, intron 1 of 15) 497 NM_001145396 126133 Hs.719998 NM_153329 HPRD:14394 ALDH16A1 - aldehyde dehydrogenase 16 family, member A1 protein-coding 561_WT_peak_6635 chr7 32535157 32535524 + 84 NA promoter-TSS (NM_001139499) promoter-TSS (NM_001139499) 164 NM_015060 23080 Hs.128056 NM_015060 HPRD:13788 AVL9 KIAA0241 AVL9 homolog (S. cerevisiase) protein-coding 561_WT_peak_5425 chr4 17616261 17616485 + 84 NA promoter-TSS (NM_025205) promoter-TSS (NM_025205) 100 NM_025205 80306 Hs.731966 NM_025205 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 561_WT_peak_1225 chr11 17307395 17307574 + 84 NA intron (NM_005013, intron 2 of 13) (CA)n|Simple_repeat|Simple_repeat 9198 NM_005013 4925 Hs.654599 NM_005013 HPRD:09726 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 561_WT_peak_823 chr1 244614683 244615332 + 84 NA exon (NM_001126, exon 1 of 13) exon (NM_001126, exon 1 of 13) 429 NM_001126 159 Hs.498313 NM_001126 HPRD:00050 ADSS ADEH|ADSS 2 adenylosuccinate synthase protein-coding 561_WT_peak_5681 chr5 32542729 32542920 + 84 NA Intergenic L1MB7|LINE|L1 -42781 NM_006713 10923 Hs.229641 NM_006713 HPRD:02737 SUB1 P15|PC4|p14 SUB1 homolog (S. cerevisiae) protein-coding 561_WT_peak_4021 chr2 33722329 33722518 + 84 NA intron (NM_001139488, intron 1 of 17) intron (NM_001139488, intron 1 of 17) -16519 NM_015376 25780 Hs.143674 NM_015376 HPRD:15213 RASGRP3 GRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) protein-coding 561_WT_peak_4059 chr2 47402531 47402857 + 84 NA intron (NM_001743, intron 1 of 5) intron (NM_001743, intron 1 of 5) 1046 NM_001743 805 Hs.468442 NM_001743 HPRD:00242 CALM2 CAMII|PHKD|PHKD2 calmodulin 2 (phosphorylase kinase, delta) protein-coding 561_WT_peak_2457 chr15 44829348 44829632 + 84 NA promoter-TSS (NR_034171) promoter-TSS (NR_034171) 224 NM_003758 8669 Hs.404056 NM_003758 HPRD:04883 EIF3J EIF3S1|eIF3-alpha|eIF3-p35 eukaryotic translation initiation factor 3, subunit J protein-coding 561_WT_peak_1120 chr10 102289356 102289653 + 84 NA intron (NM_001284368, intron 1 of 4) CpG 176 NM_001284367 4714 Hs.523215 NM_005004 HPRD:11886 NDUFB8 ASHI|CI-ASHI NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa protein-coding 561_WT_peak_3943 chr2 677266 677783 + 84 NA promoter-TSS (NM_152834) promoter-TSS (NM_152834) -85 NM_152834 129787 Hs.43899 NM_152834 TMEM18 - transmembrane protein 18 protein-coding 561_WT_peak_3671 chr19 16482356 16482671 + 84 NA intron (NR_047665, intron 21 of 22) intron (NR_047665, intron 21 of 22) 46862 NM_016270 10365 Hs.744182 NM_016270 HPRD:03602 KLF2 LKLF Kruppel-like factor 2 protein-coding 561_WT_peak_1029 chr10 70847326 70847587 + 84 NA promoter-TSS (NR_036430) promoter-TSS (NR_036430) -372 NM_002727 5552 Hs.1908 NM_002727 HPRD:01513 SRGN PPG|PRG|PRG1 serglycin protein-coding 561_WT_peak_1647 chr12 32043695 32043926 + 84 NA Intergenic Intergenic -68543 NM_018169 55196 Hs.445129 NM_018169 HPRD:07691 KIAA1551 C12orf35 KIAA1551 protein-coding 561_WT_peak_5631 chr4 160024239 160024409 + 84 NA Intergenic CpG -25633 NR_039963 100616303 NR_039963 MIR3688-2 - microRNA 3688-2 ncRNA 561_WT_peak_5170 chr3 98275379 98275455 + 84 NA Intergenic Intergenic 24674 NM_005290 2838 Hs.563128 NM_005290 HPRD:03102 GPR15 BOB G protein-coupled receptor 15 protein-coding 561_WT_peak_3427 chr18 9102083 9102343 + 84 NA promoter-TSS (NM_021074) promoter-TSS (NM_021074) -415 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 561_WT_peak_2849 chr16 56553589 56553975 + 84 NA 5' UTR (NM_031885, exon 1 of 17) 5' UTR (NM_031885, exon 1 of 17) 226 NM_031885 583 Hs.333738 NM_031885 HPRD:05855 BBS2 BBS Bardet-Biedl syndrome 2 protein-coding 561_WT_peak_7089 chr8 101844694 101844887 + 84 NA Intergenic HAL1|LINE|L1 -110475 NM_002568 26986 Hs.387804 NM_002568 HPRD:05247 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein, cytoplasmic 1 protein-coding 561_WT_peak_717 chr1 209941734 209942110 + 84 NA promoter-TSS (NM_001287754) promoter-TSS (NM_001287754) 89 NM_001287754 80342 Hs.147434 NM_025228 HPRD:16305 TRAF3IP3 T3JAM TRAF3 interacting protein 3 protein-coding 561_WT_peak_4549 chr20 3748574 3748885 + 84 NA promoter-TSS (NM_001039140) promoter-TSS (NM_001039140) -277 NM_001258430 54976 Hs.274422 NM_017874 HPRD:16648 C20orf27 - chromosome 20 open reading frame 27 protein-coding 561_WT_peak_5983 chr5 149829411 149829606 + 84 NA promoter-TSS (NM_005617) promoter-TSS (NM_005617) -189 NM_001025071 6208 Hs.744846 NM_005617 HPRD:00562 RPS14 EMTB|S14 ribosomal protein S14 protein-coding 561_WT_peak_5581 chr4 114486173 114486401 + 84 NA intron (NM_172114, intron 4 of 17) intron (NM_172114, intron 4 of 17) 196796 NM_172127 817 Hs.144114 NM_001221 HPRD:09653 CAMK2D CAMKD calcium/calmodulin-dependent protein kinase II delta protein-coding 561_WT_peak_7081 chr8 100905564 100905899 + 84 NA intron (NM_004374, intron 1 of 3) CpG 511 NM_004374 1345 Hs.351875 NM_004374 HPRD:00494 COX6C - cytochrome c oxidase subunit VIc protein-coding 561_WT_peak_2578 chr15 83478462 83478664 + 84 NA exon (NM_001080435, exon 1 of 10) exon (NM_001080435, exon 1 of 10) 183 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHDC1 WAS protein homolog associated with actin, golgi membranes and microtubules protein-coding 561_WT_peak_6597 chr7 12726566 12726999 + 84 NA promoter-TSS (NM_001195396) promoter-TSS (NM_001195396) -129 NM_001195396 10124 Hs.245540 NM_005738 HPRD:11987 ARL4A ARL4 ADP-ribosylation factor-like 4A protein-coding 561_WT_peak_1516 chr11 123324927 123325252 + 84 NA Intergenic Intergenic -71255 NM_020716 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B - GRAM domain containing 1B protein-coding 561_WT_peak_4347 chr2 161933976 161934500 + 84 NA Intergenic L2a|LINE|L2 -59228 NM_133484 10010 Hs.132257 NM_004180 HPRD:04870 TANK I-TRAF|ITRAF|TRAF2 TRAF family member-associated NFKB activator protein-coding 561_WT_peak_1763 chr12 69979296 69979566 + 84 NA promoter-TSS (NM_001198842) promoter-TSS (NM_001198842) -31 NM_001198842 10576 Hs.189772 NM_006431 HPRD:06895 CCT2 99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta chaperonin containing TCP1, subunit 2 (beta) protein-coding 561_WT_peak_255 chr1 59248515 59248907 + 84 NA exon (NM_002228, exon 1 of 1) exon (NM_002228, exon 1 of 1) 1074 NM_002228 3725 Hs.696684 NM_002228 HPRD:01302 JUN AP-1|AP1|c-Jun jun proto-oncogene protein-coding 561_WT_peak_299 chr1 84610809 84610940 + 84 NA intron (NM_182948, intron 1 of 9) intron (NM_182948, intron 1 of 9) 943 NM_182948 5567 Hs.487325 NM_002731 HPRD:01482 PRKACB PKA C-beta|PKACB protein kinase, cAMP-dependent, catalytic, beta protein-coding 561_WT_peak_5098 chr3 48700994 48701216 + 84 NA promoter-TSS (NM_001407) promoter-TSS (NM_001407) -96 NR_111921 102724368 Hs.663571 NR_111921 CELSR3-AS1 - CELSR3 antisense RNA 1 (head to head) ncRNA 561_WT_peak_5955 chr5 139493571 139493762 + 84 NA promoter-TSS (NM_005859) promoter-TSS (NM_005859) -42 NM_005859 5813 Hs.443121 NM_005859 PURA PUR-ALPHA|PUR1|PURALPHA purine-rich element binding protein A protein-coding 561_WT_peak_5140 chr3 58456958 58457381 + 84 NA Intergenic Intergenic -20654 NM_001128214 200845 Hs.13982 NM_153331 HPRD:13769 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 561_WT_peak_4459 chr2 208490270 208490530 + 84 NA promoter-TSS (NM_001127395) promoter-TSS (NM_001127395) -427 NM_001127395 151194 Hs.664764 NM_145280 HPRD:14090 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 561_WT_peak_4863 chr22 26879593 26880026 + 84 NA promoter-TSS (NM_022081) promoter-TSS (NM_022081) 20 NM_022081 89781 Hs.474436 NM_022081 HPRD:05983 HPS4 LE Hermansky-Pudlak syndrome 4 protein-coding 561_WT_peak_1073 chr10 81107756 81108175 + 84 NA intron (NM_005729, intron 1 of 5) intron (NM_005729, intron 1 of 5) 745 NM_005729 10105 Hs.381072 NM_005729 HPRD:06839 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 561_WT_peak_2482 chr15 51200717 51200945 + 84 NA promoter-TSS (NM_001252127) promoter-TSS (NM_001252127) -38 NM_007347 23431 Hs.413366 NM_007347 HPRD:06258 AP4E1 CPSQ4|SPG51 adaptor-related protein complex 4, epsilon 1 subunit protein-coding 561_WT_peak_719 chr1 210547337 210547575 + 84 NA intron (NM_018194, intron 3 of 11) intron (NM_018194, intron 3 of 11) 44816 NM_001170580 55733 Hs.58650 NM_018194 HPRD:12041 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 561_WT_peak_6498 chr6 142716952 142717159 + 84 NA intron (NM_001032394, intron 8 of 24) intron (NM_001032394, intron 8 of 24) 93999 NM_001032395 57211 Hs.743302 NM_020455 HPRD:17059 GPR126 APG1|DREG|PS1TP2|VIGR G protein-coupled receptor 126 protein-coding 561_WT_peak_3973 chr2 15731621 15731887 + 84 NA promoter-TSS (NM_004939) promoter-TSS (NM_004939) 9 NM_004939 1653 Hs.440599 NM_004939 HPRD:03158 DDX1 DBP-RB|UKVH5d DEAD (Asp-Glu-Ala-Asp) box helicase 1 protein-coding 561_WT_peak_5521 chr4 83351411 83351713 + 84 NA promoter-TSS (NM_001207000) promoter-TSS (NM_001207000) -71 NM_021204 58478 Hs.18442 NM_021204 HPRD:17467 ENOPH1 E1|MASA|MST145|mtnC enolase-phosphatase 1 protein-coding 561_WT_peak_2453 chr15 43802595 43802896 + 84 NA promoter-TSS (NM_005657) promoter-TSS (NM_005657) -38 NM_005657 7158 Hs.440968 NM_005657 HPRD:05569 TP53BP1 53BP1|p202 tumor protein p53 binding protein 1 protein-coding 561_WT_peak_4734 chr20 62918518 62918834 + 84 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat -3062 NR_040415 140849 Hs.745565 NR_040415 LINC00266-1 C20orf69|NCRNA00266|NCRNA00266-1|bA476I15.3 long intergenic non-protein coding RNA 266-1 ncRNA 561_WT_peak_771 chr1 228748195 228748436 + 84 NA Intergenic CpG -32079 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_1056 chr10 75617223 75617446 + 84 NA intron (NM_172171, intron 3 of 20) MER5A1|DNA|hAT-Charlie 17015 NM_001222 818 Hs.523045 NM_001222 HPRD:03672 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin-dependent protein kinase II gamma protein-coding 561_WT_peak_3362 chr17 76124983 76125327 + 84 NA promoter-TSS (NM_001127198) promoter-TSS (NM_001127198) -294 NM_001127198 11322 Hs.632227 NM_007267 HPRD:08386 TMC6 EV1|EVER1|EVIN1|LAK-4P transmembrane channel-like 6 protein-coding 561_WT_peak_436 chr1 145129742 145130114 + 84 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) 33521 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 561_WT_peak_4411 chr2 196521991 196522241 + 84 NA intron (NM_020342, intron 1 of 9) CpG 264 NM_020342 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 561_WT_peak_1315 chr11 62341141 62341343 + 83 NA intron (NM_001404, intron 1 of 9) CpG 218 NM_001404 1937 Hs.144835 NM_001404 HPRD:11745 EEF1G EF1G|GIG35 eukaryotic translation elongation factor 1 gamma protein-coding 561_WT_peak_5383 chr4 467480 467920 + 83 NA intron (NM_133474, intron 1 of 2) CpG 298 NR_002451 79963 Hs.745030 NM_024903 ABCA11P ABCA11|EST1133530 ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene pseudo 561_WT_peak_795 chr1 233734722 233735025 + 83 NA Intergenic Intergenic -14877 NM_002245 3775 Hs.208544 NM_002245 HPRD:03447 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium channel, subfamily K, member 1 protein-coding 561_WT_peak_6211 chr6 27740363 27740535 + 83 NA Intergenic Intergenic 10926 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 561_WT_peak_1014 chr10 64893139 64893522 + 83 NA intron (NM_001282405, intron 1 of 2) CpG 323 NM_030759 29982 Hs.449628 NM_030759 HPRD:11401 NRBF2 COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 561_WT_peak_1389 chr11 67232297 67232519 + 83 NA intron (NM_001078650, intron 4 of 5) CpG 4340 NR_073409 80194 Hs.288761 NM_025124 HPRD:08642 TMEM134 - transmembrane protein 134 protein-coding 561_WT_peak_5600 chr4 140374326 140374788 + 83 NA promoter-TSS (NM_031296) promoter-TSS (NM_031296) -404 NM_031296 83452 Hs.591679 NM_031296 HPRD:05808 RAB33B SMC2 RAB33B, member RAS oncogene family protein-coding 561_WT_peak_3745 chr19 37406803 37407396 + 83 NA promoter-TSS (NM_001171979) promoter-TSS (NM_001171979) 94 NM_001037232 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 561_WT_peak_992 chr10 52268086 52268314 + 83 NA intron (NM_147156, intron 3 of 10) MIRb|SINE|MIR 115537 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 561_WT_peak_7260 chr9 37904046 37904590 + 83 NA promoter-TSS (NR_024873) promoter-TSS (NR_024873) 32 NR_024872 92014 Hs.634120 NM_033412 HPRD:14370 SLC25A51 CG7943|MCART1 solute carrier family 25, member 51 protein-coding 561_WT_peak_3925 chr19 58400134 58400408 + 83 NA 5' UTR (NM_001144989, exon 1 of 3) 5' UTR (NM_001144989, exon 1 of 3) 171 NM_001144989 730051 Hs.634143 NM_001144989 ZNF814 - zinc finger protein 814 protein-coding 561_WT_peak_4372 chr2 175458299 175458481 + 83 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) -35590 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 561_WT_peak_4081 chr2 61108128 61108159 + 83 NA promoter-TSS (NM_001291746) promoter-TSS (NM_001291746) 306 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 561_WT_peak_910 chr10 22610239 22610643 + 83 NA 5' UTR (NM_005180, exon 1 of 10) 5' UTR (NM_005180, exon 1 of 10) 302 NM_005180 648 Hs.380403 NM_005180 HPRD:01277 BMI1 FLVI2/BMI1|PCGF4|RNF51 BMI1 proto-oncogene, polycomb ring finger protein-coding 561_WT_peak_4837 chr22 20104806 20105019 + 83 NA promoter-TSS (NM_001257994) promoter-TSS (NM_001257994) -35 NM_001278640 5902 Hs.24763 NM_002882 HPRD:03110 RANBP1 HTF9A RAN binding protein 1 protein-coding 561_WT_peak_6436 chr6 111302957 111303166 + 83 NA promoter-TSS (NM_032194) promoter-TSS (NM_032194) -159 NM_001289111 84154 Hs.372265 NM_032194 RPF2 BXDC1|bA397G5.4 ribosome production factor 2 homolog (S. cerevisiae) protein-coding 561_WT_peak_1451 chr11 93394546 93394742 + 83 NA promoter-TSS (NM_033395) promoter-TSS (NM_033395) -172 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 KIAA1731 - KIAA1731 protein-coding 561_WT_peak_3755 chr19 38886280 38886526 + 83 NA exon (NM_001042522, exon 5 of 5) exon (NM_001042522, exon 5 of 5) 5471 NR_073032 399473 Hs.196011 NM_001039616 SPRED3 Eve-3|spred-3 sprouty-related, EVH1 domain containing 3 protein-coding 561_WT_peak_3488 chr18 36520859 36521116 + 83 NA Intergenic Intergenic -735698 NR_049847 100847025 NR_049847 miRBase:MI0019139 MIR5583-1 - microRNA 5583-1 ncRNA 561_WT_peak_2455 chr15 44580456 44580925 + 83 NA promoter-TSS (NM_138423) promoter-TSS (NM_138423) -219 NM_177974 113201 Hs.512867 NM_138423 HPRD:11018 CASC4 H63 cancer susceptibility candidate 4 protein-coding 561_WT_peak_3118 chr17 31204423 31204665 + 83 NA promoter-TSS (NM_015194) promoter-TSS (NM_015194) -642 NM_015194 4642 Hs.602063 NM_015194 HPRD:07581 MYO1D PPP1R108|myr4 myosin ID protein-coding 561_WT_peak_2385 chr14 103894253 103894445 + 83 NA intron (NM_001128921, intron 2 of 15) MER41B|LTR|ERV1 42648 NM_001128920 4140 Hs.35828 NM_002376 HPRD:04058 MARK3 CTAK1|KP78|PAR1A|Par-1a MAP/microtubule affinity-regulating kinase 3 protein-coding 561_WT_peak_22 chr1 2232465 2232694 + 83 NA intron (NM_003036, intron 1 of 6) CpG 51521 NR_024489 100129534 Hs.655313 NM_001127577 LOC100129534 - small nuclear ribonucleoprotein polypeptide N pseudogene pseudo 561_WT_peak_5692 chr5 36242386 36242698 + 83 NA promoter-TSS (NM_153013) promoter-TSS (NM_153013) -161 NM_153013 133686 Hs.81907 NM_153013 HPRD:08088 NADK2 C5orf33|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 561_WT_peak_2118 chr14 21458183 21458381 + 83 NA intron (NM_001029991, intron 1 of 12) intron (NM_001029991, intron 1 of 12) 317 NM_001029991 64745 Hs.512693 NM_022734 HPRD:13379 METTL17 METT11D1 methyltransferase like 17 protein-coding 561_WT_peak_6813 chr7 106809415 106809650 + 83 NA promoter-TSS (NM_012257) promoter-TSS (NM_012257) 72 NM_012257 26959 Hs.162032 NM_012257 HPRD:13634 HBP1 - HMG-box transcription factor 1 protein-coding 561_WT_peak_3557 chr19 1095412 1095629 + 83 NA promoter-TSS (NM_002695) promoter-TSS (NM_002695) -129 NM_002695 5434 Hs.24301 NM_002695 POLR2E RPABC1|RPB5|XAP4|hRPB25|hsRPB5 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa protein-coding 561_WT_peak_3379 chr17 78785462 78785638 + 83 NA intron (NM_020761, intron 7 of 33) intron (NM_020761, intron 7 of 33) -6118 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 561_WT_peak_1387 chr11 67055851 67056417 + 83 NA promoter-TSS (NM_207354) promoter-TSS (NM_207354) -628 NM_207354 338692 Hs.438673 NM_207354 HPRD:17349 ANKRD13D - ankyrin repeat domain 13 family, member D protein-coding 561_WT_peak_5326 chr3 172304273 172304473 + 83 NA Intergenic Intergenic -63076 NM_001190942 8743 Hs.478275 NM_003810 HPRD:04670 TNFSF10 APO2L|Apo-2L|CD253|TL2|TRAIL tumor necrosis factor (ligand) superfamily, member 10 protein-coding 561_WT_peak_922 chr10 27149472 27149660 + 83 NA intron (NM_001178116, intron 1 of 11) CpG 450 NM_001012750 10006 Hs.508148 NM_005470 HPRD:04336 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl-interactor 1 protein-coding 561_WT_peak_6777 chr7 100026130 100026423 + 83 NA promoter-TSS (NM_001194991) promoter-TSS (NM_001194991) -137 NM_001194992 56257 Hs.178011 NM_019606 HPRD:07889 MEPCE BCDIN3 methylphosphate capping enzyme protein-coding 561_WT_peak_6681 chr7 63774411 63774695 + 83 NA intron (NM_001170905, intron 1 of 3) intron (NM_001170905, intron 1 of 3) 302 NM_001170905 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 561_WT_peak_145 chr1 28969745 28970014 + 83 NA promoter-TSS (NM_001135218) promoter-TSS (NM_001135218) -275 NM_005644 6883 Hs.530251 NM_005644 HPRD:15981 TAF12 TAF2J|TAFII20 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa protein-coding 561_WT_peak_2036 chr13 47370975 47371253 + 83 NA intron (NM_001984, intron 1 of 9) CpG 253 NM_001984 2098 Hs.432491 NM_001984 HPRD:00588 ESD FGH esterase D protein-coding 561_WT_peak_3384 chr17 79398853 79399049 + 83 NA intron (NM_001291324, intron 1 of 27) HAL1-2a_MD|LINE|L1 19263 NR_036152 100422944 NR_036152 miRBase:MI0014229 MIR3186 - microRNA 3186 ncRNA 561_WT_peak_3476 chr18 29620961 29621182 + 83 NA intron (NM_017831, intron 2 of 5) intron (NM_017831, intron 2 of 5) 22626 NM_017831 54941 Hs.633703 NM_017831 HPRD:11500 RNF125 TRAC-1|TRAC1 ring finger protein 125, E3 ubiquitin protein ligase protein-coding 561_WT_peak_6224 chr6 27806403 27806649 + 83 NA promoter-TSS (NM_003510) promoter-TSS (NM_003510) 86 NM_003520 8341 Hs.534368 NM_003520 HPRD:11899 HIST1H2BN H2B/d|H2BFD histone cluster 1, H2bn protein-coding 561_WT_peak_7449 chr9 131938239 131938536 + 83 NA 3' UTR (NM_203434, exon 1 of 1) 3' UTR (NM_203434, exon 1 of 1) 2153 NM_203434 389792 Hs.529857 NM_203434 HPRD:17128 IER5L bA247A12.2 immediate early response 5-like protein-coding 561_WT_peak_6988 chr8 41347730 41348013 + 83 NA promoter-TSS (NM_001174124) promoter-TSS (NM_001174124) -210 NM_016099 51125 Hs.654773 NM_016099 HPRD:13595 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 561_WT_peak_2159 chr14 31494827 31495342 + 83 NA promoter-TSS (NM_001254728) promoter-TSS (NM_001254728) 408 NM_007077 11154 Hs.293411 NM_007077 HPRD:06257 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor-related protein complex 4, sigma 1 subunit protein-coding 561_WT_peak_1328 chr11 63438861 63439169 + 83 NA 5' UTR (NM_015459, exon 1 of 13) 5' UTR (NM_015459, exon 1 of 13) 187 NM_015459 25923 Hs.356719 NM_015459 HPRD:13170 ATL3 HSN1F atlastin GTPase 3 protein-coding 561_WT_peak_6331 chr6 43214927 43215120 + 83 NA intron (NM_032538, intron 2 of 14) intron (NM_032538, intron 2 of 14) 3801 NM_032538 84630 Hs.485436 NM_032538 HPRD:11653 TTBK1 BDTK tau tubulin kinase 1 protein-coding 561_WT_peak_2575 chr15 82824660 82825020 + 83 NA promoter-TSS (NR_111943) promoter-TSS (NR_111943) 25 NR_111943 6218 Hs.433427 NM_001021 HPRD:01600 RPS17 DBA4|RPS17L|RPS17L1|RPS17L2|S17 ribosomal protein S17 protein-coding 561_WT_peak_372 chr1 111214914 111215503 + 83 NA promoter-TSS (NR_109846) promoter-TSS (NR_109846) -811 NR_109846 3738 Hs.169948 NM_002232 HPRD:15937 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel, shaker-related subfamily, member 3 protein-coding 561_WT_peak_4880 chr22 30831613 30831954 + 83 NA Intergenic (CTG)n|Simple_repeat|Simple_repeat 10172 NM_001003704 51537 Hs.713636 NM_016498 HPRD:17612 MTFP1 MTP18 mitochondrial fission process 1 protein-coding 561_WT_peak_5131 chr3 56759238 56759570 + 83 NA Intergenic Intergenic -42269 NM_001112736 23272 Hs.116877 NM_015224 HPRD:10183 FAM208A C3orf63|RAP140|se89-1 family with sequence similarity 208, member A protein-coding 561_WT_peak_3326 chr17 66292810 66293032 + 83 NA intron (NM_001267727, intron 1 of 11) intron (NM_001267727, intron 1 of 11) 5285 NM_001267727 22901 Hs.437249 NM_014960 ARSG - arylsulfatase G protein-coding 561_WT_peak_2527 chr15 67394712 67394869 + 83 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -23264 NM_001145102 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 561_WT_peak_7450 chr9 132175301 132175559 + 83 NA Intergenic Intergenic -75509 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 561_WT_peak_1422 chr11 77706037 77706251 + 83 NA promoter-TSS (NM_033547) promoter-TSS (NM_033547) -427 NM_033547 92105 Hs.533723 NM_033547 HPRD:12386 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 561_WT_peak_2227 chr14 57046582 57046763 + 83 NA exon (NM_017799, exon 1 of 16) exon (NM_017799, exon 1 of 16) 161 NM_017799 54916 Hs.497253 NM_017799 HPRD:12624 TMEM260 C14orf101 transmembrane protein 260 protein-coding 561_WT_peak_3794 chr19 45582414 45582647 + 83 NA promoter-TSS (NM_024707) promoter-TSS (NM_024707) 0 NM_001007269 79760 Hs.466919 NM_024707 HPRD:07600 GEMIN7 SIP3 gem (nuclear organelle) associated protein 7 protein-coding 561_WT_peak_3160 chr17 37910644 37910928 + 83 NA Intergenic CpG 14566 NM_001242443 2886 Hs.86859 NM_005310 HPRD:03311 GRB7 - growth factor receptor-bound protein 7 protein-coding 561_WT_peak_5088 chr3 46037400 46037585 + 83 NA promoter-TSS (NM_024513) promoter-TSS (NM_024513) -176 NM_024513 79443 Hs.200227 NM_024513 HPRD:06215 FYCO1 CATC2|CTRCT18|RUFY3|ZFYVE7 FYVE and coiled-coil domain containing 1 protein-coding 561_WT_peak_272 chr1 66332108 66332397 + 83 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) -46676 NM_001297441 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 561_WT_peak_4514 chr2 237994120 237994614 + 83 NA 5' UTR (NM_006710, exon 1 of 8) 5' UTR (NM_006710, exon 1 of 8) 283 NM_006710 10920 Hs.531713 NM_006710 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 561_WT_peak_5139 chr3 58419741 58419908 + 83 NA promoter-TSS (NR_033384) promoter-TSS (NR_033384) -245 NM_001173468 5162 Hs.161357 NM_000925 HPRD:01530 PDHB PDHBD|PDHE1-B|PHE1B pyruvate dehydrogenase (lipoamide) beta protein-coding 561_WT_peak_4888 chr22 31892467 31892879 + 83 NA intron (NM_001258326, intron 1 of 30) CpG 548 NM_001258327 9814 Hs.62209 NM_014775 HPRD:11550 SFI1 PISD|PPP1R139|hSfi1p Sfi1 homolog, spindle assembly associated (yeast) protein-coding 561_WT_peak_2576 chr15 82825114 82825198 + 83 NA promoter-TSS (NM_001021) promoter-TSS (NM_001021) -204 NR_111944 6218 Hs.433427 NM_001021 HPRD:01600 RPS17 DBA4|RPS17L|RPS17L1|RPS17L2|S17 ribosomal protein S17 protein-coding 561_WT_peak_6445 chr6 116574886 116575119 + 83 NA exon (NM_021648, exon 1 of 1) exon (NM_021648, exon 1 of 1) 259 NM_021648 23270 Hs.284141 NM_021648 HPRD:18236 TSPYL4 dJ486I3.2 TSPY-like 4 protein-coding 561_WT_peak_362 chr1 110091109 110091428 + 83 NA promoter-TSS (NM_006496) promoter-TSS (NM_006496) 82 NM_006496 2773 Hs.73799 NM_006496 GNAI3 87U6|ARCND1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 protein-coding 561_WT_peak_5398 chr4 2538025 2538402 + 83 NA Intergenic CpG 67033 NM_001185009 6047 Hs.66394 NM_002938 HPRD:04167 RNF4 SLX5|SNURF ring finger protein 4 protein-coding 561_WT_peak_2610 chr15 91498202 91498410 + 83 NA TTS (NM_018671) TTS (NM_018671) 200 NM_033544 91433 Hs.655895 NM_033544 HPRD:18706 RCCD1 - RCC1 domain containing 1 protein-coding 561_WT_peak_6429 chr6 109242820 109243031 + 83 NA intron (NM_032131, intron 10 of 17) intron (NM_032131, intron 10 of 17) 2381 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 561_WT_peak_2231 chr14 58711638 58711874 + 83 NA intron (NR_038123, intron 1 of 9) CpG 233 NM_152132 5684 Hs.558799 NM_002788 HPRD:01463 PSMA3 HC8|PSC3 proteasome (prosome, macropain) subunit, alpha type, 3 protein-coding 561_WT_peak_4467 chr2 217277054 217277278 + 83 NA promoter-TSS (NM_001127207) promoter-TSS (NM_001127207) 29 NM_014140 50485 Hs.516674 NM_014140 HPRD:05969 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 protein-coding 561_WT_peak_1142 chr10 111985523 111985704 + 83 NA promoter-TSS (NM_005962) promoter-TSS (NM_005962) -149 NM_005962 4601 Hs.602078 NM_005962 HPRD:02486 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 561_WT_peak_5077 chr3 43732375 43732690 + 83 NA intron (NM_016006, intron 1 of 6) CpG 157 NM_016006 51099 Hs.19385 NM_016006 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 561_WT_peak_2746 chr16 26609418 26609836 + 82 NA Intergenic Intergenic -468592 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 561_WT_peak_4854 chr22 24038343 24038743 + 82 NA intron (NR_024448, intron 7 of 11) intron (NR_024448, intron 7 of 11) 5495 NM_153615 266747 Hs.658997 NM_153615 HPRD:11528 RGL4 Rgr ral guanine nucleotide dissociation stimulator-like 4 protein-coding 561_WT_peak_6300 chr6 34393646 34393816 + 82 NA promoter-TSS (NM_001203245) promoter-TSS (NM_001203245) 87 NM_001203245 6204 Hs.406620 NM_001014 HPRD:04697 RPS10 DBA9|S10 ribosomal protein S10 protein-coding 561_WT_peak_6450 chr6 116989850 116989996 + 82 NA promoter-TSS (NM_145062) promoter-TSS (NM_145062) 50 NM_145062 221302 Hs.29857 NM_145062 HPRD:12840 ZUFSP C6orf113|dJ412I7.3 zinc finger with UFM1-specific peptidase domain protein-coding 561_WT_peak_2109 chr13 114913941 114914278 + 82 NA Intergenic Intergenic -16014 NM_007368 22821 Hs.593075 NM_007368 HPRD:05537 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 561_WT_peak_863 chr10 6092909 6093266 + 82 NA intron (NM_000417, intron 1 of 7) intron (NM_000417, intron 1 of 7) 11246 NM_000417 3559 Hs.231367 NM_000417 HPRD:00986 IL2RA CD25|IDDM10|IL2R|TCGFR|p55 interleukin 2 receptor, alpha protein-coding 561_WT_peak_4595 chr20 30102290 30102465 + 82 NA exon (NM_030789, exon 1 of 12) exon (NM_030789, exon 1 of 12) 164 NM_178582 81502 Hs.373741 NM_030789 HPRD:06166 HM13 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1|dJ324O17.1 histocompatibility (minor) 13 protein-coding 561_WT_peak_3907 chr19 56826127 56826467 + 82 NA Intergenic CpG -53171 NR_003127 147947 Hs.467326 NM_194319 HPRD:15828 ZNF542P ZNF542 zinc finger protein 542, pseudogene pseudo 561_WT_peak_5359 chr3 188156928 188157102 + 82 NA intron (NM_001167671, intron 3 of 10) intron (NM_001167671, intron 3 of 10) 129439 NR_046623 100873917 Hs.674993 NR_046623 LPP-AS1 - LPP antisense RNA 1 ncRNA 561_WT_peak_3787 chr19 44258885 44259095 + 82 NA 5' UTR (NM_019108, exon 1 of 14) 5' UTR (NM_019108, exon 1 of 14) 152 NM_019108 56006 Hs.466875 NM_019108 HPRD:07800 SMG9 C19orf61|F17127_1 SMG9 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_1895 chr12 122017806 122017951 + 82 NA intron (NM_032590, intron 1 of 22) intron (NM_032590, intron 1 of 22) 486 NM_001005366 84678 Hs.524800 NM_032590 HPRD:12362 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine (K)-specific demethylase 2B protein-coding 561_WT_peak_4588 chr20 25604732 25605171 + 82 NA promoter-TSS (NM_152667) promoter-TSS (NM_152667) -303 NM_152667 140838 Hs.143137 NM_152667 HPRD:17097 NANP C20orf147|HDHD4|dJ694B14.3 N-acetylneuraminic acid phosphatase protein-coding 561_WT_peak_2447 chr15 42565381 42565569 + 82 NA promoter-TSS (NM_198141) promoter-TSS (NM_198141) 307 NM_001286487 25963 Hs.511138 NM_015497 ENSG00000103978 TMEM87A - transmembrane protein 87A protein-coding 561_WT_peak_3964 chr2 10829893 10830378 + 82 NA promoter-TSS (NM_001261394) promoter-TSS (NM_001261394) -22 NR_048552 79954 Hs.222494 NM_024894 HPRD:07849 NOL10 PQBP5 nucleolar protein 10 protein-coding 561_WT_peak_311 chr1 89458061 89458365 + 82 NA intron (NM_001162536, intron 1 of 2) CpG 430 NM_019610 494115 Hs.481898 NM_019610 HPRD:17417 RBMXL1 RBM1 RNA binding motif protein, X-linked-like 1 protein-coding 561_WT_peak_2747 chr16 27181013 27181437 + 82 NA Intergenic MLT1N2|LTR|ERVL-MaLR -33582 NM_024773 79831 Hs.145717 NM_024773 HPRD:07836 KDM8 JMJD5 lysine (K)-specific demethylase 8 protein-coding 561_WT_peak_4802 chr21 40817778 40818025 + 82 NA intron (NM_001001713, intron 1 of 6) CpG 104 NM_001001713 6450 Hs.473847 NM_007341 HPRD:03753 SH3BGR 21-GARP SH3 domain binding glutamate-rich protein protein-coding 561_WT_peak_7048 chr8 67974732 67974943 + 82 NA promoter-TSS (NM_006837) promoter-TSS (NM_006837) -275 NM_006837 10987 Hs.491912 NM_006837 HPRD:06888 COPS5 CSN5|JAB1|MOV-34|SGN5 COP9 signalosome subunit 5 protein-coding 561_WT_peak_1098 chr10 94050889 94051296 + 82 NA promoter-TSS (NM_014912) promoter-TSS (NM_014912) 172 NM_017824 54708 Hs.573490 NM_017824 HPRD:07909 MARCH5 MARCH-V|MITOL|RNF153 membrane-associated ring finger (C3HC4) 5 protein-coding 561_WT_peak_1898 chr12 122232190 122232362 + 82 NA promoter-TSS (NM_019034) promoter-TSS (NM_019034) -682 NM_019034 54509 Hs.644504 NM_019034 HPRD:15246 RHOF ARHF|RIF ras homolog family member F (in filopodia) protein-coding 561_WT_peak_1509 chr11 120215064 120215277 + 82 NA intron (NM_015313, intron 1 of 40) intron (NM_015313, intron 1 of 40) 7552 NM_001198665 23365 Hs.24598 NM_015313 HPRD:09207 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor (GEF) 12 protein-coding 561_WT_peak_1766 chr12 72057069 72057347 + 82 NA promoter-TSS (NM_031435) promoter-TSS (NM_031435) -469 NM_031435 83591 Hs.245798 NM_031435 HPRD:10896 THAP2 - THAP domain containing, apoptosis associated protein 2 protein-coding 561_WT_peak_1810 chr12 95611584 95611938 + 82 NA promoter-TSS (NM_018351) promoter-TSS (NM_018351) 239 NM_017599 55591 Hs.24135 NM_017599 HPRD:11671 VEZT VEZATIN vezatin, adherens junctions transmembrane protein protein-coding 561_WT_peak_1392 chr11 67396814 67397205 + 82 NA intron (NM_181843, intron 1 of 2) CpG 399 NM_001243750 254552 Hs.433329 NM_181843 HPRD:17652 NUDT8 - nudix (nucleoside diphosphate linked moiety X)-type motif 8 protein-coding 561_WT_peak_1664 chr12 46608865 46609067 + 82 NA intron (NM_001278387, intron 6 of 17) intron (NM_001278387, intron 6 of 17) 51312 NM_001278389 81539 Hs.533770 NM_030674 HPRD:12245 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38, member 1 protein-coding 561_WT_peak_7394 chr9 114936718 114937145 + 82 NA intron (NM_001282640, intron 1 of 17) intron (NM_001282640, intron 1 of 17) 646 NM_022486 64420 Hs.494827 NM_022486 HPRD:15452 SUSD1 - sushi domain containing 1 protein-coding 561_WT_peak_3584 chr19 4124191 4124379 + 82 NA promoter-TSS (NM_030662) promoter-TSS (NM_030662) -159 NM_030662 5605 Hs.465627 NM_030662 HPRD:03164 MAP2K2 CFC4|MAPKK2|MEK2|MKK2|PRKMK2 mitogen-activated protein kinase kinase 2 protein-coding 561_WT_peak_1832 chr12 104359710 104359977 + 82 NA intron (NM_003211, intron 1 of 9) CpG 250 NM_003211 6996 Hs.584809 NM_003211 HPRD:03251 TDG hTDG thymine-DNA glycosylase protein-coding 561_WT_peak_734 chr1 221886536 221886743 + 82 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 23603 NR_111939 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 561_WT_peak_2037 chr13 48612067 48612350 + 82 NA intron (NM_018283, intron 1 of 2) CpG 505 NM_018283 55270 Hs.144407 NM_018283 HPRD:14848 NUDT15 MTH2 nudix (nucleoside diphosphate linked moiety X)-type motif 15 protein-coding 561_WT_peak_7327 chr9 88897696 88897994 + 82 NA promoter-TSS (NM_030940) promoter-TSS (NM_030940) -355 NM_030940 81689 Hs.449291 NM_030940 HPRD:17091 ISCA1 HBLD2|ISA1|hIscA iron-sulfur cluster assembly 1 protein-coding 561_WT_peak_2741 chr16 24551082 24551571 + 82 NA 5' UTR (NM_006910, exon 1 of 18) 5' UTR (NM_006910, exon 1 of 18) 418 NM_032626 5930 Hs.188553 NM_006910 HPRD:02964 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA retinoblastoma binding protein 6 protein-coding 561_WT_peak_3265 chr17 56413185 56413466 + 82 NA promoter-TSS (NR_039889) promoter-TSS (NR_039889) 58 NR_039889 100616220 NR_039889 miRBase:MI0017373 MIR4736 - microRNA 4736 ncRNA 561_WT_peak_1301 chr11 59578172 59578459 + 82 NA promoter-TSS (NM_017840) promoter-TSS (NM_017840) 30 NM_017840 54948 Hs.530734 NM_017840 HPRD:14743 MRPL16 L16mt|MRP-L16 mitochondrial ribosomal protein L16 protein-coding 561_WT_peak_2905 chr16 74528057 74528286 + 82 NA intron (NR_027264, intron 6 of 26) intron (NR_027264, intron 6 of 26) -72803 NM_001011880 497190 Hs.454670 NM_001011880 HPRD:17419 CLEC18B MRCL2 C-type lectin domain family 18, member B protein-coding 561_WT_peak_4851 chr22 21983794 21984037 + 82 NA exon (NM_001017964, exon 2 of 5) exon (NM_001017964, exon 2 of 5) 425 NM_001017964 150223 Hs.355952 NM_001017964 HPRD:18559 YDJC - YdjC homolog (bacterial) protein-coding 561_WT_peak_7287 chr9 71394564 71394821 + 82 NA promoter-TSS (NM_138333) promoter-TSS (NM_138333) -272 NM_138333 116224 Hs.655572 NM_138333 HPRD:10074 FAM122A C9orf42 family with sequence similarity 122A protein-coding 561_WT_peak_5372 chr3 196669211 196669501 + 82 NA promoter-TSS (NR_024388) promoter-TSS (NR_024388) 108 NM_007362 22916 Hs.591671 NM_007362 HPRD:05503 NCBP2 CBC2|CBP20|NIP1 nuclear cap binding protein subunit 2, 20kDa protein-coding 561_WT_peak_1298 chr11 59333801 59334038 + 82 NA Intergenic tRNA-Phe-TTY|tRNA|tRNA 28712 NR_036120 100422880 NR_036120 MIR3162 - microRNA 3162 ncRNA 561_WT_peak_1924 chr12 128044404 128044640 + 82 NA Intergenic Intergenic 76490 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LOC101927637 - uncharacterized LOC101927637 ncRNA 561_WT_peak_1334 chr11 64645984 64646232 + 82 NA 5' UTR (NM_006795, exon 1 of 5) 5' UTR (NM_006795, exon 1 of 5) 132 NM_006795 10938 Hs.523774 NM_006795 HPRD:09325 EHD1 H-PAST|HPAST1|PAST|PAST1 EH-domain containing 1 protein-coding 561_WT_peak_6455 chr6 119215775 119216345 + 82 NA intron (NM_014034, intron 1 of 3) CpG 819 NM_014034 25842 Hs.292316 NM_014034 HPRD:16459 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 561_WT_peak_1447 chr11 88070806 88071038 + 82 NA promoter-TSS (NM_001114173) promoter-TSS (NM_001114173) 19 NM_001114173 1075 Hs.128065 NM_001814 HPRD:03841 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 561_WT_peak_6895 chr7 149562738 149562853 + 82 NA 3' UTR (NM_001099220, exon 8 of 8) 3' UTR (NM_001099220, exon 8 of 8) -7262 NM_145230 155066 Hs.556998 NM_145230 HPRD:12920 ATP6V0E2 ATP6V0E2L|C7orf32 ATPase, H+ transporting V0 subunit e2 protein-coding 561_WT_peak_1610 chr12 12867419 12867846 + 82 NA Intergenic Intergenic -2572 NM_004064 1027 Hs.238990 NM_004064 HPRD:02867 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin-dependent kinase inhibitor 1B (p27, Kip1) protein-coding 561_WT_peak_7190 chr8 145734175 145734589 + 82 NA promoter-TSS (NM_138431) promoter-TSS (NM_138431) -170 NM_138431 113655 Hs.7678 NM_138431 HPRD:14003 MFSD3 - major facilitator superfamily domain containing 3 protein-coding 561_WT_peak_172 chr1 35734263 35734557 + 82 NA promoter-TSS (NM_005095) promoter-TSS (NM_005095) -158 NM_005095 9202 Hs.269211 NM_005095 HPRD:10326 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger, MYM-type 4 protein-coding 561_WT_peak_6657 chr7 44529986 44530452 + 82 NA 5' UTR (NM_015332, exon 1 of 6) 5' UTR (NM_015332, exon 1 of 6) 166 NM_015332 23386 Hs.488171 NM_015332 NUDCD3 NudCL NudC domain containing 3 protein-coding 561_WT_peak_2387 chr14 104095419 104095801 + 82 NA promoter-TSS (NM_001130107) promoter-TSS (NM_001130107) 85 NM_005552 3831 Hs.20107 NM_005552 HPRD:02489 KLC1 KLC|KNS2|KNS2A kinesin light chain 1 protein-coding 561_WT_peak_6002 chr5 158690068 158690633 + 81 NA 5' UTR (NM_145049, exon 1 of 11) 5' UTR (NM_145049, exon 1 of 11) 261 NM_145049 134510 Hs.591733 NM_145049 HPRD:08318 UBLCP1 CPUB1 ubiquitin-like domain containing CTD phosphatase 1 protein-coding 561_WT_peak_3419 chr18 3526038 3526239 + 81 NA intron (NM_001242764, intron 7 of 9) intron (NM_001242764, intron 7 of 9) 59890 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 LOC100505592 - uncharacterized LOC100505592 ncRNA 561_WT_peak_4885 chr22 31365306 31365842 + 81 NA non-coding (NR_002323, exon 1 of 3) non-coding (NR_002323, exon 1 of 3) 377 NR_110492 55000 Hs.554829 NR_002323 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 (non-protein coding) ncRNA 561_WT_peak_4781 chr21 35720306 35720478 + 81 NA Intergenic Intergenic -15931 NM_172201 9992 Hs.551521 NM_172201 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel, Isk-related family, member 2 protein-coding 561_WT_peak_1354 chr11 65192492 65193279 + 81 NA non-coding (NR_028272, exon 1 of 1) non-coding (NR_028272, exon 1 of 1) 2616 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_6428 chr6 109217359 109217540 + 81 NA intron (NM_032131, intron 6 of 17) intron (NM_032131, intron 6 of 17) 27857 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 561_WT_peak_3188 chr17 41277634 41277650 + 81 NA promoter-TSS (NM_007300) promoter-TSS (NM_007300) 42 NR_003108 10230 Hs.373818 NM_005821 HPRD:10115 NBR2 NCRNA00192 neighbor of BRCA1 gene 2 (non-protein coding) ncRNA 561_WT_peak_1295 chr11 59323840 59324087 + 81 NA Intergenic tRNA-Lys-AAA|tRNA|tRNA 38668 NR_036120 100422880 NR_036120 MIR3162 - microRNA 3162 ncRNA 561_WT_peak_4723 chr20 62257824 62258055 + 81 NA intron (NM_012384, intron 1 of 9) CpG 442 NM_012384 26205 Hs.473286 NM_012384 HPRD:16245 GMEB2 P79PIF|PIF79 glucocorticoid modulatory element binding protein 2 protein-coding 561_WT_peak_6132 chr6 25138773 25139012 + 81 NA promoter-TSS (NR_027626) promoter-TSS (NR_027626) -272 NR_027626 8418 Hs.484918 NR_002174 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 561_WT_peak_1081 chr10 88853996 88854580 + 81 NA promoter-TSS (NM_019054) promoter-TSS (NM_019054) 488 NM_005271 2746 Hs.500409 NM_005271 HPRD:11748 GLUD1 GDH|GDH1|GLUD glutamate dehydrogenase 1 protein-coding 561_WT_peak_4767 chr21 33032015 33032197 + 81 NA exon (NM_000454, exon 1 of 5) exon (NM_000454, exon 1 of 5) 171 NM_000454 6647 Hs.443914 NM_000454 HPRD:00937 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1, soluble protein-coding 561_WT_peak_1158 chr10 121298216 121298386 + 81 NA intron (NM_001005339, intron 1 of 4) intron (NM_001005339, intron 1 of 4) -2256 NM_002925 6001 Hs.501200 NM_002925 HPRD:04172 RGS10 - regulator of G-protein signaling 10 protein-coding 561_WT_peak_2054 chr13 50698308 50698521 + 81 NA intron (NR_109974, intron 2 of 6) CpG 1263 NR_002612 8847 Hs.547964 NR_002612 DLEU2 1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 (non-protein coding) ncRNA 561_WT_peak_3093 chr17 27182032 27182224 + 81 NA promoter-TSS (NM_005702) promoter-TSS (NM_005702) 85 NM_005702 26284 Hs.3426 NM_005702 HPRD:08466 ERAL1 ERA|ERAL1A|H-ERA|HERA-A|HERA-B Era-like 12S mitochondrial rRNA chaperone 1 protein-coding 561_WT_peak_3672 chr19 17186089 17186334 + 81 NA promoter-TSS (NM_004145) promoter-TSS (NM_004145) 132 NM_001011699 93323 Hs.404088 NM_033417 HPRD:11318 HAUS8 DGT4|HICE1|NY-SAR-48 HAUS augmin-like complex, subunit 8 protein-coding 561_WT_peak_7616 chrX 134518161 134518463 + 81 NA Intergenic Intergenic -12042 NR_104652 100506790 Hs.161358 NR_104652 ENSG00000229015 LOC100506790 - uncharacterized LOC100506790 ncRNA 561_WT_peak_4051 chr2 44222894 44223079 + 81 NA exon (NM_133259, exon 1 of 38) exon (NM_133259, exon 1 of 38) 158 NM_133259 10128 Hs.368084 NM_133259 HPRD:06343 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine-rich pentatricopeptide repeat containing protein-coding 561_WT_peak_1243 chr11 33278975 33279394 + 81 NA promoter-TSS (NM_001278162) promoter-TSS (NM_001278162) 316 NM_005734 10114 Hs.201918 NM_005734 HPRD:05111 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 561_WT_peak_5926 chr5 134094108 134094635 + 81 NA promoter-TSS (NM_014829) promoter-TSS (NM_014829) -53 NR_125341 9879 Hs.406549 NM_014829 HPRD:10862 DDX46 PRPF5|Prp5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 protein-coding 561_WT_peak_3149 chr17 37023832 37024071 + 81 NA Intergenic tRNA-Cys-TGY|tRNA|tRNA -2161 NR_073384 3927 Hs.741156 NM_006148 HPRD:04229 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 561_WT_peak_7259 chr9 37800615 37800797 + 81 NA promoter-TSS (NM_024345) promoter-TSS (NM_024345) -77 NM_024345 79269 Hs.118394 NM_024345 HPRD:08319 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 561_WT_peak_3746 chr19 37568928 37569415 + 81 NA promoter-TSS (NM_144689) promoter-TSS (NM_144689) -211 NM_144689 147923 Hs.444992 NM_144689 HPRD:08122 ZNF420 APAK zinc finger protein 420 protein-coding 561_WT_peak_5826 chr5 77655845 77656310 + 81 NA promoter-TSS (NM_004866) promoter-TSS (NM_004866) -250 NR_110885 9522 Hs.482587 NM_004866 HPRD:06072 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 561_WT_peak_700 chr1 205744540 205744748 + 81 NA promoter-TSS (NM_001135664) promoter-TSS (NM_001135664) -34 NM_001135664 8934 Hs.115325 NM_003929 HPRD:11962 RAB29 RAB7L|RAB7L1 RAB29, member RAS oncogene family protein-coding 561_WT_peak_2503 chr15 60690435 60690905 + 81 NA promoter-TSS (NM_001136015) promoter-TSS (NM_001136015) -485 NM_004039 302 Hs.511605 NM_004039 HPRD:01061 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 561_WT_peak_5842 chr5 81972528 81972717 + 81 NA Intergenic Intergenic -163352 NR_039773 100616297 NR_039773 MIR3977 - microRNA 3977 ncRNA 561_WT_peak_4294 chr2 129079432 129079646 + 81 NA Intergenic Intergenic -3368 NM_004807 9394 Hs.512841 NM_004807 HPRD:07274 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 561_WT_peak_4320 chr2 143886346 143886556 + 81 NA promoter-TSS (NM_018460) promoter-TSS (NM_018460) -448 NM_018460 55843 Hs.171011 NM_018460 HPRD:06447 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 561_WT_peak_6093 chr6 7389628 7390357 + 81 NA promoter-TSS (NM_031480) promoter-TSS (NM_031480) -50 NM_001170693 285782 Hs.721486 NM_175745 HPRD:10511 CAGE1 CT3|CT95|CTAG3|bA69L16.7 cancer antigen 1 protein-coding 561_WT_peak_6747 chr7 91569979 91570590 + 81 NA promoter-TSS (NM_005751) promoter-TSS (NM_005751) 95 NM_005751 10142 Hs.651221 NM_005751 HPRD:04921 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A kinase (PRKA) anchor protein 9 protein-coding 561_WT_peak_4988 chr3 4887673 4887898 + 81 NA intron (NM_001168272, intron 60 of 60) intron (NM_001168272, intron 60 of 60) -52125 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 561_WT_peak_1738 chr12 57916598 57916792 + 81 NA promoter-TSS (NM_052897) promoter-TSS (NM_052897) 36 NM_052897 114785 Hs.524523 NM_052897 HPRD:11296 MBD6 - methyl-CpG binding domain protein 6 protein-coding 561_WT_peak_6689 chr7 66146782 66147019 + 81 NA promoter-TSS (NM_001287060) promoter-TSS (NM_001287060) -178 NR_104676 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor (GEF) 1 protein-coding 561_WT_peak_6858 chr7 138145179 138145351 + 81 NA 5' UTR (NM_015905, exon 1 of 19) 5' UTR (NM_015905, exon 1 of 19) 186 NM_015905 8805 Hs.490287 NM_003852 HPRD:04556 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 561_WT_peak_3000 chr17 5322473 5323042 + 81 NA promoter-TSS (NM_001160266) promoter-TSS (NM_001160266) -204 NM_001160266 84268 Hs.462086 NM_032308 HPRD:14615 RPAIN HRIP|RIP RPA interacting protein protein-coding 561_WT_peak_1851 chr12 110905850 110906036 + 81 NA promoter-TSS (NM_013300) promoter-TSS (NM_013300) 146 NM_001164373 51184 Hs.634680 NM_016301 HPRD:17498 GPN3 ATPBD1C GPN-loop GTPase 3 protein-coding 561_WT_peak_7448 chr9 131902451 131902796 + 81 NA intron (NM_001271832, intron 7 of 8) intron (NM_001271832, intron 7 of 8) 28656 NM_001193397 5524 Hs.400740 NM_021131 HPRD:02858 PPP2R4 PP2A|PR53|PTPA protein phosphatase 2A activator, regulatory subunit 4 protein-coding 561_WT_peak_6576 chr7 4681508 4681773 + 81 NA Intergenic CpG -40290 NM_001037165 221937 Hs.487393 NM_001037165 HPRD:18750 FOXK1 FOXK1L forkhead box K1 protein-coding 561_WT_peak_3383 chr17 79268781 79269050 + 81 NA 5' UTR (NM_001037984, exon 1 of 16) 5' UTR (NM_001037984, exon 1 of 16) 224 NM_001037984 124565 Hs.352240 NM_138570 HPRD:17506 SLC38A10 - solute carrier family 38, member 10 protein-coding 561_WT_peak_4320-2 chr2 143886702 143886974 + 81 NA promoter-TSS (NM_018460) promoter-TSS (NM_018460) -61 NM_018460 55843 Hs.171011 NM_018460 HPRD:06447 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 561_WT_peak_1168 chr10 129985773 129985845 + 81 NA Intergenic Intergenic -61341 NM_001145966 4288 Hs.80976 NM_002417 HPRD:08902 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 561_WT_peak_4859 chr22 24951531 24952042 + 81 NA promoter-TSS (NM_001284255) promoter-TSS (NM_001284255) 117 NM_001284251 83606 Hs.9850 NM_031444 HPRD:12796 GUCD1 C22orf13|LLN4 guanylyl cyclase domain containing 1 protein-coding 561_WT_peak_6 chr1 1034419 1035246 + 81 NA intron (NM_017891, intron 1 of 9) L1M5|LINE|L1 16904 NM_017891 54991 Hs.235095 NM_017891 HPRD:07930 C1orf159 - chromosome 1 open reading frame 159 protein-coding 561_WT_peak_6501 chr6 144385328 144385562 + 81 NA intron (NM_001289043, intron 1 of 6) CpG 290 NM_001080955 5325 Hs.743225 NM_002656 HPRD:16010 PLAGL1 LOT1|ZAC|ZAC1 pleiomorphic adenoma gene-like 1 protein-coding 561_WT_peak_1090 chr10 91174569 91174834 + 81 NA intron (NM_012420, intron 1 of 1) CpG 376 NM_012420 24138 Hs.252839 NM_012420 HPRD:17130 IFIT5 P58|RI58 interferon-induced protein with tetratricopeptide repeats 5 protein-coding 561_WT_peak_5358 chr3 187872094 187872367 + 81 NA promoter-TSS (NR_036497) promoter-TSS (NR_036497) -354 NR_036497 339929 Hs.596639 NR_036497 ENSG00000270959 LPP-AS2 - LPP antisense RNA 2 ncRNA 561_WT_peak_2253-2 chr14 64331402 64331802 + 81 NA intron (NM_182914, intron 1 of 115) intron (NM_182914, intron 1 of 115) 11919 NM_182914 23224 Hs.745014 NM_015180 HPRD:09763 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing, nuclear envelope 2 protein-coding 561_WT_peak_6687 chr7 65958225 65958607 + 81 NA Intergenic Intergenic -93021 NR_026873 285908 Hs.50755 NM_181722 HPRD:14160 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 561_WT_peak_4765 chr21 32726988 32727317 + 81 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 204138 NM_003253 7074 Hs.517228 NM_003253 HPRD:02820 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 561_WT_peak_7440 chr9 131133675 131133886 + 81 NA intron (NM_001135947, intron 1 of 3) CpG 182 NR_049743 81605 Hs.495229 NM_030914 URM1 C9orf74 ubiquitin related modifier 1 protein-coding 561_WT_peak_7524 chrX 40943465 40943675 + 81 NA Intergenic Intergenic -1318 NM_001039590 8239 Hs.77578 NM_004652 HPRD:02091 USP9X DFFRX|FAF|FAM|MRX99 ubiquitin specific peptidase 9, X-linked protein-coding 561_WT_peak_2609 chr15 91396043 91396303 + 81 NA Intergenic Intergenic -15649 NM_002569 5045 Hs.513153 NM_002569 HPRD:00653 FURIN FUR|PACE|PCSK3|SPC1 furin (paired basic amino acid cleaving enzyme) protein-coding 561_WT_peak_2253 chr14 64331135 64331294 + 81 NA intron (NM_182914, intron 1 of 115) intron (NM_182914, intron 1 of 115) 11531 NM_182914 23224 Hs.745014 NM_015180 HPRD:09763 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing, nuclear envelope 2 protein-coding 561_WT_peak_327 chr1 93646082 93646645 + 81 NA promoter-TSS (NM_001167830) promoter-TSS (NM_001167830) 90 NM_206886 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 561_WT_peak_7068 chr8 91013343 91013661 + 81 NA promoter-TSS (NM_001359) promoter-TSS (NM_001359) -78 NM_001359 1666 Hs.492212 NM_001359 HPRD:01959 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl CoA reductase 1, mitochondrial protein-coding 561_WT_peak_75 chr1 16302421 16302586 + 81 NA 5' UTR (NM_003443, exon 1 of 16) 5' UTR (NM_003443, exon 1 of 16) 124 NM_001287603 7709 Hs.433764 NM_003443 HPRD:04968 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 561_WT_peak_1976 chr13 30920665 30920904 + 81 NA intron (NR_024464, intron 4 of 4) intron (NR_024464, intron 4 of 4) 27267 NR_024464 100188949 Hs.439791 NR_024464 ENSG00000238121 LINC00426 - long intergenic non-protein coding RNA 426 ncRNA 561_WT_peak_6424 chr6 107781044 107781260 + 81 NA promoter-TSS (NM_020381) promoter-TSS (NM_020381) -373 NM_020381 57107 Hs.745008 NM_020381 HPRD:12879 PDSS2 C6orf210|COQ10D3|DLP1|bA59I9.3|hDLP1 prenyl (decaprenyl) diphosphate synthase, subunit 2 protein-coding 561_WT_peak_1376 chr11 65868515 65868591 + 81 NA intron (NM_018026, intron 1 of 23) MLT1G1|LTR|ERVL-MaLR 30729 NM_018026 55690 Hs.644326 NM_018026 HPRD:06320 PACS1 MRD17 phosphofurin acidic cluster sorting protein 1 protein-coding 561_WT_peak_1467 chr11 104576359 104576901 + 81 NA Intergenic Intergenic -96600 NR_120585 102723895 Hs.48803 NR_120585 LOC102723895 - uncharacterized LOC102723895 ncRNA 561_WT_peak_1100 chr10 94352992 94353282 + 81 NA exon (NM_004523, exon 1 of 22) exon (NM_004523, exon 1 of 22) 312 NM_004523 3832 Hs.8878 NM_004523 HPRD:01023 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 561_WT_peak_3742 chr19 37178106 37178455 + 81 NA promoter-TSS (NR_110707) promoter-TSS (NR_110707) 71 NR_110708 101927621 Hs.125653 NR_110707 LOC101927621 - uncharacterized LOC101927621 ncRNA 561_WT_peak_3643 chr19 13263889 13264248 + 81 NA exon (NM_004907, exon 2 of 2) exon (NM_004907, exon 2 of 2) 2786 NM_004907 9592 Hs.501629 NM_004907 HPRD:09997 IER2 ETR101 immediate early response 2 protein-coding 561_WT_peak_2744 chr16 25268854 25269254 + 81 NA promoter-TSS (NM_001012981) promoter-TSS (NM_001012981) -199 NM_001012981 342357 Hs.513451 NM_001012981 HPRD:11268 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 561_WT_peak_2677 chr16 3550792 3551021 + 81 NA promoter-TSS (NM_015041) promoter-TSS (NM_015041) -39 NM_015041 23059 Hs.155995 NM_015041 HPRD:10013 CLUAP1 CFAP22|FAP22 clusterin associated protein 1 protein-coding 561_WT_peak_1482 chr11 111636840 111637010 + 81 NA intron (NM_181699, intron 1 of 15) CpG 244 NM_001177562 5519 Hs.269128 NM_002716 HPRD:04384 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2, regulatory subunit A, beta protein-coding 561_WT_peak_1383 chr11 66610565 66610770 + 81 NA promoter-TSS (NM_001032279) promoter-TSS (NM_001032279) -216 NM_001032279 9986 Hs.654972 NM_005133 HPRD:07289 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 561_WT_peak_6470 chr6 130834893 130835175 + 81 NA Intergenic Intergenic 76772 NM_052913 114801 Hs.591341 NM_052913 HPRD:13901 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 561_WT_peak_886 chr10 11445328 11445483 + 81 NA Intergenic Intergenic 128874 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 561_WT_peak_3395 chr17 80231141 80231328 + 80 NA exon (NM_001893, exon 1 of 9) exon (NM_001893, exon 1 of 9) 360 NM_139062 1453 Hs.631725 NM_001893 HPRD:02920 CSNK1D ASPS|CKIdelta|FASPS2|HCKID casein kinase 1, delta protein-coding 561_WT_peak_3811 chr19 46320485 46320691 + 80 NA intron (NM_004819, intron 23 of 26) intron (NM_004819, intron 23 of 26) -1983 NM_030785 81492 Hs.146544 NM_030785 HPRD:09611 RSPH6A RSHL1|RSP4|RSP6|RSPH4B radial spoke head 6 homolog A (Chlamydomonas) protein-coding 561_WT_peak_4780 chr21 35320897 35321247 + 80 NA promoter-TSS (NM_001288961) promoter-TSS (NM_001288961) -158 NM_001288961 400863 Hs.729814 NM_207472 LOC400863 - uncharactered LOC400863 protein-coding 561_WT_peak_3148 chr17 37010196 37010383 + 80 NA promoter-TSS (NM_000978) promoter-TSS (NM_000978) -236 NM_000978 9349 Hs.406300 NM_000978 RPL23 L23|rpL17 ribosomal protein L23 protein-coding 561_WT_peak_4164 chr2 85152934 85153165 + 80 NA Intergenic Intergenic 20286 NM_021103 9168 Hs.446574 NM_021103 HPRD:01779 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 561_WT_peak_1477 chr11 108368478 108368890 + 80 NA intron (NM_153705, intron 1 of 7) CpG 475 NM_153705 143888 Hs.83286 NM_153705 HPRD:13773 KDELC2 - KDEL (Lys-Asp-Glu-Leu) containing 2 protein-coding 561_WT_peak_396 chr1 114889233 114889457 + 80 NA Intergenic Intergenic 164436 NM_015906 51592 Hs.26837 NM_015906 HPRD:10423 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 561_WT_peak_2441 chr15 41694545 41694892 + 80 NA promoter-TSS (NR_045620) promoter-TSS (NR_045620) -60 NM_016013 51103 Hs.106529 NM_016013 HPRD:09500 NDUFAF1 CGI65|CIA30 NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 protein-coding 561_WT_peak_4947 chr22 42394829 42395201 + 80 NA TTS (NM_019106) TTS (NM_019106) 286 NM_152613 164684 Hs.655541 NM_152613 HPRD:14512 WBP2NL PAWP WBP2 N-terminal like protein-coding 561_WT_peak_3552 chr19 892987 893279 + 80 NA promoter-TSS (NM_005481) promoter-TSS (NM_005481) 85 NM_005481 10025 Hs.365207 NM_005481 HPRD:06816 MED16 DRIP92|THRAP5|TRAP95 mediator complex subunit 16 protein-coding 561_WT_peak_4762 chr21 32090666 32090931 + 80 NA TTS (NM_001164435) TTS (NM_001164435) 297 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 561_WT_peak_7255 chr9 37079392 37079629 + 80 NA promoter-TSS (NR_036592) promoter-TSS (NR_036592) -383 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000233137 EBLN3 - endogenous Bornavirus-like nucleoprotein 3 pseudo 561_WT_peak_4375 chr2 177796600 177796971 + 80 NA Intergenic Intergenic -280637 NM_194247 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 561_WT_peak_6686 chr7 65579702 65580071 + 80 NA promoter-TSS (NM_014478) promoter-TSS (NM_014478) 81 NM_014478 27297 Hs.300684 NM_014478 HPRD:12089 CRCP CGRP-RCP|CGRPRCP|RCP|RCP9 CGRP receptor component protein-coding 561_WT_peak_6916 chr7 156686053 156686359 + 80 NA promoter-TSS (NM_022458) promoter-TSS (NM_022458) -304 NM_022458 64327 Hs.209989 NM_022458 HPRD:05700 LMBR1 ACHP|C7orf2|DIF14|PPD2|TPT|ZRS limb development membrane protein 1 protein-coding 561_WT_peak_6994 chr8 42010947 42011153 + 80 NA intron (NM_006803, intron 1 of 8) CpG 586 NM_006803 10947 Hs.654529 NM_006803 HPRD:09801 AP3M2 AP47B|CLA20|P47B adaptor-related protein complex 3, mu 2 subunit protein-coding 561_WT_peak_4997 chr3 9404635 9405181 + 80 NA 5' UTR (NM_015453, exon 1 of 10) 5' UTR (NM_015453, exon 1 of 10) 191 NM_015453 25917 Hs.443081 NM_015453 HPRD:15507 THUMPD3 - THUMP domain containing 3 protein-coding 561_WT_peak_3014 chr17 7358759 7358935 + 80 NA intron (NM_000747, intron 9 of 10) intron (NM_000747, intron 9 of 10) 10441 NM_000747 1140 Hs.330386 NM_000747 HPRD:01156 CHRNB1 ACHRB|CHRNB|CMS1D|CMS2A|SCCMS cholinergic receptor, nicotinic, beta 1 (muscle) protein-coding 561_WT_peak_382 chr1 112135467 112135747 + 80 NA Intergenic Intergenic 15333 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 561_WT_peak_6131 chr6 25138303 25138667 + 80 NA promoter-TSS (NR_002174) promoter-TSS (NR_002174) 135 NR_027626 8418 Hs.484918 NR_002174 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 561_WT_peak_7118 chr8 118533040 118533292 + 80 NA exon (NM_080651, exon 1 of 4) exon (NM_080651, exon 1 of 4) 214 NM_080651 90390 Hs.492612 NM_080651 HPRD:11631 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 561_WT_peak_2567 chr15 78730158 78730513 + 80 NA promoter-TSS (NM_004136) promoter-TSS (NM_004136) -183 NM_004136 3658 Hs.436031 NM_004136 HPRD:08858 IREB2 ACO3|IRP2|IRP2AD iron-responsive element binding protein 2 protein-coding 561_WT_peak_2417 chr15 31727124 31727501 + 80 NA Intergenic Intergenic 108229 NM_015995 51621 Hs.525752 NM_015995 HPRD:05620 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 protein-coding 561_WT_peak_6784 chr7 102066535 102066738 + 80 NA non-coding (NR_038967, exon 9 of 9) non-coding (NR_038967, exon 9 of 9) -7341 NM_001126340 80228 Hs.363308 NM_032831 HPRD:09860 ORAI2 C7orf19|CBCIP2|MEM142B|TMEM142B ORAI calcium release-activated calcium modulator 2 protein-coding 561_WT_peak_1346 chr11 65186416 65186800 + 80 NA Intergenic Intergenic -3661 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_6433 chr6 110501249 110501751 + 80 NA promoter-TSS (NM_015891) promoter-TSS (NM_015891) -124 NM_015891 51362 Hs.428147 NM_015891 HPRD:05721 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 561_WT_peak_5542 chr4 89204219 89204761 + 80 NA intron (NM_152542, intron 1 of 6) AluJb|SINE|Alu 1493 NM_152542 152926 Hs.43744 NM_152542 HPRD:15167 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent, 1K protein-coding 561_WT_peak_3347 chr17 73900764 73901419 + 80 NA promoter-TSS (NM_032478) promoter-TSS (NM_032478) 90 NM_032478 64978 Hs.442609 NM_032478 HPRD:14758 MRPL38 L38MT|MRP-L3|MRP-L38|RPML3 mitochondrial ribosomal protein L38 protein-coding 561_WT_peak_4289 chr2 128458907 128459245 + 80 NA 5' UTR (NM_032740, exon 1 of 1) 5' UTR (NM_032740, exon 1 of 1) 479 NM_032740 84826 Hs.345849 NM_032740 HPRD:14683 SFT2D3 - SFT2 domain containing 3 protein-coding 561_WT_peak_2000 chr13 40796060 40796264 + 80 NA Intergenic Intergenic -1523 NR_033877 400123 Hs.577960 NR_033877 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 561_WT_peak_5850 chr5 90676591 90676782 + 80 NA non-coding (NR_027435, exon 1 of 3) non-coding (NR_027435, exon 1 of 3) 522 NR_027435 100129716 Hs.116364 NR_027435 ARRDC3-AS1 - ARRDC3 antisense RNA 1 ncRNA 561_WT_peak_2624 chr15 94749828 94750094 + 80 NA Intergenic Intergenic -91469 NM_001159643 55784 Hs.33368 NM_018349 HPRD:07738 MCTP2 - multiple C2 domains, transmembrane 2 protein-coding 561_WT_peak_5728 chr5 43121331 43121587 + 80 NA promoter-TSS (NM_003432) promoter-TSS (NM_003432) -137 NM_003432 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 561_WT_peak_4585 chr20 24973526 24973740 + 80 NA promoter-TSS (NM_020531) promoter-TSS (NM_020531) -208 NM_020531 57136 Hs.472330 NM_020531 HPRD:09840 APMAP BSCv|C20orf3 adipocyte plasma membrane associated protein protein-coding 561_WT_peak_1374 chr11 65729237 65729420 + 80 NA exon (NM_005146, exon 1 of 20) exon (NM_005146, exon 1 of 20) 168 NM_005146 9092 Hs.502883 NM_005146 HPRD:10440 SART1 Ara1|HOMS1|SART1259|SNRNP110|Snu66 squamous cell carcinoma antigen recognized by T cells protein-coding 561_WT_peak_1956 chr13 24828651 24828937 + 80 NA promoter-TSS (NR_046531) promoter-TSS (NR_046531) -217 NR_046531 100874231 Hs.577998 NR_046531 ENSG00000227213 SPATA13-AS1 - SPATA13 antisense RNA 1 ncRNA 561_WT_peak_5442 chr4 37828166 37828498 + 80 NA promoter-TSS (NM_018290) promoter-TSS (NM_018290) 50 NM_018290 55276 Hs.23363 NM_018290 HPRD:11761 PGM2 - phosphoglucomutase 2 protein-coding 561_WT_peak_5685 chr5 34244966 34245397 + 80 NA Intergenic LTR12E|LTR|ERV1 -120548 NR_037951 100534612 Hs.171929 NR_037951 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 561_WT_peak_3625 chr19 11200803 11201007 + 80 NA intron (NM_001195799, intron 1 of 16) intron (NM_001195799, intron 1 of 16) 867 NM_001195800 3949 Hs.213289 NM_000527 HPRD:06091 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 561_WT_peak_7408 chr9 117670740 117670916 + 80 NA intron (NM_001252290, intron 2 of 4) intron (NM_001252290, intron 2 of 4) 22047 NM_001244 944 Hs.494901 NM_001244 TNFSF8 CD153|CD30L|CD30LG tumor necrosis factor (ligand) superfamily, member 8 protein-coding 561_WT_peak_6547 chr6 160148686 160149133 + 80 NA intron (NM_001270531, intron 1 of 7) CpG 377 NM_001270533 9589 Hs.446091 NM_004906 HPRD:09259 WTAP - Wilms tumor 1 associated protein protein-coding 561_WT_peak_4471 chr2 219263627 219263853 + 80 NA promoter-TSS (NM_182642) promoter-TSS (NM_182642) 679 NM_001206878 58190 Hs.444468 NM_021198 HPRD:05615 CTDSP1 NIF3|NLI-IF|NLIIF|SCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein-coding 561_WT_peak_4163 chr2 85136111 85136318 + 80 NA Intergenic Intergenic 3451 NM_021103 9168 Hs.446574 NM_021103 HPRD:01779 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 561_WT_peak_7129 chr8 124054051 124054556 + 80 NA exon (NM_001134671, exon 1 of 8) exon (NM_001134671, exon 1 of 8) 360 NM_024295 79139 Hs.241576 NM_024295 HPRD:12302 DERL1 DER-1|DER1 derlin 1 protein-coding 561_WT_peak_2050 chr13 50017937 50018197 + 80 NA promoter-TSS (NM_031915) promoter-TSS (NM_031915) 195 NM_001079670 81617 Hs.87159 NM_030925 HPRD:12993 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39-like protein-coding 561_WT_peak_6197 chr6 27114886 27115160 + 80 NA promoter-TSS (NR_036096) promoter-TSS (NR_036096) 162 NM_080596 85235 Hs.352225 NM_080596 HPRD:13655 HIST1H2AH H2A/S|H2AFALii|H2AH|dJ86C11.1 histone cluster 1, H2ah protein-coding 561_WT_peak_1112 chr10 99205460 99205656 + 80 NA promoter-TSS (NM_198046) promoter-TSS (NM_198046) 210 NM_016046 51013 Hs.632089 NM_016046 EXOSC1 CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13 exosome component 1 protein-coding 561_WT_peak_1796 chr12 92797562 92797955 + 80 NA Intergenic Intergenic -17549 NR_027932 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 protein-coding 561_WT_peak_326 chr1 93426198 93426400 + 80 NA intron (NM_001252273, intron 1 of 4) intron (NM_001252273, intron 1 of 4) 780 NM_001252269 388650 Hs.180946 NM_001006605 HPRD:14204 FAM69A - family with sequence similarity 69, member A protein-coding 561_WT_peak_3280 chr17 57906541 57907151 + 80 NA intron (NM_030938, intron 10 of 11) intron (NM_030938, intron 10 of 11) -11781 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 561_WT_peak_3020 chr17 7590027 7590251 + 80 NA promoter-TSS (NM_001143991) promoter-TSS (NM_001143991) -619 NM_001143991 55135 Hs.408312 NM_018081 HPRD:07670 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing, antisense to TP53 protein-coding 561_WT_peak_4865 chr22 29196124 29196330 + 80 NA intron (NM_001079539, intron 1 of 5) CpG 333 NM_001079539 7494 Hs.437638 NM_005080 HPRD:01908 XBP1 TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 561_WT_peak_6016 chr5 171433687 171433950 + 80 NA promoter-TSS (NM_033645) promoter-TSS (NM_033645) 59 NM_012300 23291 Hs.484138 NM_012300 HPRD:07294 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 561_WT_peak_5919 chr5 133747514 133747838 + 79 NA promoter-TSS (NM_080656) promoter-TSS (NM_080656) -78 NM_080656 91368 Hs.156506 NM_080656 HPRD:14430 CDKN2AIPNL - CDKN2A interacting protein N-terminal like protein-coding 561_WT_peak_5266 chr3 135914895 135915255 + 79 NA promoter-TSS (NM_018133) promoter-TSS (NM_018133) -387 NM_018133 55167 Hs.18631 NM_018133 HPRD:08550 MSL2 MSL-2|MSL2L1|RNF184 male-specific lethal 2 homolog (Drosophila) protein-coding 561_WT_peak_1122 chr10 102881015 102881218 + 79 NA intron (NM_001085398, intron 2 of 2) intron (NM_001085398, intron 2 of 2) 9787 NM_001085398 100038246 Hs.662323 NM_001085398 ENSG00000236311 TLX1NB APT-B7|TD1|TDI TLX1 neighbor protein-coding 561_WT_peak_7555 chrX 54071049 54071297 + 79 NA promoter-TSS (NM_015107) promoter-TSS (NM_015107) 396 NM_001184896 23133 Hs.133352 NM_015107 HPRD:06599 PHF8 JHDM1F|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 561_WT_peak_1380 chr11 66278061 66278284 + 79 NA promoter-TSS (NM_024649) promoter-TSS (NM_024649) 53 NM_024649 582 Hs.502915 NM_024649 HPRD:01950 BBS1 BBS2L2 Bardet-Biedl syndrome 1 protein-coding 561_WT_peak_4565 chr20 10427729 10427973 + 79 NA intron (NM_001009608, intron 1 of 7) L1MD2|LINE|L1 11900 NM_001009608 128710 Hs.668782 NM_001009608 HPRD:12516 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 561_WT_peak_6849 chr7 134001623 134001890 + 79 NA promoter-TSS (NM_032826) promoter-TSS (NM_032826) 71 NM_032826 84912 Hs.490181 NM_032826 HPRD:11578 SLC35B4 YEA|YEA4 solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4 protein-coding 561_WT_peak_1246 chr11 34126971 34127483 + 79 NA 5' UTR (NM_024662, exon 1 of 29) 5' UTR (NM_024662, exon 1 of 29) 116 NM_001144030 55226 Hs.577281 NM_024662 HPRD:10964 NAT10 ALP|NET43 N-acetyltransferase 10 (GCN5-related) protein-coding 561_WT_peak_1907 chr12 123431445 123431678 + 79 NA intron (NM_001243013, intron 5 of 10) intron (NM_001243013, intron 5 of 10) 19495 NM_203444 23457 Hs.511951 NM_019624 HPRD:09262 ABCB9 EST122234|TAPL ATP-binding cassette, sub-family B (MDR/TAP), member 9 protein-coding 561_WT_peak_1370 chr11 65655850 65656274 + 79 NA promoter-TSS (NM_004214) promoter-TSS (NM_004214) -52 NM_198897 9158 Hs.7768 NM_004214 HPRD:08492 FIBP FGFIBP|FIBP-1 fibroblast growth factor (acidic) intracellular binding protein protein-coding 561_WT_peak_6497 chr6 141804825 141805137 + 79 NA Intergenic Intergenic 604955 NM_002511 4829 Hs.654478 NM_002511 HPRD:01211 NMBR BB1 neuromedin B receptor protein-coding 561_WT_peak_7636 chrY 1461387 1461629 + 79 NA promoter-TSS (NM_001636).2 promoter-TSS (NM_001636).2 -469 NM_001636 293 Hs.350927 NM_001636 SLC25A6 2|3|AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 protein-coding 561_WT_peak_1201 chr11 9285378 9285595 + 79 NA intron (NM_015213, intron 1 of 22) intron (NM_015213, intron 1 of 22) 1387 NM_001243254 23258 Hs.501857 NM_015213 HPRD:11475 DENND5A RAB6IP1 DENN/MADD domain containing 5A protein-coding 561_WT_peak_346 chr1 101759079 101759331 + 79 NA Intergenic Intergenic 47246 NR_046482 100873740 NR_046482 ENSG00000207116 RNU6-31P RNU6-31|RNU6-6 RNA, U6 small nuclear 31, pseudogene snRNA 561_WT_peak_1395 chr11 67981441 67981684 + 79 NA promoter-TSS (NM_016028) promoter-TSS (NM_016028) -323 NM_001300909 51111 Hs.632120 NM_016028 HPRD:11616 SUV420H1 CGI85|KMT5B suppressor of variegation 4-20 homolog 1 (Drosophila) protein-coding 561_WT_peak_7495 chrX 2392440 2392753 + 79 NA intron (NM_145177, intron 1 of 6) intron (NM_145177, intron 1 of 6) 25984 NM_001171135 9189 Hs.131452 NM_004729 HPRD:02170 ZBED1 ALTE|DREF|TRAMP|hDREF zinc finger, BED-type containing 1 protein-coding 561_WT_peak_5150 chr3 69261565 69261805 + 79 NA intron (NM_015123, intron 11 of 22) intron (NM_015123, intron 11 of 22) -89939 NM_198271 56203 Hs.350621 NM_198271 HPRD:13993 LMOD3 - leiomodin 3 (fetal) protein-coding 561_WT_peak_3959 chr2 9922289 9922404 + 79 NA Intergenic Intergenic -61225 NM_005680 9014 Hs.584833 NM_005680 HPRD:05363 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa protein-coding 561_WT_peak_5970 chr5 142785014 142785277 + 79 NA intron (NM_001018075, intron 1 of 8) intron (NM_001018075, intron 1 of 8) -1100 NM_001018076 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 561_WT_peak_659 chr1 186344215 186344909 + 79 NA promoter-TSS (NM_017847) promoter-TSS (NM_017847) -105 NM_003292 7175 Hs.279640 NM_003292 HPRD:08927 TPR - translocated promoter region, nuclear basket protein protein-coding 561_WT_peak_5081 chr3 44803062 44803496 + 79 NA promoter-TSS (NM_020242) promoter-TSS (NM_020242) 70 NM_020242 56992 Hs.658939 NM_020242 HPRD:10037 KIF15 HKLP2|KNSL7|NY-BR-62 kinesin family member 15 protein-coding 561_WT_peak_3845 chr19 49378389 49378601 + 79 NA intron (NM_014330, intron 2 of 2) intron (NM_014330, intron 2 of 2) 2846 NM_014330 23645 Hs.631593 NM_014330 HPRD:06572 PPP1R15A GADD34 protein phosphatase 1, regulatory subunit 15A protein-coding 561_WT_peak_7026 chr8 59323914 59324133 + 79 NA exon (NM_001077619, exon 1 of 8) exon (NM_001077619, exon 1 of 8) 200 NM_001077619 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 561_WT_peak_2460 chr15 45003220 45004451 + 79 NA intron (NM_004048, intron 1 of 3) CpG 150 NM_004048 567 Hs.534255 NM_004048 B2M - beta-2-microglobulin protein-coding 561_WT_peak_2469 chr15 45879581 45879901 + 79 NA intron (NM_012388, intron 1 of 4) CpG 324 NM_012388 26258 Hs.7037 NM_012388 HPRD:16055 BLOC1S6 BLOS6|HPS9|PA|PALLID|PLDN biogenesis of lysosomal organelles complex-1, subunit 6, pallidin protein-coding 561_WT_peak_2245 chr14 61938983 61939229 + 79 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 97806 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 561_WT_peak_7592 chrX 100663223 100663497 + 79 NA promoter-TSS (NM_000169) promoter-TSS (NM_000169) 239 NM_019597 3188 Hs.432485 NM_019597 HPRD:03022 HNRNPH2 FTP3|HNRPH'|HNRPH2|hnRNPH' heterogeneous nuclear ribonucleoprotein H2 (H') protein-coding 561_WT_peak_1531 chr11 130786152 130786454 + 79 NA promoter-TSS (NM_014758) promoter-TSS (NM_014758) 79 NM_014758 399979 Hs.444024 NM_014758 HPRD:18621 SNX19 CHET8 sorting nexin 19 protein-coding 561_WT_peak_5721 chr5 43020199 43020472 + 79 NA promoter-TSS (NR_104650) promoter-TSS (NR_104650) -590 NR_104650 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 561_WT_peak_2133 chr14 23355778 23355993 + 79 NA exon (NM_173527, exon 5 of 5) exon (NM_173527, exon 5 of 5) 3453 NM_173527 161253 Hs.444911 NM_173527 HPRD:08248 REM2 - RAS (RAD and GEM)-like GTP binding 2 protein-coding 561_WT_peak_4274 chr2 114737204 114737473 + 79 NA non-coding (NR_034130, exon 1 of 1) non-coding (NR_034130, exon 1 of 1) 192 NR_034128 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 561_WT_peak_6848 chr7 132766951 132767126 + 79 NA promoter-TSS (NM_017812) promoter-TSS (NM_017812) -210 NM_017812 54927 Hs.655010 NM_017812 HPRD:13044 CHCHD3 MINOS3|PPP1R22 coiled-coil-helix-coiled-coil-helix domain containing 3 protein-coding 561_WT_peak_5347 chr3 186490677 186490884 + 79 NA Intergenic CpG -10581 NM_001967 1974 Hs.518475 NM_001967 HPRD:03062 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 561_WT_peak_6315 chr6 39082411 39082939 + 79 NA exon (NM_018322, exon 1 of 2) exon (NM_018322, exon 1 of 2) 190 NM_018322 55776 Hs.58382 NM_018322 HPRD:12892 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 561_WT_peak_790 chr1 231558293 231558605 + 79 NA 5' UTR (NM_022051, exon 1 of 5) 5' UTR (NM_022051, exon 1 of 5) 2341 NM_022051 54583 Hs.444450 NM_022051 HPRD:06971 EGLN1 C1orf12|ECYT3|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia-inducible factor 1 protein-coding 561_WT_peak_6749 chr7 92076864 92077080 + 79 NA non-coding (NR_052016, exon 1 of 6) non-coding (NR_052016, exon 1 of 6) 210 NR_052016 57798 Hs.21145 NM_021167 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 561_WT_peak_7489 chr9 141020778 141020963 + 79 NA Intergenic TAR1|Satellite|telo -23695 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin, beta pseudogene 5 pseudo 561_WT_peak_2319 chr14 90187233 90187412 + 79 NA Intergenic Intergenic -101828 NM_001085471 1112 Hs.434286 NM_005197 HPRD:07533 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 561_WT_peak_4689 chr20 52210545 52210746 + 79 NA Intergenic CpG -11009 NM_006526 7764 Hs.155040 NM_006526 HPRD:04272 ZNF217 ZABC1 zinc finger protein 217 protein-coding 561_WT_peak_2511 chr15 64455484 64455740 + 79 NA promoter-TSS (NM_000942) promoter-TSS (NM_000942) -258 NM_000942 5479 Hs.434937 NM_000942 HPRD:00458 PPIB CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B (cyclophilin B) protein-coding 561_WT_peak_1699 chr12 51477349 51477553 + 79 NA promoter-TSS (NM_030809) promoter-TSS (NM_030809) 3 NM_030809 81566 Hs.524425 NM_030809 HPRD:12608 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine-serine-rich nuclear protein 2 protein-coding 561_WT_peak_6873 chr7 140714256 140714816 + 79 NA promoter-TSS (NM_016071) promoter-TSS (NM_016071) -57 NM_016071 51650 Hs.416207 NM_016071 HPRD:17598 MRPS33 MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 561_WT_peak_2915 chr16 78812027 78812331 + 79 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 678869 NR_120435 51741 Hs.461453 NM_016373 HPRD:05501 WWOX D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 561_WT_peak_6011 chr5 169064801 169065095 + 79 NA intron (NM_004946, intron 1 of 51) intron (NM_004946, intron 1 of 51) 697 NM_004946 1794 Hs.586174 NM_004946 HPRD:09121 DOCK2 - dedicator of cytokinesis 2 protein-coding 561_WT_peak_1758 chr12 68768007 68768298 + 79 NA Intergenic Intergenic -41991 NM_020128 56890 Hs.655702 NM_017440 HPRD:14376 MDM1 - Mdm1 nuclear protein homolog (mouse) protein-coding 561_WT_peak_7608 chrX 123094577 123095403 + 79 NA promoter-TSS (NM_006603) promoter-TSS (NM_006603) -172 NM_001282418 10735 Hs.496710 NM_006603 HPRD:05077 STAG2 SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 561_WT_peak_5870 chr5 108745267 108745763 + 79 NA intron (NM_014819, intron 1 of 9) CpG 160 NM_014819 9867 Hs.483036 NM_014819 HPRD:11436 PJA2 Neurodap1|RNF131 praja ring finger 2, E3 ubiquitin protein ligase protein-coding 561_WT_peak_2704 chr16 14726495 14726652 + 79 NA promoter-TSS (NM_016561) promoter-TSS (NM_016561) -95 NM_016561 51283 Hs.435556 NM_016561 HPRD:16548 BFAR BAR|RNF47 bifunctional apoptosis regulator protein-coding 561_WT_peak_7532 chrX 47092240 47092338 + 79 NA promoter-TSS (NM_004651) promoter-TSS (NM_004651) -25 NM_004651 8237 Hs.171501 NM_004651 HPRD:02081 USP11 UHX1 ubiquitin specific peptidase 11 protein-coding 561_WT_peak_2123 chr14 21944985 21945243 + 79 NA promoter-TSS (NM_014828) promoter-TSS (NM_014828) 18 NM_032846 84932 Hs.22399 NM_032846 HPRD:06312 RAB2B - RAB2B, member RAS oncogene family protein-coding 561_WT_peak_6690 chr7 66205139 66205544 + 79 NA promoter-TSS (NM_014504) promoter-TSS (NM_014504) -302 NM_014504 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor (GEF) 1 protein-coding 561_WT_peak_4899 chr22 37252509 37252707 + 79 NA Intergenic CpG -4422 NM_013416 4689 Hs.474781 NM_000631 HPRD:03289 NCF4 NCF|P40PHOX|SH3PXD4 neutrophil cytosolic factor 4, 40kDa protein-coding 561_WT_peak_1707 chr12 53715255 53715425 + 79 NA promoter-TSS (NM_001173466) promoter-TSS (NM_001173466) 72 NM_001173466 8086 Hs.369144 NM_015665 HPRD:05646 AAAS AAA|AAASb|ADRACALA|ADRACALIN|ALADIN achalasia, adrenocortical insufficiency, alacrimia protein-coding 561_WT_peak_7632 chrX 153991106 153991687 + 79 NA intron (NR_110022, intron 1 of 13) CpG 379 NM_001363 1736 Hs.4747 NM_001363 HPRD:02129 DKC1 CBF5|DKC|DKCX|NAP57|NOLA4|XAP101 dyskeratosis congenita 1, dyskerin protein-coding 561_WT_peak_212 chr1 45265541 45266026 + 79 NA promoter-TSS (NM_004073) promoter-TSS (NM_004073) -253 NM_004073 1263 Hs.632415 NM_004073 HPRD:04222 PLK3 CNK|FNK|PRK polo-like kinase 3 protein-coding 561_WT_peak_1147 chr10 112678470 112678903 + 78 NA promoter-TSS (NM_007373) promoter-TSS (NM_007373) 8 NM_001195306 92482 Hs.232543 NM_001195304 ENSG00000214413 BBIP1 BBIP10|BBS18|NCRNA00081|bA348N5.3 BBSome interacting protein 1 protein-coding 561_WT_peak_98 chr1 22379010 22379462 + 78 NA intron (NM_044472, intron 1 of 5) CpG 116 NM_044472 998 Hs.467637 NM_001791 HPRD:00309 CDC42 CDC42Hs|G25K cell division cycle 42 protein-coding 561_WT_peak_6516 chr6 151711031 151711248 + 78 NA intron (NM_020861, intron 1 of 2) CpG 1538 NM_020861 57621 Hs.520073 NM_020861 HPRD:10314 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 561_WT_peak_2077 chr13 77903974 77904159 + 78 NA Intergenic Intergenic -2889 NM_015057 23077 Hs.591221 NM_015057 HPRD:10104 MYCBP2 PAM MYC binding protein 2, E3 ubiquitin protein ligase protein-coding 561_WT_peak_2543 chr15 72523572 72523946 + 78 NA promoter-TSS (NM_182471) promoter-TSS (NM_182471) -32 NM_182471 5315 Hs.534770 NM_002654 HPRD:01529 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 561_WT_peak_5357 chr3 187520714 187521067 + 78 NA Intergenic Intergenic -57377 NM_001706 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 561_WT_peak_2620 chr15 93428114 93428294 + 78 NA intron (NR_037601, intron 2 of 5) intron (NR_037601, intron 2 of 5) 1678 NR_037602 100507217 Hs.622504 NR_037600 ENSG00000272888 LOC100507217 - uncharacterized LOC100507217 ncRNA 561_WT_peak_6851 chr7 134832213 134832394 + 78 NA promoter-TSS (NM_018295) promoter-TSS (NM_018295) -463 NM_018295 55281 Hs.521213 NM_018295 HPRD:07723 TMEM140 - transmembrane protein 140 protein-coding 561_WT_peak_6833 chr7 127291592 127291817 + 78 NA promoter-TSS (NM_014390) promoter-TSS (NM_014390) -498 NM_014390 27044 Hs.122523 NM_014390 HPRD:03714 SND1 TDRD11|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 561_WT_peak_465 chr1 147806516 147806822 + 78 NA promoter-TSS (NR_049810) promoter-TSS (NR_049810) 9 NR_049810 100847044 NR_049810 MIR5087 - microRNA 5087 ncRNA 561_WT_peak_7176 chr8 144363546 144363999 + 78 NA promoter-TSS (NR_120682) promoter-TSS (NR_120682) 98 NR_120682 100507316 Hs.446671 NR_120682 LOC100507316 - uncharacterized LOC100507316 ncRNA 561_WT_peak_5177 chr3 101280437 101280877 + 78 NA promoter-TSS (NM_017819) promoter-TSS (NM_017819) -23 NM_017819 54931 Hs.594839 NM_017819 HPRD:15240 TRMT10C HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10 homolog C (S. cerevisiae) protein-coding 561_WT_peak_2016 chr13 42951888 42952153 + 78 NA Intergenic Intergenic 105731 NM_016248 11215 Hs.105105 NM_016248 HPRD:05261 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A kinase (PRKA) anchor protein 11 protein-coding 561_WT_peak_4891 chr22 32145829 32146063 + 78 NA intron (NM_173566, intron 1 of 8) CpG 174 NM_173566 253143 Hs.438906 NM_173566 HPRD:14665 PRR14L C22orf30 proline rich 14-like protein-coding 561_WT_peak_5792 chr5 68855784 68856191 + 78 NA promoter-TSS (NM_001098728) promoter-TSS (NM_001098728) -64 NM_001098728 728340 Hs.191356 NM_001098728 ENSG00000183474 GTF2H2C - GTF2H2 family member C protein-coding 561_WT_peak_3004 chr17 6330885 6331157 + 78 NA intron (NM_001033054, intron 2 of 4) intron (NM_001033054, intron 2 of 4) 7431 NM_001285402 23746 Hs.279887 NM_014336 HPRD:05092 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein-like 1 protein-coding 561_WT_peak_3579 chr19 3500532 3500742 + 78 NA promoter-TSS (NM_031304) promoter-TSS (NM_031304) -16 NM_031304 83475 Hs.515064 NM_031304 HPRD:14627 DOHH HLRC1|hDOHH deoxyhypusine hydroxylase/monooxygenase protein-coding 561_WT_peak_4963 chr22 46449520 46449697 + 78 NA promoter-TSS (NR_027034) promoter-TSS (NR_027034) -118 NR_027034 150381 Hs.659113 NR_027034 PRR34-AS1 - PRR34 antisense RNA 1 ncRNA 561_WT_peak_7205 chr9 6015415 6015674 + 78 NA promoter-TSS (NM_012416) promoter-TSS (NM_012416) 96 NM_001243202 26953 Hs.167496 NM_012416 HPRD:17953 RANBP6 - RAN binding protein 6 protein-coding 561_WT_peak_3594 chr19 6425623 6425793 + 78 NA promoter-TSS (NM_003685) promoter-TSS (NM_003685) -886 NM_003685 8570 Hs.727344 NM_003685 HPRD:10350 KHSRP FBP2|FUBP2|KSRP KH-type splicing regulatory protein protein-coding 561_WT_peak_6189 chr6 27099529 27099671 + 78 NA TTS (NM_021058) TTS (NM_021058) 975 NM_021058 8970 Hs.591807 NM_021058 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1, H2bj protein-coding 561_WT_peak_190 chr1 39657848 39658114 + 78 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 108142 NM_012090 23499 Hs.472475 NM_012090 HPRD:09750 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 561_WT_peak_6280 chr6 31633399 31633933 + 78 NA promoter-TSS (NM_001320) promoter-TSS (NM_001320) 9 NM_001320 1460 Hs.73527 NM_001320 HPRD:00278 CSNK2B CK2B|CK2N|CSK2B|G5A casein kinase 2, beta polypeptide protein-coding 561_WT_peak_4006 chr2 28582028 28582392 + 78 NA Intergenic Intergenic -33569 NM_005253 2355 Hs.220971 NM_005253 FOSL2 FRA2 FOS-like antigen 2 protein-coding 561_WT_peak_5430 chr4 25915847 25916180 + 78 NA exon (NM_001145432, exon 1 of 3) exon (NM_001145432, exon 1 of 3) 199 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52 small integral membrane protein 20 protein-coding 561_WT_peak_6510 chr6 149554478 149554722 + 78 NA intron (NM_001292035, intron 1 of 5) L2c|LINE|L2 14841 NM_001292035 23118 Hs.269775 NM_015093 HPRD:05483 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding 561_WT_peak_1520 chr11 125384449 125384746 + 78 NA Intergenic L1MB7|LINE|L1 -18391 NM_022549 9638 Hs.224008 NM_005103 HPRD:09212 FEZ1 - fasciculation and elongation protein zeta 1 (zygin I) protein-coding 561_WT_peak_4994 chr3 5229476 5229656 + 78 NA exon (NM_014674, exon 1 of 12) exon (NM_014674, exon 1 of 12) 207 NM_014674 9695 Hs.224616 NM_014674 HPRD:09644 EDEM1 EDEM ER degradation enhancer, mannosidase alpha-like 1 protein-coding 561_WT_peak_2764 chr16 29624609 29624956 + 78 NA non-coding (NR_002593, exon 1 of 1) non-coding (NR_002593, exon 1 of 1) 256 NR_002593 81893 Hs.677169 NM_031211 HPRD:13964 SLC7A5P1 DC49|LAT1-3TM|MLAS|hLAT1-3TM solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 pseudo 561_WT_peak_1672 chr12 47785330 47785558 + 78 NA Intergenic Intergenic -175218 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 561_WT_peak_6078 chr6 2940691 2940904 + 78 NA Intergenic LTR12E|LTR|ERV1 21607 NM_001271825 5269 Hs.519523 NM_004568 HPRD:01413 SERPINB6 CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3 serpin peptidase inhibitor, clade B (ovalbumin), member 6 protein-coding 561_WT_peak_1495 chr11 117872960 117873457 + 78 NA Intergenic Intergenic 16102 NM_001558 3587 Hs.504035 NM_001558 HPRD:00911 IL10RA CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R interleukin 10 receptor, alpha protein-coding 561_WT_peak_6186 chr6 26924475 26924747 + 78 NA promoter-TSS (NR_003504) promoter-TSS (NR_003504) -161 NR_026775 100133205 Hs.526951 NR_026775 ENSG00000224843 LINC00240 C6orf41|NCRNA00240|bA373D17.1 long intergenic non-protein coding RNA 240 ncRNA 561_WT_peak_7272 chr9 66458124 66458484 + 78 NA intron (NR_121647, intron 1 of 4) CpG 1015 NR_121647 103352539 Hs.351215 NR_121647 LINC01410 - long intergenic non-protein coding RNA 1410 ncRNA 561_WT_peak_5690 chr5 35856793 35857293 + 78 NA promoter-TSS (NM_002185) promoter-TSS (NM_002185) 66 NR_120485 3575 Hs.591742 NM_002185 HPRD:00893 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 561_WT_peak_1167 chr10 129091977 129092246 + 78 NA intron (NM_001380, intron 29 of 51) intron (NM_001380, intron 29 of 51) -97689 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 FAM196A C10orf141 family with sequence similarity 196, member A protein-coding 561_WT_peak_3090 chr17 26926364 26926625 + 78 NA promoter-TSS (NM_006461) promoter-TSS (NM_006461) 343 NR_040012 100506436 Hs.743630 NR_040012 SPAG5-AS1 - SPAG5 antisense RNA 1 ncRNA 561_WT_peak_7326 chr9 88897015 88897418 + 78 NA intron (NM_030940, intron 1 of 3) CpG 274 NM_030940 81689 Hs.449291 NM_030940 HPRD:17091 ISCA1 HBLD2|ISA1|hIscA iron-sulfur cluster assembly 1 protein-coding 561_WT_peak_7349 chr9 95056241 95056414 + 78 NA promoter-TSS (NM_013417) promoter-TSS (NM_013417) -289 NM_013417 3376 Hs.445403 NM_002161 HPRD:02832 IARS IARS1|ILERS|ILRS|IRS|PRO0785 isoleucyl-tRNA synthetase protein-coding 561_WT_peak_5634 chr4 164415584 164416207 + 78 NA 5' UTR (NM_018352, exon 1 of 7) 5' UTR (NM_018352, exon 1 of 7) 222 NM_018352 55319 Hs.267446 NM_018352 HPRD:07739 TMA16 C4orf43 translation machinery associated 16 homolog (S. cerevisiae) protein-coding 561_WT_peak_6539 chr6 159240557 159240836 + 78 NA promoter-TSS (NM_001111077) promoter-TSS (NM_001111077) -240 NM_001111077 7430 Hs.487027 NM_003379 HPRD:00475 EZR CVIL|CVL|HEL-S-105|VIL2 ezrin protein-coding 561_WT_peak_3814 chr19 46421069 46421276 + 78 NA Intergenic MER20B|DNA|hAT-Charlie -3136 NM_001029861 339345 Hs.434218 NM_001029861 HPRD:18784 NANOS2 NOS2 nanos homolog 2 (Drosophila) protein-coding 561_WT_peak_5201 chr3 111262719 111262840 + 78 NA intron (NM_198196, intron 1 of 14) intron (NM_198196, intron 1 of 14) 1853 NM_198196 10225 Hs.142023 NM_005816 HPRD:06916 CD96 TACTILE CD96 molecule protein-coding 561_WT_peak_4086 chr2 61404678 61404874 + 78 NA 5' UTR (NM_152392, exon 1 of 6) 5' UTR (NM_152392, exon 1 of 6) 221 NM_152392 130872 Hs.655602 NM_152392 HPRD:16479 AHSA2 Hch1 AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast) protein-coding 561_WT_peak_4619 chr20 35224184 35224418 + 78 NA intron (NM_001199535, intron 2 of 4) intron (NM_001199535, intron 2 of 4) -9836 NM_001199534 55969 Hs.584985 NM_018840 HPRD:12761 C20orf24 RIP5 chromosome 20 open reading frame 24 protein-coding 561_WT_peak_7092 chr8 101965424 101965620 + 78 NA promoter-TSS (NM_001135699) promoter-TSS (NM_001135699) 101 NM_003406 7534 Hs.492407 NM_003406 HPRD:03183 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 561_WT_peak_3823 chr19 47987567 47987787 + 78 NA promoter-TSS (NM_007059) promoter-TSS (NM_007059) 138 NR_038452 100505681 Hs.657320 NR_038452 ENSG00000268061 NAPA-AS1 - NAPA antisense RNA 1 ncRNA 561_WT_peak_6937 chr8 20123215 20123388 + 78 NA Intergenic Intergenic -9983 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 561_WT_peak_2928 chr16 82957777 82957918 + 78 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 66056 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 561_WT_peak_3049 chr17 15902725 15903066 + 78 NA exon (NM_001042698, exon 1 of 6) exon (NM_001042698, exon 1 of 6) 111 NM_001042698 125150 Hs.593985 NM_001042697 ENSG00000214941 ZSWIM7 SWS1 zinc finger, SWIM-type containing 7 protein-coding 561_WT_peak_129 chr1 27070668 27070855 + 78 NA intron (NM_006015, intron 4 of 19) intron (NM_006015, intron 4 of 19) -43693 NM_017837 55650 Hs.259605 NM_017837 HPRD:07912 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis, class V protein-coding 561_WT_peak_4371 chr2 174904662 174904815 + 78 NA Intergenic Intergenic -74308 NM_003111 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 561_WT_peak_6864 chr7 138818384 138818643 + 78 NA promoter-TSS (NM_001144923) promoter-TSS (NM_001144923) 23 NM_001144923 79989 Hs.133020 NM_024926 HPRD:07776 TTC26 DYF13|dyf-13 tetratricopeptide repeat domain 26 protein-coding 561_WT_peak_3432 chr18 9914286 9914475 + 78 NA intron (NM_194434, intron 1 of 5) CpG 425 NM_003574 9218 Hs.165195 NM_003574 HPRD:09299 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa protein-coding 561_WT_peak_5226 chr3 120460951 120461305 + 78 NA promoter-TSS (NM_005513) promoter-TSS (NM_005513) 256 NM_173825 285282 Hs.444360 NM_173825 HPRD:15203 RABL3 - RAB, member of RAS oncogene family-like 3 protein-coding 561_WT_peak_935 chr10 30971498 30971769 + 78 NA Intergenic Intergenic -9570 NR_036438 645954 Hs.408581 NR_036438 ENSG00000234814 SVILP1 - supervillin pseudogene 1 pseudo 561_WT_peak_7419 chr9 127177461 127177884 + 78 NA promoter-TSS (NM_002799) promoter-TSS (NM_002799) 80 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 561_WT_peak_3761 chr19 39926418 39926607 + 78 NA exon (NM_001020, exon 1 of 5) exon (NM_001020, exon 1 of 5) 106 NM_001020 6217 Hs.397609 NM_001020 HPRD:04724 RPS16 S16 ribosomal protein S16 protein-coding 561_WT_peak_2599 chr15 90436961 90437138 + 78 NA intron (NM_001199058, intron 5 of 9) CpG 568 NR_023361 10239 Hs.632161 NM_005829 HPRD:03880 AP3S2 AP3S3|sigma3b adaptor-related protein complex 3, sigma 2 subunit protein-coding 561_WT_peak_2129 chr14 23057871 23058247 + 78 NA promoter-TSS (NM_001344) promoter-TSS (NM_001344) 84 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 561_WT_peak_4555 chr20 4795388 4795677 + 78 NA intron (NM_014737, intron 2 of 11) intron (NM_014737, intron 2 of 11) 237 NM_170774 9770 Hs.631504 NM_014737 HPRD:15218 RASSF2 CENP-34|RASFADIN Ras association (RalGDS/AF-6) domain family member 2 protein-coding 561_WT_peak_3855 chr19 49990715 49991194 + 78 NA promoter-TSS (NR_026712) promoter-TSS (NR_026712) 89 NR_026712 728658 Hs.645344 NR_026712 ENSG00000236552 RPL13AP5 RPL13A_8_1086|bA196N24.2 ribosomal protein L13a pseudogene 5 pseudo 561_WT_peak_1747 chr12 62654100 62654742 + 77 NA TTS (NR_106740) TTS (NR_106740) 281 NR_106740 102465133 NR_106740 MIR6125 hsa-mir-6125 microRNA 6125 ncRNA 561_WT_peak_3468 chr18 21599537 21599881 + 77 NA intron (NM_001135993, intron 1 of 13) MER58A|DNA|hAT-Charlie -4285 NR_110796 102724246 Hs.569872 NR_110796 LOC102724246 - uncharacterized LOC102724246 ncRNA 561_WT_peak_6862 chr7 138779965 138780327 + 77 NA intron (NM_024625, intron 1 of 8) intron (NM_024625, intron 1 of 8) 14319 NM_020119 56829 Hs.133512 NM_020119 HPRD:09534 ZC3HAV1 ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2 zinc finger CCCH-type, antiviral 1 protein-coding 561_WT_peak_3041 chr17 8150950 8151419 + 77 NA intron (NR_046431, intron 1 of 21) CpG 229 NR_046431 80169 Hs.156055 NM_025099 CTC1 AAF-132|AAF132|C17orf68|CRMCC|tmp494178 CTS telomere maintenance complex component 1 protein-coding 561_WT_peak_4342 chr2 158325792 158326036 + 77 NA Intergenic Intergenic -25310 NM_004288 9595 Hs.270 NM_004288 HPRD:09192 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 561_WT_peak_4546 chr20 2820815 2821244 + 77 NA promoter-TSS (NM_080413) promoter-TSS (NM_080413) -314 NM_080413 64601 Hs.269577 NM_022575 HPRD:12259 VPS16 hVPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) protein-coding 561_WT_peak_3824 chr19 48103848 48104084 + 77 NA Intergenic CpG -7487 NM_015711 29998 Hs.97244 NM_015711 HPRD:09296 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 561_WT_peak_5135 chr3 57678387 57678561 + 77 NA intron (NM_152678, intron 1 of 19) CpG 342 NM_152678 201627 Hs.91085 NM_152678 HPRD:08756 DENND6A AFI1A|FAM116A DENN/MADD domain containing 6A protein-coding 561_WT_peak_2494 chr15 56538277 56538503 + 77 NA Intergenic Intergenic -2907 NM_022841 64864 Hs.745089 NM_022841 HPRD:07807 RFX7 RFXDC2 regulatory factor X, 7 protein-coding 561_WT_peak_5151 chr3 71136723 71136986 + 77 NA intron (NM_001244810, intron 7 of 20) intron (NM_001244810, intron 7 of 20) -22780 NM_001244813 27086 Hs.59368 NM_032682 HPRD:18518 FOXP1 12CC4|QRF1|hFKH1B forkhead box P1 protein-coding 561_WT_peak_2703 chr16 14723863 14724136 + 77 NA 5' UTR (NM_002582, exon 1 of 24) 5' UTR (NM_002582, exon 1 of 24) 129 NM_002582 5073 Hs.253197 NM_002582 HPRD:07250 PARN DAN poly(A)-specific ribonuclease protein-coding 561_WT_peak_4614 chr20 34252477 34252825 + 77 NA intron (NM_001198838, intron 1 of 2) CpG 208 NR_037188 8904 Hs.246413 NM_003915 HPRD:05014 CPNE1 COPN1|CPN1 copine I protein-coding 561_WT_peak_4675 chr20 48429425 48429785 + 77 NA intron (NR_048538, intron 1 of 13) CpG 355 NM_001260491 23315 Hs.444202 NM_015266 HPRD:18062 SLC9A8 NHE-8|NHE8 solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 protein-coding 561_WT_peak_7301 chr9 75058247 75058489 + 77 NA Intergenic AluSz|SINE|Alu -78205 NM_006007 7763 Hs.406096 NM_006007 HPRD:05302 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger, AN1-type domain 5 protein-coding 561_WT_peak_7461 chr9 132890610 132890813 + 77 NA intron (NM_020960, intron 16 of 17) intron (NM_020960, intron 16 of 17) -44146 NM_014286 23413 Hs.642946 NM_014286 HPRD:04500 NCS1 FLUP|FREQ neuronal calcium sensor 1 protein-coding 561_WT_peak_364 chr1 110344600 110344802 + 77 NA Intergenic Intergenic -38057 NM_024526 79574 Hs.485352 NM_024526 HPRD:13277 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 561_WT_peak_3610 chr19 8942834 8943196 + 77 NA Intergenic CpG -9450 NM_144693 148156 Hs.659797 NM_144693 HPRD:15841 ZNF558 - zinc finger protein 558 protein-coding 561_WT_peak_3934 chr19 58873618 58874050 + 77 NA intron (NM_198458, intron 1 of 2) CpG 380 NM_001207009 162968 Hs.447840 NM_198458 HPRD:15806 ZNF497 - zinc finger protein 497 protein-coding 561_WT_peak_4920 chr22 39795674 39795964 + 77 NA promoter-TSS (NM_006116) promoter-TSS (NM_006116) 60 NM_006116 10454 Hs.507681 NM_006116 HPRD:04012 TAB1 3'-Tab1|MAP3K7IP1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 protein-coding 561_WT_peak_3897 chr19 55770529 55770809 + 77 NA promoter-TSS (NM_014931) promoter-TSS (NM_014931) -631 NM_014931 22870 Hs.515610 NM_014931 HPRD:17207 PPP6R1 KIAA1115|PP6R1|SAP190|SAPS1 protein phosphatase 6, regulatory subunit 1 protein-coding 561_WT_peak_1998 chr13 39612167 39612412 + 77 NA promoter-TSS (NM_025138) promoter-TSS (NM_025138) -76 NM_025138 80209 Hs.318526 NM_025138 HPRD:12616 PROSER1 C13orf23 proline and serine rich 1 protein-coding 561_WT_peak_1604 chr12 12594984 12595154 + 77 NA intron (NM_001300742, intron 3 of 3) intron (NM_001300742, intron 3 of 3) 85056 NM_058169 118426 Hs.720779 NM_058169 HPRD:17439 LOH12CR1 LOH1CR12 loss of heterozygosity, 12, chromosomal region 1 protein-coding 561_WT_peak_5856 chr5 95873244 95873491 + 77 NA Intergenic Intergenic -104382 NM_000439 5122 Hs.78977 NM_000439 HPRD:01201 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 561_WT_peak_3128 chr17 33814585 33814932 + 77 NA promoter-TSS (NM_001195790) promoter-TSS (NM_001195790) 0 NM_001195790 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12-like protein-coding 561_WT_peak_4481 chr2 223725774 223725997 + 77 NA 5' UTR (NM_203372, exon 1 of 16) 5' UTR (NM_203372, exon 1 of 16) 153 NM_203372 2181 Hs.655772 NM_004457 ACSL3 ACS3|FACL3|PRO2194 acyl-CoA synthetase long-chain family member 3 protein-coding 561_WT_peak_3540 chr18 77794534 77794794 + 77 NA intron (NM_001171967, intron 1 of 5) CpG 318 NM_024805 79863 Hs.728931 NM_024805 RBFA C18orf22|HsT169 ribosome binding factor A (putative) protein-coding 561_WT_peak_5344 chr3 184080719 184080916 + 77 NA promoter-TSS (NM_001278715) intron (NM_001278700, intron 1 of 4) 46 NM_001278699 5437 Hs.432574 NM_006232 HPRD:09082 POLR2H RPABC3|RPB17|RPB8 polymerase (RNA) II (DNA directed) polypeptide H protein-coding 561_WT_peak_3863 chr19 50380099 50380296 + 77 NA promoter-TSS (NM_001168222) promoter-TSS (NM_001168222) 447 NM_001098632 84335 Hs.515542 NM_032375 HPRD:12441 AKT1S1 Lobe|PRAS40 AKT1 substrate 1 (proline-rich) protein-coding 561_WT_peak_3866 chr19 50432828 50433174 + 77 NA promoter-TSS (NM_153718) promoter-TSS (NM_153718) -13 NM_016553 23636 Hs.574492 NM_012346 HPRD:05782 NUP62 IBSN|SNDI|p62 nucleoporin 62kDa protein-coding 561_WT_peak_3547 chr19 510727 511030 + 77 NA intron (NM_033513, intron 1 of 1) MER20|DNA|hAT-Charlie 3381 NM_033513 91978 Hs.369613 NM_033513 HPRD:12701 TPGS1 C19orf20|GTRGEO22|PGs1 tubulin polyglutamylase complex subunit 1 protein-coding 561_WT_peak_5565 chr4 103266283 103266608 + 77 NA promoter-TSS (NM_001135147) promoter-TSS (NM_001135147) -35 NM_001135147 64116 Hs.288034 NM_022154 HPRD:12286 SLC39A8 BIGM103|LZT-Hs6|ZIP8 solute carrier family 39 (zinc transporter), member 8 protein-coding 561_WT_peak_3659 chr19 14682748 14683049 + 77 NA promoter-TSS (NM_004146) promoter-TSS (NM_004146) -9 NM_004146 4713 Hs.532853 NM_004146 HPRD:11957 NDUFB7 B18|CI-B18 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa protein-coding 561_WT_peak_4636 chr20 40246929 40247183 + 77 NA promoter-TSS (NM_032221) promoter-TSS (NM_032221) 77 NM_032221 84181 Hs.740645 NM_032221 HPRD:13049 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 561_WT_peak_6390 chr6 89789401 89789803 + 77 NA promoter-TSS (NM_006813) promoter-TSS (NM_006813) -827 NM_006813 10957 Hs.75969 NM_006813 HPRD:08412 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline-rich nuclear receptor coactivator 1 protein-coding 561_WT_peak_2332 chr14 91696097 91696751 + 77 NA Intergenic Intergenic 14428 NM_001177676 8111 Hs.8882 NM_003485 HPRD:03241 GPR68 GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 561_WT_peak_231 chr1 51435424 51435534 + 77 NA promoter-TSS (NM_078626) promoter-TSS (NM_078626) -163 NM_078626 1031 Hs.525324 NM_001262 HPRD:04534 CDKN2C INK4C|p18|p18-INK4C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) protein-coding 561_WT_peak_5966 chr5 141348527 141349012 + 77 NA promoter-TSS (NM_183401) promoter-TSS (NM_183401) 57 NM_183401 9604 Hs.483616 NM_004290 HPRD:05745 RNF14 ARA54|HFB30|TRIAD2 ring finger protein 14 protein-coding 561_WT_peak_1938 chr13 20356525 20357130 + 77 NA non-coding (NR_044998, exon 1 of 8) non-coding (NR_044998, exon 1 of 8) 332 NR_003272 55269 Hs.213198 NM_001042414 PSPC1 PSP1 paraspeckle component 1 protein-coding 561_WT_peak_4240 chr2 102844197 102844490 + 77 NA intron (NM_003854, intron 9 of 11) intron (NM_003854, intron 9 of 11) 40910 NM_003854 8808 Hs.659863 NM_003854 HPRD:05150 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor-like 2 protein-coding 561_WT_peak_2679 chr16 4233448 4233785 + 77 NA Intergenic CpG 58465 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL - sarcalumenin protein-coding 561_WT_peak_2740 chr16 23652687 23653086 + 77 NA promoter-TSS (NM_024675) promoter-TSS (NM_024675) 199 NM_032486 84516 Hs.435941 NM_032486 DCTN5 - dynactin 5 (p25) protein-coding 561_WT_peak_6809 chr7 105987022 105987338 + 77 NA Intergenic Charlie6|DNA|hAT-Charlie -61542 NM_005746 10135 Hs.489615 NM_005746 HPRD:09938 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 561_WT_peak_2752 chr16 28152272 28152620 + 77 NA intron (NM_001270940, intron 10 of 24) intron (NM_001270940, intron 10 of 24) 70793 NM_001270940 23214 Hs.460468 NM_015171 HPRD:10525 XPO6 EXP6|RANBP20 exportin 6 protein-coding 561_WT_peak_4666 chr20 47804808 47805177 + 77 NA promoter-TSS (NM_004602) promoter-TSS (NM_004602) -88 NM_017452 6780 Hs.596704 NM_004602 HPRD:03422 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 561_WT_peak_6256 chr6 30028745 30029154 + 77 NA promoter-TSS (NM_014596) promoter-TSS (NM_014596) 12 NR_026751 80862 Hs.653168 NR_026751 ENSG00000204623 ZNRD1-AS1 C6orf12|HTEX4|NCRNA00171|TCTEX4|ZNRD1-AS|ZNRD1AS ZNRD1 antisense RNA 1 ncRNA 561_WT_peak_1805 chr12 94656548 94656813 + 77 NA intron (NR_037687, intron 1 of 11) MIRb|SINE|MIR 383 NR_037687 10154 Hs.584845 NM_005761 HPRD:05036 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 561_WT_peak_3031 chr17 8028885 8029221 + 77 NA Intergenic Intergenic -1643 NM_001165967 84667 Hs.434828 NM_032580 HPRD:09729 HES7 SCDO4|bHLHb37 hes family bHLH transcription factor 7 protein-coding 561_WT_peak_2900 chr16 71928952 71929852 + 77 NA promoter-TSS (NM_014761) promoter-TSS (NM_014761) 6 NM_001270978 9798 Hs.232194 NM_014761 IST1 OLC1 increased sodium tolerance 1 homolog (yeast) protein-coding 561_WT_peak_5766 chr5 61580778 61581004 + 77 NA Intergenic MLT1K|LTR|ERVL-MaLR -21098 NM_001243953 3796 Hs.558351 NM_004520 KIF2A CDCBM3|HK2|KIF2 kinesin heavy chain member 2A protein-coding 561_WT_peak_3275 chr17 57696561 57696961 + 77 NA promoter-TSS (NM_001288653) promoter-TSS (NM_001288653) -289 NM_004859 1213 Hs.491351 NM_004859 HPRD:00350 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc clathrin, heavy chain (Hc) protein-coding 561_WT_peak_1759 chr12 69201982 69202184 + 77 NA promoter-TSS (NM_001145337) promoter-TSS (NM_001145337) 131 NM_002392 4193 Hs.484551 NM_002392 HPRD:01272 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene, E3 ubiquitin protein ligase protein-coding 561_WT_peak_7392 chr9 114393475 114393665 + 77 NA promoter-TSS (NM_004125) promoter-TSS (NM_004125) -62 NR_037148 548645 Hs.534196 NM_001015882 HPRD:18685 DNAJC25 bA16L21.2.1 DnaJ (Hsp40) homolog, subfamily C , member 25 protein-coding 561_WT_peak_457 chr1 147016894 147017072 + 77 NA intron (NM_004326, intron 1 of 9) intron (NM_004326, intron 1 of 9) 3712 NM_004326 607 Hs.415209 NM_004326 HPRD:04000 BCL9 LGS B-cell CLL/lymphoma 9 protein-coding 561_WT_peak_4370 chr2 174829649 174830016 + 77 NA promoter-TSS (NM_001017371) promoter-TSS (NM_001017371) 598 NM_001172712 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 561_WT_peak_1966 chr13 26796156 26796719 + 77 NA promoter-TSS (NM_005977) promoter-TSS (NM_005977) 71 NM_005977 6049 Hs.136885 NM_005977 HPRD:05027 RNF6 - ring finger protein (C3H2C3 type) 6 protein-coding 561_WT_peak_288 chr1 71546448 71546767 + 77 NA promoter-TSS (NR_046217) promoter-TSS (NR_046217) 365 NM_203350 9406 Hs.194718 NM_005455 HPRD:09185 ZRANB2 ZIS|ZIS1|ZIS2|ZNF265 zinc finger, RAN-binding domain containing 2 protein-coding 561_WT_peak_376 chr1 111505857 111506441 + 77 NA intron (NM_018372, intron 1 of 3) CpG 417 NM_018372 55791 Hs.25245 NM_018372 HPRD:17975 LRIF1 C1orf103|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 561_WT_peak_4647 chr20 44486335 44486512 + 77 NA promoter-TSS (NM_005469) promoter-TSS (NM_005469) 203 NM_080752 140831 Hs.292135 NM_080752 HPRD:15903 ZSWIM3 C20orf164|PPP1R174 zinc finger, SWIM-type containing 3 protein-coding 561_WT_peak_5917 chr5 133512432 133512770 + 77 NA 5' UTR (NM_170679, exon 1 of 6) 5' UTR (NM_170679, exon 1 of 6) 123 NM_170679 6500 Hs.171626 NM_006930 SKP1 EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A S-phase kinase-associated protein 1 protein-coding 561_WT_peak_371 chr1 111190122 111190406 + 76 NA Intergenic MER121|DNA|TcMar? -16168 NM_001204269 3737 Hs.248139 NM_004974 HPRD:01443 KCNA2 HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel, shaker-related subfamily, member 2 protein-coding 561_WT_peak_626 chr1 173793375 173793677 + 76 NA promoter-TSS (NM_018122) promoter-TSS (NM_018122) 251 NM_001127181 91687 Hs.531856 NM_033319 HPRD:15909 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 561_WT_peak_3581 chr19 3721487 3721672 + 76 NA promoter-TSS (NM_001267561) promoter-TSS (NM_001267561) -118 NM_001267561 27134 Hs.25527 NM_014428 HPRD:18194 TJP3 ZO-3|ZO3 tight junction protein 3 protein-coding 561_WT_peak_2581 chr15 83679808 83680024 + 76 NA intron (NM_001160116, intron 1 of 3) L2c|LINE|L2 477 NM_001160116 123207 Hs.352541 NM_144597 HPRD:14538 C15orf40 - chromosome 15 open reading frame 40 protein-coding 561_WT_peak_4409 chr2 192543028 192543192 + 76 NA non-coding (NR_045623, exon 1 of 7) non-coding (NR_045623, exon 1 of 7) 248 NR_045623 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 561_WT_peak_4466 chr2 216176852 216177149 + 76 NA intron (NM_004044, intron 1 of 15) CpG 321 NM_004044 471 Hs.90280 NM_004044 HPRD:03434 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 561_WT_peak_6084 chr6 3849508 3849763 + 76 NA promoter-TSS (NM_012135) promoter-TSS (NM_012135) 3 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 561_WT_peak_595 chr1 161719536 161719783 + 76 NA promoter-TSS (NM_007240) promoter-TSS (NM_007240) 78 NM_007240 11266 Hs.416216 NM_007240 HPRD:05323 DUSP12 DUSP1|YVH1 dual specificity phosphatase 12 protein-coding 561_WT_peak_6417 chr6 106565486 106565767 + 76 NA Intergenic Intergenic 18889 NM_182907 639 Hs.436023 NM_001198 HPRD:04572 PRDM1 BLIMP1|PRDI-BF1 PR domain containing 1, with ZNF domain protein-coding 561_WT_peak_4226 chr2 98262532 98262725 + 76 NA exon (NM_001862, exon 1 of 4) exon (NM_001862, exon 1 of 4) 107 NM_001862 1329 Hs.1342 NM_001862 COX5B COXVB cytochrome c oxidase subunit Vb protein-coding 561_WT_peak_6275 chr6 31515352 31515555 + 76 NA promoter-TSS (NM_138282).2 promoter-TSS (NM_138282).2 100 NM_001144961 4795 Hs.2764 NM_005007 HPRD:07043 NFKBIL1 IKBL|LST1|NFKBIL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 protein-coding 561_WT_peak_3693 chr19 19774120 19774337 + 76 NA exon (NM_020410, exon 1 of 26) exon (NM_020410, exon 1 of 26) 275 NM_020410 57130 Hs.501794 NM_020410 HPRD:12501 ATP13A1 ATP13A ATPase type 13A1 protein-coding 561_WT_peak_5198 chr3 108557375 108557612 + 76 NA intron (NM_016388, intron 2 of 5) intron (NM_016388, intron 2 of 5) 15862 NM_016388 50852 Hs.138701 NM_016388 HPRD:05392 TRAT1 TCRIM|TRIM T cell receptor associated transmembrane adaptor 1 protein-coding 561_WT_peak_474 chr1 148598213 148598493 + 76 NA intron (NR_104217, intron 2 of 17) tRNA-Asn-AAC|tRNA|tRNA 37506 NM_173638 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 561_WT_peak_5710 chr5 40835060 40835685 + 76 NA promoter-TSS (NM_000997) promoter-TSS (NM_000997) 15 NM_000997 6167 Hs.447582 NM_000997 RPL37 L37 ribosomal protein L37 protein-coding 561_WT_peak_1554 chr12 4262623 4262935 + 76 NA Intergenic Intergenic -120123 NM_001759 894 Hs.376071 NM_001759 HPRD:00451 CCND2 KIAK0002 cyclin D2 protein-coding 561_WT_peak_5493 chr4 57302413 57302660 + 76 NA promoter-TSS (NM_002703) promoter-TSS (NM_002703) 267 NM_001079524 10606 Hs.518774 NM_006452 HPRD:01401 PAICS ADE2|ADE2H1|AIRC|PAIS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase protein-coding 561_WT_peak_4761 chr21 30445614 30445945 + 76 NA 5' UTR (NM_001282907, exon 1 of 16) 5' UTR (NM_001282907, exon 1 of 16) 339 NM_001282909 10694 Hs.125113 NM_006585 HPRD:10816 CCT8 C21orf112|Cctq|D21S246|PRED71 chaperonin containing TCP1, subunit 8 (theta) protein-coding 561_WT_peak_6628 chr7 26333660 26333930 + 76 NA intron (NM_001199835, intron 1 of 6) intron (NM_001199835, intron 1 of 6) 2280 NM_013322 29887 Hs.741316 NM_013322 HPRD:15409 SNX10 OPTB8 sorting nexin 10 protein-coding 561_WT_peak_5403 chr4 6182639 6182878 + 76 NA intron (NM_001099433, intron 1 of 20) intron (NM_001099433, intron 1 of 20) 19560 NM_001099433 152789 Hs.479066 NM_144720 HPRD:11292 JAKMIP1 Gababrbp|JAMIP1|MARLIN1 janus kinase and microtubule interacting protein 1 protein-coding 561_WT_peak_5491 chr4 57253491 57253771 + 76 NA promoter-TSS (NM_001286669) promoter-TSS (NM_001286669) 43 NM_001286669 132949 Hs.104347 NM_181806 HPRD:12398 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 561_WT_peak_331 chr1 94883603 94883791 + 76 NA promoter-TSS (NM_002858) promoter-TSS (NM_002858) -236 NM_002858 5825 Hs.700576 NM_002858 HPRD:01368 ABCD3 ABC43|PMP70|PXMP1|ZWS2 ATP-binding cassette, sub-family D (ALD), member 3 protein-coding 561_WT_peak_545 chr1 155164185 155164397 + 76 NA promoter-TSS (NR_030281) promoter-TSS (NR_030281) -677 NR_030281 693235 NR_030281 miRBase:MI0003560 MIR92B MIRN92B|hsa-mir-92b microRNA 92b ncRNA 561_WT_peak_1690 chr12 49682228 49682423 + 76 NA Intergenic Intergenic -6584 NM_006262 5630 Hs.37044 NM_006262 PRPH NEF4|PRPH1 peripherin protein-coding 561_WT_peak_4117 chr2 68478276 68478429 + 76 NA intron (NM_000945, intron 1 of 5) intron (NM_000945, intron 1 of 5) 1299 NM_000945 5534 Hs.280604 NM_000945 HPRD:03195 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3, regulatory subunit B, alpha protein-coding 561_WT_peak_636 chr1 179335175 179335367 + 76 NA intron (NR_073544, intron 1 of 25) CpG 164 NR_073544 126859 Hs.658505 NM_144696 HPRD:08740 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 561_WT_peak_5699 chr5 40224118 40224397 + 76 NA Intergenic Intergenic 171864 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 561_WT_peak_1008 chr10 64397369 64397655 + 76 NA intron (NM_199451, intron 5 of 7) intron (NM_199451, intron 5 of 7) 117305 NM_199452 22891 Hs.22653 NM_014951 HPRD:06380 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 561_WT_peak_3225 chr17 46507722 46507885 + 76 NA promoter-TSS (NM_001075099) promoter-TSS (NM_001075099) -209 NM_003726 8631 Hs.316931 NM_003726 HPRD:05396 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 561_WT_peak_907 chr10 21991800 21991941 + 76 NA intron (NM_004641, intron 14 of 23) L1MA4A|LINE|L1 168296 NM_001195626 8028 Hs.30385 NM_004641 HPRD:03874 MLLT10 AF10 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 protein-coding 561_WT_peak_4477 chr2 220118793 220119083 + 76 NA promoter-TSS (NM_006000) promoter-TSS (NM_006000) -270 NM_006000 7277 Hs.75318 NM_006000 HPRD:01851 TUBA4A H2-ALPHA|TUBA1 tubulin, alpha 4a protein-coding 561_WT_peak_6798 chr7 104584539 104584971 + 76 NA Intergenic Intergenic -17663 NR_027374 723809 Hs.124316 NR_027374 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 561_WT_peak_1691 chr12 49760663 49760922 + 76 NA non-coding (NR_120663, exon 1 of 15) non-coding (NR_120663, exon 1 of 15) 104 NM_001293285 65244 Hs.654826 NM_023071 HPRD:15434 SPATS2 P59SCR|SCR59|SPATA10 spermatogenesis associated, serine-rich 2 protein-coding 561_WT_peak_5202 chr3 111335310 111335598 + 76 NA intron (NM_198196, intron 9 of 14) MIRb|SINE|MIR -21272 NM_024508 79413 Hs.136912 NM_024508 HPRD:15686 ZBED2 - zinc finger, BED-type containing 2 protein-coding 561_WT_peak_5520 chr4 83350779 83350995 + 76 NA promoter-TSS (NM_001292017) promoter-TSS (NM_001292017) 491 NM_031372 9987 Hs.527105 NM_005463 HPRD:06185 HNRNPDL HNRNP|HNRPDL|JKTBP|JKTBP2|laAUF1 heterogeneous nuclear ribonucleoprotein D-like protein-coding 561_WT_peak_6342 chr6 45345460 45345654 + 76 NA 5' UTR (NM_181356, exon 1 of 13) 5' UTR (NM_181356, exon 1 of 13) 231 NM_181356 8464 Hs.368325 NM_003599 HPRD:04254 SUPT3H SPT3|SPT3L suppressor of Ty 3 homolog (S. cerevisiae) protein-coding 561_WT_peak_1438 chr11 85339614 85339913 + 76 NA intron (NM_001256547, intron 1 of 3) intron (NM_001256547, intron 1 of 3) 146 NM_001193538 55863 Hs.525063 NM_018480 HPRD:13715 TMEM126B - transmembrane protein 126B protein-coding 561_WT_peak_7343 chr9 93970383 93970575 + 76 NA Intergenic Intergenic -133065 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 561_WT_peak_2977 chr17 2169920 2170173 + 76 NA promoter-TSS (NM_001256827) promoter-TSS (NM_001256827) -553 NM_001256827 23293 Hs.448342 NM_017575 HPRD:06502 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_2524 chr15 67374648 67374778 + 76 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) 16518 NM_005902 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 561_WT_peak_2799 chr16 31880862 31881145 + 76 NA Intergenic Intergenic -4076 NM_003414 10308 Hs.460645 NM_003414 HPRD:06883 ZNF267 HZF2 zinc finger protein 267 protein-coding 561_WT_peak_2377 chr14 102606258 102606448 + 76 NA promoter-TSS (NM_001017963) promoter-TSS (NM_001017963) 164 NM_001242416 91833 Hs.36859 NM_144574 HPRD:11679 WDR20 DMR WD repeat domain 20 protein-coding 561_WT_peak_793 chr1 232941097 232941500 + 76 NA exon (NM_019090, exon 1 of 1) exon (NM_019090, exon 1 of 1) 660 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule-associated protein 10 protein-coding 561_WT_peak_3480 chr18 32622435 32622639 + 76 NA intron (NR_046177, intron 1 of 6) intron (NR_046177, intron 1 of 6) 923 NR_046177 10982 Hs.532824 NM_014268 HPRD:16157 MAPRE2 EB1|EB2|RP1 microtubule-associated protein, RP/EB family, member 2 protein-coding 561_WT_peak_3668 chr19 16377399 16377691 + 76 NA Intergenic Intergenic -58106 NM_016270 10365 Hs.744182 NM_016270 HPRD:03602 KLF2 LKLF Kruppel-like factor 2 protein-coding 561_WT_peak_2357 chr14 99727324 99727651 + 76 NA intron (NM_022898, intron 1 of 2) intron (NM_022898, intron 1 of 2) 10563 NM_022898 64919 Hs.709690 NM_022898 HPRD:05950 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B (zinc finger protein) protein-coding 561_WT_peak_5573 chr4 107237101 107237355 + 76 NA promoter-TSS (NM_001142416) promoter-TSS (NM_001142416) 195 NM_001163435 93627 Hs.151498 NM_033115 HPRD:17514 TBCK TBCKL TBC1 domain containing kinase protein-coding 561_WT_peak_2222 chr14 55575109 55575261 + 75 NA Intergenic Intergenic -20750 NM_001177388 3958 Hs.531081 NM_002306 HPRD:01090 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 lectin, galactoside-binding, soluble, 3 protein-coding 561_WT_peak_4008 chr2 28613460 28613665 + 75 NA intron (NR_103831, intron 1 of 1) CpG -2217 NM_005253 2355 Hs.220971 NM_005253 FOSL2 FRA2 FOS-like antigen 2 protein-coding 561_WT_peak_5938 chr5 137688612 137688835 + 75 NA intron (NM_016604, intron 1 of 23) CpG 438 NM_016604 51780 Hs.483486 NM_016604 HPRD:11055 KDM3B 5qNCA|C5orf7|JMJD1B|NET22 lysine (K)-specific demethylase 3B protein-coding 561_WT_peak_6940 chr8 21777357 21777579 + 75 NA intron (NM_015024, intron 1 of 27) CpG 288 NM_015024 23039 Hs.172685 NM_015024 HPRD:05846 XPO7 EXP7|RANBP16 exportin 7 protein-coding 561_WT_peak_5187 chr3 101811405 101811849 + 75 NA Intergenic Intergenic 151924 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LOC152225 - uncharacterized LOC152225 ncRNA 561_WT_peak_4016 chr2 30670109 30670287 + 75 NA promoter-TSS (NM_001002257) promoter-TSS (NM_001002257) 61 NM_001002257 253558 Hs.468048 NM_182551 HPRD:17458 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 561_WT_peak_5763 chr5 56469057 56469445 + 75 NA promoter-TSS (NM_022913) promoter-TSS (NM_022913) -524 NM_022913 65056 Hs.444279 NM_022913 HPRD:16333 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 561_WT_peak_3027 chr17 7819419 7819777 + 75 NA promoter-TSS (NR_024349) promoter-TSS (NR_024349) -333 NR_024349 284023 Hs.744470 NR_024349 ENSG00000179859 LOC284023 - uncharacterized LOC284023 ncRNA 561_WT_peak_3141 chr17 36003123 36003449 + 75 NA intron (NM_001291476, intron 1 of 15) CpG 207 NM_001291476 11056 Hs.590937 NM_007010 HPRD:09911 DDX52 HUSSY19|ROK1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 protein-coding 561_WT_peak_2942 chr16 87902616 87902974 + 75 NA exon (NM_003486, exon 1 of 10) exon (NM_003486, exon 1 of 10) 305 NM_003486 8140 Hs.513797 NM_003486 HPRD:02552 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 protein-coding 561_WT_peak_2389 chr14 105948168 105948708 + 75 NA Intergenic Intergenic -4819 NM_001311 1396 Hs.70327 NM_001311 HPRD:00469 CRIP1 CRHP|CRIP|CRP-1|CRP1 cysteine-rich protein 1 (intestinal) protein-coding 561_WT_peak_4532 chr2 242702330 242702683 + 75 NA intron (NR_109778, intron 7 of 7) intron (NR_109778, intron 7 of 7) -13734 NM_022134 64090 Hs.632556 NM_022134 HPRD:16303 GAL3ST2 GAL3ST-2|GP3ST galactose-3-O-sulfotransferase 2 protein-coding 561_WT_peak_4085 chr2 61403924 61404297 + 75 NA promoter-TSS (NM_152392) promoter-TSS (NM_152392) -445 NM_152392 130872 Hs.655602 NM_152392 HPRD:16479 AHSA2 Hch1 AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast) protein-coding 561_WT_peak_6212 chr6 27760021 27760191 + 75 NA Intergenic Intergenic 15603 NM_003519 8340 Hs.137594 NM_003519 HPRD:11898 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1, H2bl protein-coding 561_WT_peak_740 chr1 224033886 224034238 + 75 NA promoter-TSS (NM_005426) promoter-TSS (NM_005426) -388 NM_005426 7159 Hs.523968 NM_005426 HPRD:11803 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 561_WT_peak_4317 chr2 136806862 136807046 + 75 NA Intergenic Intergenic -63700 NM_001293312 1615 Hs.503787 NM_001349 HPRD:04361 DARS HBSL|aspRS aspartyl-tRNA synthetase protein-coding 561_WT_peak_3740 chr19 37157877 37158106 + 75 NA promoter-TSS (NM_001297623) promoter-TSS (NM_001297623) -236 NM_001297623 92283 Hs.590972 NM_153257 HPRD:16358 ZNF461 GIOT-1|GIOT1 zinc finger protein 461 protein-coding 561_WT_peak_6263 chr6 30477048 30477241 + 75 NA Intergenic Intergenic 19961 NM_005516 3133 Hs.650174 NM_005516 HPRD:00877 HLA-E EA1.2|EA2.1|HLA-6.2|MHC|QA1 major histocompatibility complex, class I, E protein-coding 561_WT_peak_6725 chr7 75247253 75247438 + 75 NA intron (NM_005338, intron 1 of 30) intron (NM_005338, intron 1 of 30) -89892 NR_028059 5387 Hs.659871 NM_005395 HPRD:17866 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 postmeiotic segregation increased 2 pseudogene 3 pseudo 561_WT_peak_1472 chr11 107879605 107880057 + 75 NA 5' UTR (NM_003478, exon 1 of 19) 5' UTR (NM_003478, exon 1 of 19) 423 NM_003478 8065 Hs.440320 NM_003478 HPRD:03444 CUL5 VACM-1|VACM1 cullin 5 protein-coding 561_WT_peak_4368 chr2 174828096 174828416 + 75 NA intron (NM_001172712, intron 3 of 6) intron (NM_001172712, intron 3 of 6) 691 NM_001017371 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 561_WT_peak_3986 chr2 25496237 25496407 + 75 NA intron (NM_175629, intron 6 of 22) intron (NM_175629, intron 6 of 22) -21138 NM_153759 1788 Hs.515840 NM_022552 HPRD:04141 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA (cytosine-5-)-methyltransferase 3 alpha protein-coding 561_WT_peak_6806 chr7 105490030 105490202 + 75 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 26915 NM_020725 222255 Hs.745056 NM_020725 HPRD:12508 ATXN7L1 ATXN7L4 ataxin 7-like 1 protein-coding 561_WT_peak_952 chr10 35484513 35484812 + 75 NA promoter-TSS (NM_182724) promoter-TSS (NM_182724) -168 NM_001267570 1390 Hs.200250 NM_001881 HPRD:00444 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 561_WT_peak_1460 chr11 95657084 95657379 + 75 NA 5' UTR (NM_201278, exon 1 of 17) 5' UTR (NM_201278, exon 1 of 17) 140 NM_001243571 8898 Hs.181326 NM_016156 HPRD:04650 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 561_WT_peak_4600 chr20 31560027 31560307 + 75 NA Intergenic Intergenic 32072 NM_080675 140732 Hs.375186 NM_080675 HPRD:15422 SUN5 SPAG4L|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 561_WT_peak_456 chr1 146644171 146644418 + 75 NA promoter-TSS (NM_005399) promoter-TSS (NM_005399) -126 NM_005399 5565 Hs.50732 NM_005399 HPRD:04117 PRKAB2 - protein kinase, AMP-activated, beta 2 non-catalytic subunit protein-coding 561_WT_peak_343 chr1 101472287 101472498 + 75 NA intron (NM_001077395, intron 4 of 7) intron (NM_001077395, intron 4 of 7) 18970 NM_015958 51611 Hs.440776 NM_015958 DPH5 CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 561_WT_peak_1239 chr11 31531354 31531540 + 75 NA promoter-TSS (NM_144981) promoter-TSS (NM_144981) 171 NM_019040 26610 Hs.175534 NM_019040 HPRD:07377 ELP4 AN|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 561_WT_peak_34 chr1 6662528 6662715 + 75 NA exon (NM_014851, exon 1 of 4) exon (NM_014851, exon 1 of 4) 308 NM_014851 9903 Hs.7764 NM_014851 HPRD:17239 KLHL21 - kelch-like family member 21 protein-coding 561_WT_peak_5900 chr5 131392037 131392359 + 75 NA Intergenic Intergenic -4149 NM_000588 3562 Hs.694 NM_000588 HPRD:00987 IL3 IL-3|MCGF|MULTI-CSF interleukin 3 protein-coding 561_WT_peak_3493 chr18 43678460 43678637 + 75 NA promoter-TSS (NM_001257335) promoter-TSS (NM_001257335) -229 NM_004046 498 Hs.298280 NM_004046 HPRD:01258 ATP5A1 ATP5A|ATP5AL2|ATPM|HEL-S-123m|MC5DN4|MOM2|OMR|ORM|hATP1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle protein-coding 561_WT_peak_4039 chr2 42332592 42332784 + 75 NA Intergenic Intergenic 57527 NM_138370 91461 Hs.408542 NM_138370 HPRD:18707 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 561_WT_peak_7304 chr9 75747366 75747593 + 75 NA Intergenic Intergenic -19302 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 561_WT_peak_6669 chr7 50306456 50306801 + 75 NA Intergenic Intergenic -37051 NM_001291839 10320 Hs.435949 NM_006060 HPRD:04318 IKZF1 Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 (Ikaros) protein-coding 561_WT_peak_6344 chr6 47445185 47445991 + 75 NA promoter-TSS (NM_012120) promoter-TSS (NM_012120) 63 NM_012120 23607 Hs.485518 NM_012120 HPRD:05026 CD2AP CMS CD2-associated protein protein-coding 561_WT_peak_5824 chr5 76787967 76788246 + 75 NA 5' UTR (NM_018268, exon 1 of 13) 5' UTR (NM_018268, exon 1 of 13) 226 NM_018268 55255 Hs.482573 NM_018268 WDR41 - WD repeat domain 41 protein-coding 561_WT_peak_3886 chr19 53606865 53607061 + 75 NA promoter-TSS (NM_033288) promoter-TSS (NM_033288) -276 NM_033288 90338 Hs.655967 NM_033288 HPRD:11856 ZNF160 F11|HKr18|HZF5|KR18 zinc finger protein 160 protein-coding 561_WT_peak_4943 chr22 42084652 42084849 + 75 NA intron (NM_005008, intron 1 of 3) CpG 163 NM_005008 4809 Hs.182255 NM_005008 HPRD:03197 NHP2L1 15.5K|FA-1|FA1|NHPX|OTK27|SNRNP15-5|SNU13|SPAG12|SSFA1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) protein-coding 561_WT_peak_7611 chrX 129402894 129403132 + 75 NA promoter-TSS (NM_017666) promoter-TSS (NM_017666) -91 NM_017666 55609 Hs.308418 NM_017666 HPRD:06526 ZNF280C SUHW3|ZNF633 zinc finger protein 280C protein-coding 561_WT_peak_4426 chr2 198569565 198569869 + 75 NA promoter-TSS (NM_138395) promoter-TSS (NM_138395) -311 NM_138395 92935 Hs.744330 NM_138395 HPRD:14363 MARS2 MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 561_WT_peak_3262 chr17 56405985 56406156 + 75 NA promoter-TSS (NR_038412) promoter-TSS (NR_038412) 82 NM_024418 9256 Hs.112499 NM_004758 HPRD:09832 BZRAP1 PBR-IP|PRAX-1|PRAX1|RIM-BP1|RIMBP1 benzodiazepine receptor (peripheral) associated protein 1 protein-coding 561_WT_peak_6236 chr6 28234673 28234991 + 75 NA promoter-TSS (NM_001023560) promoter-TSS (NM_001023560) 44 NM_001111039 7741 Hs.157883 NM_007151 ZSCAN26 SRE-ZBP|ZNF187 zinc finger and SCAN domain containing 26 protein-coding 561_WT_peak_242 chr1 53102826 53103219 + 75 NA intron (NM_001042693, intron 1 of 2) intron (NM_001042693, intron 1 of 2) 3956 NM_001042693 348378 Hs.424589 NM_182621 HPRD:14678 FAM159A PRO7171|WWLS2783 family with sequence similarity 159, member A protein-coding 561_WT_peak_3314 chr17 64709702 64709888 + 75 NA intron (NM_002737, intron 8 of 16) intron (NM_002737, intron 8 of 16) -73395 NR_030364 693219 NR_030364 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 561_WT_peak_398 chr1 115124361 115124644 + 75 NA promoter-TSS (NM_005872) promoter-TSS (NM_005872) -237 NM_005872 10286 Hs.22960 NM_005872 HPRD:05777 BCAS2 DAM1|SPF27|Snt309 breast carcinoma amplified sequence 2 protein-coding 561_WT_peak_3271 chr17 57286941 57287119 + 75 NA promoter-TSS (NM_018149) promoter-TSS (NM_018149) -341 NM_018149 55181 Hs.7296 NM_018149 HPRD:08551 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_4039-2 chr2 42332990 42333269 + 75 NA Intergenic Intergenic 57968 NM_138370 91461 Hs.408542 NM_138370 HPRD:18707 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 561_WT_peak_3596 chr19 6481857 6481997 + 75 NA promoter-TSS (NM_001290331) promoter-TSS (NM_001290331) -108 NM_001290331 79958 Hs.236449 NM_024898 HPRD:13304 DENND1C FAM31C DENN/MADD domain containing 1C protein-coding 561_WT_peak_4496 chr2 232651087 232651259 + 75 NA promoter-TSS (NM_022730) promoter-TSS (NM_022730) 80 NM_001282952 64708 Hs.335061 NM_022730 HPRD:09889 COPS7B CSN7B|SGN7b COP9 signalosome subunit 7B protein-coding 561_WT_peak_5905 chr5 131812822 131812969 + 75 NA Intergenic Intergenic 13570 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 561_WT_peak_5182 chr3 101497780 101498042 + 74 NA promoter-TSS (NM_001134456) promoter-TSS (NM_001134456) -118 NM_145037 91775 Hs.595933 NM_145037 HPRD:10073 NXPE3 FAM55C|MST115 neurexophilin and PC-esterase domain family, member 3 protein-coding 561_WT_peak_661 chr1 192485988 192486238 + 74 NA Intergenic Intergenic -58744 NM_002922 5996 Hs.75256 NM_002922 HPRD:15968 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 561_WT_peak_7405 chr9 117481190 117481455 + 74 NA Intergenic Intergenic -36953 NM_001199233 100505478 Hs.200101 NM_001199233 LOC100505478 - uncharacterized LOC100505478 protein-coding 561_WT_peak_4237 chr2 101869528 101869737 + 74 NA exon (NM_017546, exon 1 of 7) exon (NM_017546, exon 1 of 7) 287 NM_017546 55571 Hs.744080 NM_017546 HPRD:12812 CNOT11 C2orf29 CCR4-NOT transcription complex, subunit 11 protein-coding 561_WT_peak_68 chr1 14075376 14075597 + 74 NA promoter-TSS (NM_001007257) promoter-TSS (NM_001007257) -390 NM_001007257 7799 Hs.371823 NM_012231 HPRD:03120 PRDM2 HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2 PR domain containing 2, with ZNF domain protein-coding 561_WT_peak_2486 chr15 52472274 52472473 + 74 NA promoter-TSS (NM_006578) promoter-TSS (NM_006578) 150 NR_102751 100129973 Hs.569494 NR_102751 LOC100129973 - uncharacterized LOC100129973 ncRNA 561_WT_peak_1369 chr11 65627872 65628135 + 74 NA 5' UTR (NM_025128, exon 1 of 16) 5' UTR (NM_025128, exon 1 of 16) 131 NM_025128 80198 Hs.288798 NM_025128 HPRD:09419 MUS81 SLX3 MUS81 structure-specific endonuclease subunit protein-coding 561_WT_peak_450 chr1 145826689 145826863 + 74 NA promoter-TSS (NR_104217).2 promoter-TSS (NR_104217).2 327 NM_001097613 653519 Hs.504320 NM_001097612 ENSG00000117262 GPR89A GPHR|GPR89|GPR89B|SH120|UNQ192 G protein-coupled receptor 89A protein-coding 561_WT_peak_3915 chr19 57901262 57901597 + 74 NA 5' UTR (NM_001172773, exon 1 of 4) 5' UTR (NM_001172773, exon 1 of 4) 211 NM_001172773 147694 Hs.126905 NM_152909 ZNF548 - zinc finger protein 548 protein-coding 561_WT_peak_201 chr1 42921572 42921797 + 74 NA promoter-TSS (NM_001287508) promoter-TSS (NM_001287508) 254 NM_001146192 84217 Hs.294009 NM_032257 HPRD:15740 ZMYND12 - zinc finger, MYND-type containing 12 protein-coding 561_WT_peak_3595 chr19 6460229 6460484 + 74 NA promoter-TSS (NM_024103) promoter-TSS (NM_024103) -575 NM_024103 79085 Hs.356231 NM_024103 HPRD:16381 SLC25A23 APC2|MCSC2|SCaMC-3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 protein-coding 561_WT_peak_4464 chr2 214149144 214149433 + 74 NA promoter-TSS (NM_001242575) promoter-TSS (NM_001242575) 185 NR_047659 79582 Hs.743365 NM_024532 HPRD:18089 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 561_WT_peak_1141 chr10 111682931 111683215 + 74 NA intron (NM_020383, intron 1 of 20) CpG 238 NM_001167604 7511 Hs.390623 NM_020383 HPRD:03899 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble protein-coding 561_WT_peak_113 chr1 25559233 25559608 + 74 NA promoter-TSS (NM_015484) promoter-TSS (NM_015484) -407 NM_207170 25949 Hs.20013 NM_015484 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA-splicing factor protein-coding 561_WT_peak_943 chr10 32666616 32666896 + 74 NA intron (NM_001282391, intron 1 of 13) intron (NM_001282391, intron 1 of 13) 970 NM_001282391 80314 Hs.167805 NM_025209 HPRD:09941 EPC1 Epl1 enhancer of polycomb homolog 1 (Drosophila) protein-coding 561_WT_peak_1994 chr13 37574085 37574224 + 74 NA promoter-TSS (NM_013338) promoter-TSS (NM_013338) -524 NM_181503 11340 Hs.294041 NM_181503 HPRD:09351 EXOSC8 CIP3|EAP2|OIP2|RRP43|Rrp43p|bA421P11.3|p9 exosome component 8 protein-coding 561_WT_peak_3800 chr19 45954951 45955116 + 74 NA Intergenic Intergenic -16220 NM_001114171 2354 Hs.590958 NM_006732 HPRD:01270 FOSB AP-1|G0S3|GOS3|GOSB FBJ murine osteosarcoma viral oncogene homolog B protein-coding 561_WT_peak_6458 chr6 119635121 119635340 + 74 NA intron (NM_005907, intron 2 of 12) intron (NM_005907, intron 2 of 12) 35701 NM_005907 4121 Hs.102788 NM_005907 HPRD:05066 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase, alpha, class 1A, member 1 protein-coding 561_WT_peak_1178 chr11 314036 314315 + 74 NA exon (NM_003641, exon 1 of 2) exon (NM_003641, exon 1 of 2) 184 NM_003641 8519 Hs.458414 NM_003641 HPRD:05122 IFITM1 9-27|CD225|DSPA2a|IFI17|LEU13 interferon induced transmembrane protein 1 protein-coding 561_WT_peak_5274 chr3 141030479 141030819 + 74 NA Intergenic CpG -12406 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 561_WT_peak_1267 chr11 46615305 46615599 + 74 NA 5' UTR (NM_001267783, exon 1 of 18) 5' UTR (NM_001267783, exon 1 of 18) 167 NM_001300731 55626 Hs.654644 NM_017749 HPRD:10975 AMBRA1 DCAF3|WDR94 autophagy/beclin-1 regulator 1 protein-coding 561_WT_peak_4513 chr2 237445517 237445623 + 74 NA Intergenic MIRb|SINE|MIR -29392 NR_073043 79781 Hs.591594 NM_024726 HPRD:13743 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 561_WT_peak_5833 chr5 79703442 79703671 + 74 NA promoter-TSS (NM_014733) promoter-TSS (NM_014733) -276 NM_001284236 9765 Hs.482660 NM_014733 HPRD:10319 ZFYVE16 PPP1R69 zinc finger, FYVE domain containing 16 protein-coding 561_WT_peak_3995 chr2 27008473 27008731 + 74 NA promoter-TSS (NM_001042426) promoter-TSS (NM_001042426) -280 NM_001809 1058 Hs.1594 NM_001809 HPRD:00313 CENPA CENP-A|CenH3 centromere protein A protein-coding 561_WT_peak_842 chr10 1015737 1015949 + 74 NA Intergenic Intergenic -18506 NM_012341 23560 Hs.215766 NM_012341 HPRD:09976 GTPBP4 CRFG|NGB|NOG1 GTP binding protein 4 protein-coding 561_WT_peak_3871 chr19 50861937 50862136 + 74 NA exon (NM_004851, exon 9 of 9) exon (NM_004851, exon 9 of 9) 6895 NM_004851 9476 Hs.512843 NM_004851 HPRD:07064 NAPSA KAP|Kdap|NAP1|NAPA|SNAPA napsin A aspartic peptidase protein-coding 561_WT_peak_5351 chr3 186649707 186649886 + 74 NA intron (NM_173216, intron 1 of 7) intron (NM_173216, intron 1 of 7) 1481 NM_173217 6480 Hs.207459 NM_003032 HPRD:00184 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding 561_WT_peak_3074 chr17 19881477 19881714 + 74 NA promoter-TSS (NM_007202) promoter-TSS (NM_007202) -426 NM_007202 11216 Hs.642676 NM_007202 HPRD:05259 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A kinase (PRKA) anchor protein 10 protein-coding 561_WT_peak_6838 chr7 128694735 128694945 + 74 NA promoter-TSS (NR_002187) promoter-TSS (NR_002187) 387 NM_012470 23534 Hs.193613 NM_012470 HPRD:18209 TNPO3 IPO12|LGMD1F|MTR10A|TRN-SR|TRN-SR2|TRNSR transportin 3 protein-coding 561_WT_peak_5738 chr5 52021342 52021529 + 74 NA Intergenic Intergenic -62339 NM_015946 53918 Hs.644352 NM_015946 PELO PRO1770 pelota homolog (Drosophila) protein-coding 561_WT_peak_161 chr1 33266780 33266991 + 74 NA intron (NM_003680, intron 4 of 12) Tigger1|DNA|TcMar-Tigger -16158 NM_001256121 64766 Hs.440880 NM_022753 HPRD:07803 S100PBP S100PBPR S100P binding protein protein-coding 561_WT_peak_6924 chr8 182439 182633 + 74 NA promoter-TSS (NR_003572) promoter-TSS (NR_003572) -14 NM_001287254 169270 Hs.591388 NM_173539 HPRD:11731 ZNF596 - zinc finger protein 596 protein-coding 561_WT_peak_2078 chr13 79967053 79967236 + 74 NA intron (NM_001286632, intron 1 of 20) L1MCc|LINE|L1 13212 NM_001286632 64062 Hs.558528 NM_018605 HPRD:12611 RBM26 ARRS2|C13orf10|PPP1R132|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 561_WT_peak_3217 chr17 44657371 44657500 + 74 NA promoter-TSS (NM_001288813) promoter-TSS (NM_001288813) -347 NM_001288811 51326 Hs.559259 NM_016632 HPRD:17424 ARL17A ARF1P2|ARL17P1 ADP-ribosylation factor-like 17A protein-coding 561_WT_peak_1725 chr12 56520016 56520166 + 74 NA Intergenic Intergenic -1895 NM_015292 23344 Hs.632729 NM_015292 HPRD:14367 ESYT1 FAM62A|MBC2 extended synaptotagmin-like protein 1 protein-coding 561_WT_peak_4475 chr2 219761253 219761533 + 74 NA Intergenic Intergenic 16138 NM_025216 80326 Hs.121540 NM_025216 HPRD:16207 WNT10A OODD|SSPS|STHAG4 wingless-type MMTV integration site family, member 10A protein-coding 561_WT_peak_6531 chr6 157801031 157801224 + 74 NA Intergenic CpG -1430 NM_153746 79683 Hs.596214 NM_024630 HPRD:15711 ZDHHC14 NEW1CP zinc finger, DHHC-type containing 14 protein-coding 561_WT_peak_6399 chr6 91134782 91135005 + 74 NA Intergenic L2a|LINE|L2 112432 NR_039671 100616109 NR_039671 miRBase:MI0016812 MIR4464 - microRNA 4464 ncRNA 561_WT_peak_2208 chr14 52313825 52314242 + 74 NA Intergenic Intergenic -12989 NM_053064 54331 Hs.187772 NM_053064 HPRD:16234 GNG2 - guanine nucleotide binding protein (G protein), gamma 2 protein-coding 561_WT_peak_5078 chr3 44379991 44380161 + 74 NA 5' UTR (NM_001282914, exon 1 of 11) 5' UTR (NM_001282914, exon 1 of 11) 132 NM_173826 285343 Hs.55131 NM_173826 HPRD:13184 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 561_WT_peak_5595 chr4 130014214 130014514 + 74 NA promoter-TSS (NM_173487) promoter-TSS (NM_173487) 398 NM_001300898 132320 Hs.654690 NM_144643 HPRD:08700 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 561_WT_peak_2292 chr14 75535799 75536095 + 74 NA promoter-TSS (NM_001042430) promoter-TSS (NM_001042430) -333 NM_024643 79696 Hs.48642 NM_024643 HPRD:16607 ZC2HC1C C14orf140|FAM164C zinc finger, C2HC-type containing 1C protein-coding 561_WT_peak_3911 chr19 57791211 57791742 + 74 NA promoter-TSS (NM_006635) promoter-TSS (NM_006635) -377 NM_006635 10794 Hs.99971 NM_006635 HPRD:06885 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 561_WT_peak_1290 chr11 57434668 57434882 + 74 NA promoter-TSS (NM_015457) promoter-TSS (NM_015457) -699 NM_015457 25921 Hs.27239 NM_015457 HPRD:15720 ZDHHC5 DHHC5|ZNF375 zinc finger, DHHC-type containing 5 protein-coding 561_WT_peak_2200 chr14 50466086 50466426 + 74 NA intron (NM_001012706, intron 1 of 3) intron (NM_001012706, intron 1 of 3) 7982 NM_001012706 283551 Hs.660867 NM_001012706 HPRD:13397 C14orf182 - chromosome 14 open reading frame 182 protein-coding 561_WT_peak_8 chr1 1093371 1093559 + 74 NA Intergenic CpG -9019 NR_029639 406984 NR_029639 miRBase:MI0000342 MIR200B MIRN200B microRNA 200b ncRNA 561_WT_peak_6921 chr7 158611050 158611349 + 74 NA intron (NM_020728, intron 1 of 21) intron (NM_020728, intron 1 of 21) 11120 NM_020728 57488 Hs.490795 NM_020728 HPRD:13053 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin-like protein 2 protein-coding 561_WT_peak_3541 chr19 70544 70970 + 74 NA intron (NR_033266, intron 1 of 2) CpG 209 NR_033266 375690 Hs.521961 NR_033266 WASH5P - WAS protein family homolog 5 pseudogene pseudo 561_WT_peak_5365 chr3 194992268 194992508 + 74 NA promoter-TSS (NM_152531) promoter-TSS (NM_152531) -493 NM_152531 152002 Hs.478741 NM_152531 HPRD:08757 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 561_WT_peak_1978 chr13 31039700 31040017 + 74 NA intron (NM_002128, intron 1 of 4) GC_rich|Low_complexity|Low_complexity 223 NM_002128 3146 Hs.434102 NM_002128 HPRD:01228 HMGB1 HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 561_WT_peak_86 chr1 19536562 19536764 + 74 NA promoter-TSS (NM_020765) promoter-TSS (NM_020765) 83 NM_020765 23352 Hs.148078 NM_020765 HPRD:10184 UBR4 RBAF600|ZUBR1|p600 ubiquitin protein ligase E3 component n-recognin 4 protein-coding 561_WT_peak_4774 chr21 34696684 34696830 + 74 NA promoter-TSS (NM_000629) promoter-TSS (NM_000629) -457 NM_000629 3454 Hs.529400 NM_000629 HPRD:00126 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon (alpha, beta and omega) receptor 1 protein-coding 561_WT_peak_7243 chr9 33167540 33167900 + 74 NA promoter-TSS (NM_001497) promoter-TSS (NM_001497) -137 NR_108108 101929639 Hs.545818 NR_108108 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 561_WT_peak_826 chr1 244816020 244816199 + 74 NA promoter-TSS (NM_016076) promoter-TSS (NM_016076) -241 NM_001297746 51029 Hs.498317 NM_016076 HPRD:15153 DESI2 C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 561_WT_peak_4118 chr2 68694444 68694657 + 74 NA promoter-TSS (NM_173545) promoter-TSS (NM_173545) -141 NM_173545 200558 Hs.720369 NM_173545 HPRD:09848 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 561_WT_peak_3935 chr19 58892131 58892374 + 74 NA intron (NR_049780, intron 1 of 2) CpG 137 NR_049780 116412 Hs.222236 NM_138466 ENSG00000152475 ZNF837 - zinc finger protein 837 protein-coding 561_WT_peak_251 chr1 55181437 55181567 + 74 NA promoter-TSS (NM_004623) promoter-TSS (NM_004623) 7 NM_001291333 7268 Hs.412482 NM_004623 HPRD:08417 TTC4 - tetratricopeptide repeat domain 4 protein-coding 561_WT_peak_1930 chr12 133338933 133339116 + 74 NA promoter-TSS (NM_015114) promoter-TSS (NM_015114) -550 NM_015114 23141 Hs.654628 NM_015114 ENSG00000176915 ANKLE2 KIAA0692|LEMD7|Lem4 ankyrin repeat and LEM domain containing 2 protein-coding 561_WT_peak_140 chr1 28495912 28496128 + 74 NA intron (NM_001164722, intron 1 of 1) MIR|SINE|MIR 7435 NM_000952 5724 Hs.77542 NM_000952 HPRD:01422 PTAFR PAFR platelet-activating factor receptor protein-coding 561_WT_peak_5459 chr4 44680408 44680785 + 74 NA 5' UTR (NM_021927, exon 1 of 17) 5' UTR (NM_021927, exon 1 of 17) 163 NM_021927 60558 Hs.546419 NM_021927 HPRD:07821 GUF1 EF-4 GUF1 GTPase homolog (S. cerevisiae) protein-coding 561_WT_peak_4510 chr2 235372726 235372924 + 74 NA Intergenic Intergenic 32868 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 561_WT_peak_2274 chr14 71787527 71787754 + 74 NA Intergenic CpG -77414 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 561_WT_peak_2463 chr15 45018957 45019137 + 74 NA Intergenic Intergenic -2139 NR_125376 100419583 Hs.489254 NR_125376 LOC100419583 - ring finger protein 4 pseudogene pseudo 561_WT_peak_2369 chr14 102284105 102284344 + 74 NA intron (NM_178586, intron 1 of 12) intron (NM_178586, intron 1 of 12) 8084 NM_178587 5527 Hs.368264 NM_002719 HPRD:03385 PPP2R5C B56G|PR61G protein phosphatase 2, regulatory subunit B', gamma protein-coding 561_WT_peak_2252 chr14 64108273 64108520 + 74 NA 5' UTR (NM_001258272, exon 1 of 3) 5' UTR (NM_001258272, exon 1 of 3) 245 NM_001008726 112840 Hs.655666 NM_080666 WDR89 C14orf150 WD repeat domain 89 protein-coding 561_WT_peak_65 chr1 12494197 12494582 + 74 NA intron (NM_015378, intron 65 of 69) intron (NM_015378, intron 65 of 69) -72911 NR_003025 677885 Hs.658450 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 561_WT_peak_6865 chr7 139024835 139025105 + 74 NA promoter-TSS (NM_001244584) promoter-TSS (NM_001244584) -135 NM_001244585 51631 Hs.731488 NM_016019 HPRD:17456 LUC7L2 CGI-74|LUC7B2 LUC7-like 2 (S. cerevisiae) protein-coding 561_WT_peak_5253 chr3 130060305 130060476 + 74 NA Intergenic Intergenic -3969 NM_001278298 256076 Hs.205403 NM_153264 HPRD:08196 COL6A5 COL29A1|VWA4 collagen, type VI, alpha 5 protein-coding 561_WT_peak_2104 chr13 113527464 113527651 + 74 NA intron (NM_032189, intron 26 of 28) intron (NM_032189, intron 26 of 28) 95395 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 561_WT_peak_3435 chr18 11851405 11851756 + 74 NA exon (NM_020412, exon 1 of 1) exon (NM_020412, exon 1 of 1) 191 NM_020412 57132 Hs.656244 NM_020412 HPRD:12106 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 561_WT_peak_218 chr1 45769604 45769946 + 73 NA non-coding (NR_024270, exon 1 of 1) non-coding (NR_024270, exon 1 of 1) 193 NR_024270 400752 Hs.334348 NR_024270 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 561_WT_peak_4252 chr2 111604576 111604818 + 73 NA intron (NM_001142807, intron 10 of 17) intron (NM_001142807, intron 10 of 17) 114547 NM_001142807 55289 Hs.253320 NM_018308 HPRD:12418 ACOXL - acyl-CoA oxidase-like protein-coding 561_WT_peak_4492 chr2 232410292 232410529 + 73 NA Intergenic Intergenic -15228 NM_006056 10316 Hs.471619 NM_006056 HPRD:16039 NMUR1 (FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R neuromedin U receptor 1 protein-coding 561_WT_peak_4077 chr2 55529567 55529742 + 73 NA intron (NM_018084, intron 25 of 31) intron (NM_018084, intron 25 of 31) 20199 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 561_WT_peak_1053 chr10 75541741 75541979 + 73 NA promoter-TSS (NM_203298) promoter-TSS (NM_203298) 52 NM_203298 118487 Hs.181174 NM_203298 HPRD:12313 CHCHD1 C10orf34|C2360|MRP-S37 coiled-coil-helix-coiled-coil-helix domain containing 1 protein-coding 561_WT_peak_6554 chr6 170102219 170102930 + 73 NA promoter-TSS (NM_001202550) promoter-TSS (NM_001202550) 317 NM_001029863 387263 Hs.591375 NM_001029863 ENSG00000185127 C6orf120 bA160E12.4 chromosome 6 open reading frame 120 protein-coding 561_WT_peak_7322 chr9 86571602 86571802 + 73 NA promoter-TSS (NM_032307) promoter-TSS (NM_032307) -39 NM_032307 84267 Hs.208914 NM_032307 HPRD:12969 C9orf64 - chromosome 9 open reading frame 64 protein-coding 561_WT_peak_699 chr1 205601177 205601387 + 73 NA 5' UTR (NM_001973, exon 1 of 5) 5' UTR (NM_001973, exon 1 of 5) 718 NM_001973 2005 Hs.497520 NM_001973 HPRD:02592 ELK4 SAP1 ELK4, ETS-domain protein (SRF accessory protein 1) protein-coding 561_WT_peak_5278 chr3 141261596 141261812 + 73 NA intron (NM_006506, intron 5 of 23) L1MD2|LINE|L1 55778 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 561_WT_peak_5388 chr4 1261728 1261943 + 73 NA Intergenic LTR13|LTR|ERVK 18607 NR_033339 92070 Hs.561314 NM_052861 CTBP1-AS2 C4orf42|CTBP1-AS1 CTBP1 antisense RNA 2 (head to head) ncRNA 561_WT_peak_47 chr1 9006592 9006856 + 73 NA intron (NM_001270502, intron 1 of 5) intron (NM_001270502, intron 1 of 5) 831 NM_001270502 765 Hs.100322 NM_001215 HPRD:00264 CA6 CA-VI|GUSTIN carbonic anhydrase VI protein-coding 561_WT_peak_3065 chr17 18761495 18761830 + 73 NA intron (NM_001243941, intron 1 of 9) CpG 281 NM_001243941 5636 Hs.632236 NM_002767 HPRD:04789 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase-associated protein 2 protein-coding 561_WT_peak_4932 chr22 41214668 41214940 + 73 NA intron (NR_104235, intron 1 of 10) intron (NR_104235, intron 1 of 10) 599 NR_104236 10478 Hs.474938 NM_006358 HPRD:08425 SLC25A17 PMP34 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17 protein-coding 561_WT_peak_7436 chr9 130790848 130791053 + 73 NA Intergenic HAL1|LINE|L1 38649 NM_197956 203245 Hs.373606 NM_197956 HPRD:12987 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 561_WT_peak_6031 chr5 175875213 175875693 + 73 NA promoter-TSS (NM_014613) promoter-TSS (NM_014613) 97 NM_014613 23197 Hs.484242 NM_014613 HPRD:16870 FAF2 ETEA|UBXD8|UBXN3B Fas associated factor family member 2 protein-coding 561_WT_peak_6278 chr6 31620259 31620444 + 73 NA promoter-TSS (NM_001098534).5 promoter-TSS (NM_001098534).5 126 NM_001199697 7917 Hs.440900 NM_004639 HPRD:00808 BAG6 BAG-6|BAT3|D6S52E|G3 BCL2-associated athanogene 6 protein-coding 561_WT_peak_2140 chr14 23790776 23791029 + 73 NA exon (NM_004643, exon 1 of 7) exon (NM_004643, exon 1 of 7) 1505 NM_004643 8106 Hs.707712 NM_004643 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein, nuclear 1 protein-coding 561_WT_peak_2763 chr16 29611639 29611850 + 73 NA Intergenic (CAGCC)n|Simple_repeat|Simple_repeat 13294 NR_002593 81893 Hs.677169 NM_031211 HPRD:13964 SLC7A5P1 DC49|LAT1-3TM|MLAS|hLAT1-3TM solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 pseudo 561_WT_peak_4225 chr2 97778648 97779530 + 73 NA promoter-TSS (NM_001164315) promoter-TSS (NM_001164315) -144 NM_001164315 375248 Hs.541894 NM_198555 HPRD:16492 ANKRD36 UNQ2430 ankyrin repeat domain 36 protein-coding 561_WT_peak_5894 chr5 130599455 130599626 + 73 NA promoter-TSS (NM_001038702) promoter-TSS (NM_001038702) -162 NM_001038702 56990 Hs.508829 NM_020240 HPRD:16695 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 561_WT_peak_6225-2 chr6 27807109 27807254 + 73 NA TTS (NM_003520) TTS (NM_003520) 741 NM_003520 8341 Hs.534368 NM_003520 HPRD:11899 HIST1H2BN H2B/d|H2BFD histone cluster 1, H2bn protein-coding 561_WT_peak_2957 chr16 89753163 89753381 + 73 NA intron (NR_027703, intron 1 of 11) CpG 196 NR_027702 8558 Hs.699177 NM_003674 ENSG00000185324 CDK10 PISSLRE cyclin-dependent kinase 10 protein-coding 561_WT_peak_4217 chr2 97009904 97010241 + 73 NA intron (NM_001281710, intron 6 of 17) intron (NM_001281710, intron 6 of 17) 8593 NM_015341 23397 Hs.308045 NM_015341 HPRD:03820 NCAPH BRRN1|CAP-H non-SMC condensin I complex, subunit H protein-coding 561_WT_peak_4151 chr2 74684814 74685013 + 73 NA promoter-TSS (NM_012477) promoter-TSS (NM_012477) -614 NM_012477 23559 Hs.516114 NM_012477 HPRD:09510 WBP1 WBP-1 WW domain binding protein 1 protein-coding 561_WT_peak_7106 chr8 104473843 104474054 + 73 NA Intergenic Intergenic -39028 NM_001100117 9699 Hs.655271 NM_014677 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 561_WT_peak_7464 chr9 134151792 134152009 + 73 NA promoter-TSS (NM_033387) promoter-TSS (NM_033387) 6 NM_033387 286336 Hs.143878 NM_033387 HPRD:12968 FAM78A C9orf59 family with sequence similarity 78, member A protein-coding 561_WT_peak_998 chr10 53459778 53460057 + 73 NA promoter-TSS (NM_015235) promoter-TSS (NM_015235) -562 NM_015235 23283 Hs.591358 NM_015235 HPRD:09900 CSTF2T CstF-64T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant protein-coding 561_WT_peak_7146 chr8 126620210 126620435 + 73 NA Intergenic Intergenic 175871 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 561_WT_peak_5703 chr5 40407074 40407237 + 73 NA Intergenic Intergenic -272877 NM_000958 5734 Hs.199248 NM_000958 HPRD:03350 PTGER4 EP4|EP4R prostaglandin E receptor 4 (subtype EP4) protein-coding 561_WT_peak_1061 chr10 76345115 76345327 + 73 NA intron (NM_001123, intron 7 of 10) intron (NM_001123, intron 7 of 10) -56139 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 561_WT_peak_1708 chr12 53718856 53719165 + 73 NA Intergenic CpG -3598 NM_015665 8086 Hs.369144 NM_015665 HPRD:05646 AAAS AAA|AAASb|ADRACALA|ADRACALIN|ALADIN achalasia, adrenocortical insufficiency, alacrimia protein-coding 561_WT_peak_332 chr1 95699691 95700101 + 73 NA intron (NM_001199682, intron 1 of 3) CpG 185 NM_001278247 25950 Hs.483512 NM_015485 HPRD:11527 RWDD3 RSUME RWD domain containing 3 protein-coding 561_WT_peak_603 chr1 167190204 167190358 + 73 NA intron (NM_001198786, intron 1 of 14) CpG 158 NR_037163 5451 Hs.283402 NM_002697 HPRD:01250 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 561_WT_peak_769 chr1 228645995 228646307 + 73 NA promoter-TSS (NM_033445) promoter-TSS (NM_033445) 343 NM_175055 128312 Hs.376691 NM_175055 HPRD:13661 HIST3H2BB H2Bb histone cluster 3, H2bb protein-coding 561_WT_peak_5809 chr5 72861050 72861225 + 73 NA promoter-TSS (NM_001284431) promoter-TSS (NM_001284431) 374 NM_023039 57763 Hs.239154 NM_023039 HPRD:12044 ANKRA2 ANKRA ankyrin repeat, family A (RFXANK-like), 2 protein-coding 561_WT_peak_4935 chr22 41487226 41487423 + 73 NA Intergenic CpG -1193 NR_031694 100302237 NR_031694 miRBase:MI0006428 MIR1281 MIRN1281|hsa-mir-1281 microRNA 1281 ncRNA 561_WT_peak_7341 chr9 93925050 93925713 + 73 NA Intergenic Intergenic -87967 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 561_WT_peak_6405 chr6 96025568 96025794 + 73 NA promoter-TSS (NR_047502) promoter-TSS (NR_047502) 308 NM_024641 79694 Hs.734632 NM_024641 HPRD:14357 MANEA ENDO|hEndo mannosidase, endo-alpha protein-coding 561_WT_peak_4443 chr2 202316237 202316438 + 73 NA promoter-TSS (NM_001206864) promoter-TSS (NM_001206864) -18 NM_015049 66008 Hs.152774 NM_015049 HPRD:09547 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking protein, kinesin binding 2 protein-coding 561_WT_peak_5375 chr3 197281548 197281786 + 73 NA intron (NM_203314, intron 1 of 7) CpG 1191 NM_203314 622 Hs.274539 NM_004051 HPRD:04344 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase, type 1 protein-coding 561_WT_peak_4944 chr22 42085014 42085279 + 73 NA promoter-TSS (NM_005008) promoter-TSS (NM_005008) -233 NM_001003796 4809 Hs.182255 NM_005008 HPRD:03197 NHP2L1 15.5K|FA-1|FA1|NHPX|OTK27|SNRNP15-5|SNU13|SPAG12|SSFA1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) protein-coding 561_WT_peak_5076 chr3 43732126 43732300 + 73 NA promoter-TSS (NM_016006) promoter-TSS (NM_016006) -162 NM_016006 51099 Hs.19385 NM_016006 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 561_WT_peak_1545 chr12 1058856 1059144 + 73 NA promoter-TSS (NM_001297421) promoter-TSS (NM_001297421) -112 NM_001297422 5893 Hs.410355 NM_134422 HPRD:11855 RAD52 - RAD52 homolog (S. cerevisiae) protein-coding 561_WT_peak_5035 chr3 20096346 20096527 + 73 NA intron (NM_003884, intron 1 of 17) intron (NM_003884, intron 1 of 17) 14912 NM_003884 8850 Hs.533055 NM_003884 HPRD:06780 KAT2B CAF|P/CAF|PCAF K(lysine) acetyltransferase 2B protein-coding 561_WT_peak_1864 chr12 112819853 112820124 + 73 NA promoter-TSS (NM_001109662) promoter-TSS (NM_001109662) -92 NM_001109662 283450 Hs.530943 NM_173813 HPRD:08170 HECTD4 C12orf51|POTAGE HECT domain containing E3 ubiquitin protein ligase 4 protein-coding 561_WT_peak_4603 chr20 32320150 32320358 + 73 NA intron (NR_104259, intron 1 of 13) CpG 688 NM_001282935 84905 Hs.516989 NM_032819 HPRD:15781 ZNF341 - zinc finger protein 341 protein-coding 561_WT_peak_5225 chr3 120067714 120067951 + 73 NA exon (NM_001099678, exon 1 of 4) exon (NM_001099678, exon 1 of 4) 354 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 561_WT_peak_6225 chr6 27806725 27806909 + 73 NA promoter-TSS (NM_003510) promoter-TSS (NM_003510) 377 NM_003520 8341 Hs.534368 NM_003520 HPRD:11899 HIST1H2BN H2B/d|H2BFD histone cluster 1, H2bn protein-coding 561_WT_peak_6867 chr7 139044140 139044411 + 73 NA promoter-TSS (NM_001270643) promoter-TSS (NM_001270643) -317 NM_016019 51631 Hs.731488 NM_016019 HPRD:17456 LUC7L2 CGI-74|LUC7B2 LUC7-like 2 (S. cerevisiae) protein-coding 561_WT_peak_2451 chr15 43477591 43477805 + 73 NA TTS (NM_024956) TTS (NM_024956) 232 NR_027513 23582 Hs.36794 NM_012142 CCNDBP1 DIP1|GCIP|HHM cyclin D-type binding-protein 1 protein-coding 561_WT_peak_4627 chr20 36155959 36156309 + 72 NA promoter-TSS (NM_001167821) promoter-TSS (NM_001167821) 0 NM_001167821 10904 Hs.472651 NM_006698 HPRD:16552 BLCAP BC10 bladder cancer associated protein protein-coding 561_WT_peak_5189 chr3 105471859 105472128 + 72 NA intron (NM_170662, intron 4 of 18) intron (NM_170662, intron 4 of 18) 115894 NM_170662 868 Hs.430589 NM_170662 HPRD:05136 CBLB Cbl-b|RNF56 Cbl proto-oncogene B, E3 ubiquitin protein ligase protein-coding 561_WT_peak_415 chr1 121200564 121200791 + 72 NA Intergenic Intergenic -60233 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 561_WT_peak_60 chr1 11724832 11725059 + 72 NA intron (NM_018438, intron 1 of 5) intron (NM_018438, intron 1 of 5) 795 NM_018438 26270 Hs.464419 NM_018438 HPRD:07291 FBXO6 FBG2|FBS2|FBX6|Fbx6b F-box protein 6 protein-coding 561_WT_peak_1260 chr11 43380480 43380720 + 72 NA exon (NM_018259, exon 1 of 24) exon (NM_018259, exon 1 of 24) 165 NM_018259 55761 Hs.191186 NM_018259 HPRD:15582 TTC17 - tetratricopeptide repeat domain 17 protein-coding 561_WT_peak_7173 chr8 141606914 141607117 + 72 NA intron (NM_012154, intron 1 of 18) intron (NM_012154, intron 1 of 18) 38631 NM_012154 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 561_WT_peak_7114 chr8 116230995 116231373 + 72 NA Intergenic Intergenic 449055 NM_001282902 7227 Hs.657018 NM_014112 HPRD:05091 TRPS1 GC79|LGCR trichorhinophalangeal syndrome I protein-coding 561_WT_peak_3998 chr2 27309112 27309367 + 72 NA promoter-TSS (NM_006488) promoter-TSS (NM_006488) -372 NM_006488 3795 Hs.567297 NM_000221 HPRD:11774 KHK - ketohexokinase (fructokinase) protein-coding 561_WT_peak_2769 chr16 29816596 29817054 + 72 NA promoter-TSS (NM_001276275) promoter-TSS (NM_001276275) -592 NM_001276275 4150 Hs.23650 NM_002383 HPRD:02999 MAZ PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87 MYC-associated zinc finger protein (purine-binding transcription factor) protein-coding 561_WT_peak_95 chr1 21620754 21620929 + 72 NA intron (NR_038404, intron 2 of 2) intron (NR_038404, intron 2 of 2) 1058 NR_038404 100506801 Hs.663049 NR_038404 ENSG00000231105 LOC100506801 - uncharacterized LOC100506801 ncRNA 561_WT_peak_7446 chr9 131873269 131873573 + 72 NA promoter-TSS (NM_178003) promoter-TSS (NM_178003) -172 NM_178003 5524 Hs.400740 NM_021131 HPRD:02858 PPP2R4 PP2A|PR53|PTPA protein phosphatase 2A activator, regulatory subunit 4 protein-coding 561_WT_peak_5102 chr3 49044629 49044982 + 72 NA TTS (NM_177939) TTS (NM_177939) 168 NM_018031 11180 Hs.654815 NM_018031 HPRD:06912 WDR6 - WD repeat domain 6 protein-coding 561_WT_peak_7303 chr9 75747212 75747261 + 72 NA Intergenic Intergenic -19545 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 561_WT_peak_3418 chr18 3451179 3451418 + 72 NA promoter-TSS (NM_173210) promoter-TSS (NM_173210) -105 NM_170695 7050 Hs.373550 NM_003244 HPRD:04023 TGIF1 HPE4|TGIF TGFB-induced factor homeobox 1 protein-coding 561_WT_peak_2517 chr15 65823057 65823227 + 72 NA intron (NM_016395, intron 1 of 10) CpG 315 NM_016395 51495 Hs.512973 NM_016395 HPRD:11037 PTPLAD1 B-IND1|BIND1|HACD3|HSPC121 protein tyrosine phosphatase-like A domain containing 1 protein-coding 561_WT_peak_1754 chr12 68513278 68513545 + 72 NA Intergenic MIRb|SINE|MIR 40110 NM_000619 3458 Hs.856 NM_000619 HPRD:00957 IFNG IFG|IFI interferon, gamma protein-coding 561_WT_peak_6085 chr6 4018682 4018882 + 72 NA Intergenic CpG -2787 NM_003913 8899 Hs.159014 NM_003913 HPRD:09087 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 561_WT_peak_1082 chr10 89102502 89102725 + 72 NA promoter-TSS (NR_024397) promoter-TSS (NR_024397) -298 NR_024397 728190 Hs.647195 NR_024397 ENSG00000223482 NUTM2A-AS1 FAM22A-AS1 NUTM2A antisense RNA 1 ncRNA 561_WT_peak_6900 chr7 150452578 150452848 + 72 NA Intergenic (GA)n|Simple_repeat|Simple_repeat 18277 NM_018384 55340 Hs.647079 NM_018384 HPRD:16280 GIMAP5 HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD GTPase, IMAP family member 5 protein-coding 561_WT_peak_1266 chr11 45869090 45869327 + 72 NA exon (NM_021117, exon 1 of 12) exon (NM_021117, exon 1 of 12) 251 NM_021117 1408 Hs.532491 NM_021117 HPRD:07226 CRY2 HCRY2|PHLL2 cryptochrome circadian clock 2 protein-coding 561_WT_peak_7587 chrX 78514623 78514810 + 72 NA Intergenic Intergenic 88247 NM_032553 84636 Hs.326713 NM_032553 HPRD:06512 GPR174 GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 561_WT_peak_3291 chr17 60802093 60802313 + 72 NA intron (NM_001100875, intron 7 of 10) intron (NM_001100875, intron 7 of 10) 3345 NR_036146 100422923 NR_036146 MIR548W - microRNA 548w ncRNA 561_WT_peak_4 chr1 894413 894972 + 72 NA promoter-TSS (NM_015658) promoter-TSS (NM_015658) -13 NM_015658 26155 Hs.405987 NM_015658 HPRD:13166 NOC2L NET15|NET7|NIR|PPP1R112 nucleolar complex associated 2 homolog (S. cerevisiae) protein-coding 561_WT_peak_3905 chr19 56632646 56632999 + 72 NA promoter-TSS (NM_001002836) promoter-TSS (NM_001002836) -80 NM_001002836 126208 Hs.397153 NM_001002836 HPRD:14032 ZNF787 TIP20 zinc finger protein 787 protein-coding 561_WT_peak_6891 chr7 148959238 148959423 + 72 NA promoter-TSS (NM_001195220) promoter-TSS (NM_001195220) 68 NM_001195220 100289678 Hs.490512 NM_001195220 ENSG00000204946 ZNF783 - zinc finger family member 783 protein-coding 561_WT_peak_2365 chr14 102172541 102172855 + 72 NA Intergenic CpG -24076 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 561_WT_peak_2060 chr13 52027787 52028104 + 72 NA promoter-TSS (NM_001039938) promoter-TSS (NM_001039938) 464 NR_103812 100507398 Hs.594897 NR_103812 ENSG00000236778 INTS6-AS1 - INTS6 antisense RNA 1 ncRNA 561_WT_peak_7648 chrY 14775176 14775219 + 72 NA intron (NR_001545, intron 1 of 3) intron (NR_001545, intron 1 of 3) 899 NR_001545 64595 Hs.433656 NR_001545 ENSG00000233864 TTTY15 NCRNA00138 testis-specific transcript, Y-linked 15 (non-protein coding) ncRNA 561_WT_peak_126 chr1 27021450 27021665 + 72 NA promoter-TSS (NM_139135) promoter-TSS (NM_139135) -965 NM_006015 8289 Hs.468972 NM_006015 HPRD:04319 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT rich interactive domain 1A (SWI-like) protein-coding 561_WT_peak_2020 chr13 44453624 44453855 + 72 NA promoter-TSS (NM_153218) promoter-TSS (NM_153218) 87 NM_144974 160857 Hs.170849 NM_144974 HPRD:13406 CCDC122 - coiled-coil domain containing 122 protein-coding 561_WT_peak_2570 chr15 79603555 79603799 + 72 NA exon (NM_001301203, exon 1 of 3) exon (NM_001301203, exon 1 of 3) 273 NR_125394 23423 Hs.513058 NM_007364 HPRD:18200 TMED3 C15orf22|P24B|p26 transmembrane emp24 protein transport domain containing 3 protein-coding 561_WT_peak_3751 chr19 38540032 38540239 + 72 NA intron (NM_015073, intron 2 of 21) L1ME5|LINE|L1 142274 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 561_WT_peak_5413 chr4 10005412 10005639 + 72 NA intron (NM_001001290, intron 3 of 12) MIR|SINE|MIR 17589 NM_020041 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 561_WT_peak_3321 chr17 66097799 66097985 + 72 NA non-coding (NR_027418, exon 1 of 6) non-coding (NR_027418, exon 1 of 6) 196 NR_027418 100499466 Hs.591212 NR_027418 LINC00674 - long intergenic non-protein coding RNA 674 ncRNA 561_WT_peak_2256 chr14 64970550 64971040 + 72 NA promoter-TSS (NM_014950) promoter-TSS (NM_014950) -241 NM_006977 7597 Hs.654571 NM_006977 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 561_WT_peak_3507 chr18 51795745 51796137 + 72 NA promoter-TSS (NM_007195) promoter-TSS (NM_007195) 92 NM_007195 11201 Hs.438533 NM_007195 HPRD:16094 POLI RAD30B|RAD3OB polymerase (DNA directed) iota protein-coding 561_WT_peak_5386 chr4 873383 873438 + 72 NA intron (NM_005255, intron 15 of 27) L1MEc|LINE|L1 52764 NM_005255 2580 Hs.369607 NM_005255 HPRD:03631 GAK DNAJ26|DNAJC26 cyclin G associated kinase protein-coding 561_WT_peak_2468 chr15 45493043 45493515 + 72 NA promoter-TSS (NM_138356) promoter-TSS (NM_138356) 94 NM_138356 90525 Hs.310399 NM_138356 HPRD:14272 SHF - Src homology 2 domain containing F protein-coding 561_WT_peak_7220 chr9 19128454 19128480 + 72 NA promoter-TSS (NR_038064) promoter-TSS (NR_038064) -863 NM_001122 123 Hs.3416 NM_001122 HPRD:00057 PLIN2 ADFP|ADRP perilipin 2 protein-coding 561_WT_peak_4714 chr20 60877664 60877875 + 72 NA promoter-TSS (NM_001281438) promoter-TSS (NM_001281438) -183 NM_175573 11047 Hs.90107 NM_007002 HPRD:06440 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 561_WT_peak_5774 chr5 64919961 64920064 + 72 NA promoter-TSS (NM_001093756) promoter-TSS (NM_001093756) 175 NM_033228 373 Hs.792 NM_001656 HPRD:03449 TRIM23 ARD1|ARFD1|RNF46 tripartite motif containing 23 protein-coding 561_WT_peak_544 chr1 155035773 155035793 + 72 NA promoter-TSS (NM_005227) promoter-TSS (NM_005227) -430 NM_182690 1945 Hs.449913 NM_005227 HPRD:03224 EFNA4 EFL4|EPLG4|LERK4 ephrin-A4 protein-coding 561_WT_peak_7099 chr8 103597594 103597766 + 72 NA Intergenic Intergenic 33832 NM_024410 4956 Hs.159274 NM_024410 HPRD:01687 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 561_WT_peak_4688 chr20 50807988 50808305 + 72 NA exon (NM_022088, exon 1 of 5) exon (NM_022088, exon 1 of 5) 378 NM_199426 55734 Hs.473082 NM_018197 HPRD:15728 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 561_WT_peak_4906 chr22 37634602 37634773 + 72 NA intron (NM_002872, intron 2 of 6) L2a|LINE|L2 5652 NM_002872 5880 Hs.517601 NM_002872 HPRD:03628 RAC2 EN-7|Gx|HSPC022|p21-Rac2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) protein-coding 561_WT_peak_1618 chr12 14518977 14519263 + 72 NA intron (NM_001286515, intron 1 of 12) intron (NM_001286515, intron 1 of 12) 554 NM_001286515 55729 Hs.504856 NM_018179 HPRD:09811 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 561_WT_peak_939 chr10 31608193 31608369 + 72 NA promoter-TSS (NR_024284) promoter-TSS (NR_024284) 180 NM_001174095 6935 Hs.124503 NM_030751 HPRD:01798 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 561_WT_peak_639 chr1 179923517 179924386 + 72 NA promoter-TSS (NM_014810) promoter-TSS (NM_014810) 43 NM_014810 9857 Hs.413045 NM_014810 HPRD:09870 CEP350 CAP350|GM133 centrosomal protein 350kDa protein-coding 561_WT_peak_3154 chr17 37558028 37558377 + 72 NA promoter-TSS (NM_001184906) promoter-TSS (NM_001184906) -293 NM_032875 84961 Hs.462946 NM_032875 HPRD:10951 FBXL20 Fbl2|Fbl20 F-box and leucine-rich repeat protein 20 protein-coding 561_WT_peak_6294 chr6 33239269 33239510 + 72 NA promoter-TSS (NM_022551).4 promoter-TSS (NM_022551).4 353 NM_001289175 6293 Hs.480356 NM_022553 HPRD:09142 VPS52 ARE1|SAC2|SACM2L|dJ1033B10.5 vacuolar protein sorting 52 homolog (S. cerevisiae) protein-coding 561_WT_peak_6385 chr6 86388806 86389104 + 72 NA promoter-TSS (NR_003038) promoter-TSS (NR_003038) -504 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2 small nucleolar RNA host gene 5 (non-protein coding) ncRNA 561_WT_peak_414 chr1 120906235 120906495 + 72 NA non-coding (NR_027337, exon 1 of 2) non-coding (NR_027337, exon 1 of 2) 331 NR_027337 337875 Hs.742189 NR_027337 HIST2H2BA - histone cluster 2, H2ba (pseudogene) pseudo 561_WT_peak_7588 chrX 84258942 84259094 + 72 NA intron (NM_198450, intron 1 of 8) intron (NM_198450, intron 1 of 8) 120 NM_198450 139322 Hs.512181 NM_198450 APOOL CXorf33|FAM121A|UNQ8193 apolipoprotein O-like protein-coding 561_WT_peak_4120 chr2 68954182 68954406 + 72 NA Intergenic Intergenic -7619 NM_001007231 9938 Hs.531807 NM_014882 HPRD:09805 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 561_WT_peak_4506 chr2 235201330 235201584 + 72 NA Intergenic Intergenic 204236 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 561_WT_peak_5216 chr3 119013618 119013716 + 72 NA 5' UTR (NM_020754, exon 1 of 12) 5' UTR (NM_020754, exon 1 of 12) 447 NM_020754 57514 Hs.668218 NM_020754 HPRD:16697 ARHGAP31 AOS1|CDGAP Rho GTPase activating protein 31 protein-coding 561_WT_peak_2861 chr16 58663261 58663729 + 72 NA intron (NR_049763, intron 1 of 49) CpG 295 NM_206999 23019 Hs.460923 NM_016284 HPRD:11999 CNOT1 CDC39|NOT1|NOT1H CCR4-NOT transcription complex, subunit 1 protein-coding 561_WT_peak_2580 chr15 83654646 83655084 + 72 NA promoter-TSS (NM_031452) promoter-TSS (NM_031452) -90 NM_031452 83640 Hs.80624 NM_031452 HPRD:12845 FAM103A1 C15orf18|HsT19360|RAM family with sequence similarity 103, member A1 protein-coding 561_WT_peak_1247 chr11 34256832 34257019 + 72 NA intron (NM_145804, intron 1 of 16) MIRb|SINE|MIR 122630 NM_145804 25841 Hs.23361 NM_145804 HPRD:10624 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 561_WT_peak_7366 chr9 99540374 99540614 + 72 NA promoter-TSS (NM_014930) promoter-TSS (NM_014930) -166 NM_014930 22869 Hs.75264 NM_014930 HPRD:18348 ZNF510 - zinc finger protein 510 protein-coding 561_WT_peak_5384 chr4 492948 493188 + 72 NA promoter-TSS (NM_017733) promoter-TSS (NM_017733) 79 NR_110293 54872 Hs.7099 NM_017733 HPRD:07890 PIGG GPI7|LAS21|PRO4405|RLGS1930 phosphatidylinositol glycan anchor biosynthesis, class G protein-coding 561_WT_peak_4223 chr2 97524002 97524182 + 72 NA promoter-TSS (NM_016466) promoter-TSS (NM_016466) -336 NM_016466 51239 Hs.709507 NM_016466 HPRD:14614 ANKRD39 - ankyrin repeat domain 39 protein-coding 561_WT_peak_5297 chr3 156534186 156535059 + 72 NA intron (NR_038387, intron 1 of 2) CpG 229 NR_038387 730091 Hs.659905 NR_038387 ENSG00000240875 LINC00886 - long intergenic non-protein coding RNA 886 ncRNA 561_WT_peak_5415 chr4 10182651 10182800 + 72 NA Intergenic Intergenic -64152 NM_017491 9948 Hs.128548 NM_005112 HPRD:09199 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 561_WT_peak_2638 chr16 188669 188996 + 72 NA promoter-TSS (NM_001039476) promoter-TSS (NM_001039476) -135 NM_001243249 8131 Hs.19699 NM_012075 HPRD:11866 NPRL3 C16orf35|CGTHBA|HS-40|MARE|NPR3|RMD11 nitrogen permease regulator-like 3 (S. cerevisiae) protein-coding 561_WT_peak_5329 chr3 176919584 176919792 + 72 NA Intergenic Intergenic -4640 NM_024665 79718 Hs.715026 NM_024665 HPRD:15476 TBL1XR1 C21|DC42|IRA1|TBLR1 transducin (beta)-like 1 X-linked receptor 1 protein-coding 561_WT_peak_4883 chr22 31136377 31136739 + 72 NA intron (NM_030758, intron 1 of 13) LTR8|LTR|ERV1 9014 NR_036171 100422912 NR_036171 MIR3200 - microRNA 3200 ncRNA 561_WT_peak_386 chr1 113160681 113161054 + 72 NA intron (NM_138729, intron 1 of 13) intron (NM_138729, intron 1 of 13) 1173 NM_138727 54879 Hs.201921 NM_017744 HPRD:18112 ST7L FAM4B|ST7R|STLR suppression of tumorigenicity 7 like protein-coding 561_WT_peak_7328 chr9 88969072 88969368 + 72 NA 5' UTR (NM_001185074, exon 1 of 20) 5' UTR (NM_001185074, exon 1 of 20) 182 NM_024617 79670 Hs.597057 NM_024617 HPRD:11697 ZCCHC6 PAPD6|TUT7 zinc finger, CCHC domain containing 6 protein-coding 561_WT_peak_991 chr10 51827386 51827752 + 72 NA promoter-TSS (NR_038275) promoter-TSS (NR_038275) -6 NR_038275 100421577 Hs.712902 NR_038275 FAM21EP - family with sequence similarity 21, member A pseudogene pseudo 561_WT_peak_3294 chr17 61776738 61776922 + 72 NA promoter-TSS (NR_046273) promoter-TSS (NR_046273) 689 NM_030576 80774 Hs.591166 NM_030576 HPRD:14407 LIMD2 - LIM domain containing 2 protein-coding 561_WT_peak_3820 chr19 47616671 47616885 + 72 NA intron (NM_015168, intron 1 of 14) CpG-14022 231 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 561_WT_peak_5049 chr3 31796235 31796408 + 72 NA intron (NM_001174060, intron 3 of 10) L1MDb|LINE|L1 50616 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 561_WT_peak_5707 chr5 40755323 40755531 + 72 NA intron (NM_012382, intron 1 of 4) intron (NM_012382, intron 1 of 4) 645 NM_012382 23548 Hs.348915 NM_012382 HPRD:17807 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 561_WT_peak_3197 chr17 42297727 42298069 + 72 NA promoter-TSS (NM_014233) promoter-TSS (NM_014233) 352 NM_001076683 7343 Hs.89781 NM_014233 HPRD:02814 UBTF NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor, RNA polymerase I protein-coding 561_WT_peak_2225 chr14 55878350 55878766 + 72 NA promoter-TSS (NM_014924) promoter-TSS (NM_014924) 18 NM_014924 22863 Hs.414809 NM_014924 HPRD:13820 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 561_WT_peak_4789 chr21 37546097 37546361 + 72 NA intron (NM_005128, intron 2 of 36) intron (NM_005128, intron 2 of 36) 9390 NM_005128 9980 Hs.204575 NM_005128 HPRD:07271 DOPEY2 21orf5|C21orf5 dopey family member 2 protein-coding 561_WT_peak_4236 chr2 101840291 101840546 + 72 NA Intergenic LTR45B|LTR|ERV1 -28927 NM_017546 55571 Hs.744080 NM_017546 HPRD:12812 CNOT11 C2orf29 CCR4-NOT transcription complex, subunit 11 protein-coding 561_WT_peak_625 chr1 173445910 173446125 + 72 NA promoter-TSS (NM_004905) promoter-TSS (NM_004905) 277 NR_037845 100506023 Hs.731284 NR_037845 LOC100506023 - uncharacterized LOC100506023 ncRNA 561_WT_peak_1160 chr10 123687653 123687955 + 72 NA promoter-TSS (NM_007041) promoter-TSS (NM_007041) -23 NR_120495 100130887 Hs.650058 NR_120495 ENSG00000226864 ATE1-AS1 - ATE1 antisense RNA 1 (head to head) ncRNA 561_WT_peak_3654 chr19 14492234 14492651 + 72 NA intron (NM_001025160, intron 1 of 18) intron (NM_001025160, intron 1 of 18) 486 NM_001784 976 Hs.466039 NM_001784 HPRD:03130 CD97 TM7LN1 CD97 molecule protein-coding 561_WT_peak_5260 chr3 132136374 132136545 + 72 NA promoter-TSS (NM_015268) promoter-TSS (NM_015268) -94 NM_015268 23317 Hs.12707 NM_015268 HPRD:10915 DNAJC13 RME8 DnaJ (Hsp40) homolog, subfamily C, member 13 protein-coding 561_WT_peak_2806 chr16 33963731 33964233 + 72 NA Intergenic SSU-rRNA_Hsa|rRNA|rRNA -1479 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 561_WT_peak_4019 chr2 32503051 32503280 + 72 NA 5' UTR (NM_032312, exon 1 of 6) 5' UTR (NM_032312, exon 1 of 6) 207 NM_032312 84272 Hs.468099 NM_032312 YIPF4 FinGER4 Yip1 domain family, member 4 protein-coding 561_WT_peak_2862 chr16 58664070 58664274 + 71 NA promoter-TSS (NM_001265612) promoter-TSS (NM_001265612) -382 NM_016284 23019 Hs.460923 NM_016284 HPRD:11999 CNOT1 CDC39|NOT1|NOT1H CCR4-NOT transcription complex, subunit 1 protein-coding 561_WT_peak_4276 chr2 119067837 119068063 + 71 NA Intergenic Intergenic 221900 NM_016133 51141 Hs.7089 NM_016133 HPRD:16361 INSIG2 - insulin induced gene 2 protein-coding 561_WT_peak_7386 chr9 111864088 111864381 + 71 NA intron (NM_032012, intron 3 of 17) intron (NM_032012, intron 3 of 17) 17991 NM_032012 23731 Hs.308074 NM_032012 HPRD:09866 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 561_WT_peak_6242 chr6 28834324 28834859 + 71 NA Intergenic LTR12C|LTR|ERV1 -3137 NR_033379 401242 Hs.448285 NR_033379 ENSG00000225595 LOC401242 - uncharacterized LOC401242 ncRNA 561_WT_peak_3404 chr17 81153466 81153680 + 71 NA Intergenic Intergenic -21093 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 FLJ43681 - ribosomal protein L23a pseudogene pseudo 561_WT_peak_7186 chr8 145133349 145133621 + 71 NA promoter-TSS (NM_019037) promoter-TSS (NM_019037) -37 NM_019037 54512 Hs.632041 NM_019037 HPRD:16221 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 561_WT_peak_6863 chr7 138794474 138794845 + 71 NA promoter-TSS (NM_020119) promoter-TSS (NM_020119) -194 NM_024625 56829 Hs.133512 NM_020119 HPRD:09534 ZC3HAV1 ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2 zinc finger CCCH-type, antiviral 1 protein-coding 561_WT_peak_1115 chr10 101630137 101630458 + 71 NA Intergenic AluJr|SINE|Alu -56669 NR_024130 100188954 Hs.656104 NR_024130 DNMBP-AS1 NCRNA00093|bA287G8.2 DNMBP antisense RNA 1 ncRNA 561_WT_peak_7630 chrX 153626780 153627173 + 71 NA intron (NM_001256580, intron 2 of 5) CpG-28476 405 NM_001256577 6134 Hs.534404 NM_006013 HPRD:02421 RPL10 AUTSX5|DXS648|DXS648E|L10|NOV|QM ribosomal protein L10 protein-coding 561_WT_peak_1195 chr11 6633508 6633903 + 71 NA promoter-TSS (NM_006284) promoter-TSS (NM_006284) -230 NM_006284 6881 Hs.5158 NM_006284 TAF10 TAF2A|TAF2H|TAFII30 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa protein-coding 561_WT_peak_2355 chr14 98460538 98460728 + 71 NA Intergenic Intergenic -16172 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 C14orf64 - chromosome 14 open reading frame 64 ncRNA 561_WT_peak_3916 chr19 57946796 57947010 + 71 NA 5' UTR (NM_001023561, exon 1 of 3) 5' UTR (NM_001023561, exon 1 of 3) 210 NM_001023561 388567 Hs.467358 NM_001023561 HPRD:18610 ZNF749 - zinc finger protein 749 protein-coding 561_WT_peak_1641 chr12 30848872 30849118 + 71 NA promoter-TSS (NM_006390) promoter-TSS (NM_006390) -66 NM_006390 10526 Hs.505136 NM_006390 HPRD:09282 IPO8 RANBP8 importin 8 protein-coding 561_WT_peak_4709 chr20 58515491 58515788 + 71 NA promoter-TSS (NM_006242) promoter-TSS (NM_006242) 195 NM_001190827 63939 Hs.54973 NM_022106 HPRD:12758 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217, member B protein-coding 561_WT_peak_1777 chr12 76425485 76425789 + 71 NA promoter-TSS (NM_007350) promoter-TSS (NM_007350) -81 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 561_WT_peak_2579 chr15 83635548 83635718 + 71 NA Intergenic Intergenic -14157 NM_199330 9455 Hs.578443 NM_004839 HPRD:07269 HOMER2 ACPD|CPD|HOMER-2|VESL-2 homer homolog 2 (Drosophila) protein-coding 561_WT_peak_2542 chr15 72520638 72520949 + 71 NA intron (NM_001206798, intron 1 of 10) AluYc|SINE|Alu 1270 NM_001206799 5315 Hs.534770 NM_002654 HPRD:01529 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 561_WT_peak_3304 chr17 62502734 62503018 + 71 NA promoter-TSS (NM_138363) promoter-TSS (NM_138363) -282 NM_138363 90799 Hs.569713 NM_138363 HPRD:11279 CEP95 CCDC45 centrosomal protein 95kDa protein-coding 561_WT_peak_1753 chr12 68024571 68024774 + 71 NA Intergenic Charlie8|DNA|hAT-Charlie -17840 NM_006482 8445 Hs.173135 NM_003583 DYRK2 - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 protein-coding 561_WT_peak_5892 chr5 127418974 127419262 + 71 NA promoter-TSS (NM_001046) promoter-TSS (NM_001046) -352 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 561_WT_peak_76 chr1 16678571 16679030 + 71 NA 5' UTR (NM_018994, exon 1 of 10) 5' UTR (NM_018994, exon 1 of 10) 148 NM_018994 54455 Hs.522384 NM_018994 ENSG00000037637 FBXO42 Fbx42|JFK F-box protein 42 protein-coding 561_WT_peak_683 chr1 203274201 203274370 + 71 NA promoter-TSS (NM_006763) promoter-TSS (NM_006763) 168 NR_034151 730227 Hs.293928 NR_034150 ENSG00000233791 LINC01136 - long intergenic non-protein coding RNA 1136 ncRNA 561_WT_peak_5288 chr3 150481289 150481558 + 71 NA promoter-TSS (NM_005067) promoter-TSS (NM_005067) -160 NM_005067 6478 Hs.477959 NM_005067 HPRD:03737 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 561_WT_peak_5142 chr3 61235773 61236025 + 71 NA intron (NM_001166243, intron 1 of 9) intron (NM_001166243, intron 1 of 9) 1234 NM_002012 2272 Hs.655995 NM_002012 HPRD:03096 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 561_WT_peak_7096 chr8 103250968 103251249 + 71 NA promoter-TSS (NM_001172477) promoter-TSS (NM_001172477) -49 NM_001172477 50484 Hs.512592 NM_015713 HPRD:05276 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase M2 B (TP53 inducible) protein-coding 561_WT_peak_6605 chr7 21378392 21378776 + 71 NA Intergenic Intergenic -89105 NM_003112 6671 Hs.88013 NM_003112 HPRD:02764 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 561_WT_peak_5810 chr5 73875070 73875279 + 71 NA Intergenic Intergenic -60674 NM_001292004 3074 Hs.69293 NM_000521 HPRD:06043 HEXB ENC-1AS|HEL-248 hexosaminidase B (beta polypeptide) protein-coding 561_WT_peak_19 chr1 1711856 1712038 + 71 NA promoter-TSS (NM_001198994) promoter-TSS (NM_001198994) -439 NM_001198994 65220 Hs.654792 NM_023018 HPRD:16907 NADK dJ283E3.1 NAD kinase protein-coding 561_WT_peak_4667 chr20 47894768 47894943 + 71 NA promoter-TSS (NR_036659) promoter-TSS (NR_036659) -99 NM_021035 57169 Hs.371794 NM_021035 HPRD:11142 ZNFX1 - zinc finger, NFX1-type containing 1 protein-coding 561_WT_peak_6073 chr6 710790 710979 + 71 NA Intergenic CpG -17743 NM_018303 55770 Hs.484412 NM_018303 HPRD:11544 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 561_WT_peak_3334 chr17 73030362 73030732 + 71 NA intron (NR_110835, intron 2 of 7) tRNA-Arg-AGG|tRNA|tRNA 1885 NR_110835 23510 Hs.514468 NM_015353 HPRD:17176 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 561_WT_peak_4599 chr20 31127764 31128030 + 71 NA intron (NM_001256798, intron 1 of 10) intron (NM_001256798, intron 1 of 10) 30135 NR_110619 101929698 Hs.638392 NR_110619 LOC101929698 - uncharacterized LOC101929698 ncRNA 561_WT_peak_6051 chr5 180230801 180231186 + 71 NA promoter-TSS (NM_001114620) promoter-TSS (NM_001114620) -91 NM_001114620 4245 Hs.519818 NM_002406 HPRD:01189 MGAT1 GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|MGAT mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 561_WT_peak_4621 chr20 35374642 35374834 + 71 NA promoter-TSS (NR_038370) promoter-TSS (NR_038370) -197 NM_022477 57446 Hs.437338 NM_022477 HPRD:12007 NDRG3 - NDRG family member 3 protein-coding 561_WT_peak_5252 chr3 129830120 129830322 + 71 NA promoter-TSS (NR_024252) promoter-TSS (NR_024252) 55 NR_024252 729375 Hs.123633 NR_024252 FAM86HP - family with sequence similarity 86, member A pseudogene pseudo 561_WT_peak_5594 chr4 129732348 129732681 + 71 NA promoter-TSS (NM_001287443) promoter-TSS (NM_001287443) 89 NM_001287442 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 561_WT_peak_4281 chr2 120990105 120990278 + 71 NA Intergenic Intergenic -9207 NM_024121 79134 Hs.376722 NM_024121 TMEM185B FAM11B transmembrane protein 185B protein-coding 561_WT_peak_6881 chr7 148581567 148581846 + 71 NA promoter-TSS (NM_004456) promoter-TSS (NM_004456) -265 NM_001203248 2146 Hs.444082 NM_004456 HPRD:03342 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 561_WT_peak_3539 chr18 77748272 77748461 + 71 NA exon (NM_006701, exon 1 of 3) exon (NM_006701, exon 1 of 3) 166 NM_006701 10907 Hs.465498 NM_006701 HPRD:18252 TXNL4A DIB1|DIM1|HsT161|SNRNP15|TXNL4|U5-15kD thioredoxin-like 4A protein-coding 561_WT_peak_4098 chr2 64262349 64262602 + 71 NA Intergenic Intergenic -16261 NM_016516 51542 Hs.48499 NM_016516 HPRD:10302 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L vacuolar protein sorting 54 homolog (S. cerevisiae) protein-coding 561_WT_peak_1036 chr10 71168733 71168942 + 71 NA intron (NM_001057, intron 2 of 4) CpG 7837 NM_001057 6865 Hs.88372 NM_001057 HPRD:01207 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 561_WT_peak_5509 chr4 77997715 77997833 + 71 NA promoter-TSS (NM_006835) promoter-TSS (NM_006835) -649 NM_006835 10983 Hs.518827 NM_006835 HPRD:16690 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 561_WT_peak_1212 chr11 12246095 12246386 + 71 NA exon (NM_001282666, exon 11 of 19) exon (NM_001282666, exon 11 of 19) 61010 NR_106739 102466906 NR_106739 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 561_WT_peak_6922 chr7 158622530 158622810 + 71 NA promoter-TSS (NM_020728) promoter-TSS (NM_020728) -351 NM_020728 57488 Hs.490795 NM_020728 HPRD:13053 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin-like protein 2 protein-coding 561_WT_peak_7443 chr9 131591771 131592071 + 71 NA intron (NM_016390, intron 1 of 11) CpG 179 NM_016390 51490 Hs.224137 NM_016390 HPRD:12935 C9orf114 CENP-32|HSPC109 chromosome 9 open reading frame 114 protein-coding 561_WT_peak_4412 chr2 196997113 196997344 + 71 NA Intergenic LTR19C|LTR|ERV1 39108 NM_004226 9262 Hs.88297 NM_004226 HPRD:05289 STK17B DRAK2 serine/threonine kinase 17b protein-coding 561_WT_peak_3350 chr17 74188109 74188445 + 71 NA intron (NM_052916, intron 2 of 18) intron (NM_052916, intron 2 of 18) 48113 NM_052916 114804 Hs.500643 NM_052916 HPRD:15259 RNF157 - ring finger protein 157 protein-coding 561_WT_peak_3230 chr17 46914917 46915102 + 71 NA intron (NM_001261395, intron 1 of 11) AluSx3|SINE|Alu 6659 NM_001261393 10241 Hs.514920 NM_005831 HPRD:06846 CALCOCO2 NDP52 calcium binding and coiled-coil domain 2 protein-coding 561_WT_peak_841 chr10 181123 181293 + 71 NA promoter-TSS (NM_001202464) promoter-TSS (NM_001202464) -216 NM_001202464 10771 Hs.292265 NM_006624 HPRD:09830 ZMYND11 BRAM1|BS69 zinc finger, MYND-type containing 11 protein-coding 561_WT_peak_425 chr1 144078636 144078971 + 71 NA Intergenic Intergenic -68008 NM_001278267 100288142 Hs.445080 NM_001278267 ENSG00000203832 NBPF20 - neuroblastoma breakpoint family, member 20 protein-coding 561_WT_peak_3059 chr17 18086253 18086449 + 71 NA promoter-TSS (NM_017758) promoter-TSS (NM_017758) -516 NM_017758 54890 Hs.744130 NM_017758 HPRD:08621 ALKBH5 ABH5|OFOXD|OFOXD1 AlkB family member 5, RNA demethylase protein-coding 561_WT_peak_4583 chr20 24929606 24929807 + 71 NA promoter-TSS (NM_003650) promoter-TSS (NM_003650) -160 NM_003650 8530 Hs.143212 NM_003650 HPRD:04458 CST7 CMAP cystatin F (leukocystatin) protein-coding 561_WT_peak_225 chr1 46216281 46216575 + 71 NA promoter-TSS (NM_005897) promoter-TSS (NM_005897) 57 NM_001145349 3652 Hs.744252 NM_005897 HPRD:00940 IPP KLHL27 intracisternal A particle-promoted polypeptide protein-coding 561_WT_peak_2767 chr16 29757320 29757803 + 71 NA promoter-TSS (NM_175900) promoter-TSS (NM_175900) -221 NM_175900 283897 Hs.331095 NM_175900 HPRD:08183 C16orf54 - chromosome 16 open reading frame 54 protein-coding 561_WT_peak_3767 chr19 40596854 40597034 + 70 NA promoter-TSS (NM_001142578) promoter-TSS (NM_001142578) -99 NM_001142579 284323 Hs.115140 NM_001010880 HPRD:17336 ZNF780A ZNF780 zinc finger protein 780A protein-coding 561_WT_peak_4607 chr20 33292198 33292429 + 70 NA 5' UTR (NM_021202, exon 1 of 5) 5' UTR (NM_021202, exon 1 of 5) 165 NM_021202 58476 Hs.516994 NM_021202 HPRD:15546 TP53INP2 C20orf110|DOR|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 561_WT_peak_2190 chr14 50100974 50101208 + 70 NA exon (NM_018139, exon 1 of 3) exon (NM_018139, exon 1 of 3) 857 NM_018139 55172 Hs.231761 NM_018139 HPRD:12627 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein, axonemal, assembly factor 2 protein-coding 561_WT_peak_5405 chr4 6642370 6642585 + 70 NA 5' UTR (NM_033296, exon 1 of 2) 5' UTR (NM_033296, exon 1 of 2) 659 NM_033296 93621 Hs.406590 NM_033296 HPRD:17589 MRFAP1 PAM14|PGR1 Morf4 family associated protein 1 protein-coding 561_WT_peak_410 chr1 118198765 118198880 + 70 NA Intergenic MIR|SINE|MIR 50218 NM_017709 54855 Hs.356216 NM_017709 HPRD:13312 FAM46C - family with sequence similarity 46, member C protein-coding 561_WT_peak_4511 chr2 235399724 235399981 + 70 NA Intergenic Intergenic 5841 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 561_WT_peak_2634 chr15 102192377 102192689 + 70 NA promoter-TSS (NM_078474) promoter-TSS (NM_078474) 61 NM_078474 80213 Hs.288912 NM_025141 HPRD:16554 TM2D3 BLP2 TM2 domain containing 3 protein-coding 561_WT_peak_872 chr10 6707930 6708174 + 70 NA Intergenic Intergenic 47374 NR_120634 101928150 Hs.576825 NR_120634 LOC101928150 - uncharacterized LOC101928150 ncRNA 561_WT_peak_6273 chr6 31367500 31367712 + 70 NA promoter-TSS (NM_001289154).3 promoter-TSS (NM_001289154).3 45 NM_001289153 100507436 Hs.130838 NM_000247 ENSG00000204520 MICA MIC-A|PERB11.1 MHC class I polypeptide-related sequence A protein-coding 561_WT_peak_3941 chr19 59086737 59086922 + 70 NA promoter-TSS (NR_026052) promoter-TSS (NR_026052) 63 NR_026052 65996 Hs.541177 NM_023939 HPRD:14527 CENPBD1P1 - CENPBD1 pseudogene 1 pseudo 561_WT_peak_5163 chr3 88198973 88199279 + 70 NA promoter-TSS (NM_001195308) promoter-TSS (NM_001195308) -110 NM_001195308 8545 Hs.444818 NM_003663 HPRD:04529 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 561_WT_peak_5625 chr4 154387603 154387783 + 70 NA intron (NM_015196, intron 1 of 34) CpG 195 NM_015196 23240 Hs.732450 NM_015196 HPRD:13823 KIAA0922 TMEM131L KIAA0922 protein-coding 561_WT_peak_3332 chr17 72869427 72869571 + 70 NA promoter-TSS (NM_001258012) promoter-TSS (NM_001258012) -343 NR_047576 2232 Hs.69745 NM_004110 HPRD:00060 FDXR ADXR ferredoxin reductase protein-coding 561_WT_peak_5828 chr5 78809550 78809780 + 70 NA promoter-TSS (NM_004272) promoter-TSS (NM_004272) -6 NM_001277078 9456 Hs.591761 NM_004272 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer homolog 1 (Drosophila) protein-coding 561_WT_peak_6049 chr5 179285627 179285960 + 70 NA promoter-TSS (NM_016175) promoter-TSS (NM_016175) 47 NM_001017987 51149 Hs.741169 NM_016175 HPRD:17420 C5orf45 - chromosome 5 open reading frame 45 protein-coding 561_WT_peak_1857 chr12 111127438 111127630 + 70 NA promoter-TSS (NM_032369) promoter-TSS (NM_032369) 83 NM_001256413 84329 Hs.211511 NM_032369 HPRD:17507 HVCN1 HV1|VSOP hydrogen voltage-gated channel 1 protein-coding 561_WT_peak_629 chr1 173991264 173991493 + 70 NA Intergenic CpG -29168 NM_001300850 149041 Hs.30258 NM_172071 HPRD:13913 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 561_WT_peak_3337 chr17 73178826 73179143 + 70 NA 5' UTR (NM_006937, exon 1 of 4) 5' UTR (NM_006937, exon 1 of 4) 114 NM_001005849 6613 Hs.380973 NM_006937 HPRD:04332 SUMO2 HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A small ubiquitin-like modifier 2 protein-coding 561_WT_peak_1726 chr12 56546088 56546386 + 70 NA promoter-TSS (NM_002475) promoter-TSS (NM_002475) 33 NM_001199629 140465 Hs.632731 NM_002475 HPRD:14721 MYL6B MLC1SA myosin, light chain 6B, alkali, smooth muscle and non-muscle protein-coding 561_WT_peak_5082 chr3 44903118 44903318 + 70 NA promoter-TSS (NM_144638) promoter-TSS (NM_144638) -162 NR_030290 693149 NR_030290 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 561_WT_peak_3165 chr17 38210709 38210891 + 70 NA promoter-TSS (NM_001079518) promoter-TSS (NM_001079518) 89 NR_052017 9862 Hs.462983 NM_014815 HPRD:06107 MED24 ARC100|CRSP100|CRSP4|DRIP100|THRAP4|TRAP100 mediator complex subunit 24 protein-coding 561_WT_peak_743 chr1 224301820 224302125 + 70 NA exon (NM_001136115, exon 1 of 4) exon (NM_001136115, exon 1 of 4) 183 NM_015176 23219 Hs.64691 NM_015176 HPRD:12367 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 561_WT_peak_1350 chr11 65189627 65189821 + 70 NA promoter-TSS (NR_028272) promoter-TSS (NR_028272) -545 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_985 chr10 46222410 46222580 + 70 NA promoter-TSS (NM_001169107) promoter-TSS (NM_001169107) -153 NM_001169106 253725 Hs.365286 NM_015262 HPRD:11094 FAM21C FAM21A|VPEF family with sequence similarity 21, member C protein-coding 561_WT_peak_3912 chr19 57791901 57792244 + 70 NA 5' UTR (NM_006635, exon 1 of 3) 5' UTR (NM_006635, exon 1 of 3) 219 NM_006635 10794 Hs.99971 NM_006635 HPRD:06885 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 561_WT_peak_6603 chr7 19748388 19748774 + 70 NA promoter-TSS (NM_001002926) promoter-TSS (NM_001002926) 79 NM_001002926 221830 Hs.353035 NM_001002926 HPRD:16311 TWISTNB - TWIST neighbor protein-coding 561_WT_peak_5580 chr4 114276821 114277038 + 70 NA exon (NM_001148, exon 38 of 46) exon (NM_001148, exon 38 of 46) 203491 NR_107049 102465878 NR_107049 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 561_WT_peak_2002 chr13 41350962 41351142 + 70 NA Intergenic Intergenic -5705 NM_005830 10240 Hs.596607 NM_005830 HPRD:10098 MRPS31 IMOGN38|MRP-S31|S31mt mitochondrial ribosomal protein S31 protein-coding 561_WT_peak_2151 chr14 24740727 24740998 + 70 NA promoter-TSS (NM_182836) promoter-TSS (NM_182836) -29 NM_004581 5875 Hs.377992 NM_004581 HPRD:03547 RABGGTA PTAR3 Rab geranylgeranyltransferase, alpha subunit protein-coding 561_WT_peak_1842 chr12 108956257 108956593 + 70 NA exon (NM_001301140, exon 1 of 6) exon (NM_001301140, exon 1 of 6) 1186 NM_001301141 23479 Hs.615131 NM_014301 HPRD:14828 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 561_WT_peak_3150 chr17 37025486 37025774 + 70 NA promoter-TSS (NM_006148) promoter-TSS (NM_006148) -482 NR_073384 3927 Hs.741156 NM_006148 HPRD:04229 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 561_WT_peak_2095 chr13 110790541 110790734 + 70 NA Intergenic CpG 168859 NM_001845 1282 Hs.17441 NM_001845 HPRD:00359 COL4A1 HANAC|ICH|POREN1|arresten collagen, type IV, alpha 1 protein-coding 561_WT_peak_5104 chr3 49059323 49059598 + 70 NA promoter-TSS (NM_018114) promoter-TSS (NM_018114) 386 NM_199070 25915 Hs.31387 NM_199069 NDUFAF3 2P1|C3orf60|E3-3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 protein-coding 561_WT_peak_1190 chr11 3875871 3876063 + 70 NA promoter-TSS (NM_003156) promoter-TSS (NM_003156) -966 NM_001277962 6786 Hs.501735 NM_003156 HPRD:05803 STIM1 D11S4896E|GOK|IMD10|STRMK|TAM|TAM1 stromal interaction molecule 1 protein-coding 561_WT_peak_3163 chr17 38024239 38024514 + 70 NA promoter-TSS (NM_199321) promoter-TSS (NM_199321) -79 NM_198844 124626 Hs.367245 NM_198844 HPRD:18365 ZPBP2 ZPBPL zona pellucida binding protein 2 protein-coding 561_WT_peak_7227 chr9 21031091 21031157 + 70 NA intron (NM_001010915, intron 1 of 6) MER5A|DNA|hAT-Charlie 511 NM_001010915 401494 Hs.716678 NM_001010915 PTPLAD2 HACD4 protein tyrosine phosphatase-like A domain containing 2 protein-coding 561_WT_peak_5461 chr4 48782603 48782792 + 70 NA promoter-TSS (NM_015030) promoter-TSS (NM_015030) -381 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL KIAA0826 FRY-like protein-coding 561_WT_peak_2188 chr14 50065556 50065880 + 70 NA non-coding (NR_037793, exon 1 of 5) non-coding (NR_037793, exon 1 of 5) 303 NR_037792 122769 Hs.451090 NM_152329 HPRD:15164 LRR1 4-1BBLRR|LRR-1|PPIL5 leucine rich repeat protein 1 protein-coding 561_WT_peak_4343 chr2 158755703 158755879 + 70 NA Intergenic Intergenic -23417 NM_001111067 90 Hs.470316 NM_001105 HPRD:00021 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor, type I protein-coding 561_WT_peak_5819 chr5 75838813 75838973 + 70 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) -4341 NM_001285460 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 561_WT_peak_1086 chr10 89623350 89623543 + 70 NA promoter-TSS (NM_001126049) promoter-TSS (NM_001126049) 251 NM_000314 5728 Hs.500466 NM_000314 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 phosphatase and tensin homolog protein-coding 561_WT_peak_6579 chr7 5436619 5437144 + 70 NA intron (NM_001080495, intron 2 of 29) intron (NM_001080495, intron 2 of 29) 26296 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 561_WT_peak_5612 chr4 147096937 147097123 + 70 NA intron (NM_007080, intron 1 of 3) CpG 195 NM_007080 11157 Hs.190520 NM_007080 HPRD:06286 LSM6 YDR378C LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 561_WT_peak_5207 chr3 112709613 112710051 + 70 NA promoter-TSS (NM_014170) promoter-TSS (NM_014170) 32 NM_138485 29083 Hs.127496 NM_014170 HPRD:13700 GTPBP8 HSPC135 GTP-binding protein 8 (putative) protein-coding 561_WT_peak_1748 chr12 62860463 62860735 + 70 NA promoter-TSS (NM_015026) promoter-TSS (NM_015026) 2 NM_001278469 23041 Hs.389378 NM_015026 HPRD:11123 MON2 - MON2 homolog (S. cerevisiae) protein-coding 561_WT_peak_6353 chr6 53516215 53516319 + 70 NA 3' UTR (NM_001003760, exon 3 of 3) 3' UTR (NM_001003760, exon 3 of 3) 14239 NM_001003760 401265 Hs.131064 NM_001003760 HPRD:13923 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch-like family member 31 protein-coding 561_WT_peak_2358 chr14 99947785 99948043 + 70 NA promoter-TSS (NM_199123) promoter-TSS (NM_199123) 175 NM_001099402 8812 Hs.510409 NM_003858 CCNK CPR4 cyclin K protein-coding 561_WT_peak_28 chr1 2509791 2510110 + 70 NA intron (NR_121638, intron 1 of 3) intron (NR_121638, intron 1 of 3) -7949 NR_036637 127281 Hs.462033 NM_152371 HPRD:14513 FAM213B C1orf93 family with sequence similarity 213, member B protein-coding 561_WT_peak_5309 chr3 161028651 161028848 + 70 NA Intergenic L2b|LINE|L2 61122 NM_001040100 165679 Hs.369104 NM_145035 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase, small subunit B protein-coding 561_WT_peak_4013 chr2 30369095 30369329 + 70 NA promoter-TSS (NM_001127400) promoter-TSS (NM_001127400) -538 NM_001127400 51646 Hs.515890 NM_016061 HPRD:18312 YPEL5 - yippee-like 5 (Drosophila) protein-coding 561_WT_peak_4074 chr2 55460083 55460340 + 70 NA promoter-TSS (NM_152385) promoter-TSS (NM_152385) 397 NM_001177413 6233 Hs.311640 NM_002954 HPRD:01878 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 561_WT_peak_4487 chr2 231454317 231454545 + 70 NA Intergenic Intergenic 110813 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LOC151475 - uncharacterized LOC151475 ncRNA 561_WT_peak_4095 chr2 64068529 64068761 + 70 NA promoter-TSS (NM_006759) promoter-TSS (NM_006759) -369 NM_006759 7360 Hs.516217 NM_006759 HPRD:08934 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 561_WT_peak_3106 chr17 28705390 28705561 + 70 NA promoter-TSS (NM_001304) promoter-TSS (NM_001304) -467 NM_001304 1362 Hs.446079 NM_001304 HPRD:04375 CPD GP180 carboxypeptidase D protein-coding 561_WT_peak_7492 chrX 1511330 1511643 + 70 NA promoter-TSS (NM_001636) promoter-TSS (NM_001636) -447 NM_001636 293 Hs.350927 NM_001636 SLC25A6 2|3|AAC3|ANT|ANT 2|ANT 3|ANT3|ANT3Y solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 protein-coding 561_WT_peak_1218 chr11 14541769 14542199 + 70 NA promoter-TSS (NM_001143937) promoter-TSS (NM_001143937) 7 NM_002786 5682 Hs.102798 NM_002786 HPRD:04170 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome (prosome, macropain) subunit, alpha type, 1 protein-coding 561_WT_peak_3134 chr17 34842561 34842731 + 70 NA intron (NR_104011, intron 1 of 3) CpG 175 NR_104009 9326 Hs.2210 NM_004773 HPRD:05139 ZNHIT3 TRIP3 zinc finger, HIT-type containing 3 protein-coding 561_WT_peak_6148 chr6 26184122 26184310 + 70 NA exon (NM_003523, exon 1 of 1) exon (NM_003523, exon 1 of 1) 192 NM_003523 8344 Hs.534369 NM_003523 HPRD:11901 HIST1H2BE H2B.h|H2B/h|H2BFH|dJ221C16.8 histone cluster 1, H2be protein-coding 561_WT_peak_1931 chr12 133405435 133405647 + 70 NA promoter-TSS (NM_001172557) promoter-TSS (NM_001172557) -115 NM_001172557 2802 Hs.507333 NM_005895 HPRD:03990 GOLGA3 GCP170|MEA-2 golgin A3 protein-coding 561_WT_peak_4208 chr2 96657314 96657758 + 70 NA Intergenic CpG -18763 NR_003698 729234 Hs.720108 NR_003698 ENSG00000231584 FAHD2CP - fumarylacetoacetate hydrolase domain containing 2C, pseudogene pseudo 561_WT_peak_5705 chr5 40486939 40487263 + 70 NA Intergenic Intergenic -192931 NM_000958 5734 Hs.199248 NM_000958 HPRD:03350 PTGER4 EP4|EP4R prostaglandin E receptor 4 (subtype EP4) protein-coding 561_WT_peak_2088 chr13 100009441 100009860 + 70 NA intron (NR_026644, intron 7 of 8) intron (NR_026644, intron 7 of 8) 1265 NR_030353 693208 NR_030353 MIR623 MIRN623|hsa-mir-623 microRNA 623 ncRNA 561_WT_peak_2376 chr14 102553138 102553330 + 70 NA intron (NM_001017963, intron 2 of 11) CpG 278 NM_005348 3320 Hs.525600 NM_005348 HPRD:00777 HSP90AA1 EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90kDa alpha (cytosolic), class A member 1 protein-coding 561_WT_peak_2562 chr15 76603439 76603903 + 70 NA intron (NM_000126, intron 1 of 11) CpG 139 NM_000126 2108 Hs.39925 NM_000126 HPRD:01979 ETFA EMA|GA2|MADD electron-transfer-flavoprotein, alpha polypeptide protein-coding 561_WT_peak_3227 chr17 46518724 46518964 + 70 NA Intergenic Intergenic -3351 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 561_WT_peak_17 chr1 1624197 1624426 + 70 NA promoter-TSS (NM_001110781) promoter-TSS (NM_001110781) -68 NM_001110781 728661 Hs.655255 NM_001110781 ENSG00000189339 SLC35E2B SLC35E2 solute carrier family 35, member E2B protein-coding 561_WT_peak_6317 chr6 41041035 41041272 + 70 NA promoter-TSS (NM_145063) promoter-TSS (NM_145063) 446 NM_021705 4800 Hs.10441 NM_002505 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y, alpha protein-coding 561_WT_peak_6479 chr6 134757631 134757854 + 70 NA Intergenic Intergenic -1112 NR_038216 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 561_WT_peak_5233 chr3 122920224 122920476 + 70 NA promoter-TSS (NM_012430) promoter-TSS (NM_012430) -424 NM_012430 26984 Hs.477361 NM_012430 SEC22A SEC22L2 SEC22 vesicle trafficking protein homolog A (S. cerevisiae) protein-coding 561_WT_peak_946 chr10 32735164 32735391 + 70 NA promoter-TSS (NR_120660) promoter-TSS (NR_120660) 267 NR_109826 79741 Hs.585464 NM_024688 HPRD:10698 CCDC7 BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 561_WT_peak_2855 chr16 57496503 57496714 + 70 NA promoter-TSS (NM_032940) promoter-TSS (NM_032940) 57 NM_032940 5432 Hs.79402 NM_002694 HPRD:15945 POLR2C RPB3|RPB31|hRPB33|hsRPB3 polymerase (RNA) II (DNA directed) polypeptide C, 33kDa protein-coding 561_WT_peak_615 chr1 169862930 169863100 + 70 NA promoter-TSS (NM_181093) promoter-TSS (NM_181093) 85 NM_181093 57147 Hs.435560 NM_020423 HPRD:07459 SCYL3 PACE-1|PACE1 SCY1-like 3 (S. cerevisiae) protein-coding 561_WT_peak_3113 chr17 30411017 30411234 + 70 NA Intergenic Intergenic 43770 NR_033412 6458 Hs.672460 NR_033412 SH3GL1P1 CNSA-P1|SH3GLP1 SH3-domain GRB2-like 1 pseudogene 1 pseudo 561_WT_peak_4543 chr20 2451680 2451801 + 70 NA promoter-TSS (NM_198216) promoter-TSS (NM_198216) -241 NM_198216 6628 Hs.83753 NM_003091 HPRD:01655 SNRPB COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B small nuclear ribonucleoprotein polypeptides B and B1 protein-coding 561_WT_peak_4107 chr2 65283756 65284078 + 70 NA intron (NM_015147, intron 1 of 6) CpG 422 NM_015147 23177 Hs.709257 NM_015147 HPRD:13808 CEP68 KIAA0582 centrosomal protein 68kDa protein-coding 561_WT_peak_3052 chr17 16342413 16342597 + 70 NA promoter-TSS (NR_002744) promoter-TSS (NR_002744) 204 NR_027169 125144 Hs.368934 NM_152350 HPRD:17549 LRRC75A-AS1 C17orf45|C17orf76-AS1|FAM211A-AS1|NCRNA00188|TSAP19 LRRC75A antisense RNA 1 ncRNA 561_WT_peak_5002 chr3 11667698 11667869 + 70 NA intron (NM_014667, intron 2 of 5) intron (NM_014667, intron 2 of 5) 17668 NM_001128219 9686 Hs.740389 NM_014667 HPRD:11672 VGLL4 VGL-4 vestigial-like family member 4 protein-coding 561_WT_peak_4754 chr21 26935739 26936124 + 70 NA intron (NR_001458, intron 1 of 2) intron (NR_001458, intron 1 of 2) 1474 NR_001458 114614 Hs.697120 NR_001458 ENSG00000234883 MIR155HG BIC|MIRHG2|NCRNA00172 MIR155 host gene (non-protein coding) ncRNA 561_WT_peak_7306 chr9 75767947 75768122 + 70 NA intron (NM_000700, intron 1 of 12) intron (NM_000700, intron 1 of 12) 1253 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 561_WT_peak_2144 chr14 24630461 24630674 + 70 NA TTS (NM_017999) TTS (NM_017999) 145 NM_006084 10379 Hs.1706 NM_006084 HPRD:00960 IRF9 IRF-9|ISGF3|ISGF3G|p48 interferon regulatory factor 9 protein-coding 561_WT_peak_6355 chr6 56954971 56955410 + 70 NA intron (NM_001257273, intron 1 of 3) CpG 362 NM_015555 26036 Hs.485628 NM_015555 HPRD:10332 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 561_WT_peak_1952 chr13 23949050 23949283 + 70 NA intron (NM_014363, intron 3 of 9) CpG 516 NM_001278055 26278 Hs.159492 NM_014363 HPRD:05135 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 561_WT_peak_7360 chr9 98585111 98585342 + 70 NA intron (NR_023390, intron 2 of 2) intron (NR_023390, intron 2 of 2) -52674 NM_001010895 375748 Hs.432364 NM_020207 HPRD:17362 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 excision repair cross-complementation group 6-like 2 protein-coding 561_WT_peak_5238 chr3 125803117 125803291 + 70 NA promoter-TSS (NM_017836) promoter-TSS (NM_017836) -70 NM_001008486 54946 Hs.573007 NM_017836 HPRD:11580 SLC41A3 SLC41A1-L2 solute carrier family 41, member 3 protein-coding 561_WT_peak_1221 chr11 14913031 14913510 + 70 NA intron (NM_024514, intron 1 of 4) CpG 481 NM_024514 120227 Hs.371427 NM_024514 HPRD:10569 CYP2R1 - cytochrome P450, family 2, subfamily R, polypeptide 1 protein-coding 561_WT_peak_1455 chr11 94276862 94277484 + 70 NA 5' UTR (NM_002033, exon 1 of 1) 5' UTR (NM_002033, exon 1 of 1) 156 NM_002033 2526 Hs.390420 NM_002033 HPRD:00083 FUT4 CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) protein-coding 561_WT_peak_977 chr10 43857934 43858125 + 69 NA Intergenic CpG -9063 NM_001184963 53828 Hs.130497 NM_173160 HPRD:07019 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 561_WT_peak_5256 chr3 130612101 130612930 + 69 NA promoter-TSS (NM_014382) promoter-TSS (NM_014382) -320 NM_001199179 27032 Hs.584884 NM_014382 HPRD:05089 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase, Ca++ transporting, type 2C, member 1 protein-coding 561_WT_peak_6593 chr7 10980159 10980345 + 69 NA promoter-TSS (NM_002489) promoter-TSS (NM_002489) -439 NM_002489 4697 Hs.50098 NM_002489 HPRD:04831 NDUFA4 CI-9k|CI-MLRQ|MLRQ NDUFA4, mitochondrial complex associated protein-coding 561_WT_peak_1614 chr12 12940035 12940266 + 69 NA exon (NM_001130415, exon 2 of 2) exon (NM_001130415, exon 2 of 2) 1609 NM_030817 81575 Hs.23388 NM_030817 HPRD:13153 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 561_WT_peak_4386 chr2 182756922 182757109 + 69 NA intron (NR_109843, intron 1 of 17) CpG 572 NM_001287505 6744 Hs.196983 NM_006751 HPRD:00353 SSFA2 CS-1|CS1|KRAP|SPAG13 sperm specific antigen 2 protein-coding 561_WT_peak_3293 chr17 61775334 61775508 + 69 NA 3' UTR (NM_030576, exon 5 of 5) 3' UTR (NM_030576, exon 5 of 5) 2098 NM_030576 80774 Hs.591166 NM_030576 HPRD:14407 LIMD2 - LIM domain containing 2 protein-coding 561_WT_peak_2505 chr15 60884542 60884714 + 69 NA promoter-TSS (NM_134262) promoter-TSS (NM_134262) 79 NM_134262 6095 Hs.560343 NM_002943 HPRD:02896 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR-related orphan receptor A protein-coding 561_WT_peak_6457 chr6 119400022 119400209 + 69 NA promoter-TSS (NM_024581) promoter-TSS (NM_024581) -303 NM_024581 79632 Hs.443789 NM_024581 HPRD:09856 FAM184A C6orf60 family with sequence similarity 184, member A protein-coding 561_WT_peak_3512 chr18 56355186 56355446 + 69 NA intron (NM_006785, intron 2 of 16) intron (NM_006785, intron 2 of 16) -16211 NM_001289967 101927322 Hs.644875 NM_001289967 LOC101927322 - uncharacterized LOC101927322 protein-coding 561_WT_peak_3209 chr17 44270550 44270785 + 69 NA promoter-TSS (NR_034172) promoter-TSS (NR_034172) -272 NR_034172 644246 Hs.644600 NR_034172 ENSG00000214401 KANSL1-AS1 - KANSL1 antisense RNA 1 ncRNA 561_WT_peak_3558 chr19 1269424 1269950 + 69 NA intron (NM_001300829, intron 1 of 5) CpG-12220 420 NR_023312 1153 Hs.618145 NM_001280 HPRD:08375 CIRBP CIRP cold inducible RNA binding protein protein-coding 561_WT_peak_313 chr1 89761007 89761224 + 69 NA Intergenic Intergenic -5070 NR_077244 729930 Hs.745054 NR_077244 LOC729930 - chromosome 11 open reading frame 74 pseudogene pseudo 561_WT_peak_2635 chr15 102192807 102193018 + 69 NA promoter-TSS (NM_078474) promoter-TSS (NM_078474) -318 NM_025141 80213 Hs.288912 NM_025141 HPRD:16554 TM2D3 BLP2 TM2 domain containing 3 protein-coding 561_WT_peak_3242 chr17 47865780 47865945 + 69 NA promoter-TSS (NM_001199156) promoter-TSS (NM_001199156) -119 NM_001199155 11143 Hs.21907 NM_007067 HPRD:07135 KAT7 HBO1|HBOA|MYST2|ZC2HC7 K(lysine) acetyltransferase 7 protein-coding 561_WT_peak_6555 chr6 170123542 170123738 + 69 NA intron (NM_018288, intron 1 of 11) intron (NM_018288, intron 1 of 11) 466 NM_018288 55274 Hs.435933 NM_018288 HPRD:11428 PHF10 BAF45A|XAP135 PHD finger protein 10 protein-coding 561_WT_peak_6793 chr7 102389762 102389950 + 69 NA exon (NM_001145268, exon 1 of 8) exon (NM_001145268, exon 1 of 8) 457 NM_001145268 222234 Hs.202543 NM_147194 FAM185A - family with sequence similarity 185, member A protein-coding 561_WT_peak_6941 chr8 22298203 22298614 + 69 NA promoter-TSS (NM_001243974) promoter-TSS (NM_001243974) -75 NM_005605 5533 Hs.731683 NM_005605 HPRD:00236 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3, catalytic subunit, gamma isozyme protein-coding 561_WT_peak_6878 chr7 143398331 143398774 + 69 NA intron (NM_173678, intron 1 of 6) intron (NM_173678, intron 1 of 6) -14387 NM_001130026 285966 Hs.743565 NM_173678 HPRD:07117 FAM115C FAM139A family with sequence similarity 115, member C protein-coding 561_WT_peak_13 chr1 1334473 1334730 + 69 NA promoter-TSS (NR_015434) promoter-TSS (NR_015434) 117 NM_001039577 81669 Hs.515704 NM_030937 HPRD:10815 CCNL2 ANIA-6B|CCNM|CCNS|HCLA-ISO|HLA-ISO|PCEE|SB138 cyclin L2 protein-coding 561_WT_peak_4958 chr22 43583579 43583958 + 69 NA promoter-TSS (NM_015140) promoter-TSS (NM_015140) -631 NM_015140 23170 Hs.517670 NM_015140 HPRD:13782 TTLL12 dJ526I14.2 tubulin tyrosine ligase-like family, member 12 protein-coding 561_WT_peak_5195 chr3 107940942 107941144 + 69 NA exon (NM_018010, exon 1 of 11) exon (NM_018010, exon 1 of 11) 374 NM_018010 55081 Hs.412196 NM_018010 HPRD:09430 IFT57 ESRRBL1|HIPPI|MHS4R2 intraflagellar transport 57 protein-coding 561_WT_peak_1117 chr10 102046185 102046387 + 69 NA promoter-TSS (NM_001282438) promoter-TSS (NM_001282438) -151 NM_001282438 282991 Hs.34906 NM_173809 BLOC1S2 BLOS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex-1, subunit 2 protein-coding 561_WT_peak_7384 chr9 110045582 110045753 + 69 NA promoter-TSS (NM_001244724) promoter-TSS (NM_001244724) 150 NM_002874 5887 Hs.521640 NM_002874 HPRD:06772 RAD23B HHR23B|HR23B|P58 RAD23 homolog B (S. cerevisiae) protein-coding 561_WT_peak_2880 chr16 68877404 68877721 + 69 NA promoter-TSS (NM_024562) promoter-TSS (NM_024562) 53 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog (Drosophila) protein-coding 561_WT_peak_2653 chr16 2041836 2042062 + 69 NA intron (NM_004209, intron 1 of 3) CpG 2003 NM_004209 9143 Hs.435277 NM_004209 HPRD:06801 SYNGR3 - synaptogyrin 3 protein-coding 561_WT_peak_4103 chr2 64553271 64553456 + 69 NA Intergenic Intergenic 97828 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 561_WT_peak_5420 chr4 15004438 15004689 + 69 NA promoter-TSS (NR_038857) promoter-TSS (NR_038857) 265 NM_001177381 132864 Hs.656937 NM_182485 HPRD:16744 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 561_WT_peak_708 chr1 207224137 207224471 + 69 NA exon (NM_018566, exon 1 of 2) exon (NM_018566, exon 1 of 2) 118 NM_018566 55432 Hs.567533 NM_018566 HPRD:10312 YOD1 DUBA8|OTUD2|PRO0907 YOD1 deubiquitinase protein-coding 561_WT_peak_505 chr1 150039449 150039834 + 69 NA promoter-TSS (NM_001279355) promoter-TSS (NM_001279355) -84 NM_001279355 11311 Hs.443750 NM_007259 HPRD:10301 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog (S. cerevisiae) protein-coding 561_WT_peak_1443 chr11 85779707 85780111 + 69 NA 5' UTR (NM_001206946, exon 1 of 20) 5' UTR (NM_001206946, exon 1 of 20) 230 NM_001008660 8301 Hs.163893 NM_007166 HPRD:04320 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 561_WT_peak_1251 chr11 35099588 35099842 + 69 NA Intergenic Intergenic 59864 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 561_WT_peak_6076 chr6 2765681 2766125 + 69 NA exon (NM_020135, exon 1 of 7) exon (NM_020135, exon 1 of 7) 237 NM_130395 56897 Hs.236828 NM_020135 HPRD:10494 WRNIP1 WHIP|bA420G6.2 Werner helicase interacting protein 1 protein-coding 561_WT_peak_6000 chr5 157170529 157170735 + 69 NA promoter-TSS (NM_173491) promoter-TSS (NM_173491) -123 NM_173491 134353 Hs.631954 NM_173491 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 561_WT_peak_5454 chr4 40057815 40058034 + 69 NA promoter-TSS (NM_018177) promoter-TSS (NM_018177) -600 NM_018177 55728 Hs.391463 NM_018177 HPRD:11382 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 561_WT_peak_7324 chr9 88357307 88357454 + 69 NA promoter-TSS (NM_001286717) promoter-TSS (NM_001286717) -436 NM_015239 23287 Hs.719980 NM_015239 HPRD:08442 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 561_WT_peak_919 chr10 26719798 26719846 + 69 NA Intergenic L2|LINE|L2 -7444 NM_019043 54518 Hs.310421 NM_019043 HPRD:16420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein protein-coding 561_WT_peak_4416 chr2 197076135 197076461 + 69 NA intron (NM_020760, intron 28 of 28) intron (NM_020760, intron 28 of 28) -39962 NM_004226 9262 Hs.88297 NM_004226 HPRD:05289 STK17B DRAK2 serine/threonine kinase 17b protein-coding 561_WT_peak_5838 chr5 81147717 81147966 + 69 NA Intergenic Intergenic -100769 NM_001256736 23635 Hs.102735 NM_012446 SSBP2 HSPC116|SOSS-B2 single-stranded DNA binding protein 2 protein-coding 561_WT_peak_3179 chr17 40169030 40169437 + 69 NA promoter-TSS (NM_001144766) promoter-TSS (NM_001144766) -50 NM_001144766 7266 Hs.500156 NM_003315 ENSG00000168259 DNAJC7 DJ11|DJC7|TPR2|TTC2 DnaJ (Hsp40) homolog, subfamily C, member 7 protein-coding 561_WT_peak_1249 chr11 35035387 35035485 + 69 NA Intergenic Intergenic 72052 NR_039836 100616437 NR_039836 MIR1343 - microRNA 1343 ncRNA 561_WT_peak_3777 chr19 42364238 42364408 + 69 NA 5' UTR (NM_001022, exon 1 of 6) 5' UTR (NM_001022, exon 1 of 6) 335 NM_001022 6223 Hs.438429 NM_001022 HPRD:04591 RPS19 DBA|DBA1|S19 ribosomal protein S19 protein-coding 561_WT_peak_4369 chr2 174829084 174829338 + 69 NA promoter-TSS (NM_001017371) promoter-TSS (NM_001017371) -264 NM_001017371 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 561_WT_peak_5515 chr4 81105295 81105577 + 69 NA promoter-TSS (NM_020226) promoter-TSS (NM_020226) -988 NM_020226 56978 Hs.373642 NM_020226 HPRD:17904 PRDM8 PFM5 PR domain containing 8 protein-coding 561_WT_peak_3549 chr19 610786 611131 + 69 NA intron (NM_001194, intron 5 of 7) MLT1C|LTR|ERVL-MaLR 21065 NM_001194 610 Hs.124161 NM_001194 HPRD:07213 HCN2 BCNG-2|BCNG2|HAC-1 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 protein-coding 561_WT_peak_6598 chr7 16685837 16686035 + 69 NA promoter-TSS (NM_020319) promoter-TSS (NM_020319) 177 NM_001159767 28969 Hs.487635 NM_014038 HPRD:16571 BZW2 MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 561_WT_peak_696 chr1 205254917 205255175 + 69 NA Intergenic AluJb|SINE|Alu 29717 NM_001297613 9911 Hs.6360 NM_014858 HPRD:11040 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 561_WT_peak_407 chr1 117307186 117307356 + 69 NA intron (NM_001767, intron 4 of 4) intron (NM_001767, intron 4 of 4) 10185 NM_001767 914 Hs.523500 NM_001767 HPRD:01750 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 561_WT_peak_6477 chr6 134557305 134557500 + 69 NA intron (NM_001143676, intron 2 of 13) intron (NM_001143676, intron 2 of 13) -58392 NM_001143677 6446 Hs.510078 NM_005627 HPRD:04264 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 561_WT_peak_660 chr1 186708264 186708408 + 69 NA Intergenic MIR|SINE|MIR 58550 NR_125801 103752588 Hs.441636 NR_125801 PACERR PACER|PTGS2-AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 561_WT_peak_6667 chr7 45151249 45151632 + 69 NA promoter-TSS (NM_199122) promoter-TSS (NM_199122) -94 NM_004749 9238 Hs.231411 NM_004749 HPRD:10263 TBRG4 CPR2|FASTKD4 transforming growth factor beta regulator 4 protein-coding 561_WT_peak_6092 chr6 7313498 7313728 + 69 NA promoter-TSS (NM_001292008) promoter-TSS (NM_001292008) -66 NM_003144 6745 Hs.114033 NM_003144 HPRD:02924 SSR1 TRAPA signal sequence receptor, alpha protein-coding 561_WT_peak_2450 chr15 43425785 43426001 + 69 NA 5' UTR (NM_024956, exon 1 of 14) 5' UTR (NM_024956, exon 1 of 14) 171 NM_024956 80021 Hs.511175 NM_024956 HPRD:08669 TMEM62 - transmembrane protein 62 protein-coding 561_WT_peak_3415 chr18 2644695 2644871 + 69 NA Intergenic Intergenic 10611 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox homolog 3 pseudogene 2 pseudo 561_WT_peak_4429 chr2 200820556 200820739 + 69 NA promoter-TSS (NR_109905) promoter-TSS (NR_109905) -188 NR_004862 129450 Hs.204619 NM_152382 HPRD:08232 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 561_WT_peak_2533 chr15 68346671 68346865 + 69 NA intron (NM_016166, intron 1 of 13) CpG 196 NM_016166 8554 Hs.162458 NM_016166 HPRD:16029 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT, 1 protein-coding 561_WT_peak_1017 chr10 65281311 65281516 + 69 NA intron (NM_001001330, intron 1 of 7) CpG 290 NM_001001330 221035 Hs.499833 NM_001001330 HPRD:16582 REEP3 C10orf74 receptor accessory protein 3 protein-coding 561_WT_peak_2611 chr15 91498560 91498733 + 69 NA intron (NM_001017919, intron 1 of 7) intron (NM_001017919, intron 1 of 7) 540 NM_033544 91433 Hs.655895 NM_033544 HPRD:18706 RCCD1 - RCC1 domain containing 1 protein-coding 561_WT_peak_2458 chr15 44955484 44955763 + 69 NA exon (NM_001160227, exon 1 of 38) exon (NM_001160227, exon 1 of 38) 253 NM_001160227 80208 Hs.656271 NM_025137 HPRD:07963 SPG11 KIAA1840 spastic paraplegia 11 (autosomal recessive) protein-coding 561_WT_peak_2958 chr16 89788478 89788682 + 69 NA intron (NR_110129, intron 1 of 10) CpG 628 NM_001113525 92822 Hs.290154 NM_152287 HPRD:12235 ZNF276 CENP-Z|CENPZ|ZADT|ZFP276|ZNF477 zinc finger protein 276 protein-coding 561_WT_peak_3785 chr19 44066917 44067187 + 69 NA intron (NM_006297, intron 2 of 16) MIR|SINE|MIR 12678 NM_006297 7515 Hs.98493 NM_006297 HPRD:01909 XRCC1 RCC X-ray repair complementing defective repair in Chinese hamster cells 1 protein-coding 561_WT_peak_2997 chr17 4981366 4981553 + 69 NA promoter-TSS (NM_153018) promoter-TSS (NM_153018) -295 NM_153018 124961 Hs.48832 NM_153018 HPRD:08705 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 561_WT_peak_1012 chr10 64576642 64576832 + 69 NA promoter-TSS (NM_001136177) promoter-TSS (NM_001136177) -611 NM_001136177 1959 Hs.1395 NM_000399 HPRD:00551 EGR2 AT591|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 561_WT_peak_2696 chr16 11146034 11146437 + 69 NA intron (NM_015226, intron 17 of 22) intron (NM_015226, intron 17 of 22) 107890 NM_001243403 23274 Hs.35490 NM_015226 HPRD:17185 CLEC16A Gop-1|KIAA0350 C-type lectin domain family 16, member A protein-coding 561_WT_peak_2262 chr14 65879058 65879396 + 69 NA promoter-TSS (NR_038170) promoter-TSS (NR_038170) 108 NR_024334 645431 Hs.713717 NR_024334 FUT8-AS1 - FUT8 antisense RNA 1 ncRNA 561_WT_peak_5424 chr4 15783408 15783608 + 69 NA intron (NM_001775, intron 1 of 7) MLT1H1|LTR|ERVL-MaLR 3577 NM_001775 952 Hs.479214 NM_001775 CD38 ADPRC 1|T10 CD38 molecule protein-coding 561_WT_peak_5962 chr5 140105704 140105945 + 69 NA promoter-TSS (NR_026705) promoter-TSS (NR_026705) 80 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 561_WT_peak_1847 chr12 110011093 110011312 + 69 NA promoter-TSS (NM_000431) promoter-TSS (NM_000431) 156 NM_052845 326625 Hs.12106 NM_052845 HPRD:07398 MMAB ATR|CFAP23|cblB|cob methylmalonic aciduria (cobalamin deficiency) cblB type protein-coding 561_WT_peak_1838 chr12 107349089 107349515 + 69 NA promoter-TSS (NM_152261) promoter-TSS (NM_152261) -242 NM_152261 90488 Hs.257664 NM_152261 HPRD:14462 TMEM263 C12orf23 transmembrane protein 263 protein-coding 561_WT_peak_6602 chr7 17980245 17980247 + 69 NA promoter-TSS (NM_015132) promoter-TSS (NM_015132) -115 NM_015132 23161 Hs.487648 NM_015132 HPRD:09418 SNX13 RGS-PX1 sorting nexin 13 protein-coding 561_WT_peak_5756 chr5 55008248 55008547 + 69 NA promoter-TSS (NM_173514) promoter-TSS (NM_173514) -234 NM_173514 153129 Hs.745105 NM_173514 HPRD:08817 SLC38A9 - solute carrier family 38, member 9 protein-coding 561_WT_peak_4246 chr2 109237562 109237860 + 69 NA promoter-TSS (NM_001193484) promoter-TSS (NM_001193484) 9 NM_001193484 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 561_WT_peak_2583 chr15 85197459 85197677 + 69 NA promoter-TSS (NM_032856) promoter-TSS (NM_032856) -47 NM_032856 84942 Hs.745027 NM_032856 HPRD:08608 WDR73 - WD repeat domain 73 protein-coding 561_WT_peak_2420 chr15 34394393 34394532 + 69 NA promoter-TSS (NM_020154) promoter-TSS (NM_020154) 188 NM_152595 161779 Hs.156317 NM_152595 HPRD:17839 PGBD4 - piggyBac transposable element derived 4 protein-coding 561_WT_peak_4140 chr2 71357579 71357812 + 69 NA promoter-TSS (NM_032601) promoter-TSS (NM_032601) 251 NM_005791 10199 Hs.656208 NM_005791 HPRD:10404 MPHOSPH10 CT90|MPP10|MPP10P|PPP1R106 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) protein-coding 561_WT_peak_7439 chr9 131084737 131085169 + 69 NA promoter-TSS (NM_015679) promoter-TSS (NM_015679) 162 NM_016035 51117 Hs.98541 NM_016035 HPRD:16741 COQ4 CGI-92 coenzyme Q4 protein-coding 561_WT_peak_4692 chr20 52323207 52323432 + 69 NA Intergenic Intergenic -123683 NM_006526 7764 Hs.155040 NM_006526 HPRD:04272 ZNF217 ZABC1 zinc finger protein 217 protein-coding 561_WT_peak_2425 chr15 36871420 36871736 + 69 NA promoter-TSS (NM_001130010) promoter-TSS (NM_001130010) -226 NM_001290233 84529 Hs.48348 NM_032499 HPRD:13650 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 561_WT_peak_4044 chr2 43358624 43358854 + 69 NA Intergenic Intergenic -92057 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 561_WT_peak_5333 chr3 179281191 179281458 + 69 NA intron (NM_178042, intron 1 of 13) CpG 616 NM_178042 86 Hs.435326 NM_004301 HPRD:05389 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin-like 6A protein-coding 561_WT_peak_4979 chr22 50977606 50978639 + 69 NA Intergenic MER57F|LTR|ERV1 -7114 NM_001014440 440836 Hs.531314 NM_001014440 HPRD:18640 ODF3B ODF3L3 outer dense fiber of sperm tails 3B protein-coding 561_WT_peak_4068 chr2 54308846 54309068 + 69 NA Intergenic Intergenic -33453 NM_138448 98 Hs.516173 NM_138448 HPRD:00028 ACYP2 ACYM|ACYP acylphosphatase 2, muscle type protein-coding 561_WT_peak_5851 chr5 90677057 90677378 + 69 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) 1053 NR_027435 100129716 Hs.116364 NR_027435 ARRDC3-AS1 - ARRDC3 antisense RNA 1 ncRNA 561_WT_peak_4574 chr20 18269012 18269362 + 69 NA exon (NM_001283007, exon 1 of 3) exon (NM_001283007, exon 1 of 3) 260 NM_001283008 7692 Hs.472221 NM_003434 HPRD:04964 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 561_WT_peak_5991 chr5 154237178 154237349 + 69 NA promoter-TSS (NM_001301074) promoter-TSS (NM_001301074) -546 NM_001301083 9337 Hs.26703 NM_004779 HPRD:07225 CNOT8 CAF1|CALIF|Caf1b|POP2|hCAF1 CCR4-NOT transcription complex, subunit 8 protein-coding 561_WT_peak_5041 chr3 27794610 27794757 + 69 NA Intergenic HAL1|LINE|L1 -30477 NM_001278183 8320 Hs.591663 NM_005442 HPRD:07054 EOMES TBR2 eomesodermin protein-coding 561_WT_peak_1829 chr12 102591695 102591855 + 69 NA promoter-TSS (NM_002674) promoter-TSS (NM_002674) -161 NM_002674 5367 Hs.707990 NM_002674 HPRD:01459 PMCH MCH pro-melanin-concentrating hormone protein-coding 561_WT_peak_4273 chr2 114647318 114647605 + 69 NA promoter-TSS (NR_102318) promoter-TSS (NR_102318) -50 NR_102318 10096 Hs.433512 NM_005721 HPRD:05024 ACTR3 ARP3 ARP3 actin-related protein 3 homolog (yeast) protein-coding 561_WT_peak_3616 chr19 10399833 10400029 + 69 NA promoter-TSS (NM_003259) promoter-TSS (NM_003259) -724 NM_003259 7087 Hs.465862 NM_003259 HPRD:03509 ICAM5 TLCN|TLN intercellular adhesion molecule 5, telencephalin protein-coding 561_WT_peak_6123 chr6 20543515 20543803 + 69 NA intron (NM_017774, intron 2 of 15) L1MD1|LINE|L1 8971 NM_017774 54901 Hs.657604 NM_017774 HPRD:13022 CDKAL1 - CDK5 regulatory subunit associated protein 1-like 1 protein-coding 561_WT_peak_4710 chr20 58515933 58516001 + 69 NA promoter-TSS (NM_006242) promoter-TSS (NM_006242) 523 NM_001190827 63939 Hs.54973 NM_022106 HPRD:12758 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217, member B protein-coding 561_WT_peak_3320 chr17 66031884 66032182 + 68 NA intron (NM_002266, intron 1 of 10) CpG 185 NM_002266 3838 Hs.594238 NM_002266 HPRD:02818 KPNA2 IPOA1|QIP2|RCH1|SRP1alpha karyopherin alpha 2 (RAG cohort 1, importin alpha 1) protein-coding 561_WT_peak_6907 chr7 152161156 152161373 + 68 NA promoter-TSS (NR_027387) promoter-TSS (NR_027387) 55 NR_027387 100128822 Hs.647112 NR_027387 ENSG00000261455 LINC01003 - long intergenic non-protein coding RNA 1003 ncRNA 561_WT_peak_5001 chr3 11314045 11314279 + 68 NA intron (NM_001144912, intron 1 of 16) intron (NM_001144912, intron 1 of 16) 152 NM_001144912 10533 Hs.38032 NM_006395 HPRD:12293 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 561_WT_peak_6312 chr6 37257835 37258238 + 68 NA intron (NM_017772, intron 7 of 12) intron (NM_017772, intron 7 of 12) -32105 NM_001162900 221468 Hs.520101 NM_145316 HPRD:12848 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 561_WT_peak_7624 chrX 152200716 152201019 + 68 NA Intergenic Intergenic -23899 NM_013364 29944 Hs.449627 NM_013364 HPRD:06677 PNMA3 MA3|MA5 paraneoplastic Ma antigen 3 protein-coding 561_WT_peak_1096 chr10 93704806 93704982 + 68 NA intron (NM_003972, intron 4 of 37) L1MB8|LINE|L1 21158 NM_003972 9044 Hs.500526 NM_003972 HPRD:05546 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa protein-coding 561_WT_peak_6261 chr6 30312985 30313158 + 68 NA intron (NM_024839, intron 1 of 4).6 CpG 165 NM_001199121 79897 Hs.183232 NM_024839 HPRD:15275 RPP21 C6orf135|CAT60 ribonuclease P/MRP 21kDa subunit protein-coding 561_WT_peak_578 chr1 160653133 160653307 + 68 NA intron (NM_001256030, intron 2 of 2) MER63D|DNA|hAT-Blackjack 28421 NM_001256030 962 Hs.243564 NM_001778 HPRD:00177 CD48 BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48 CD48 molecule protein-coding 561_WT_peak_7609 chrX 123096930 123097168 + 68 NA intron (NM_001282418, intron 2 of 33) intron (NM_001282418, intron 2 of 33) 1493 NM_006603 10735 Hs.496710 NM_006603 HPRD:05077 STAG2 SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 561_WT_peak_1631 chr12 26901817 26901995 + 68 NA intron (NM_002223, intron 2 of 56) intron (NM_002223, intron 2 of 56) 84225 NM_002223 3709 Hs.512235 NM_002223 HPRD:02536 ITPR2 CFAP48|IP3R2 inositol 1,4,5-trisphosphate receptor, type 2 protein-coding 561_WT_peak_4390 chr2 190305530 190305680 + 68 NA promoter-TSS (NM_032168) promoter-TSS (NM_032168) -554 NM_032168 84128 Hs.399984 NM_032168 HPRD:07775 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 561_WT_peak_4384 chr2 181988460 181988880 + 68 NA Intergenic Intergenic 142819 NM_001278554 10477 Hs.470804 NM_006357 HPRD:05000 UBE2E3 UBCH9|UbcM2 ubiquitin-conjugating enzyme E2E 3 protein-coding 561_WT_peak_3851 chr19 49838816 49839153 + 68 NA exon (NM_001774, exon 2 of 8) exon (NM_001774, exon 2 of 8) 307 NM_001774 951 Hs.166556 NM_001774 HPRD:01053 CD37 GP52-40|TSPAN26 CD37 molecule protein-coding 561_WT_peak_3366 chr17 76355438 76355623 + 68 NA promoter-TSS (NR_110847) promoter-TSS (NR_110847) 630 NM_003955 9021 Hs.527973 NM_003955 HPRD:05006 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 561_WT_peak_611 chr1 169013692 169013779 + 68 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 42508 NR_104091 101978719 Hs.517849 NR_104091 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 561_WT_peak_3072 chr17 19551575 19551959 + 68 NA promoter-TSS (NM_000382) promoter-TSS (NM_000382) -297 NM_000382 224 Hs.499886 NM_000382 HPRD:07188 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family, member A2 protein-coding 561_WT_peak_4708 chr20 57739064 57739182 + 68 NA Intergenic Intergenic -26952 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174|dJ492J12.1 zinc finger protein 831 protein-coding 561_WT_peak_2464 chr15 45020508 45020979 + 68 NA promoter-TSS (NR_125376) promoter-TSS (NR_125376) -443 NR_125376 100419583 Hs.489254 NR_125376 LOC100419583 - ring finger protein 4 pseudogene pseudo 561_WT_peak_4488 chr2 231526456 231526767 + 68 NA Intergenic MLT1B|LTR|ERVL-MaLR 38633 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LOC151475 - uncharacterized LOC151475 ncRNA 561_WT_peak_1186 chr11 1968560 1968751 + 68 NA intron (NM_021134, intron 1 of 4) CpG 153 NM_021134 6150 Hs.3254 NM_021134 HPRD:02876 MRPL23 L23MRP|RPL23|RPL23L mitochondrial ribosomal protein L23 protein-coding 561_WT_peak_1483 chr11 111749876 111750134 + 68 NA promoter-TSS (NM_022761) promoter-TSS (NM_022761) 57 NM_022761 64776 Hs.17546 NM_022761 HPRD:12601 C11orf1 - chromosome 11 open reading frame 1 protein-coding 561_WT_peak_4750 chr21 16197873 16198138 + 68 NA Intergenic Intergenic -182577 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 561_WT_peak_6364 chr6 64346292 64346567 + 68 NA promoter-TSS (NM_001290260) promoter-TSS (NM_001290260) 43 NM_001290260 23469 Hs.348921 NM_015153 HPRD:08477 PHF3 - PHD finger protein 3 protein-coding 561_WT_peak_449 chr1 145759430 145759680 + 68 NA intron (NM_002614, intron 7 of 9) intron (NM_002614, intron 7 of 9) 31889 NM_001201326 5174 Hs.444751 NM_002614 HPRD:04829 PDZK1 CAP70|CLAMP|NHERF-3|NHERF3|PDZD1 PDZ domain containing 1 protein-coding 561_WT_peak_4158 chr2 75873886 75874123 + 68 NA promoter-TSS (NM_014763) promoter-TSS (NM_014763) 95 NM_014763 9801 Hs.44024 NM_014763 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 561_WT_peak_6654 chr7 44058624 44058831 + 68 NA promoter-TSS (NR_003655) promoter-TSS (NR_003655) 21 NR_003655 84820 Hs.657028 NM_032734 ENSG00000214783 POLR2J4 RPB11-phi polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene pseudo 561_WT_peak_3613 chr19 9785589 9785633 + 68 NA intron (NM_001300885, intron 1 of 5) CpG 165 NM_001300885 54811 Hs.371107 NM_017656 HPRD:15844 ZNF562 - zinc finger protein 562 protein-coding 561_WT_peak_1927 chr12 132628924 132629124 + 68 NA promoter-TSS (NM_175066) promoter-TSS (NM_175066) 31 NM_024078 79050 Hs.558536 NM_024078 HPRD:14543 NOC4L NET49|NOC4|UTP19 nucleolar complex associated 4 homolog (S. cerevisiae) protein-coding 561_WT_peak_6744 chr7 89975900 89976365 + 68 NA intron (NM_001042717, intron 1 of 7) intron (NM_001042717, intron 1 of 7) 153 NM_033107 85865 Hs.593547 NM_033107 HPRD:14262 GTPBP10 ObgH2 GTP-binding protein 10 (putative) protein-coding 561_WT_peak_4500 chr2 234240160 234240370 + 68 NA intron (NM_000541, intron 9 of 15) intron (NM_000541, intron 9 of 15) -22888 NM_152879 8527 Hs.471675 NM_003648 HPRD:03492 DGKD DGKdelta|dgkd-2 diacylglycerol kinase, delta 130kDa protein-coding 561_WT_peak_1234 chr11 22851015 22851364 + 68 NA intron (NM_148893, intron 1 of 3) CpG 193 NM_148893 258010 Hs.349096 NM_148893 SVIP - small VCP/p97-interacting protein protein-coding 561_WT_peak_2258 chr14 65222659 65222831 + 68 NA intron (NM_001024858, intron 31 of 34) LTR60|LTR|ERV1 29659 NR_107009 102465841 NR_107009 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 561_WT_peak_1080 chr10 88731137 88731327 + 68 NA TTS (NM_006829) TTS (NM_006829) 734 NM_133447 119385 Hs.511787 NM_133447 AGAP11 - ankyrin repeat and GTPase domain Arf GTPase activating protein 11 protein-coding 561_WT_peak_860 chr10 5931716 5931975 + 68 NA promoter-TSS (NM_019046) promoter-TSS (NM_019046) 15 NM_001009943 54522 Hs.289828 NM_019046 HPRD:12459 ANKRD16 - ankyrin repeat domain 16 protein-coding 561_WT_peak_1692 chr12 50478784 50478959 + 68 NA promoter-TSS (NM_003076) promoter-TSS (NM_003076) -112 NM_139071 6602 Hs.79335 NM_003076 HPRD:03438 SMARCD1 BAF60A|CRACD1|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein-coding 561_WT_peak_5719 chr5 43008162 43008672 + 68 NA Intergenic Intergenic 10496 NR_034086 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 561_WT_peak_1740 chr12 58088028 58088191 + 68 NA intron (NM_001261423, intron 1 of 12) intron (NM_001261423, intron 1 of 12) 371 NM_001261421 10956 Hs.527861 NM_006812 HPRD:17804 OS9 ERLEC2|OS-9 osteosarcoma amplified 9, endoplasmic reticulum lectin protein-coding 561_WT_peak_132 chr1 27226679 27226902 + 68 NA exon (NM_022078, exon 1 of 7) exon (NM_022078, exon 1 of 7) 172 NM_022078 63906 Hs.10903 NM_022078 HPRD:07772 GPATCH3 GPATC3 G patch domain containing 3 protein-coding 561_WT_peak_6480 chr6 135335572 135335823 + 67 NA intron (NM_001145158, intron 3 of 16) intron (NM_001145158, intron 3 of 16) -35127 NR_037435 100500880 NR_037435 MIR3662 - microRNA 3662 ncRNA 561_WT_peak_7363 chr9 98783307 98783552 + 67 NA non-coding (NR_024129, exon 2 of 2) non-coding (NR_024129, exon 2 of 2) 608 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092|bA346B7.1 long intergenic non-protein coding RNA 92 ncRNA 561_WT_peak_1254 chr11 36310778 36310938 + 67 NA intron (NM_014186, intron 1 of 5) MIR3|SINE|MIR 141 NM_001101653 29099 Hs.279836 NM_014186 COMMD9 - COMM domain containing 9 protein-coding 561_WT_peak_5109 chr3 50274572 50274822 + 67 NA intron (NM_001282618, intron 1 of 7) intron (NM_001282618, intron 1 of 7) 1108 NM_001282618 2771 Hs.77269 NM_002070 HPRD:00764 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 protein-coding 561_WT_peak_5247 chr3 128837753 128837976 + 67 NA intron (NM_001204890, intron 11 of 12) L1ME1|LINE|L1 2783 NM_198490 339122 Hs.381132 NM_198490 HPRD:17947 RAB43 RAB11B|RAB41 RAB43, member RAS oncogene family protein-coding 561_WT_peak_723 chr1 212731961 212732343 + 67 NA Intergenic CpG -6524 NM_001030287 467 Hs.460 NM_001674 HPRD:04395 ATF3 - activating transcription factor 3 protein-coding 561_WT_peak_1227 chr11 18343793 18344085 + 67 NA promoter-TSS (NM_181507) promoter-TSS (NM_181507) 123 NM_005316 2965 Hs.577202 NM_005316 HPRD:01807 GTF2H1 BTF2|P62|TFB1|TFIIH general transcription factor IIH, polypeptide 1, 62kDa protein-coding 561_WT_peak_6976 chr8 37707314 37707570 + 67 NA promoter-TSS (NM_018310) promoter-TSS (NM_018310) -11 NM_018310 55290 Hs.709301 NM_018310 BRF2 BRFU|TFIIIB50 BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit protein-coding 561_WT_peak_6421 chr6 106968647 106969005 + 67 NA exon (NM_001624, exon 2 of 20) exon (NM_001624, exon 2 of 20) 9096 NM_001624 202 Hs.724262 NM_001624 HPRD:18576 AIM1 CRYBG1|ST4 absent in melanoma 1 protein-coding 561_WT_peak_3831 chr19 48866966 48867028 + 67 NA promoter-TSS (NM_012451) promoter-TSS (NM_012451) 189 NM_018273 55260 Hs.351335 NM_018273 HPRD:08556 TMEM143 - transmembrane protein 143 protein-coding 561_WT_peak_6260 chr6 30294495 30294677 + 67 NA promoter-TSS (NM_021253) promoter-TSS (NM_021253) -35 NM_021253 56658 Hs.413493 NM_021253 HPRD:09298 TRIM39 RNF23|TFP|TRIM39B tripartite motif containing 39 protein-coding 561_WT_peak_7585 chrX 77166256 77166427 + 67 NA intron (NR_104109, intron 1 of 9) intron (NR_104109, intron 1 of 9) 188 NR_104109 538 Hs.496414 NM_000052 HPRD:02054 ATP7A DSMAX|MK|MNK|SMAX3 ATPase, Cu++ transporting, alpha polypeptide protein-coding 561_WT_peak_3514 chr18 57026079 57026385 + 67 NA intron (NM_005570, intron 1 of 12) CpG 276 NM_005570 3998 Hs.465295 NM_005570 HPRD:03338 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose-binding, 1 protein-coding 561_WT_peak_5353 chr3 186848363 186848599 + 67 NA intron (NM_052969, intron 1 of 2) MSTA|LTR|ERVL-MaLR 8782 NM_052969 116832 Hs.647900 NM_052969 HPRD:09610 RPL39L RPL39L1 ribosomal protein L39-like protein-coding 561_WT_peak_4572 chr20 18118362 18118690 + 67 NA promoter-TSS (NM_001164811) promoter-TSS (NM_001164811) 27 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000149474 PET117 CSRP2BP PET117 homolog (S. cerevisiae) protein-coding 561_WT_peak_3622 chr19 10908309 10908773 + 67 NA intron (NM_001005361, intron 10 of 20) intron (NM_001005361, intron 10 of 20) 17611 NR_039903 100616425 NR_039903 MIR4748 - microRNA 4748 ncRNA 561_WT_peak_2107 chr13 113951827 113952171 + 67 NA intron (NM_005561, intron 1 of 8) intron (NM_005561, intron 1 of 8) 530 NM_005561 3916 Hs.494419 NM_005561 HPRD:01076 LAMP1 CD107a|LAMPA|LGP120 lysosomal-associated membrane protein 1 protein-coding 561_WT_peak_3975 chr2 17935201 17935379 + 67 NA promoter-TSS (NM_001142286) promoter-TSS (NM_001142286) 113 NM_182625 348654 Hs.467793 NM_182625 HPRD:08813 GEN1 Gen GEN1 Holliday junction 5' flap endonuclease protein-coding 561_WT_peak_5064 chr3 40350883 40351174 + 67 NA promoter-TSS (NM_005875) promoter-TSS (NM_005875) -145 NM_005875 10289 Hs.315230 NM_005875 HPRD:17032 EIF1B GC20 eukaryotic translation initiation factor 1B protein-coding 561_WT_peak_7036 chr8 66546494 66546752 + 67 NA promoter-TSS (NM_018120) promoter-TSS (NM_018120) -171 NM_018120 55156 Hs.269542 NM_018120 HPRD:16506 ARMC1 Arcp armadillo repeat containing 1 protein-coding 561_WT_peak_5120 chr3 52279928 52280183 + 67 NA promoter-TSS (NM_001122870) promoter-TSS (NM_001122870) -131 NM_001122870 132160 Hs.373560 NM_144641 HPRD:12350 PPM1M PP2C-eta|PP2CE|PP2Ceta protein phosphatase, Mg2+/Mn2+ dependent, 1M protein-coding 561_WT_peak_730 chr1 217804201 217804393 + 67 NA promoter-TSS (NM_138796) promoter-TSS (NM_138796) 147 NM_018040 55105 Hs.362343 NM_018040 HPRD:07657 GPATCH2 CT110|GPATC2|PPP1R30 G patch domain containing 2 protein-coding 561_WT_peak_869 chr10 6515481 6515746 + 67 NA intron (NM_001282644, intron 12 of 17) intron (NM_001282644, intron 12 of 17) 106650 NM_001282644 5588 Hs.498570 NM_006257 HPRD:02710 PRKCQ PRKCT|nPKC-theta protein kinase C, theta protein-coding 561_WT_peak_2944 chr16 87929310 87929575 + 67 NA intron (NM_001739, intron 5 of 6) L1ME1|LINE|L1 -26342 NM_003486 8140 Hs.513797 NM_003486 HPRD:02552 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 protein-coding 561_WT_peak_3053 chr17 16439083 16439417 + 67 NA Intergenic CpG 33270 NM_020653 57336 Hs.99724 NM_020653 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 561_WT_peak_378 chr1 111746859 111747127 + 67 NA 5' UTR (NM_001271833, exon 1 of 12) 5' UTR (NM_001271833, exon 1 of 12) 167 NM_001271833 79961 Hs.557850 NM_024901 DENND2D - DENN/MADD domain containing 2D protein-coding 561_WT_peak_6730 chr7 75987932 75988171 + 67 NA exon (NM_012479, exon 1 of 2) exon (NM_012479, exon 1 of 2) 291 NM_012479 7532 Hs.744840 NM_012479 HPRD:05639 YWHAG 14-3-3GAMMA|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma protein-coding 561_WT_peak_7425 chr9 128003278 128003522 + 67 NA exon (NM_005347, exon 1 of 8) exon (NM_005347, exon 1 of 8) 266 NM_005347 3309 Hs.743241 NM_005347 HPRD:00682 HSPA5 BIP|GRP78|HEL-S-89n|MIF2 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) protein-coding 561_WT_peak_4362 chr2 171785540 171785935 + 67 NA 5' UTR (NM_015530, exon 1 of 10) 5' UTR (NM_015530, exon 1 of 10) 701 NM_015530 26003 Hs.431317 NM_015530 HPRD:08303 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2, 55kDa protein-coding 561_WT_peak_7234 chr9 26946957 26947344 + 67 NA promoter-TSS (NM_001099222) promoter-TSS (NM_001099222) 113 NM_001099223 80173 Hs.145402 NM_025103 HPRD:09727 IFT74 CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 561_WT_peak_7102 chr8 103819529 103819763 + 67 NA Intergenic Intergenic 56751 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 561_WT_peak_3684 chr19 18699608 18699939 + 67 NA intron (NM_001100418, intron 1 of 4) CpG 278 NM_001100418 55049 Hs.655317 NM_017967 HPRD:07948 C19orf60 - chromosome 19 open reading frame 60 protein-coding 561_WT_peak_2651 chr16 1877080 1877323 + 67 NA promoter-TSS (NM_001142398) promoter-TSS (NM_001142398) -6 NM_001040427 3029 Hs.157394 NM_005326 HPRD:00731 HAGH GLO2|GLX2|GLXII|HAGH1 hydroxyacylglutathione hydrolase protein-coding 561_WT_peak_1058 chr10 75815874 75816190 + 67 NA intron (NM_003373, intron 2 of 20) intron (NM_003373, intron 2 of 20) 58160 NM_014000 7414 Hs.643896 NM_003373 HPRD:01900 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 561_WT_peak_638 chr1 179851736 179852009 + 67 NA exon (NM_015602, exon 1 of 10) exon (NM_015602, exon 1 of 10) 695 NM_001267578 26092 Hs.496459 NM_015602 HPRD:13958 TOR1AIP1 LAP1|LAP1B torsin A interacting protein 1 protein-coding 561_WT_peak_6439 chr6 111805072 111805312 + 67 NA promoter-TSS (NM_002912) promoter-TSS (NM_002912) -274 NM_002912 5980 Hs.232021 NM_002912 HPRD:04145 REV3L POLZ|REV3 REV3-like, polymerase (DNA directed), zeta, catalytic subunit protein-coding 561_WT_peak_3860 chr19 50145256 50145514 + 67 NA promoter-TSS (NM_021228) promoter-TSS (NM_021228) 3 NM_021228 58506 Hs.103521 NM_021228 HPRD:11604 SCAF1 SRA1 SR-related CTD-associated factor 1 protein-coding 561_WT_peak_3710 chr19 28284499 28284975 + 67 NA promoter-TSS (NR_110687) promoter-TSS (NR_110687) -66 NR_110690 101927151 Hs.567934 NR_110687 LOC101927151 - uncharacterized LOC101927151 ncRNA 561_WT_peak_7066 chr8 90914271 90914606 + 67 NA promoter-TSS (NM_001126111) promoter-TSS (NM_001126111) -324 NM_001126111 734 Hs.436445 NM_004337 HPRD:06853 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 561_WT_peak_5661 chr5 271642 272013 + 67 NA promoter-TSS (NM_013232) promoter-TSS (NM_013232) 91 NM_001267559 10016 Hs.50823 NM_013232 HPRD:03035 PDCD6 ALG-2|PEF1B programmed cell death 6 protein-coding 561_WT_peak_5166 chr3 97483259 97483433 + 67 NA promoter-TSS (NM_032146) promoter-TSS (NM_032146) -19 NM_001278293 84100 Hs.373801 NM_032146 HPRD:10588 ARL6 BBS3|RP55 ADP-ribosylation factor-like 6 protein-coding 561_WT_peak_7574 chrX 70503557 70503775 + 67 NA intron (NM_001145410, intron 1 of 9) CpG 624 NM_001145408 4841 Hs.533282 NM_007363 HPRD:02098 NONO NMT55|NRB54|P54|P54NRB|PPP1R114 non-POU domain containing, octamer-binding protein-coding 561_WT_peak_865 chr10 6125808 6126030 + 67 NA Intergenic Intergenic -5030 NM_032905 84991 Hs.498548 NM_032905 HPRD:09501 RBM17 SPF45 RNA binding motif protein 17 protein-coding 561_WT_peak_807 chr1 235460887 235461197 + 67 NA intron (NM_001206794, intron 2 of 23) L1MC5|LINE|L1 29760 NM_001206794 51742 Hs.575782 NM_016374 HPRD:10661 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT rich interactive domain 4B (RBP1-like) protein-coding 561_WT_peak_4265 chr2 113300027 113300373 + 67 NA exon (NM_001282774, exon 1 of 13) exon (NM_001282774, exon 1 of 13) 587 NM_001282772 84172 Hs.745127 NM_019014 HPRD:06852 POLR1B RPA135|RPA2|Rpo1-2 polymerase (RNA) I polypeptide B, 128kDa protein-coding 561_WT_peak_295 chr1 78149050 78149508 + 67 NA promoter-TSS (NM_015534) promoter-TSS (NM_015534) -936 NM_015534 26009 Hs.480506 NM_015534 HPRD:15907 ZZZ3 ATAC1 zinc finger, ZZ-type containing 3 protein-coding 561_WT_peak_1642 chr12 30907987 30908203 + 67 NA promoter-TSS (NM_032156) promoter-TSS (NM_032156) -647 NM_032156 65981 Hs.234355 NM_023925 HPRD:12711 CAPRIN2 C1QDC1|EEG-1|EEG1|RNG140 caprin family member 2 protein-coding 561_WT_peak_1292 chr11 57480093 57480276 + 67 NA promoter-TSS (NM_153450) promoter-TSS (NM_153450) 189 NR_037646 100528016 Hs.166011 NR_037646 ENSG00000254462 TMX2-CTNND1 - TMX2-CTNND1 readthrough (NMD candidate) ncRNA 561_WT_peak_3815 chr19 46766260 46766440 + 67 NA intron (NR_046936, intron 3 of 3) intron (NR_046936, intron 3 of 3) 33341 NM_198541 374918 Hs.546554 NM_198541 HPRD:17139 IGFL1 APRG644|UNQ644 IGF-like family member 1 protein-coding 561_WT_peak_6981 chr8 38033710 38034083 + 67 NA promoter-TSS (NM_004874) promoter-TSS (NM_004874) -210 NM_001204878 9530 Hs.194726 NM_004874 HPRD:04861 BAG4 BAG-4|SODD BCL2-associated athanogene 4 protein-coding 561_WT_peak_6431 chr6 109704138 109704463 + 67 NA promoter-TSS (NM_001142401) promoter-TSS (NM_001142401) -538 NM_001142401 8763 Hs.520313 NM_006016 HPRD:04523 CD164 MGC-24|MUC-24|endolyn CD164 molecule, sialomucin protein-coding 561_WT_peak_1712 chr12 53846223 53846408 + 67 NA intron (NM_001098620, intron 1 of 13) CpG 429 NM_001128911 5094 Hs.546271 NM_005016 HPRD:03129 PCBP2 HNRNPE2|HNRPE2|hnRNP-E2 poly(rC) binding protein 2 protein-coding 561_WT_peak_4551 chr20 3792357 3792631 + 67 NA intron (NR_109859, intron 3 of 3) intron (NR_109859, intron 3 of 3) 3353 NR_109859 101929125 Hs.744106 NR_109859 LOC101929125 - uncharacterized LOC101929125 ncRNA 561_WT_peak_6065 chr5 180687913 180688278 + 67 NA promoter-TSS (NR_102760) promoter-TSS (NR_102760) 24 NM_032765 84851 Hs.458412 NM_032765 TRIM52 RNF102 tripartite motif containing 52 protein-coding 561_WT_peak_5392 chr4 1722395 1722577 + 67 NA promoter-TSS (NM_006342) promoter-TSS (NM_006342) 598 NM_001127266 92305 Hs.518562 NM_138385 HPRD:14290 TMEM129 D4S2561E transmembrane protein 129, E3 ubiquitin protein ligase protein-coding 561_WT_peak_2867 chr16 66907149 66907481 + 67 NA Intergenic Intergenic -7068 NM_020786 57546 Hs.632214 NM_020786 HPRD:15112 PDP2 PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 561_WT_peak_3310 chr17 63119465 63119683 + 67 NA Intergenic CpG -13882 NM_001165933 8787 Hs.664380 NM_003835 HPRD:04962 RGS9 PERRS|RGS9L regulator of G-protein signaling 9 protein-coding 561_WT_peak_2972 chr17 1587872 1588113 + 67 NA intron (NM_006445, intron 1 of 42) CpG 184 NM_006445 10594 Hs.181368 NM_006445 HPRD:06295 PRPF8 HPRP8|PRP8|PRPC8|RP13|SNRNP220 pre-mRNA processing factor 8 protein-coding 561_WT_peak_1788 chr12 89746450 89746759 + 67 NA promoter-TSS (NM_001946) promoter-TSS (NM_001946) 32 NM_001946 1848 Hs.298654 NM_001946 HPRD:04124 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 561_WT_peak_2298 chr14 75726100 75726376 + 67 NA Intergenic Intergenic -19243 NM_005252 2353 Hs.25647 NM_005252 HPRD:01275 FOS AP-1|C-FOS|p55 FBJ murine osteosarcoma viral oncogene homolog protein-coding 561_WT_peak_4073 chr2 55459851 55460039 + 67 NA promoter-TSS (NM_152385) promoter-TSS (NM_152385) 131 NM_001177413 6233 Hs.311640 NM_002954 HPRD:01878 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 561_WT_peak_6150 chr6 26196041 26196537 + 67 NA TTS (NM_003530) TTS (NM_003530) 3232 NM_003530 8351 Hs.532144 NM_003530 HPRD:11905 HIST1H3D H3/b|H3FB histone cluster 1, H3d protein-coding 561_WT_peak_7124 chr8 121761716 121761958 + 67 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -11656 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 561_WT_peak_5060 chr3 38080981 38081176 + 67 NA exon (NM_007335, exon 1 of 37) exon (NM_007335, exon 1 of 37) 382 NM_007337 9940 Hs.714499 NM_007335 HPRD:07234 DLEC1 CFAP81|DLC1|F56 deleted in lung and esophageal cancer 1 protein-coding 561_WT_peak_2776 chr16 30198247 30198435 + 67 NA intron (NM_007074, intron 4 of 10) intron (NM_007074, intron 4 of 10) -1664 NR_002454 606724 Hs.744975 NR_002454 LOC606724 - coronin, actin binding protein, 1A pseudogene pseudo 561_WT_peak_3144 chr17 36884538 36884744 + 67 NA 3' UTR (NM_005937, exon 20 of 20) 3' UTR (NM_005937, exon 20 of 20) -1869 NM_001136498 284106 Hs.713595 NM_001136498 CISD3 Miner2 CDGSH iron sulfur domain 3 protein-coding 561_WT_peak_7605 chrX 119631929 119632128 + 67 NA Intergenic Intergenic -28824 NM_013995 3920 Hs.496684 NM_002294 HPRD:02396 LAMP2 CD107b|LAMP-2|LAMPB|LGP110 lysosomal-associated membrane protein 2 protein-coding 561_WT_peak_1948 chr13 21750542 21750812 + 67 NA promoter-TSS (NM_001166017) promoter-TSS (NM_001166017) 64 NM_001166017 221150 Hs.88523 NM_145061 HPRD:10706 SKA3 C13orf3|RAMA1 spindle and kinetochore associated complex subunit 3 protein-coding 561_WT_peak_4109 chr2 65454503 65454767 + 67 NA promoter-TSS (NM_001005386) promoter-TSS (NM_001005386) -194 NM_005722 10097 Hs.643727 NM_005722 HPRD:05023 ACTR2 ARP2 ARP2 actin-related protein 2 homolog (yeast) protein-coding 561_WT_peak_5331 chr3 177144989 177145234 + 67 NA Intergenic MLT1F1|LTR|ERVL-MaLR -14598 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 561_WT_peak_3706 chr19 24216303 24216656 + 67 NA intron (NM_001278663, intron 1 of 2) intron (NM_001278663, intron 1 of 2) 272 NM_001278677 9534 Hs.434406 NM_004876 HPRD:05304 ZNF254 BMZF-5|HD-ZNF1|ZNF539|ZNF91L zinc finger protein 254 protein-coding 561_WT_peak_7117 chr8 117886819 117887097 + 67 NA promoter-TSS (NR_037404) promoter-TSS (NR_037404) 81 NR_037404 100500914 NR_037404 miRBase:MI0016000 MIR3610 - microRNA 3610 ncRNA 561_WT_peak_2352 chr14 97908703 97908839 + 67 NA Intergenic Intergenic -16382 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LOC101929241 - uncharacterized LOC101929241 ncRNA 561_WT_peak_6846 chr7 130793505 130793728 + 67 NA intron (NR_109855, intron 1 of 4) UCON29|DNA|PiggyBac? 1059 NR_109850 378805 Hs.150556 NM_001085379 ENSG00000226380 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 561_WT_peak_796 chr1 233742610 233742779 + 67 NA Intergenic Intergenic -7056 NM_002245 3775 Hs.208544 NM_002245 HPRD:03447 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium channel, subfamily K, member 1 protein-coding 561_WT_peak_3353 chr17 74381919 74382254 + 67 NA exon (NM_182965, exon 3 of 6) exon (NM_182965, exon 3 of 6) 797 NM_001142602 8877 Hs.68061 NM_021972 HPRD:04768 SPHK1 SPHK sphingosine kinase 1 protein-coding 561_WT_peak_5730 chr5 43483563 43483754 + 67 NA intron (NM_022483, intron 1 of 2) CpG 334 NM_022483 64417 Hs.732093 NM_022483 HPRD:07965 C5orf28 - chromosome 5 open reading frame 28 protein-coding 561_WT_peak_1004 chr10 63046526 63046703 + 67 NA Intergenic Intergenic -165783 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 561_WT_peak_5922 chr5 133968582 133968780 + 67 NA promoter-TSS (NM_001033503) promoter-TSS (NM_001033503) -148 NM_016103 51128 Hs.432984 NM_016103 HPRD:09647 SAR1B ANDD|CMRD|GTBPB|SARA2 secretion associated, Ras related GTPase 1B protein-coding 561_WT_peak_5686 chr5 34915582 34916069 + 67 NA promoter-TSS (NM_018321) promoter-TSS (NM_018321) 5 NM_018321 55299 Hs.718510 NM_018321 BRIX1 BRIX|BXDC2 BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) protein-coding 561_WT_peak_4243 chr2 103034967 103035075 + 67 NA promoter-TSS (NM_003853) promoter-TSS (NM_003853) -229 NM_003853 8807 Hs.158315 NM_003853 HPRD:05147 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 561_WT_peak_2726 chr16 21610453 21610846 + 67 NA promoter-TSS (NM_016025) promoter-TSS (NM_016025) 57 NR_110930 101927814 Hs.555158 NR_110930 LOC101927814 - uncharacterized LOC101927814 ncRNA 561_WT_peak_214 chr1 45273546 45273789 + 67 NA promoter-TSS (NM_001136537) promoter-TSS (NM_001136537) -487 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB (POZ) domain containing 19 protein-coding 561_WT_peak_5700 chr5 40333596 40333893 + 67 NA Intergenic Intergenic 281351 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 561_WT_peak_6490 chr6 138029199 138029398 + 67 NA Intergenic Intergenic 30876 NR_121618 100507406 Hs.556703 NR_121618 ENSG00000234956 LOC100507406 - uncharacterized LOC100507406 ncRNA 561_WT_peak_3123 chr17 33469201 33469407 + 67 NA promoter-TSS (NM_018096) promoter-TSS (NM_018096) 30 NM_018096 54475 Hs.85570 NM_018096 HPRD:16903 NLE1 Nle notchless homolog 1 (Drosophila) protein-coding 561_WT_peak_749 chr1 225632691 225632870 + 67 NA Intergenic Intergenic -16223 NM_194442 3930 Hs.435166 NM_002296 HPRD:02488 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 561_WT_peak_320 chr1 92270147 92270524 + 67 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 81501 NM_003243 7049 Hs.482390 NM_003243 HPRD:02846 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 561_WT_peak_7350 chr9 95087540 95087803 + 67 NA promoter-TSS (NM_001286969) promoter-TSS (NM_001286969) -79 NM_001286969 401541 Hs.713775 NM_001012267 CENPP CENP-P centromere protein P protein-coding 561_WT_peak_1277 chr11 47663820 47664039 + 67 NA intron (NM_014342, intron 1 of 12) CpG 277 NM_014342 23788 Hs.269944 NM_014342 HPRD:14788 MTCH2 MIMP|SLC25A50 mitochondrial carrier 2 protein-coding 561_WT_peak_124 chr1 27018809 27019209 + 67 NA Intergenic Intergenic -3513 NM_006015 8289 Hs.468972 NM_006015 HPRD:04319 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT rich interactive domain 1A (SWI-like) protein-coding 561_WT_peak_5564 chr4 103265855 103266184 + 67 NA 5' UTR (NM_001135147, exon 2 of 11) 5' UTR (NM_001135147, exon 2 of 11) 329 NM_022154 64116 Hs.288034 NM_022154 HPRD:12286 SLC39A8 BIGM103|LZT-Hs6|ZIP8 solute carrier family 39 (zinc transporter), member 8 protein-coding 561_WT_peak_4831 chr22 18893587 18893915 + 67 NA promoter-TSS (NM_005675) promoter-TSS (NM_005675) 15 NM_005675 8214 Hs.474185 NM_005675 HPRD:03177 DGCR6 - DiGeorge syndrome critical region gene 6 protein-coding 561_WT_peak_6770 chr7 99686446 99686779 + 67 NA promoter-TSS (NM_006833) promoter-TSS (NM_006833) 29 NM_006833 10980 Hs.15591 NM_006833 HPRD:16735 COPS6 CSN6|MOV34-34KD COP9 signalosome subunit 6 protein-coding 561_WT_peak_5237 chr3 125094003 125094316 + 67 NA promoter-TSS (NM_021964) promoter-TSS (NM_021964) 39 NM_021964 7707 Hs.592591 NM_021964 HPRD:03540 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 561_WT_peak_5999 chr5 157030382 157030758 + 67 NA Intergenic Intergenic -27739 NM_033274 8728 Hs.483944 NM_023038 HPRD:04704 ADAM19 MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 561_WT_peak_4133 chr2 70369795 70370259 + 67 NA Intergenic CpG -17579 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LOC100133985 - uncharacterized LOC100133985 ncRNA 561_WT_peak_3361 chr17 75953993 75954163 + 67 NA Intergenic CpG -46240 NM_018996 57690 Hs.569831 NM_018996 HPRD:10026 TNRC6C - trinucleotide repeat containing 6C protein-coding 561_WT_peak_1157 chr10 121065438 121065860 + 67 NA intron (NM_005308, intron 1 of 15) intron (NM_005308, intron 1 of 15) -71835 NR_039829 100616398 NR_039829 MIR4681 - microRNA 4681 ncRNA 561_WT_peak_4287 chr2 128283793 128284081 + 67 NA 5' UTR (NM_017969, exon 1 of 14) 5' UTR (NM_017969, exon 1 of 14) 150 NM_017969 55677 Hs.469879 NM_017969 HPRD:07639 IWS1 - IWS1 homolog (S. cerevisiae) protein-coding 561_WT_peak_4155 chr2 75071274 75071471 + 67 NA intron (NM_000189, intron 1 of 17) MIR3|SINE|MIR 11590 NM_000189 3099 Hs.406266 NM_000189 HPRD:03080 HK2 HKII|HXK2 hexokinase 2 protein-coding 561_WT_peak_6017 chr5 171538373 171538551 + 67 NA intron (NM_005990, intron 4 of 18) intron (NM_005990, intron 4 of 18) 76884 NM_005990 6793 Hs.744005 NM_005990 HPRD:06796 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 561_WT_peak_1065 chr10 76970012 76970189 + 67 NA promoter-TSS (NM_003375) promoter-TSS (NM_003375) 188 NM_001184823 7417 Hs.355927 NM_003375 HPRD:01904 VDAC2 POR voltage-dependent anion channel 2 protein-coding 561_WT_peak_5265 chr3 134204620 134204957 + 67 NA promoter-TSS (NM_015391) promoter-TSS (NM_015391) 43 NM_001242375 25847 Hs.106909 NM_015391 HPRD:08531 ANAPC13 APC13|SWM1 anaphase promoting complex subunit 13 protein-coding 561_WT_peak_4394 chr2 191224797 191224970 + 67 NA exon (NM_002194, exon 2 of 6) exon (NM_002194, exon 2 of 6) 16687 NM_002194 3628 Hs.32309 NM_002194 HPRD:00923 INPP1 - inositol polyphosphate-1-phosphatase protein-coding 561_WT_peak_2998 chr17 5015190 5015421 + 67 NA 5' UTR (NM_014519, exon 2 of 5) 5' UTR (NM_014519, exon 2 of 5) 11092 NM_014519 7775 Hs.279914 NM_014519 HPRD:15755 ZNF232 ZSCAN11 zinc finger protein 232 protein-coding 561_WT_peak_2284 chr14 74353062 74353340 + 67 NA promoter-TSS (NM_001242928) promoter-TSS (NM_001242928) -117 NM_001242924 57862 Hs.270869 NM_021188 HPRD:18339 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 561_WT_peak_7463 chr9 134000916 134001224 + 67 NA 5' UTR (NM_005085, exon 1 of 36) 5' UTR (NM_005085, exon 1 of 36) 122 NM_005085 8021 Hs.654530 NM_005085 HPRD:00258 NUP214 CAIN|CAN|D9S46E|N214|p250 nucleoporin 214kDa protein-coding 561_WT_peak_2046 chr13 49137659 49137885 + 67 NA Intergenic Intergenic 17265 NR_051983 100129597 Hs.175225 NR_051983 ENSG00000233610 LINC00462 - long intergenic non-protein coding RNA 462 ncRNA 561_WT_peak_4898 chr22 37177956 37178126 + 67 NA Intergenic Intergenic -5864 NR_033531 11020 Hs.415172 NM_006860 ENSG00000100360 IFT27 BBS19|RABL4|RAYL intraflagellar transport 27 protein-coding 561_WT_peak_7160 chr8 133930543 133930737 + 67 NA intron (NM_003235, intron 20 of 47) intron (NM_003235, intron 20 of 47) 51435 NM_003235 7038 Hs.654591 NM_003235 HPRD:01782 TG AITD3|TGN thyroglobulin protein-coding 561_WT_peak_4612 chr20 33872393 33872751 + 67 NA promoter-TSS (NM_001267810) promoter-TSS (NM_001267810) 47 NR_052023 3692 Hs.743992 NM_002212 HPRD:04221 EIF6 CAB|EIF3A|ITGB4BP|b(2)gcn|eIF-6|p27(BBP)|p27BBP eukaryotic translation initiation factor 6 protein-coding 561_WT_peak_5616 chr4 149363805 149364074 + 67 NA promoter-TSS (NM_001166104) promoter-TSS (NM_001166104) -267 NM_001166104 4306 Hs.163924 NM_000901 HPRD:02991 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3, group C, member 2 protein-coding 561_WT_peak_3445 chr18 13675079 13675155 + 67 NA intron (NM_001098801, intron 3 of 4) intron (NM_001098801, intron 3 of 4) 33360 NM_001276251 753 Hs.731853 NM_004338 HPRD:07358 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 561_WT_peak_4324 chr2 149267043 149267082 + 67 NA intron (NM_018328, intron 13 of 14) intron (NM_018328, intron 13 of 14) -135498 NM_015630 26122 Hs.23270 NM_015630 HPRD:13274 EPC2 EPC-LIKE enhancer of polycomb homolog 2 (Drosophila) protein-coding 561_WT_peak_5787 chr5 68338869 68339045 + 67 NA Intergenic Intergenic -50819 NM_001251969 64924 Hs.631975 NM_022902 HPRD:06381 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 (zinc transporter), member 5 protein-coding 561_WT_peak_2918 chr16 79662511 79662718 + 67 NA Intergenic Intergenic -27992 NM_001031804 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 561_WT_peak_6101 chr6 11366890 11366984 + 66 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 15644 NM_001142393 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 561_WT_peak_3947 chr2 3523097 3523362 + 66 NA exon (NM_018269, exon 1 of 4) exon (NM_018269, exon 1 of 4) 121 NM_018269 55256 Hs.502773 NM_018269 HPRD:17607 ADI1 APL1|ARD|Fe-ARD|MTCBP1|Ni-ARD|SIPL|mtnD acireductone dioxygenase 1 protein-coding 561_WT_peak_5714 chr5 42950712 42951049 + 66 NA Intergenic Intergenic 42555 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 561_WT_peak_7218 chr9 19126929 19127340 + 66 NA intron (NM_001122, intron 1 of 7) intron (NM_001122, intron 1 of 7) 470 NR_038064 123 Hs.3416 NM_001122 HPRD:00057 PLIN2 ADFP|ADRP perilipin 2 protein-coding 561_WT_peak_4234 chr2 100106813 100107038 + 66 NA promoter-TSS (NM_001037872) promoter-TSS (NM_001037872) -445 NM_001037872 51455 Hs.443077 NM_016316 HPRD:16202 REV1 REV1L REV1, polymerase (DNA directed) protein-coding 561_WT_peak_4035 chr2 40005945 40006028 + 66 NA intron (NR_028102, intron 1 of 10) intron (NR_028102, intron 1 of 10) 430 NM_025264 80745 Hs.468254 NM_025264 HPRD:15506 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 561_WT_peak_633 chr1 176176137 176176316 + 66 NA 5' UTR (NM_022457, exon 1 of 20) 5' UTR (NM_022457, exon 1 of 20) 154 NM_001001740 64326 Hs.523744 NM_022457 HPRD:07455 RFWD2 COP1|RNF200 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase protein-coding 561_WT_peak_1813 chr12 96336367 96336570 + 66 NA promoter-TSS (NM_152435) promoter-TSS (NM_152435) -40 NM_182496 120935 Hs.210377 NM_182496 HPRD:08268 CCDC38 - coiled-coil domain containing 38 protein-coding 561_WT_peak_2275 chr14 72022377 72022559 + 66 NA intron (NM_015556, intron 1 of 21) Tigger1|DNA|TcMar-Tigger 26439 NM_001284245 26037 Hs.654657 NM_015556 HPRD:11559 SIPA1L1 E6TP1 signal-induced proliferation-associated 1 like 1 protein-coding 561_WT_peak_621 chr1 172608604 172608787 + 66 NA Intergenic Intergenic -19490 NM_000639 356 Hs.2007 NM_000639 HPRD:00610 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6 Fas ligand (TNF superfamily, member 6) protein-coding 561_WT_peak_1452 chr11 93394889 93395136 + 66 NA intron (NM_033395, intron 1 of 29) CpG 196 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 KIAA1731 - KIAA1731 protein-coding 561_WT_peak_7284 chr9 70490007 70490266 + 66 NA promoter-TSS (NR_104600) promoter-TSS (NR_104600) 75 NM_001024916 220869 Hs.355950 NM_001024916 HPRD:14134 CBWD5 DC36 COBW domain containing 5 protein-coding 561_WT_peak_1776 chr12 76414601 76415043 + 66 NA Intergenic Intergenic 10734 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 561_WT_peak_1252 chr11 35187350 35187809 + 66 NA intron (NM_001202555, intron 1 of 9) intron (NM_001202555, intron 1 of 9) 27162 NM_001202556 960 Hs.502328 NM_000610 HPRD:00115 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 561_WT_peak_1637 chr12 28343128 28343586 + 66 NA Intergenic CpG -66776 NM_018318 55297 Hs.653125 NM_018318 HPRD:16905 CCDC91 p56 coiled-coil domain containing 91 protein-coding 561_WT_peak_4076 chr2 55509298 55509546 + 66 NA promoter-TSS (NR_027258) promoter-TSS (NR_027258) -33 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 561_WT_peak_7317 chr9 82432362 82432539 + 66 NA Intergenic Intergenic -6995 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 - long intergenic non-protein coding RNA 1507 ncRNA 561_WT_peak_6056 chr5 180615362 180615563 + 66 NA Intergenic tRNA-Val-GTY|tRNA|tRNA 3446 NR_108031 102577426 Hs.277359 NR_108031 LOC102577426 - uncharacterized LOC102577426 ncRNA 561_WT_peak_1853 chr12 110906950 110907230 + 66 NA promoter-TSS (NM_001164372) promoter-TSS (NM_001164372) -564 NM_001164372 51184 Hs.634680 NM_016301 HPRD:17498 GPN3 ATPBD1C GPN-loop GTPase 3 protein-coding 561_WT_peak_4206 chr2 95873142 95873429 + 66 NA Intergenic CpG 42123 NM_001017396 7549 Hs.590916 NM_021088 HPRD:11834 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 561_WT_peak_6133 chr6 25405171 25405354 + 66 NA intron (NM_017640, intron 2 of 36) intron (NM_017640, intron 2 of 36) 125606 NM_001173977 55604 Hs.649550 NM_017640 HPRD:11285 LRRC16A CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5 leucine rich repeat containing 16A protein-coding 561_WT_peak_2521 chr15 66662347 66662656 + 66 NA Intergenic Intergenic -13447 NM_001289986 54962 Hs.744308 NM_017858 TIPIN - TIMELESS interacting protein protein-coding 561_WT_peak_163 chr1 33458286 33458475 + 66 NA Intergenic Intergenic -27966 NM_001127361 127544 Hs.591504 NM_153341 HPRD:13725 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 561_WT_peak_2876 chr16 68056931 68057163 + 66 NA exon (NM_018380, exon 1 of 1) exon (NM_018380, exon 1 of 1) 200 NM_001271762 54920 Hs.534460 NM_017803 HPRD:08624 DUS2 DUS2L|SMM1|URLC8 dihydrouridine synthase 2 protein-coding 561_WT_peak_5325 chr3 172280644 172280918 + 66 NA Intergenic (GA)n|Simple_repeat|Simple_repeat -39484 NM_001190942 8743 Hs.478275 NM_003810 HPRD:04670 TNFSF10 APO2L|Apo-2L|CD253|TL2|TRAIL tumor necrosis factor (ligand) superfamily, member 10 protein-coding 561_WT_peak_6091 chr6 5831578 5831779 + 66 NA Intergenic Intergenic -136173 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 561_WT_peak_1121 chr10 102672346 102672524 + 66 NA 5' UTR (NM_001136123, exon 1 of 19) 5' UTR (NM_001136123, exon 1 of 19) 109 NM_001243770 55719 Hs.447458 NM_018121 HPRD:12581 FAM178A C10orf6 family with sequence similarity 178, member A protein-coding 561_WT_peak_6785 chr7 102066880 102067152 + 66 NA non-coding (NR_038967, exon 9 of 9) non-coding (NR_038967, exon 9 of 9) -6961 NM_001126340 80228 Hs.363308 NM_032831 HPRD:09860 ORAI2 C7orf19|CBCIP2|MEM142B|TMEM142B ORAI calcium release-activated calcium modulator 2 protein-coding 561_WT_peak_3990 chr2 26101156 26101372 + 66 NA promoter-TSS (NM_018263) promoter-TSS (NM_018263) 48 NM_018263 55252 Hs.119815 NM_018263 HPRD:10676 ASXL2 ASXH2 additional sex combs like transcriptional regulator 2 protein-coding 561_WT_peak_6354 chr6 56911591 56911833 + 66 NA 5' UTR (NM_001286276, exon 1 of 4) 5' UTR (NM_001286276, exon 1 of 4) 167 NM_001286276 57691 Hs.709521 NM_020931 HPRD:17218 KIAA1586 - KIAA1586 protein-coding 561_WT_peak_4568 chr20 17512049 17512241 + 66 NA promoter-TSS (NM_001195) promoter-TSS (NM_001195) -131 NM_001195 631 Hs.129702 NM_001195 HPRD:04494 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1, filensin protein-coding 561_WT_peak_7423 chr9 127951759 127952308 + 66 NA 5' UTR (NM_001123355, exon 1 of 8) 5' UTR (NM_001123355, exon 1 of 8) 185 NM_002721 5537 Hs.744091 NM_002721 HPRD:02141 PPP6C PP6|PP6C protein phosphatase 6, catalytic subunit protein-coding 561_WT_peak_2111 chr14 20774055 20774226 + 66 NA promoter-TSS (NM_138376) promoter-TSS (NM_138376) 13 NM_138376 91875 Hs.98553 NM_138376 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 561_WT_peak_808 chr1 235490646 235490840 + 66 NA promoter-TSS (NM_001206794) promoter-TSS (NM_001206794) 59 NM_001206794 51742 Hs.575782 NM_016374 HPRD:10661 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT rich interactive domain 4B (RBP1-like) protein-coding 561_WT_peak_7215 chr9 15510659 15510840 + 66 NA promoter-TSS (NM_021144) promoter-TSS (NM_021144) 254 NM_033222 11168 Hs.658434 NM_021144 HPRD:04688 PSIP1 DFS70|LEDGF|PAIP|PSIP2|p52|p75 PC4 and SFRS1 interacting protein 1 protein-coding 561_WT_peak_4011 chr2 29092983 29093212 + 66 NA promoter-TSS (NM_017910) promoter-TSS (NM_017910) 78 NM_017910 55006 Hs.468026 NM_017910 HPRD:07935 TRMT61B - tRNA methyltransferase 61 homolog B (S. cerevisiae) protein-coding 561_WT_peak_4172 chr2 86080196 86080545 + 66 NA intron (NM_001042437, intron 3 of 6) intron (NM_001042437, intron 3 of 6) 14423 NM_001042437 8869 Hs.415117 NM_003896 HPRD:05098 ST3GAL5 SATI|SIAT9|SIATGM3S|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 561_WT_peak_4985 chr3 4818569 4818856 + 66 NA intron (NM_001168272, intron 46 of 60) intron (NM_001168272, intron 46 of 60) -25438 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 561_WT_peak_5033 chr3 18782634 18782842 + 65 NA Intergenic Intergenic 296009 NR_125803 101927777 Hs.543235 NR_125803 SATB1-AS1 - SATB1 antisense RNA 1 ncRNA 561_WT_peak_3983 chr2 25016073 25016296 + 65 NA promoter-TSS (NM_024322) promoter-TSS (NM_024322) 9 NM_001199803 79172 Hs.731569 NM_024322 HPRD:14414 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 561_WT_peak_3563 chr19 1897432 1897778 + 65 NA Intergenic Intergenic -7766 NM_138422 113179 Hs.144980 NM_138422 HPRD:14000 ADAT3 FWP005|MRT36|MST121|MSTP121|S863-5|TAD3 adenosine deaminase, tRNA-specific 3 protein-coding 561_WT_peak_1913 chr12 124086579 124086756 + 65 NA promoter-TSS (NM_020936) promoter-TSS (NM_020936) -5 NM_020936 57696 Hs.286173 NM_020936 HPRD:13130 DDX55 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 protein-coding 561_WT_peak_4724 chr20 62289798 62289975 + 65 NA intron (NM_001283009, intron 1 of 34) CpG 723 NM_032957 51750 Hs.745057 NM_016434 HPRD:15281 RTEL1 C20orf41|DKCA4|DKCB5|NHL|RTEL regulator of telomere elongation helicase 1 protein-coding 561_WT_peak_5011 chr3 13053351 13053551 + 65 NA intron (NM_001134382, intron 1 of 14) intron (NM_001134382, intron 1 of 14) -44253 NM_014869 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 561_WT_peak_7614 chrX 133320745 133320947 + 65 NA Intergenic Intergenic -16538 NR_029523 406899 NR_029523 miRBase:MI0000113 MIR106A MIRN106A|mir-106 microRNA 106a ncRNA 561_WT_peak_2178 chr14 39572295 39572509 + 65 NA promoter-TSS (NM_006364) promoter-TSS (NM_006364) 35 NM_006364 10484 Hs.272927 NM_006364 HPRD:06714 SEC23A CLSD Sec23 homolog A (S. cerevisiae) protein-coding 561_WT_peak_7478 chr9 137283130 137283344 + 65 NA intron (NM_001291920, intron 1 of 9) intron (NM_001291920, intron 1 of 9) 11980 NR_039816 100616236 NR_039816 MIR4669 - microRNA 4669 ncRNA 561_WT_peak_2296 chr14 75714303 75714577 + 65 NA Intergenic Intergenic -31041 NM_005252 2353 Hs.25647 NM_005252 HPRD:01275 FOS AP-1|C-FOS|p55 FBJ murine osteosarcoma viral oncogene homolog protein-coding 561_WT_peak_6528 chr6 157375636 157375841 + 65 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -274873 NR_039676 100616154 NR_039676 miRBase:MI0016817 MIR4466 - microRNA 4466 ncRNA 561_WT_peak_787 chr1 231108709 231108927 + 65 NA intron (NM_024525, intron 1 of 22) intron (NM_024525, intron 1 of 22) 5800 NM_001122835 79573 Hs.424788 NM_024525 HPRD:15578 TTC13 - tetratricopeptide repeat domain 13 protein-coding 561_WT_peak_1382 chr11 66406114 66406404 + 65 NA intron (NM_002896, intron 1 of 3) CpG 171 NM_002896 5936 Hs.523822 NM_002896 HPRD:03982 RBM4 LARK|RBM4A|ZCCHC21|ZCRB3A RNA binding motif protein 4 protein-coding 561_WT_peak_6321 chr6 42358048 42358309 + 65 NA intron (NM_033502, intron 2 of 17) intron (NM_033502, intron 2 of 17) 61611 NM_001297573 55809 Hs.485392 NM_018415 HPRD:11647 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 561_WT_peak_4889 chr22 32057843 32058122 + 65 NA Intergenic CpG -31172 NM_014338 23761 Hs.420559 NM_014338 HPRD:17854 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 561_WT_peak_893 chr10 15139107 15139334 + 65 NA promoter-TSS (NM_006414) promoter-TSS (NM_006414) 41 NM_001265601 10557 Hs.94986 NM_006414 HPRD:09360 RPP38 - ribonuclease P/MRP 38kDa subunit protein-coding 561_WT_peak_2856 chr16 57635758 57636292 + 65 NA Intergenic L1ME2|LINE|L1 -17580 NM_001290142 9289 Hs.513633 NM_005682 HPRD:06824 GPR56 BFPP|BPPR|TM7LN4|TM7XN1 G protein-coupled receptor 56 protein-coding 561_WT_peak_3167 chr17 38255354 38255791 + 65 NA intron (NM_021724, intron 1 of 7) CpG 1406 NM_021724 9572 Hs.724 NM_021724 HPRD:03873 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1, group D, member 1 protein-coding 561_WT_peak_1307 chr11 60928870 60929076 + 65 NA promoter-TSS (NM_017966) promoter-TSS (NM_017966) -57 NM_017966 55048 Hs.523715 NM_017966 HPRD:15652 VPS37C - vacuolar protein sorting 37 homolog C (S. cerevisiae) protein-coding 561_WT_peak_2917 chr16 79349965 79350201 + 65 NA Intergenic Intergenic 284539 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 561_WT_peak_1150 chr10 115933706 115933891 + 65 NA TTS (NR_031747) TTS (NR_031747) 140 NR_031747 100302224 NR_031747 miRBase:MI0010629 MIR2110 hsa-mir-2110 microRNA 2110 ncRNA 561_WT_peak_1331 chr11 64038707 64038951 + 65 NA intron (NM_032989, intron 3 of 3) intron (NM_032989, intron 3 of 3) -12982 NM_001170726 56834 Hs.523763 NM_020155 HPRD:12600 GPR137 C11orf4|GPR137A|TM7SF1L1 G protein-coupled receptor 137 protein-coding 561_WT_peak_6127 chr6 24952208 24952397 + 65 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -16022 NM_001286445 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 561_WT_peak_363 chr1 110333456 110333648 + 65 NA Intergenic Intergenic -26908 NM_024526 79574 Hs.485352 NM_024526 HPRD:13277 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 561_WT_peak_5369 chr3 196159038 196159208 + 65 NA intron (NM_015562, intron 1 of 10) CpG 222 NM_015562 26043 Hs.518524 NM_015562 UBXN7 UBXD7 UBX domain protein 7 protein-coding 561_WT_peak_4215 chr2 97001257 97001563 + 65 NA promoter-TSS (NM_001281712) promoter-TSS (NM_001281712) -69 NM_001281711 23397 Hs.308045 NM_015341 HPRD:03820 NCAPH BRRN1|CAP-H non-SMC condensin I complex, subunit H protein-coding 561_WT_peak_3289 chr17 60143072 60143324 + 65 NA promoter-TSS (NM_005121) promoter-TSS (NM_005121) -555 NM_005121 9969 Hs.282678 NM_005121 HPRD:07229 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 561_WT_peak_1408 chr11 73490346 73490602 + 65 NA Intergenic Intergenic -8443 NM_016055 51642 Hs.503239 NM_016055 MRPL48 HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 561_WT_peak_2224 chr14 55804609 55804807 + 65 NA intron (NM_152231, intron 1 of 1) MIRb|SINE|MIR 65836 NM_152231 55030 Hs.525348 NM_017943 HPRD:16442 FBXO34 Fbx34 F-box protein 34 protein-coding 561_WT_peak_6198 chr6 27115293 27115495 + 65 NA promoter-TSS (NR_036096) promoter-TSS (NR_036096) -11 NR_036096 100422934 NR_036096 miRBase:MI0014167 MIR3143 - microRNA 3143 ncRNA 561_WT_peak_4124 chr2 69872214 69872303 + 65 NA Intergenic Intergenic -1281 NM_014911 22848 Hs.468878 NM_014911 AAK1 - AP2 associated kinase 1 protein-coding 561_WT_peak_7217 chr9 19102721 19103141 + 65 NA promoter-TSS (NM_001270890) promoter-TSS (NM_001270890) 9 NM_017645 54801 Hs.533468 NM_017645 HPRD:13302 HAUS6 Dgt6|FAM29A HAUS augmin-like complex, subunit 6 protein-coding 561_WT_peak_5360 chr3 188850295 188850482 + 65 NA Intergenic Intergenic -39375 NM_198485 285386 Hs.729544 NM_198485 HPRD:13451 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 561_WT_peak_6986 chr8 38244035 38244205 + 65 NA promoter-TSS (NM_001199660) promoter-TSS (NM_001199660) 161 NM_001199659 137994 Hs.696457 NM_144652 HPRD:08060 LETM2 - leucine zipper-EF-hand containing transmembrane protein 2 protein-coding 561_WT_peak_5455 chr4 40058496 40058666 + 65 NA promoter-TSS (NM_018177) promoter-TSS (NM_018177) 57 NM_018177 55728 Hs.391463 NM_018177 HPRD:11382 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 561_WT_peak_5138 chr3 58419335 58419510 + 65 NA non-coding (NR_033384, exon 1 of 9) non-coding (NR_033384, exon 1 of 9) 144 NR_033384 5162 Hs.161357 NM_000925 HPRD:01530 PDHB PDHBD|PDHE1-B|PHE1B pyruvate dehydrogenase (lipoamide) beta protein-coding 561_WT_peak_4170 chr2 85766309 85766636 + 65 NA promoter-TSS (NR_038942) promoter-TSS (NR_038942) 371 NM_005911 4144 Hs.516157 NM_005911 HPRD:03275 MAT2A MATA2|MATII|SAMS2 methionine adenosyltransferase II, alpha protein-coding 561_WT_peak_3727 chr19 36066495 36066674 + 65 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -12024 NM_000704 495 Hs.36992 NM_000704 HPRD:00668 ATP4A ATP6A ATPase, H+/K+ exchanging, alpha polypeptide protein-coding 561_WT_peak_2858 chr16 57683022 57683216 + 65 NA intron (NM_001290142, intron 2 of 13) intron (NM_001290142, intron 2 of 13) 9912 NM_001290144 9289 Hs.513633 NM_005682 HPRD:06824 GPR56 BFPP|BPPR|TM7LN4|TM7XN1 G protein-coupled receptor 56 protein-coding 561_WT_peak_2841 chr16 50776331 50776654 + 65 NA intron (NM_001042412, intron 1 of 17) CpG 463 NM_001042412 1540 Hs.578973 NM_015247 HPRD:05427 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 cylindromatosis (turban tumor syndrome) protein-coding 561_WT_peak_4142 chr2 73298637 73298843 + 65 NA exon (NM_144579, exon 1 of 14) exon (NM_144579, exon 1 of 14) 225 NM_144579 94097 Hs.368171 NM_144579 HPRD:18047 SFXN5 BBG-TCC sideroflexin 5 protein-coding 561_WT_peak_2979 chr17 2296644 2297038 + 65 NA intron (NM_020310, intron 4 of 5) CpG 7417 NM_020310 4335 Hs.626579 NM_020310 HPRD:04331 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 561_WT_peak_1737 chr12 57915885 57916387 + 65 NA promoter-TSS (NM_052897) promoter-TSS (NM_052897) -523 NM_052897 114785 Hs.524523 NM_052897 HPRD:11296 MBD6 - methyl-CpG binding domain protein 6 protein-coding 561_WT_peak_4825 chr22 18560364 18560916 + 65 NA promoter-TSS (NM_001199319) promoter-TSS (NM_001199319) -46 NM_017929 55670 Hs.517400 NM_017929 PEX26 PBD7A|PBD7B|PEX26M1T|Pex26pM1T peroxisomal biogenesis factor 26 protein-coding 561_WT_peak_4504 chr2 235199367 235199542 + 65 NA Intergenic Intergenic 206239 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 561_WT_peak_4439 chr2 202117335 202117548 + 65 NA intron (NM_033355, intron 2 of 9) intron (NM_033355, intron 2 of 9) -5313 NM_001080125 841 Hs.599762 NM_001228 HPRD:03459 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8, apoptosis-related cysteine peptidase protein-coding 561_WT_peak_3917 chr19 57988701 57988906 + 65 NA 5' UTR (NM_001144068, exon 1 of 4) 5' UTR (NM_001144068, exon 1 of 4) 135 NM_001144068 400720 Hs.388810 NM_001024596 HPRD:18624 ZNF772 - zinc finger protein 772 protein-coding 561_WT_peak_2951 chr16 89255510 89255750 + 65 NA intron (NM_004933, intron 7 of 13) (CA)n|Simple_repeat|Simple_repeat 10899 NM_001242757 146429 Hs.447544 NM_001242757 SLC22A31 - solute carrier family 22, member 31 protein-coding 561_WT_peak_1062 chr10 76585586 76585845 + 65 NA promoter-TSS (NM_001256468) promoter-TSS (NM_001256468) -456 NM_001256469 23522 Hs.35758 NM_012330 HPRD:07065 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf K(lysine) acetyltransferase 6B protein-coding 561_WT_peak_816 chr1 236687743 236688029 + 65 NA promoter-TSS (NR_034040) promoter-TSS (NR_034040) -78 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 561_WT_peak_887 chr10 12164820 12164992 + 65 NA 3' UTR (NM_018706, exon 17 of 17) 3' UTR (NM_018706, exon 17 of 17) -6734 NM_018144 55176 Hs.112955 NM_018144 HPRD:15317 SEC61A2 - Sec61 alpha 2 subunit (S. cerevisiae) protein-coding 561_WT_peak_4782 chr21 35789871 35790100 + 65 NA Intergenic HAL1-2a_MD|LINE|L1 -16615 NM_001282537 101928147 Hs.303798 NM_001282537 C21orf140 - chromosome 21 open reading frame 140 protein-coding 561_WT_peak_892 chr10 14880335 14880626 + 65 NA promoter-TSS (NM_001029954) promoter-TSS (NM_001029954) 321 NR_103464 51182 Hs.534169 NM_016299 HPRD:07021 HSPA14 HSP70-4|HSP70L1 heat shock 70kDa protein 14 protein-coding 561_WT_peak_336 chr1 99337014 99337255 + 65 NA Intergenic Intergenic -132698 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 561_WT_peak_7536 chrX 47518339 47518528 + 65 NA non-coding (NR_045559, exon 1 of 5) non-coding (NR_045559, exon 1 of 5) 146 NR_045560 8409 Hs.172791 NM_004182 HPRD:02209 UXT ART-27|STAP1 ubiquitously-expressed, prefoldin-like chaperone protein-coding 561_WT_peak_1059 chr10 75910555 75910648 + 65 NA promoter-TSS (NM_001202450) promoter-TSS (NM_001202450) 225 NM_012095 26985 Hs.500104 NM_012095 AP3M1 - adaptor-related protein complex 3, mu 1 subunit protein-coding 561_WT_peak_5603 chr4 140586982 140587176 + 65 NA 5' UTR (NM_001204368, exon 1 of 4) 5' UTR (NM_001204368, exon 1 of 4) 157 NM_002413 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 561_WT_peak_4461 chr2 209130240 209130594 + 65 NA promoter-TSS (NM_001178000) promoter-TSS (NM_001178000) -574 NM_152671 200576 Hs.744997 NM_015040 HPRD:17852 PIKFYVE CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29 phosphoinositide kinase, FYVE finger containing protein-coding 561_WT_peak_7157 chr8 132916493 132916788 + 65 NA intron (NM_015137, intron 1 of 22) CpG 284 NM_015137 23167 Hs.204564 NM_015137 HPRD:17179 EFR3A - EFR3 homolog A (S. cerevisiae) protein-coding 561_WT_peak_2852 chr16 57318258 57318457 + 65 NA exon (NM_015993, exon 1 of 4) exon (NM_015993, exon 1 of 4) 227 NM_015993 51090 Hs.632215 NM_015993 HPRD:11854 PLLP PMLP|TM4SF11 plasmolipin protein-coding 561_WT_peak_6722 chr7 75071699 75072257 + 65 NA intron (NM_001099415, intron 3 of 14) CpG 32373 NR_033322 155400 Hs.436034 NM_001039575 NSUN5P1 NSUN5B|WBSCR20B NOP2/Sun domain family, member 5 pseudogene 1 pseudo 561_WT_peak_6642 chr7 37488443 37488654 + 65 NA promoter-TSS (NM_014800) promoter-TSS (NM_014800) 7 NM_014800 9844 Hs.434989 NM_014800 HPRD:12102 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 561_WT_peak_2217 chr14 54976478 54976648 + 65 NA promoter-TSS (NM_006568) promoter-TSS (NM_006568) -24 NM_006568 10668 Hs.59106 NM_006568 HPRD:09366 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 561_WT_peak_5772 chr5 64858732 64858902 + 65 NA promoter-TSS (NM_001278929) promoter-TSS (NM_001278929) 178 NM_022145 64105 Hs.529778 NM_022145 HPRD:13323 CENPK AF5alpha|CENP-K|P33|Solt centromere protein K protein-coding 561_WT_peak_4346 chr2 161339289 161339473 + 65 NA intron (NM_016836, intron 1 of 13) intron (NM_016836, intron 1 of 13) 10937 NM_016836 5937 Hs.470412 NM_002897 HPRD:03814 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif, single stranded interacting protein 1 protein-coding 561_WT_peak_1893 chr12 121678365 121678630 + 65 NA 3' UTR (NM_006549, exon 17 of 17) 3' UTR (NM_006549, exon 17 of 17) 30833 NM_002560 5025 Hs.321709 NM_002560 HPRD:09017 P2RX4 P2X4|P2X4R purinergic receptor P2X, ligand-gated ion channel, 4 protein-coding 561_WT_peak_3050 chr17 16118570 16119399 + 65 NA promoter-TSS (NM_006311) promoter-TSS (NM_006311) -110 NM_006311 9611 Hs.462323 NM_006311 HPRD:02911 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 561_WT_peak_2446 chr15 42066510 42066835 + 65 NA promoter-TSS (NM_001265611) promoter-TSS (NM_001265611) 40 NR_049761 23005 Hs.513661 NM_014994 HPRD:17465 MAPKBP1 JNKBP-1 mitogen-activated protein kinase binding protein 1 protein-coding 561_WT_peak_5183 chr3 101546472 101546901 + 65 NA promoter-TSS (NM_001005474) promoter-TSS (NM_001005474) -148 NM_001005474 64332 Hs.319171 NM_031419 HPRD:09217 NFKBIZ IKBZ|INAP|MAIL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta protein-coding 561_WT_peak_3673 chr19 17236489 17236774 + 65 NA intron (NM_001130065, intron 2 of 39) intron (NM_001130065, intron 2 of 39) 50040 NM_004145 4650 Hs.123198 NM_004145 HPRD:03677 MYO9B CELIAC4|MYR5 myosin IXB protein-coding 561_WT_peak_5872 chr5 109025166 109025447 + 65 NA 5' UTR (NM_002372, exon 1 of 22) 5' UTR (NM_002372, exon 1 of 22) 239 NM_002372 4124 Hs.432822 NM_002372 HPRD:01110 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase, alpha, class 2A, member 1 protein-coding 561_WT_peak_5232 chr3 122785891 122786247 + 65 NA intron (NR_028444, intron 1 of 15) CpG 213 NR_028444 10954 Hs.477352 NM_006810 HPRD:08334 PDIA5 PDIR protein disulfide isomerase family A, member 5 protein-coding 561_WT_peak_5262 chr3 132440774 132440951 + 65 NA promoter-TSS (NR_002811) promoter-TSS (NR_002811) -324 NR_002811 348808 Hs.586111 NR_002811 ENSG00000248724 NPHP3-AS1 NCRNA00119 NPHP3 antisense RNA 1 ncRNA 561_WT_peak_2479 chr15 51057084 51057358 + 65 NA intron (NM_032802, intron 1 of 14) intron (NM_032802, intron 1 of 14) 689 NM_032802 84888 Hs.401537 NM_032802 HPRD:09742 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 561_WT_peak_3360 chr17 75386436 75386488 + 65 NA intron (NM_001113494, intron 1 of 10) intron (NM_001113494, intron 1 of 10) 6674 NR_036200 100422851 NR_036200 miRBase:MI0015845 MIR4316 - microRNA 4316 ncRNA 561_WT_peak_6202 chr6 27247981 27248326 + 65 NA Intergenic Intergenic 31858 NM_033482 94026 Hs.729955 NM_033482 ENSG00000158553 POM121L2 POM121-L|POM121L POM121 transmembrane nucleoporin-like 2 protein-coding 561_WT_peak_4950 chr22 42476214 42476285 + 65 NA TTS (NM_001002034) TTS (NM_001002034) 554 NM_033318 91689 Hs.306083 NM_033318 HPRD:12385 SMDT1 C22orf32|DDDD|EMRE|dJ186O1.1 single-pass membrane protein with aspartate-rich tail 1 protein-coding 561_WT_peak_4957 chr22 43253066 43253238 + 65 NA exon (NM_014570, exon 1 of 16) exon (NM_014570, exon 1 of 16) 256 NM_001142293 26286 Hs.685225 NM_014570 HPRD:06444 ARFGAP3 ARFGAP1 ADP-ribosylation factor GTPase activating protein 3 protein-coding 561_WT_peak_2970 chr17 1466227 1466422 + 65 NA promoter-TSS (NM_006224) promoter-TSS (NM_006224) -214 NM_006224 5306 Hs.429819 NM_006224 HPRD:02548 PITPNA HEL-S-36|PI-TPalpha|PITPN|VIB1A phosphatidylinositol transfer protein, alpha protein-coding 561_WT_peak_6055 chr5 180600516 180600710 + 65 NA Intergenic Intergenic 18295 NR_108031 102577426 Hs.277359 NR_108031 LOC102577426 - uncharacterized LOC102577426 ncRNA 561_WT_peak_7571 chrX 70331242 70331452 + 65 NA exon (NM_000206, exon 1 of 8) exon (NM_000206, exon 1 of 8) 134 NM_000206 3561 Hs.84 NM_000206 HPRD:02391 IL2RG CD132|CIDX|IL-2RG|IMD4|P64|SCIDX|SCIDX1 interleukin 2 receptor, gamma protein-coding 561_WT_peak_5282 chr3 142297376 142298056 + 65 NA promoter-TSS (NM_001184) promoter-TSS (NM_001184) -48 NM_001184 545 Hs.271791 NM_001184 HPRD:08369 ATR FCTCS|FRP1|MEC1|SCKL|SCKL1 ATR serine/threonine kinase protein-coding 561_WT_peak_5501 chr4 74124327 74124513 + 65 NA promoter-TSS (NM_198889) promoter-TSS (NM_198889) 82 NM_032217 26057 Hs.601206 NM_032217 HPRD:10648 ANKRD17 GTAR|NY-BR-16 ankyrin repeat domain 17 protein-coding 561_WT_peak_6632 chr7 30387742 30387946 + 65 NA intron (NM_147128, intron 2 of 4) intron (NM_147128, intron 2 of 4) -21822 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 561_WT_peak_6117 chr6 18155068 18155284 + 65 NA promoter-TSS (NM_153042) promoter-TSS (NM_153042) 220 NM_000367 7172 Hs.444319 NM_000367 HPRD:01760 TPMT - thiopurine S-methyltransferase protein-coding 561_WT_peak_945 chr10 32734692 32735100 + 65 NA promoter-TSS (NM_145023) promoter-TSS (NM_145023) 88 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 561_WT_peak_4018 chr2 32235972 32236160 + 65 NA promoter-TSS (NM_015955) promoter-TSS (NM_015955) -368 NM_001137602 51072 Hs.444969 NM_015955 HPRD:12814 MEMO1 C2orf4|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 561_WT_peak_590 chr1 161439949 161440229 + 65 NA Intergenic CpG -35116 NM_021642 2212 Hs.352642 NM_021642 HPRD:00906 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding 561_WT_peak_7607 chrX 119738412 119738618 + 65 NA promoter-TSS (NM_001137554) promoter-TSS (NM_001137554) -37 NM_001137554 28985 Hs.102696 NM_014060 MCTS1 MCT-1|MCT1 malignant T cell amplified sequence 1 protein-coding 561_WT_peak_2878 chr16 68390348 68390674 + 65 NA intron (NM_001290018, intron 17 of 18) intron (NM_001290018, intron 17 of 18) 45494 NM_001290018 54496 Hs.653193 NM_019023 HPRD:15174 PRMT7 - protein arginine methyltransferase 7 protein-coding 561_WT_peak_1607 chr12 12764485 12764939 + 65 NA promoter-TSS (NM_001310) promoter-TSS (NM_001310) -55 NM_001310 1389 Hs.591156 NM_001310 HPRD:07541 CREBL2 - cAMP responsive element binding protein-like 2 protein-coding 561_WT_peak_7143-2 chr8 126164420 126164444 + 65 NA intron (NM_173685, intron 4 of 7) intron (NM_173685, intron 4 of 7) 60349 NM_173685 286053 Hs.388297 NM_173685 HPRD:08131 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 non-SMC element 2, MMS21 homolog (S. cerevisiae) protein-coding 561_WT_peak_6227 chr6 27833862 27834125 + 65 NA TTS (NM_003511) TTS (NM_003511) 886 NM_003511 8332 Hs.233568 NM_003511 HPRD:09103 HIST1H2AL H2A.i|H2A/i|H2AFI|dJ193B12.9 histone cluster 1, H2al protein-coding 561_WT_peak_3503 chr18 47340479 47340795 + 65 NA promoter-TSS (NM_006111) promoter-TSS (NM_006111) 244 NR_117096 103091864 Hs.646459 NR_117096 SNHG22 SCARNA17HG small nucleolar RNA host gene 22 (non-protein coding) ncRNA 561_WT_peak_5679 chr5 32444328 32444601 + 65 NA intron (NM_016107, intron 1 of 19) CpG-20616 380 NM_016107 51663 Hs.435231 NM_016107 HPRD:15730 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 561_WT_peak_7143 chr8 126164202 126164236 + 65 NA intron (NM_173685, intron 4 of 7) intron (NM_173685, intron 4 of 7) 60136 NM_173685 286053 Hs.388297 NM_173685 HPRD:08131 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 non-SMC element 2, MMS21 homolog (S. cerevisiae) protein-coding 561_WT_peak_767 chr1 228594048 228594348 + 65 NA exon (NM_145214, exon 1 of 6) exon (NM_145214, exon 1 of 6) 319 NM_145214 81559 Hs.13543 NM_145214 HPRD:07429 TRIM11 BIA1|RNF92 tripartite motif containing 11 protein-coding 561_WT_peak_1502 chr11 118306952 118307210 + 65 NA promoter-TSS (NM_005933) promoter-TSS (NM_005933) -124 NM_001197104 4297 Hs.258855 NM_005933 HPRD:01162 KMT2A ALL-1|CXXC7|HRX|HTRX1|MLL|MLL/GAS7|MLL1|MLL1A|TET1-MLL|TRX1|WDSTS lysine (K)-specific methyltransferase 2A protein-coding 561_WT_peak_2788 chr16 30672041 30672323 + 64 NA Intergenic L2c|LINE|L2 -3596 NM_001105079 64319 Hs.247186 NM_022452 HPRD:16354 FBRS FBS|FBS1 fibrosin protein-coding 561_WT_peak_3390 chr17 79818990 79819165 + 64 NA promoter-TSS (NM_000918) promoter-TSS (NM_000918) -533 NM_000918 5034 Hs.464336 NM_000918 HPRD:07181 P4HB DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB prolyl 4-hydroxylase, beta polypeptide protein-coding 561_WT_peak_2335 chr14 91882556 91882752 + 64 NA intron (NM_001080414, intron 2 of 29) intron (NM_001080414, intron 2 of 29) 1534 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 561_WT_peak_4596 chr20 30310645 30310820 + 64 NA promoter-TSS (NM_001191) promoter-TSS (NM_001191) -76 NM_001191 598 Hs.516966 NM_001191 HPRD:02497 BCL2L1 BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS BCL2-like 1 protein-coding 561_WT_peak_6977 chr8 37739534 37739727 + 64 NA intron (NM_001002814, intron 1 of 5) intron (NM_001002814, intron 1 of 5) 17385 NM_025151 80223 Hs.191179 NM_025151 HPRD:09787 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 (class I) protein-coding 561_WT_peak_2661 chr16 2732366 2732566 + 64 NA promoter-TSS (NM_018992) promoter-TSS (NM_018992) -29 NM_018992 54442 Hs.61960 NM_018992 HPRD:13768 KCTD5 - potassium channel tetramerization domain containing 5 protein-coding 561_WT_peak_1474 chr11 107992663 107992786 + 64 NA intron (NM_000019, intron 1 of 11) CpG 466 NM_000019 38 Hs.232375 NM_000019 HPRD:01946 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 561_WT_peak_7251 chr9 35814762 35814941 + 64 NA intron (NM_032593, intron 1 of 4) CpG 191 NM_032593 84681 Hs.70573 NM_032593 HPRD:17106 HINT2 HIT-17 histidine triad nucleotide binding protein 2 protein-coding 561_WT_peak_2308 chr14 78108209 78108588 + 64 NA Intergenic CpG -25288 NM_004863 9517 Hs.435661 NM_004863 HPRD:05755 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase, long chain base subunit 2 protein-coding 561_WT_peak_1688 chr12 49658872 49659146 + 64 NA intron (NM_032704, intron 1 of 3) CpG 144 NM_032704 84790 Hs.652390 NM_032704 HPRD:06747 TUBA1C TUBA6|bcm948 tubulin, alpha 1c protein-coding 561_WT_peak_4937 chr22 41488437 41488626 + 64 NA promoter-TSS (NR_031694) promoter-TSS (NR_031694) 14 NR_031694 100302237 NR_031694 miRBase:MI0006428 MIR1281 MIRN1281|hsa-mir-1281 microRNA 1281 ncRNA 561_WT_peak_7397 chr9 116108122 116108242 + 64 NA Intergenic LTR54|LTR|ERV1 -3630 NM_017688 54836 Hs.614517 NM_017688 HPRD:16566 BSPRY - B-box and SPRY domain containing protein-coding 561_WT_peak_5578 chr4 110480847 110481188 + 64 NA promoter-TSS (NM_017918) promoter-TSS (NM_017918) -338 NM_017918 55013 Hs.234149 NM_017918 CCDC109B EMRE|MCUb coiled-coil domain containing 109B protein-coding 561_WT_peak_4531 chr2 242641000 242641176 + 64 NA promoter-TSS (NM_032329) promoter-TSS (NM_032329) -368 NM_032329 84289 Hs.529172 NM_032329 HPRD:16348 ING5 p28ING5 inhibitor of growth family, member 5 protein-coding 561_WT_peak_7348 chr9 94877840 94878156 + 64 NA promoter-TSS (NM_001281303) promoter-TSS (NM_001281303) -242 NM_001281303 10558 Hs.90458 NM_006415 HPRD:05754 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase, long chain base subunit 1 protein-coding 561_WT_peak_149 chr1 31191684 31191965 + 64 NA non-coding (NR_034182, exon 1 of 4) non-coding (NR_034182, exon 1 of 4) 205 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 561_WT_peak_6119 chr6 18264982 18265188 + 64 NA promoter-TSS (NM_001134709) promoter-TSS (NM_001134709) -286 NM_001134709 7913 Hs.484813 NM_003472 HPRD:00503 DEK D6S231E DEK proto-oncogene protein-coding 561_WT_peak_5023 chr3 15352370 15352540 + 64 NA intron (NM_001018009, intron 2 of 8) intron (NM_001018009, intron 2 of 8) 21681 NM_004844 9467 Hs.257761 NM_004844 HPRD:12030 SH3BP5 SAB|SH3BP-5 SH3-domain binding protein 5 (BTK-associated) protein-coding 561_WT_peak_44 chr1 8877535 8877702 + 64 NA promoter-TSS (NM_001042681) promoter-TSS (NM_001042681) 81 NM_012102 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 561_WT_peak_5840 chr5 81267898 81268082 + 64 NA 5' UTR (NM_001131028, exon 1 of 9) 5' UTR (NM_001131028, exon 1 of 9) 146 NM_001131028 83734 Hs.713698 NM_031482 HPRD:16497 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 561_WT_peak_1102 chr10 96059371 96059579 + 64 NA intron (NM_001288989, intron 24 of 32) intron (NM_001288989, intron 24 of 32) -12648 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 561_WT_peak_6043 chr5 179051003 179051482 + 64 NA promoter-TSS (NM_005520) promoter-TSS (NM_005520) -520 NM_005520 3187 Hs.604001 NM_005520 HPRD:03021 HNRNPH1 HNRPH|HNRPH1|hnRNPH heterogeneous nuclear ribonucleoprotein H1 (H) protein-coding 561_WT_peak_2555 chr15 75494182 75494395 + 64 NA promoter-TSS (NM_015492) promoter-TSS (NM_015492) 67 NM_015492 56905 Hs.17936 NM_015492 HPRD:13154 C15orf39 - chromosome 15 open reading frame 39 protein-coding 561_WT_peak_1044 chr10 74094820 74095034 + 64 NA 3' UTR (NM_001002762, exon 8 of 8) 3' UTR (NM_001002762, exon 8 of 8) 19980 NM_001002762 54788 Hs.500013 NM_017626 HPRD:07086 DNAJB12 DJ10 DnaJ (Hsp40) homolog, subfamily B, member 12 protein-coding 561_WT_peak_5324 chr3 171850150 171850342 + 64 NA intron (NM_001135095, intron 2 of 25) AluSx1|SINE|Alu 91902 NM_001135095 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 561_WT_peak_5301 chr3 156893166 156893179 + 64 NA Intergenic Intergenic -14690 NM_020307 57018 Hs.4859 NM_020307 CCNL1 ANIA6A|PRO1073|ania-6a cyclin L1 protein-coding 561_WT_peak_3006 chr17 6555226 6555413 + 64 NA promoter-TSS (NM_016060) promoter-TSS (NM_016060) 260 NM_001105520 388327 Hs.262480 NM_001105520 C17orf100 - chromosome 17 open reading frame 100 protein-coding 561_WT_peak_6944 chr8 22497201 22497322 + 64 NA TTS (NR_027715) TTS (NR_027715) 2461 NR_027715 80094 Hs.675917 NM_025026 BIN3-IT1 - BIN3 intronic transcript 1 (non-protein coding) ncRNA 561_WT_peak_2554 chr15 75359495 75359679 + 64 NA Intergenic HERVP71A-int|LTR|ERV1 23977 NM_001301105 60490 Hs.458922 NM_021823 HPRD:14377 PPCDC PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 561_WT_peak_2965 chr17 900352 900530 + 64 NA promoter-TSS (NM_013337) promoter-TSS (NM_013337) 84 NM_013337 29928 Hs.745034 NM_013337 TIMM22 TEX4|TIM22 translocase of inner mitochondrial membrane 22 homolog (yeast) protein-coding 561_WT_peak_3459 chr18 20513837 20514008 + 64 NA promoter-TSS (NM_203292) promoter-TSS (NM_203292) 83 NM_203291 5932 Hs.546282 NM_002894 HPRD:04990 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 retinoblastoma binding protein 8 protein-coding 561_WT_peak_79 chr1 16971048 16971370 + 64 NA promoter-TSS (NR_027504) promoter-TSS (NR_027504) -860 NR_027504 11209 Hs.349110 NR_027504 ENSG00000186301 MST1P2 MSPL-1|MSPL-2|MSPL-3|MSPL1|MSPL2|MSPL3|MSTP1|MSTP2|MSTP3 macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2 pseudo 561_WT_peak_3722 chr19 34895159 34895394 + 64 NA promoter-TSS (NM_032346) promoter-TSS (NM_032346) -27 NM_032346 84306 Hs.515344 NM_032346 HPRD:17480 PDCD2L - programmed cell death 2-like protein-coding 561_WT_peak_3770 chr19 41283177 41283367 + 63 NA promoter-TSS (NR_037791) promoter-TSS (NR_037791) -852 NM_016154 53916 Hs.631539 NM_016154 HPRD:11473 RAB4B - RAB4B, member RAS oncogene family protein-coding 561_WT_peak_2545 chr15 72754628 72754845 + 63 NA Intergenic AluSz6|SINE|Alu -11931 NM_005744 25820 Hs.268787 NM_005744 HPRD:05730 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 561_WT_peak_7452 chr9 132220544 132220733 + 63 NA Intergenic Intergenic -30301 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 561_WT_peak_7139-2 chr8 125551092 125551111 + 63 NA promoter-TSS (NM_005005) promoter-TSS (NM_005005) 228 NM_001146160 83940 Hs.170568 NM_032026 HPRD:11621 TATDN1 - TatD DNase domain containing 1 protein-coding 561_WT_peak_4544 chr20 2633374 2633737 + 63 NA TTS (NR_031699) TTS (NR_031699) 132 NR_031699 100302138 NR_031699 MIR1292 MIRN1292|hsa-mir-1292 microRNA 1292 ncRNA 561_WT_peak_1953 chr13 24463572 24463707 + 63 NA promoter-TSS (NM_001135816) promoter-TSS (NM_001135816) 47 NM_001135816 542767 Hs.642624 NM_001014442 C1QTNF9B-AS1 PCOTH C1QTNF9B antisense RNA 1 protein-coding 561_WT_peak_6738 chr7 77325775 77326037 + 63 NA non-coding (NR_038361, exon 1 of 3) non-coding (NR_038361, exon 1 of 3) 163 NM_198467 222194 Hs.72451 NM_198467 RSBN1L - round spermatid basic protein 1-like protein-coding 561_WT_peak_3601 chr19 7616269 7616489 + 63 NA intron (NM_001166114, intron 18 of 31) intron (NM_001166114, intron 18 of 31) 15790 NM_001166114 10908 Hs.631863 NM_006702 HPRD:04432 PNPLA6 BNHS|NTE|NTEMND|SPG39|iPLA2delta|sws patatin-like phospholipase domain containing 6 protein-coding 561_WT_peak_552 chr1 155830083 155830463 + 63 NA intron (NM_152280, intron 1 of 3) CpG 1013 NM_152280 23208 Hs.32984 NM_152280 HPRD:12289 SYT11 SYT12|sytXI synaptotagmin XI protein-coding 561_WT_peak_4903 chr22 37518060 37518239 + 63 NA Intergenic Intergenic -12546 NM_001289000 164656 Hs.370885 NM_153609 HPRD:10270 TMPRSS6 IRIDA transmembrane protease, serine 6 protein-coding 561_WT_peak_3571 chr19 2478793 2478996 + 63 NA TTS (NM_015675) TTS (NM_015675) 2771 NM_015675 4616 Hs.110571 NM_015675 HPRD:05382 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 561_WT_peak_7161 chr8 134029418 134029645 + 63 NA intron (NM_003235, intron 37 of 47) MER46C|DNA|TcMar-Tigger 29295 NR_107002 102466865 NR_107002 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 561_WT_peak_4395 chr2 191272457 191272633 + 63 NA promoter-TSS (NM_017694) promoter-TSS (NM_017694) -536 NM_017694 54842 Hs.418581 NM_017694 HPRD:13369 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 561_WT_peak_1859 chr12 111843877 111844091 + 63 NA 5' UTR (NM_005475, exon 1 of 8) 5' UTR (NM_005475, exon 1 of 8) 232 NM_005475 10019 Hs.506784 NM_005475 HPRD:05480 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 561_WT_peak_809 chr1 235656192 235656551 + 63 NA intron (NM_001277155, intron 3 of 7) L2a|LINE|L2 11410 NM_001277155 148789 Hs.498143 NM_152490 HPRD:16533 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 561_WT_peak_5762-2 chr5 56206033 56206144 + 63 NA intron (NM_001171990, intron 1 of 5) CpG 1001 NM_153706 133383 Hs.85950 NM_153706 HPRD:14572 SETD9 C5orf35 SET domain containing 9 protein-coding 561_WT_peak_739 chr1 223403646 223403975 + 63 NA intron (NM_017982, intron 5 of 8) intron (NM_017982, intron 5 of 8) -87186 NM_003268 7100 Hs.604542 NM_003268 HPRD:04326 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll-like receptor 5 protein-coding 561_WT_peak_5950 chr5 138897503 138897939 + 63 NA Intergenic CpG -35378 NM_198282 340061 Hs.379754 NM_198282 TMEM173 ERIS|MITA|MPYS|NET23|SAVI|STING transmembrane protein 173 protein-coding 561_WT_peak_5865 chr5 102594802 102595072 + 63 NA intron (NM_033211, intron 1 of 2) CpG 495 NM_033211 90355 Hs.482976 NM_033211 HPRD:12383 C5orf30 - chromosome 5 open reading frame 30 protein-coding 561_WT_peak_1901 chr12 122326410 122326617 + 63 NA promoter-TSS (NM_001261400) promoter-TSS (NM_001261400) 4 NM_001171993 3242 Hs.2899 NM_002150 HPRD:02041 HPD 4-HPPD|4HPPD|GLOD3|HPPDASE|PPD 4-hydroxyphenylpyruvate dioxygenase protein-coding 561_WT_peak_2485 chr15 52311278 52311561 + 63 NA promoter-TSS (NM_002748) promoter-TSS (NM_002748) 8 NM_002748 5597 Hs.411847 NM_002748 HPRD:04213 MAPK6 ERK3|HsT17250|PRKM6|p97MAPK mitogen-activated protein kinase 6 protein-coding 561_WT_peak_6778 chr7 100027652 100027842 + 63 NA exon (NM_019606, exon 1 of 4) exon (NM_019606, exon 1 of 4) 493 NM_019606 56257 Hs.178011 NM_019606 HPRD:07889 MEPCE BCDIN3 methylphosphate capping enzyme protein-coding 561_WT_peak_3544 chr19 488962 489140 + 63 NA Intergenic CpG -7439 NM_130760 8174 Hs.102598 NM_130760 HPRD:00035 MADCAM1 MACAM1 mucosal vascular addressin cell adhesion molecule 1 protein-coding 561_WT_peak_1800 chr12 93772209 93772503 + 63 NA promoter-TSS (NR_040096) promoter-TSS (NR_040096) 30 NM_001301023 11163 Hs.506325 NM_019094 HPRD:14850 NUDT4 DIPP2|DIPP2alpha|DIPP2beta nudix (nucleoside diphosphate linked moiety X)-type motif 4 protein-coding 561_WT_peak_2949 chr16 89252799 89252991 + 63 NA intron (NM_004933, intron 5 of 13) L2b|LINE|L2 13634 NM_001242757 146429 Hs.447544 NM_001242757 SLC22A31 - solute carrier family 22, member 31 protein-coding 561_WT_peak_7175 chr8 144108114 144108289 + 63 NA Intergenic Intergenic 8299 NM_002346 4061 Hs.521903 NM_002346 HPRD:03227 LY6E RIG-E|RIGE|SCA-2|SCA2|TSA-1 lymphocyte antigen 6 complex, locus E protein-coding 561_WT_peak_292 chr1 76190355 76190533 + 63 NA 5' UTR (NM_000016, exon 1 of 12) 5' UTR (NM_000016, exon 1 of 12) 412 NM_001286042 34 Hs.445040 NM_000016 HPRD:08447 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase, C-4 to C-12 straight chain protein-coding 561_WT_peak_5379 chr3 197687160 197687433 + 63 NA promoter-TSS (NM_032263) promoter-TSS (NM_032263) 225 NM_033029 89782 Hs.518540 NM_033029 HPRD:07023 LMLN GP63|INV|IX14|MSP leishmanolysin-like (metallopeptidase M8 family) protein-coding 561_WT_peak_7163 chr8 134511376 134511535 + 63 NA intron (NM_173344, intron 2 of 9) MIRb|SINE|MIR 72728 NM_173344 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 561_WT_peak_7247 chr9 34637272 34637462 + 63 NA exon (NM_147157, exon 2 of 3) exon (NM_147157, exon 2 of 3) 456 NR_104108 10280 Hs.522087 NM_005866 HPRD:03580 SIGMAR1 ALS16|OPRS1|SIG-1R|SR-BP|SR-BP1|SRBP|hSigmaR1|sigma1R sigma non-opioid intracellular receptor 1 protein-coding 561_WT_peak_2680 chr16 4304073 4304269 + 63 NA promoter-TSS (NR_039999) promoter-TSS (NR_039999) -381 NR_039999 100507501 Hs.632979 NR_039999 ENSG00000262468 LOC100507501 - uncharacterized LOC100507501 ncRNA 561_WT_peak_1660 chr12 46064269 46064472 + 63 NA Intergenic Intergenic 57334 NR_028408 400027 Hs.597122 NR_028408 ENSG00000273015 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 561_WT_peak_3392 chr17 79935412 79935662 + 63 NA exon (NM_024083, exon 1 of 16) exon (NM_024083, exon 1 of 16) 111 NM_001251888 79058 Hs.298351 NM_024083 HPRD:06947 ASPSCR1 ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9 alveolar soft part sarcoma chromosome region, candidate 1 protein-coding 561_WT_peak_4907 chr22 37881102 37881423 + 63 NA intron (NM_002405, intron 1 of 7) intron (NM_002405, intron 1 of 7) 1163 NM_001166343 4242 Hs.517603 NM_002405 HPRD:03988 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 561_WT_peak_177 chr1 36184544 36184966 + 63 NA promoter-TSS (NM_152374) promoter-TSS (NM_152374) 35 NM_152374 127703 Hs.112023 NM_152374 HPRD:08798 C1orf216 - chromosome 1 open reading frame 216 protein-coding 561_WT_peak_4315 chr2 136633392 136633591 + 63 NA intron (NM_005915, intron 1 of 16) CpG 556 NM_005915 4175 Hs.444118 NM_005915 HPRD:03485 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 561_WT_peak_5994 chr5 156347516 156347694 + 63 NA intron (NM_138379, intron 7 of 8) intron (NM_138379, intron 7 of 8) 42661 NM_138379 91937 Hs.334907 NM_138379 HPRD:15508 TIMD4 SMUCKLER|TIM4 T-cell immunoglobulin and mucin domain containing 4 protein-coding 561_WT_peak_5923 chr5 133984078 133984540 + 63 NA promoter-TSS (NM_001252231) promoter-TSS (NM_001252231) -166 NM_001252231 10802 Hs.595540 NM_021982 ENSG00000113615 SEC24A - SEC24 family member A protein-coding 561_WT_peak_5909 chr5 131892514 131892805 + 63 NA promoter-TSS (NM_005732) promoter-TSS (NM_005732) 43 NM_005732 10111 Hs.633509 NM_005732 HPRD:04950 RAD50 NBSLD|RAD502|hRad50 RAD50 homolog (S. cerevisiae) protein-coding 561_WT_peak_620 chr1 172608308 172608486 + 63 NA Intergenic Intergenic -19788 NM_000639 356 Hs.2007 NM_000639 HPRD:00610 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6 Fas ligand (TNF superfamily, member 6) protein-coding 561_WT_peak_6071 chr6 392979 393261 + 63 NA non-coding (NR_046000, exon 2 of 10) non-coding (NR_046000, exon 2 of 10) 1381 NM_002460 3662 Hs.401013 NM_002460 HPRD:03543 IRF4 LSIRF|MUM1|NF-EM5 interferon regulatory factor 4 protein-coding 561_WT_peak_6114 chr6 16713117 16713130 + 63 NA intron (NM_001128164, intron 2 of 7) intron (NM_001128164, intron 2 of 7) 48598 NM_001128164 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 561_WT_peak_5732 chr5 43557066 43557263 + 63 NA promoter-TSS (NM_182789) promoter-TSS (NM_182789) 31 NM_182789 10605 Hs.482038 NM_006451 HPRD:05539 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 561_WT_peak_5762 chr5 56205888 56205892 + 63 NA intron (NM_001171990, intron 1 of 5) CpG 803 NM_153706 133383 Hs.85950 NM_153706 HPRD:14572 SETD9 C5orf35 SET domain containing 9 protein-coding 561_WT_peak_6997 chr8 42034831 42035119 + 63 NA intron (NM_000930, intron 13 of 13) intron (NM_000930, intron 13 of 13) 24511 NM_006803 10947 Hs.654529 NM_006803 HPRD:09801 AP3M2 AP47B|CLA20|P47B adaptor-related protein complex 3, mu 2 subunit protein-coding 561_WT_peak_4658 chr20 46118191 46118438 + 63 NA Intergenic AluJr|SINE|Alu -12287 NM_001174087 8202 Hs.592142 NM_006534 HPRD:03570 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 561_WT_peak_3237 chr17 47419644 47419795 + 63 NA intron (NM_014897, intron 1 of 5) intron (NM_014897, intron 1 of 5) -18808 NR_110884 102724596 Hs.559253 NR_110882 LOC102724596 - uncharacterized LOC102724596 ncRNA 561_WT_peak_2113 chr14 21077424 21077640 + 63 NA Intergenic tRNA-Pro-CCY|tRNA|tRNA -18550 NM_001024822 493901 Hs.729466 NM_001024822 HPRD:18667 RNASE12 HEL-S-85p|RAI1 ribonuclease, RNase A family, 12 (non-active) protein-coding 561_WT_peak_2937 chr16 87425447 87425656 + 63 NA promoter-TSS (NM_022818) promoter-TSS (NM_022818) 162 NM_001282683 79791 Hs.567582 NM_024735 FBXO31 FBX14|FBXO14|Fbx31|pp2386 F-box protein 31 protein-coding 561_WT_peak_7535 chrX 47420601 47420787 + 63 NA intron (NM_001256196, intron 1 of 15) CpG 195 NM_001256196 369 Hs.446641 NM_001654 HPRD:02405 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 561_WT_peak_641 chr1 181002337 181002528 + 63 NA promoter-TSS (NM_001531) promoter-TSS (NM_001531) -129 NM_001195035 3140 Hs.13500 NM_001531 HPRD:09012 MR1 HLALS major histocompatibility complex, class I-related protein-coding 561_WT_peak_7139 chr8 125550818 125550942 + 63 NA promoter-TSS (NM_005005) promoter-TSS (NM_005005) 449 NM_001146160 83940 Hs.170568 NM_032026 HPRD:11621 TATDN1 - TatD DNase domain containing 1 protein-coding 561_WT_peak_4672 chr20 48293515 48293739 + 63 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 36794 NM_004776 9334 Hs.370487 NM_004776 HPRD:06807 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 protein-coding 561_WT_peak_3980 chr2 21022490 21022759 + 63 NA intron (NM_001282723, intron 1 of 5) CpG 266 NM_001282723 60526 Hs.187823 NM_021925 HPRD:07113 C2orf43 - chromosome 2 open reading frame 43 protein-coding 561_WT_peak_4367 chr2 172864846 172865084 + 63 NA intron (NM_199227, intron 1 of 9) CpG 161 NM_199227 254042 Hs.298250 NM_199227 METAP1D MAP 1D|MAP1D|MetAP 1D|Metap1l methionyl aminopeptidase type 1D (mitochondrial) protein-coding 561_WT_peak_6060 chr5 180634663 180634945 + 63 NA Intergenic tRNA-Lys-AAG|tRNA|tRNA -2511 NM_203293 81786 Hs.487412 NM_033342 HPRD:11648 TRIM7 GNIP|RNF90 tripartite motif containing 7 protein-coding 561_WT_peak_568 chr1 158978725 158978932 + 63 NA promoter-TSS (NM_005531) promoter-TSS (NM_005531) -854 NM_005531 3428 Hs.380250 NM_005531 HPRD:00969 IFI16 IFNGIP1|PYHIN2 interferon, gamma-inducible protein 16 protein-coding 561_WT_peak_3060 chr17 18161758 18161994 + 63 NA promoter-TSS (NM_001256264) promoter-TSS (NM_001256264) -6 NM_001256264 2314 Hs.513984 NM_002018 HPRD:02647 FLII FLI|FLIL|Fli1 flightless I homolog (Drosophila) protein-coding 561_WT_peak_7465 chr9 134270155 134270352 + 63 NA Intergenic Intergenic -35224 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline-rich coiled-coil 2B protein-coding 561_WT_peak_674 chr1 200638776 200639073 + 63 NA 5' UTR (NM_001031725, exon 1 of 8) 5' UTR (NM_001031725, exon 1 of 8) 202 NM_001031725 83479 Hs.497332 NM_031306 HPRD:10893 DDX59 OFD5|ZNHIT5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 protein-coding 561_WT_peak_7499 chrX 9431036 9431427 + 63 NA promoter-TSS (NM_001139467) promoter-TSS (NM_001139467) -104 NM_001139468 6907 Hs.495656 NM_005647 HPRD:02183 TBL1X EBI|SMAP55|TBL1 transducin (beta)-like 1X-linked protein-coding 561_WT_peak_92 chr1 20126848 20127090 + 63 NA promoter-TSS (NM_181719) promoter-TSS (NM_181719) -559 NM_181719 255104 Hs.656313 NM_181719 HPRD:14140 TMCO4 - transmembrane and coiled-coil domains 4 protein-coding 561_WT_peak_1801 chr12 93793094 93793263 + 63 NA non-coding (NR_002212, exon 5 of 5) non-coding (NR_002212, exon 5 of 5) 20852 NM_001301023 11163 Hs.506325 NM_019094 HPRD:14850 NUDT4 DIPP2|DIPP2alpha|DIPP2beta nudix (nucleoside diphosphate linked moiety X)-type motif 4 protein-coding 561_WT_peak_5390 chr4 1714383 1714723 + 63 NA promoter-TSS (NM_006527) promoter-TSS (NM_006527) -523 NM_006527 7884 Hs.298345 NM_006527 HPRD:03884 SLBP HBP stem-loop binding protein protein-coding 561_WT_peak_4102 chr2 64450319 64450493 + 63 NA Intergenic Intergenic -5129 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 561_WT_peak_5169 chr3 98274797 98275311 + 63 NA Intergenic Intergenic 24311 NM_005290 2838 Hs.563128 NM_005290 HPRD:03102 GPR15 BOB G protein-coupled receptor 15 protein-coding 561_WT_peak_2911 chr16 75550836 75551083 + 63 NA Intergenic CpG 18109 NM_024533 23563 Hs.745424 NM_012126 HPRD:07059 CHST5 I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 protein-coding 561_WT_peak_2612 chr15 91565836 91566051 + 63 NA promoter-TSS (NM_018668) promoter-TSS (NM_018668) 91 NR_110104 101926911 Hs.459366 NR_110104 ENSG00000214432 LOC101926911 - uncharacterized LOC101926911 ncRNA 561_WT_peak_5504 chr4 76981004 76981218 + 63 NA intron (NM_001130017, intron 1 of 9) intron (NM_001130017, intron 1 of 9) -14737 NM_001179 419 Hs.24976 NM_001179 HPRD:04363 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 561_WT_peak_4693 chr20 52367932 52368221 + 63 NA Intergenic Intergenic 124172 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 561_WT_peak_4435 chr2 201980816 201981018 + 63 NA promoter-TSS (NM_001202516) promoter-TSS (NM_001202516) 40 NM_001127184 8837 Hs.390736 NM_003879 HPRD:04671 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD-like apoptosis regulator protein-coding 561_WT_peak_3534 chr18 74779390 74779670 + 63 NA intron (NM_001025101, intron 2 of 8) intron (NM_001025101, intron 2 of 8) -50475 NM_001025092 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 561_WT_peak_667 chr1 198583464 198583671 + 63 NA Intergenic MER39|LTR|ERV1 -24531 NM_001267798 5788 Hs.654514 NM_002838 HPRD:01050 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase, receptor type, C protein-coding 561_WT_peak_2059 chr13 52026930 52027128 + 63 NA promoter-TSS (NR_103812) promoter-TSS (NR_103812) 246 NM_012141 26512 Hs.439440 NM_012141 HPRD:05063 INTS6 DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2 integrator complex subunit 6 protein-coding 561_WT_peak_2170 chr14 35099063 35099288 + 63 NA 5' UTR (NM_021249, exon 1 of 13) 5' UTR (NM_021249, exon 1 of 13) 140 NM_021249 58533 Hs.356647 NM_021249 HPRD:12086 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 561_WT_peak_703 chr1 206763568 206763831 + 63 NA Intergenic MIRb|SINE|MIR 22205 NM_006893 1939 Hs.497581 NM_006893 HPRD:01057 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 561_WT_peak_50 chr1 9747675 9747923 + 63 NA intron (NM_005026, intron 1 of 23) (TG)n|Simple_repeat|Simple_repeat -33155 NR_027045 644997 Hs.568595 NM_001045478 ENSG00000179840 C1orf200 - chromosome 1 open reading frame 200 ncRNA 561_WT_peak_3875 chr19 51228439 51228644 + 63 NA exon (NM_002975, exon 4 of 4) exon (NM_002975, exon 4 of 4) 1936 NM_002975 6320 Hs.512680 NM_002975 HPRD:05277 CLEC11A CLECSF3|LSLCL|P47|SCGF C-type lectin domain family 11, member A protein-coding 561_WT_peak_6309 chr6 37016779 37016961 + 63 NA Intergenic Intergenic 43447 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 561_WT_peak_1461 chr11 95976565 95976805 + 63 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -97917 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 561_WT_peak_5499 chr4 73935086 73935266 + 63 NA exon (NM_173827, exon 1 of 6) exon (NM_173827, exon 1 of 6) 300 NM_173827 285521 Hs.356697 NM_173827 HPRD:08249 COX18 COX18HS COX18 cytochrome C oxidase assembly factor protein-coding 561_WT_peak_7453 chr9 132222962 132223160 + 63 NA Intergenic Intergenic -27878 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 561_WT_peak_5672 chr5 14664362 14664605 + 63 NA promoter-TSS (NM_138348) promoter-TSS (NM_138348) -300 NM_138348 90268 Hs.406335 NM_138348 HPRD:14266 OTULIN FAM105B|GUM OTU deubiquitinase with linear linkage specificity protein-coding 561_WT_peak_5829 chr5 78810121 78810400 + 63 NA promoter-TSS (NM_004272) promoter-TSS (NM_004272) -601 NM_001277078 9456 Hs.591761 NM_004272 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer homolog 1 (Drosophila) protein-coding 561_WT_peak_7236 chr9 26956186 26956239 + 63 NA promoter-TSS (NM_025103) promoter-TSS (NM_025103) 93 NR_121605 101929602 NR_121605 ENSG00000234676 IFT74-AS1 - IFT74 antisense RNA 1 ncRNA 561_WT_peak_3555 chr19 984236 984544 + 63 NA promoter-TSS (NM_024100) promoter-TSS (NM_024100) 62 NM_024100 57418 Hs.325321 NM_024100 HPRD:18296 WDR18 Ipi3|R32184_1 WD repeat domain 18 protein-coding 561_WT_peak_3388 chr17 79678785 79679136 + 63 NA promoter-TSS (NM_012140) promoter-TSS (NM_012140) -306 NM_012140 1468 Hs.548187 NM_012140 HPRD:08424 SLC25A10 DIC solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 protein-coding 561_WT_peak_5264 chr3 133524639 133525203 + 63 NA intron (NM_021203, intron 2 of 7) CpG 22044 NM_021203 58477 Hs.12152 NM_021203 HPRD:18105 SRPRB APMCF1 signal recognition particle receptor, B subunit protein-coding 561_WT_peak_6318 chr6 41499651 41499855 + 62 NA Intergenic Intergenic -14411 NM_001012426 116113 Hs.131436 NM_138457 HPRD:10600 FOXP4 hFKHLA forkhead box P4 protein-coding 561_WT_peak_5958 chr5 139944185 139944424 + 62 NA promoter-TSS (NM_133172) promoter-TSS (NM_133172) -115 NM_133173 10307 Hs.529449 NM_006051 HPRD:04089 APBB3 FE65L2|SRA amyloid beta (A4) precursor protein-binding, family B, member 3 protein-coding 561_WT_peak_4255 chr2 112196943 112197052 + 62 NA intron (NR_024373, intron 1 of 1) intron (NR_024373, intron 1 of 1) 55695 NR_015395 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-1HG AGD2|LINC00978 MIR4435-1 host gene (non-protein coding) ncRNA 561_WT_peak_6746 chr7 91510017 91510405 + 62 NA promoter-TSS (NM_001301135) promoter-TSS (NM_001301135) -177 NM_006980 7978 Hs.532216 NM_006980 HPRD:08373 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 561_WT_peak_1643 chr12 31477241 31477631 + 62 NA non-coding (NR_026806, exon 1 of 1) non-coding (NR_026806, exon 1 of 1) 186 NR_026806 79857 Hs.534485 NM_024799 ENSG00000177340 FLJ13224 - uncharacterized LOC79857 ncRNA 561_WT_peak_6250 chr6 29617622 29617794 + 62 NA Intergenic Intergenic -7050 NM_001008228 4340 Hs.141308 NM_002433 HPRD:11831 MOG BTN6|BTNL11|MOGIG2|NRCLP7 myelin oligodendrocyte glycoprotein protein-coding 561_WT_peak_5947 chr5 138677673 138677875 + 62 NA promoter-TSS (NM_001033112) promoter-TSS (NM_001033112) 253 NR_109830 51247 Hs.396644 NM_016480 HPRD:05726 PAIP2 PAIP-2|PAIP2A poly(A) binding protein interacting protein 2 protein-coding 561_WT_peak_2456 chr15 44719578 44719865 + 62 NA 5' UTR (NM_016396, exon 1 of 13) 5' UTR (NM_016396, exon 1 of 13) 142 NM_016396 51496 Hs.497967 NM_016396 HPRD:13697 CTDSPL2 HSPC129 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 protein-coding 561_WT_peak_2716 chr16 19126083 19126217 + 62 NA non-coding (NR_028028, exon 2 of 2) non-coding (NR_028028, exon 2 of 2) 896 NR_028028 162073 Hs.530899 NM_001034841 HPRD:18743 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein-like 2 protein-coding 561_WT_peak_3044 chr17 10600865 10601133 + 62 NA promoter-TSS (NM_004589) promoter-TSS (NM_004589) 72 NM_020233 56985 Hs.47668 NM_020233 ADPRM C17orf48|NBLA03831 ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent protein-coding 561_WT_peak_2941 chr16 87902051 87902177 + 62 NA intron (NM_003486, intron 1 of 9) intron (NM_003486, intron 1 of 9) 986 NM_003486 8140 Hs.513797 NM_003486 HPRD:02552 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 protein-coding 561_WT_peak_307 chr1 87170225 87171001 + 62 NA exon (NM_001206652, exon 1 of 11) exon (NM_001206652, exon 1 of 11) 360 NM_001206653 51100 Hs.136309 NM_016009 HPRD:15333 SH3GLB1 Bif-1|PPP1R70|dJ612B15.2 SH3-domain GRB2-like endophilin B1 protein-coding 561_WT_peak_6673 chr7 55433520 55433874 + 62 NA 5' UTR (NM_018697, exon 1 of 9) 5' UTR (NM_018697, exon 1 of 9) 556 NM_018697 55915 Hs.595384 NM_018697 HPRD:13956 LANCL2 GPR69B|TASP LanC lantibiotic synthetase component C-like 2 (bacterial) protein-coding 561_WT_peak_1054 chr10 75544998 75545246 + 62 NA promoter-TSS (NM_001242488) promoter-TSS (NM_001242488) -260 NM_001242487 23053 Hs.65135 NM_015037 HPRD:17199 ZSWIM8 KIAA0913 zinc finger, SWIM-type containing 8 protein-coding 561_WT_peak_2373 chr14 102414393 102414563 + 62 NA Intergenic CpG -16387 NM_001376 1778 Hs.614080 NM_001376 HPRD:02524 DYNC1H1 DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein, cytoplasmic 1, heavy chain 1 protein-coding 561_WT_peak_5257 chr3 130745319 130745591 + 62 NA promoter-TSS (NM_024800) promoter-TSS (NM_024800) -239 NM_024800 79858 Hs.657336 NM_024800 HPRD:14821 NEK11 - NIMA-related kinase 11 protein-coding 561_WT_peak_2584 chr15 85201669 85201839 + 62 NA promoter-TSS (NM_021077) promoter-TSS (NM_021077) 48 NM_205858 4828 Hs.386470 NM_021077 HPRD:01210 NMB - neuromedin B protein-coding 561_WT_peak_6526 chr6 155635305 155635575 + 62 NA exon (NM_016020, exon 1 of 7) exon (NM_016020, exon 1 of 7) 177 NM_016020 51106 Hs.279908 NM_016020 TFB1M CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 561_WT_peak_7466 chr9 134273775 134273962 + 62 NA Intergenic Intergenic -31609 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline-rich coiled-coil 2B protein-coding 561_WT_peak_5734 chr5 49736486 49736921 + 62 NA intron (NM_198449, intron 1 of 8) CpG 531 NM_198449 133418 Hs.561411 NM_198449 HPRD:13271 EMB GP70 embigin protein-coding 561_WT_peak_3425 chr18 9090983 9091329 + 62 NA Intergenic Intergenic -11472 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 561_WT_peak_6032 chr5 176560171 176560517 + 62 NA promoter-TSS (NM_022455) promoter-TSS (NM_022455) 264 NM_172349 64324 Hs.106861 NM_022455 HPRD:09455 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 561_WT_peak_2477 chr15 50647400 50647629 + 62 NA promoter-TSS (NM_181427) promoter-TSS (NM_181427) 91 NM_181427 2553 Hs.654350 NM_002041 HPRD:15975 GABPB1 BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4TF1B|GABPB|GABPB2|NRF2B1|NRF2B2 GA binding protein transcription factor, beta subunit 1 protein-coding 561_WT_peak_3075 chr17 20937652 20937887 + 62 NA intron (NM_015276, intron 1 of 12) Tigger7|DNA|TcMar-Tigger 8583 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding 561_WT_peak_1361 chr11 65269626 65270169 + 62 NA non-coding (NR_002819, exon 1 of 1) non-coding (NR_002819, exon 1 of 1) 4664 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 561_WT_peak_5883 chr5 118323980 118324197 + 62 NA exon (NM_173666, exon 1 of 6) exon (NM_173666, exon 1 of 6) 152 NM_173666 285605 Hs.655891 NM_173666 DTWD2 - DTW domain containing 2 protein-coding 561_WT_peak_3178 chr17 40086433 40086619 + 62 NA promoter-TSS (NR_110662) promoter-TSS (NR_110662) -350 NR_110662 83538 Hs.201134 NM_031421 TTC25 - tetratricopeptide repeat domain 25 protein-coding 561_WT_peak_4333 chr2 157189370 157189643 + 62 NA promoter-TSS (NM_006186) promoter-TSS (NM_006186) -219 NM_006186 4929 Hs.563344 NM_006186 HPRD:03493 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4, group A, member 2 protein-coding 561_WT_peak_6482 chr6 135449777 135450052 + 62 NA Intergenic Intergenic -52539 NM_001161660 4602 Hs.606320 NM_005375 HPRD:01810 MYB Cmyb|c-myb|c-myb_CDS|efg v-myb avian myeloblastosis viral oncogene homolog protein-coding 561_WT_peak_4609 chr20 33460555 33460729 + 62 NA promoter-TSS (NM_178026) promoter-TSS (NM_178026) 19 NM_178026 2686 Hs.433738 NM_178026 HPRD:07488 GGT7 D20S101|GGT4|GGTL3|GGTL5|dJ18C9.2 gamma-glutamyltransferase 7 protein-coding 561_WT_peak_3108 chr17 29058320 29058497 + 62 NA intron (NR_024187, intron 1 of 7) CpG 21782 NR_024187 440423 Hs.628886 NR_024187 SUZ12P1 SUZ12P suppressor of zeste 12 homolog pseudogene 1 pseudo 561_WT_peak_1809 chr12 95467344 95467543 + 62 NA promoter-TSS (NM_001127362) promoter-TSS (NM_001127362) -39 NM_001032287 7181 Hs.108301 NM_003297 HPRD:03318 NR2C1 TR2 nuclear receptor subfamily 2, group C, member 1 protein-coding 561_WT_peak_2254 chr14 64337361 64337557 + 62 NA intron (NM_182914, intron 1 of 115) MIR|SINE|MIR 17776 NM_182914 23224 Hs.745014 NM_015180 HPRD:09763 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing, nuclear envelope 2 protein-coding 561_WT_peak_4847 chr22 21356494 21356671 + 62 NA promoter-TSS (NM_001008695) promoter-TSS (NM_001008695) -178 NM_030573 80764 Hs.512756 NM_030573 HPRD:15500 THAP7 - THAP domain containing 7 protein-coding 561_WT_peak_4758 chr21 30257506 30257849 + 62 NA promoter-TSS (NR_047510) promoter-TSS (NR_047510) 18 NR_047510 29104 Hs.163846 NM_013240 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 (putative) protein-coding 561_WT_peak_5089 chr3 46411426 46411587 + 62 NA promoter-TSS (NM_000579) promoter-TSS (NM_000579) -127 NM_000579 1234 Hs.450802 NM_000579 HPRD:03223 CCR5 CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22 chemokine (C-C motif) receptor 5 (gene/pseudogene) protein-coding 561_WT_peak_5404 chr4 6641906 6642126 + 62 NA 5' UTR (NM_033296, exon 1 of 2) 5' UTR (NM_033296, exon 1 of 2) 198 NM_033296 93621 Hs.406590 NM_033296 HPRD:17589 MRFAP1 PAM14|PGR1 Morf4 family associated protein 1 protein-coding 561_WT_peak_2936 chr16 87421646 87421954 + 62 NA intron (NM_001282683, intron 2 of 9) intron (NM_001282683, intron 2 of 9) 3913 NM_001282683 79791 Hs.567582 NM_024735 FBXO31 FBX14|FBXO14|Fbx31|pp2386 F-box protein 31 protein-coding 561_WT_peak_4917 chr22 39486515 39487078 + 62 NA Intergenic Intergenic -6433 NM_001166004 164668 Hs.440515 NM_181773 HPRD:16508 APOBEC3H A3H|ARP-10|ARP10 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H protein-coding 561_WT_peak_3352 chr17 74268116 74268454 + 62 NA TTS (NM_182565) TTS (NM_182565) 6999 NM_182565 283991 Hs.744981 NM_182565 HPRD:14533 UBALD2 FAM100B UBA-like domain containing 2 protein-coding 561_WT_peak_5839 chr5 81267555 81267744 + 62 NA promoter-TSS (NM_001131028) promoter-TSS (NM_001131028) -195 NM_031482 83734 Hs.713698 NM_031482 HPRD:16497 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 561_WT_peak_4559 chr20 5591900 5592082 + 62 NA promoter-TSS (NM_019593) promoter-TSS (NM_019593) -319 NM_019593 56261 Hs.636359 NM_019593 HPRD:10025 GPCPD1 GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) protein-coding 561_WT_peak_7409 chr9 117692684 117692958 + 62 NA promoter-TSS (NM_001244) promoter-TSS (NM_001244) 54 NM_001244 944 Hs.494901 NM_001244 TNFSF8 CD153|CD30L|CD30LG tumor necrosis factor (ligand) superfamily, member 8 protein-coding 561_WT_peak_5199 chr3 110533233 110533614 + 62 NA Intergenic Intergenic 255383 NR_045114 100506555 Hs.535689 NR_045114 PVRL3-AS1 - PVRL3 antisense RNA 1 ncRNA 561_WT_peak_342 chr1 101361778 101362152 + 62 NA intron (NM_133496, intron 1 of 10) intron (NM_133496, intron 1 of 10) 331 NM_133496 148867 Hs.533903 NM_133496 HPRD:15369 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 (zinc transporter), member 7 protein-coding 561_WT_peak_6945 chr8 22875988 22876172 + 62 NA 3' UTR (NM_001160036, exon 12 of 12) 3' UTR (NM_001160036, exon 12 of 12) 18988 NM_015178 23221 Hs.372688 NM_015178 HPRD:06300 RHOBTB2 DBC2 Rho-related BTB domain containing 2 protein-coding 561_WT_peak_4418 chr2 197107036 197107390 + 62 NA intron (NM_020760, intron 19 of 28) intron (NM_020760, intron 19 of 28) -17535 NR_110225 101927482 Hs.191841 NR_110225 ENSG00000229056 LOC101927482 - uncharacterized LOC101927482 ncRNA 561_WT_peak_5516 chr4 82392851 82393032 + 62 NA 5' UTR (NM_001300736, exon 1 of 13) 5' UTR (NM_001300736, exon 1 of 13) 141 NM_001300735 153020 Hs.591696 NM_152545 HPRD:17955 RASGEF1B GPIG4 RasGEF domain family, member 1B protein-coding 561_WT_peak_3893 chr19 54974178 54974494 + 62 NA exon (NM_198988, exon 1 of 1) exon (NM_198988, exon 1 of 1) 558 NM_198988 94059 Hs.590976 NM_198988 HPRD:13986 LENG9 - leukocyte receptor cluster (LRC) member 9 protein-coding 561_WT_peak_990 chr10 51623097 51623308 + 62 NA non-coding (NR_073029, exon 1 of 8) non-coding (NR_073029, exon 1 of 8) 184 NR_073030 100287932 Hs.524308 NM_006327 ENSG00000138297 TIMM23 TIM23 translocase of inner mitochondrial membrane 23 homolog (yeast) protein-coding 561_WT_peak_6568 chr7 1014965 1015141 + 62 NA intron (NM_001031617, intron 1 of 2) CpG 182 NM_001031617 90639 Hs.121593 NM_001031617 COX19 - cytochrome c oxidase assembly homolog 19 (S. cerevisiae) protein-coding 561_WT_peak_5583 chr4 119199967 119200196 + 62 NA promoter-TSS (NR_002963) promoter-TSS (NR_002963) 164 NR_034011 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 (non-protein coding) ncRNA 561_WT_peak_2461 chr15 45004550 45004812 + 62 NA intron (NM_004048, intron 1 of 3) MIR|SINE|MIR 996 NM_004048 567 Hs.534255 NM_004048 B2M - beta-2-microglobulin protein-coding 561_WT_peak_6721 chr7 75056980 75057190 + 62 NA intron (NM_001099415, intron 7 of 14) intron (NM_001099415, intron 7 of 14) 17480 NR_033322 155400 Hs.436034 NM_001039575 NSUN5P1 NSUN5B|WBSCR20B NOP2/Sun domain family, member 5 pseudogene 1 pseudo 561_WT_peak_3239 chr17 47647525 47647696 + 62 NA intron (NR_103773, intron 1 of 2) CpG 3816 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 561_WT_peak_5739 chr5 52096308 52096490 + 62 NA exon (NM_015946, exon 2 of 3) exon (NM_015946, exon 2 of 3) 12263 NM_181501 3672 Hs.644352 NM_181501 ITGA1 CD49a|VLA1 integrin, alpha 1 protein-coding 561_WT_peak_1519 chr11 124823775 124823856 + 62 NA promoter-TSS (NM_025004) promoter-TSS (NM_025004) -202 NM_025004 80071 Hs.287555 NM_025004 HPRD:07820 CCDC15 - coiled-coil domain containing 15 protein-coding 561_WT_peak_7476 chr9 137028918 137029103 + 62 NA TTS (NR_023344) TTS (NR_023344) 676 NR_023344 100151684 Hs.545589 NR_023344 ENSG00000221676 RNU6ATAC RNU6ATAC1|U6ATAC RNA, U6atac small nuclear (U12-dependent splicing) snRNA 561_WT_peak_6967 chr8 29948412 29948667 + 62 NA intron (NR_039605, intron 1 of 1) intron (NR_039605, intron 1 of 1) -4383 NM_001128208 23484 Hs.146585 NM_015344 HPRD:09551 LEPROTL1 HSPC112|Vps55|my047 leptin receptor overlapping transcript-like 1 protein-coding 561_WT_peak_1609 chr12 12849824 12849856 + 62 NA promoter-TSS (NM_006143) promoter-TSS (NM_006143) -719 NM_006143 2842 Hs.657862 NM_006143 HPRD:04236 GPR19 - G protein-coupled receptor 19 protein-coding 561_WT_peak_1696 chr12 51419527 51419968 + 62 NA 5' UTR (NM_001174129, exon 1 of 16) 5' UTR (NM_001174129, exon 1 of 16) 177 NM_001174129 4891 Hs.505545 NM_000617 HPRD:02750 SLC11A2 DCT1|DMT1|NRAMP2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 protein-coding 561_WT_peak_4602 chr20 32319606 32319856 + 62 NA non-coding (NR_104259, exon 1 of 14) non-coding (NR_104259, exon 1 of 14) 165 NM_001282935 84905 Hs.516989 NM_032819 HPRD:15781 ZNF341 - zinc finger protein 341 protein-coding 561_WT_peak_6818 chr7 108166316 108166499 + 62 NA intron (NM_001256011, intron 1 of 10) CpG 355 NM_001256008 50640 Hs.617340 NM_015723 HPRD:13741 PNPLA8 IPLA2(GAMMA)|IPLA2-2|IPLA2G|iPLA2gamma patatin-like phospholipase domain containing 8 protein-coding 561_WT_peak_3966 chr2 11605889 11606152 + 62 NA non-coding (NR_103490, exon 1 of 5) non-coding (NR_103490, exon 1 of 5) 283 NM_001278278 1876 Hs.603093 NM_198256 HPRD:04251 E2F6 E2F-6 E2F transcription factor 6 protein-coding 561_WT_peak_5101 chr3 48956303 48956475 + 62 NA exon (NM_001123040, exon 1 of 1) exon (NM_001123040, exon 1 of 1) 108 NM_006321 10425 Hs.633601 NM_006321 HPRD:09286 ARIH2 ARI2|TRIAD1 ariadne RBR E3 ubiquitin protein ligase 2 protein-coding 561_WT_peak_3380 chr17 78806737 78807066 + 62 NA intron (NM_020761, intron 9 of 33) intron (NM_020761, intron 9 of 33) -27469 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 561_WT_peak_1987 chr13 33160527 33160777 + 62 NA promoter-TSS (NM_015032) promoter-TSS (NM_015032) 88 NM_015032 23047 Hs.744901 NM_015032 HPRD:05624 PDS5B APRIN|AS3|CG008 PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) protein-coding 561_WT_peak_6703 chr7 72350298 72350574 + 62 NA 5' UTR (NM_001257190, exon 1 of 16) 5' UTR (NM_001257190, exon 1 of 16) 530 NM_001257190 9883 Hs.655217 NM_172020 HPRD:11448 POM121 P145|POM121A POM121 transmembrane nucleoporin protein-coding 561_WT_peak_824 chr1 244615459 244615639 + 62 NA promoter-TSS (NM_001126) promoter-TSS (NM_001126) -113 NM_001126 159 Hs.498313 NM_001126 HPRD:00050 ADSS ADEH|ADSS 2 adenylosuccinate synthase protein-coding 561_WT_peak_6790 chr7 102330225 102330415 + 62 NA Intergenic CpG -18144 NM_032959 246721 Hs.610255 NM_032958 HPRD:17878 POLR2J2 HRPB11B|RPB11b1 polymerase (RNA) II (DNA directed) polypeptide J2 protein-coding 561_WT_peak_2626 chr15 95127980 95128226 + 62 NA Intergenic Intergenic 228939 NM_001159644 55784 Hs.33368 NM_018349 HPRD:07738 MCTP2 - multiple C2 domains, transmembrane 2 protein-coding 561_WT_peak_2191 chr14 50234328 50234750 + 62 NA promoter-TSS (NM_014315) promoter-TSS (NM_014315) -248 NM_014315 23588 Hs.509264 NM_014315 HPRD:08824 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 561_WT_peak_2418 chr15 31727599 31728005 + 62 NA Intergenic Intergenic 108719 NM_015995 51621 Hs.525752 NM_015995 HPRD:05620 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 protein-coding 561_WT_peak_5190 chr3 105729764 105729887 + 62 NA Intergenic Intergenic -141938 NM_170662 868 Hs.430589 NM_170662 HPRD:05136 CBLB Cbl-b|RNF56 Cbl proto-oncogene B, E3 ubiquitin protein ligase protein-coding 561_WT_peak_7233 chr9 22079836 22080043 + 62 NA intron (NR_003529, intron 12 of 18) intron (NR_003529, intron 12 of 18) -70627 NM_078487 1030 Hs.72901 NM_004936 HPRD:02696 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) protein-coding 561_WT_peak_2171 chr14 35515055 35515242 + 62 NA promoter-TSS (NM_173607) promoter-TSS (NM_173607) -311 NM_001289022 283635 Hs.446357 NM_173607 HPRD:12644 FAM177A1 C14orf24 family with sequence similarity 177, member A1 protein-coding 561_WT_peak_7483 chr9 139304350 139304679 + 62 NA promoter-TSS (NM_015160) promoter-TSS (NM_015160) -511 NM_001282946 23203 Hs.495471 NM_015160 HPRD:07500 PMPCA Alpha-MPP|INPP5E|P-55 peptidase (mitochondrial processing) alpha protein-coding 561_WT_peak_2181 chr14 39735935 39736527 + 62 NA promoter-TSS (NM_203355) promoter-TSS (NM_203355) 34 NR_038935 100288846 Hs.509200 NR_038935 ENSG00000258940 LOC100288846 - uncharacterized LOC100288846 ncRNA 561_WT_peak_4508 chr2 235334638 235334860 + 62 NA Intergenic Intergenic 70944 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 561_WT_peak_6489 chr6 137476935 137477292 + 61 NA intron (NM_181309, intron 3 of 5) AmnSINE1|SINE|Deu 17672 NM_052962 116379 Hs.126891 NM_052962 HPRD:05973 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor, alpha 2 protein-coding 561_WT_peak_3602 chr19 7694212 7694434 + 61 NA promoter-TSS (NM_001171155) promoter-TSS (NM_001171155) 116 NM_020196 56949 Hs.9822 NM_020196 HPRD:18306 XAB2 HCNP|HCRN|NTC90|SYF1 XPA binding protein 2 protein-coding 561_WT_peak_7469 chr9 135644976 135645146 + 61 NA intron (NM_152572, intron 11 of 12) intron (NM_152572, intron 11 of 12) -99273 NM_022779 64794 Hs.660767 NM_022779 HPRD:10860 DDX31 PPP1R25 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 protein-coding 561_WT_peak_813 chr1 236162744 236162995 + 61 NA intron (NM_002508, intron 12 of 19) intron (NM_002508, intron 12 of 19) 65612 NM_002508 4811 Hs.356624 NM_002508 HPRD:00574 NID1 NID nidogen 1 protein-coding 561_WT_peak_2276 chr14 72906566 72906806 + 61 NA intron (NM_001204420, intron 3 of 15) LTR33|LTR|ERVL -76842 NR_106994 102465832 NR_106994 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 561_WT_peak_5223 chr3 119812740 119812916 + 61 NA 5' UTR (NM_002093, exon 1 of 12) 5' UTR (NM_002093, exon 1 of 12) 436 NM_001146156 2932 Hs.445733 NM_002093 HPRD:05418 GSK3B - glycogen synthase kinase 3 beta protein-coding 561_WT_peak_2755 chr16 28503689 28503812 + 61 NA promoter-TSS (NM_001286105) promoter-TSS (NM_001286105) -127 NM_001042432 1201 Hs.534667 NM_000086 HPRD:08450 CLN3 BTS|JNCL ceroid-lipofuscinosis, neuronal 3 protein-coding 561_WT_peak_6372 chr6 74233100 74233708 + 61 NA Intergenic CpG -2649 NM_001402 1915 Hs.535192 NM_001402 HPRD:00559 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 561_WT_peak_5381 chr3 197900150 197900327 + 61 NA intron (NM_001145248, intron 6 of 6) (TTAGGG)n|Simple_repeat|Simple_repeat 21001 NM_001145248 728262 Hs.744675 NM_001145248 FAM157A - family with sequence similarity 157, member A protein-coding 561_WT_peak_2616 chr15 93374972 93375203 + 61 NA Intergenic Intergenic 36373 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 561_WT_peak_312 chr1 89506934 89507110 + 61 NA Intergenic L1ME3A|LINE|L1 -18473 NM_018284 2635 Hs.720167 NM_018284 HPRD:02683 GBP3 - guanylate binding protein 3 protein-coding 561_WT_peak_4694 chr20 52509934 52510104 + 61 NA Intergenic Intergenic -17771 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 561_WT_peak_5311 chr3 167452510 167452724 + 61 NA promoter-TSS (NM_005025) promoter-TSS (NM_005025) 13 NM_145860 11235 Hs.478150 NM_007217 HPRD:10141 PDCD10 CCM3|TFAR15 programmed cell death 10 protein-coding 561_WT_peak_2035 chr13 47242380 47242492 + 61 NA intron (NM_001164211, intron 2 of 19) intron (NM_001164211, intron 2 of 19) 115140 NM_015116 23143 Hs.507971 NM_015116 HPRD:14307 LRCH1 CHDC1|NP81 leucine-rich repeats and calponin homology (CH) domain containing 1 protein-coding 561_WT_peak_5345 chr3 184429451 184429869 + 61 NA 5' UTR (NM_022149, exon 1 of 1) 5' UTR (NM_022149, exon 1 of 1) 176 NM_022149 64110 Hs.306123 NM_022149 HPRD:14348 MAGEF1 - melanoma antigen family F, 1 protein-coding 561_WT_peak_848-2 chr10 3826767 3827380 + 61 NA intron (NM_001300, intron 1 of 3) CpG 400 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 561_WT_peak_5251 chr3 129033969 129034214 + 61 NA 3' UTR (NM_006026, exon 1 of 1) 3' UTR (NM_006026, exon 1 of 1) -1023 NR_026991 339942 Hs.450096 NM_001025468 H1FX-AS1 C3orf47 H1FX antisense RNA 1 ncRNA 561_WT_peak_1667 chr12 46662638 46662831 + 61 NA promoter-TSS (NM_001278390) promoter-TSS (NM_001278390) 474 NM_001278387 81539 Hs.533770 NM_030674 HPRD:12245 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38, member 1 protein-coding 561_WT_peak_4904 chr22 37518533 37518702 + 61 NA Intergenic MIRc|SINE|MIR -13014 NM_001289000 164656 Hs.370885 NM_153609 HPRD:10270 TMPRSS6 IRIDA transmembrane protease, serine 6 protein-coding 561_WT_peak_5945 chr5 137911463 137911680 + 61 NA promoter-TSS (NM_004134) promoter-TSS (NM_004134) -253 NM_004134 3313 Hs.184233 NM_004134 HPRD:02770 HSPA9 CSA|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74 heat shock 70kDa protein 9 (mortalin) protein-coding 561_WT_peak_1000 chr10 60144965 60145364 + 61 NA non-coding (NR_073073, exon 1 of 8) non-coding (NR_073073, exon 1 of 8) 261 NM_001270782 7019 Hs.594250 NM_003201 HPRD:02702 TFAM MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 561_WT_peak_3228 chr17 46588550 46588728 + 61 NA Intergenic Intergenic 19633 NM_002144 3211 Hs.99992 NM_002144 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 561_WT_peak_5 chr1 948736 949108 + 61 NA promoter-TSS (NM_005101) promoter-TSS (NM_005101) 75 NM_005101 9636 Hs.458485 NM_005101 HPRD:00958 ISG15 G1P2|IFI15|IP17|UCRP|hUCRP ISG15 ubiquitin-like modifier protein-coding 561_WT_peak_1988 chr13 33479220 33479495 + 61 NA intron (NR_047020, intron 3 of 4) MLT1L|LTR|ERVL-MaLR 6433 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 561_WT_peak_5508 chr4 77997371 77997569 + 61 NA promoter-TSS (NM_006835) promoter-TSS (NM_006835) -345 NM_006835 10983 Hs.518827 NM_006835 HPRD:16690 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 561_WT_peak_2773 chr16 30064330 30064500 + 61 NA promoter-TSS (NM_000034) promoter-TSS (NM_000034) 4 NM_000034 226 Hs.513490 NM_000034 HPRD:00070 ALDOA ALDA|GSD12|HEL-S-87p aldolase A, fructose-bisphosphate protein-coding 561_WT_peak_1291 chr11 57479460 57479654 + 61 NA promoter-TSS (NR_026593) promoter-TSS (NR_026593) 116 NM_153450 219541 Hs.43619 NM_153450 HPRD:17477 MED19 DT2P1G7|LCMR1 mediator complex subunit 19 protein-coding 561_WT_peak_997 chr10 52432009 52432172 + 61 NA Intergenic MER101|LTR|ERV1 -48353 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 561_WT_peak_3914 chr19 57874570 57874869 + 61 NA promoter-TSS (NR_002166) promoter-TSS (NR_002166) -160 NR_002166 10597 Hs.446620 NR_002166 ENSG00000256060 TRAPPC2P1 MIP-2A|SEDLP|SEDLP1 trafficking protein particle complex 2 pseudogene 1 pseudo 561_WT_peak_4012 chr2 29237702 29238028 + 61 NA intron (NM_199280, intron 8 of 19) intron (NM_199280, intron 8 of 19) 33701 NM_199280 165186 Hs.525977 NM_199280 HPRD:14110 FAM179A - family with sequence similarity 179, member A protein-coding 561_WT_peak_1332 chr11 64071898 64072105 + 61 NA promoter-TSS (NM_001282451) promoter-TSS (NM_001282451) -999 NM_001282451 2101 Hs.110849 NM_004451 HPRD:07210 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen-related receptor alpha protein-coding 561_WT_peak_206 chr1 43397826 43398121 + 61 NA intron (NM_006516, intron 2 of 9) intron (NM_006516, intron 2 of 9) -26747 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 561_WT_peak_1508 chr11 120119457 120119627 + 61 NA TTS (NR_038829) TTS (NR_038829) 8639 NM_014352 25833 Hs.227115 NM_014352 HPRD:09582 POU2F3 Epoc-1|OCT-11|OCT11|OTF-11|PLA-1|PLA1|Skn-1a POU class 2 homeobox 3 protein-coding 561_WT_peak_3575 chr19 3155119 3155398 + 61 NA promoter-TSS (NR_110670) promoter-TSS (NR_110670) -85 NR_110670 100996351 NR_110670 ENSG00000267551 LOC100996351 - uncharacterized LOC100996351 ncRNA 561_WT_peak_848 chr10 3826320 3826456 + 61 NA intron (NM_001300, intron 1 of 3) intron (NM_001300, intron 1 of 3) 1085 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 561_WT_peak_1560 chr12 6579459 6579611 + 61 NA intron (NM_001297438, intron 1 of 4) intron (NM_001297438, intron 1 of 4) 530 NM_014231 6843 Hs.20021 NM_014231 HPRD:01716 VAMP1 SPAX1|SYB1|VAMP-1 vesicle-associated membrane protein 1 (synaptobrevin 1) protein-coding 561_WT_peak_1993 chr13 37573644 37573806 + 61 NA promoter-TSS (NM_013338) promoter-TSS (NM_013338) -221 NM_013338 29880 Hs.507769 NM_013338 HPRD:05193 ALG5 bA421P11.2 ALG5, dolichyl-phosphate beta-glucosyltransferase protein-coding 561_WT_peak_2328 chr14 90864939 90865082 + 61 NA intron (NM_006888, intron 1 of 5) intron (NM_006888, intron 1 of 5) 1683 NM_006888 801 Hs.282410 NM_006888 HPRD:00241 CALM1 CALML2|CAMI|CPVT4|DD132|PHKD|caM calmodulin 1 (phosphorylase kinase, delta) protein-coding 561_WT_peak_1143 chr10 112155625 112155795 + 61 NA Intergenic Intergenic -91003 NM_005871 10285 Hs.632093 NM_005871 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 561_WT_peak_3159 chr17 37910360 37910545 + 61 NA Intergenic CpG 14232 NM_001242443 2886 Hs.86859 NM_005310 HPRD:03311 GRB7 - growth factor receptor-bound protein 7 protein-coding 561_WT_peak_5694 chr5 38453750 38453938 + 61 NA intron (NM_182798, intron 14 of 16) intron (NM_182798, intron 14 of 16) 8266 NM_182801 133584 Hs.20103 NM_152403 HPRD:13433 EGFLAM AGRINL|AGRNL|PIKA EGF-like, fibronectin type III and laminin G domains protein-coding 561_WT_peak_3393 chr17 80023714 80023922 + 61 NA promoter-TSS (NM_022156) promoter-TSS (NM_022156) -121 NM_022156 64118 Hs.514599 NM_022156 DUS1L DUS1|PP3111 dihydrouridine synthase 1-like (S. cerevisiae) protein-coding 561_WT_peak_2343 chr14 93650898 93651129 + 61 NA promoter-TSS (NM_001098621) promoter-TSS (NM_001098621) 236 NM_022151 64112 Hs.24719 NM_022151 HPRD:17580 MOAP1 MAP-1|PNMA4 modulator of apoptosis 1 protein-coding 561_WT_peak_6146-2 chr6 26125775 26125847 + 61 NA TTS (NM_003512) TTS (NM_003512) 1438 NM_003512 8334 Hs.484950 NM_003512 HPRD:09104 HIST1H2AC H2A/l|H2AFL|dJ221C16.4 histone cluster 1, H2ac protein-coding 561_WT_peak_4558 chr20 5591476 5591782 + 61 NA promoter-TSS (NM_019593) promoter-TSS (NM_019593) 43 NM_019593 56261 Hs.636359 NM_019593 HPRD:10025 GPCPD1 GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) protein-coding 561_WT_peak_4645 chr20 43594785 43595008 + 61 NA promoter-TSS (NM_006282) promoter-TSS (NM_006282) 203 NR_038341 100505826 Hs.196065 NR_038341 ENSG00000227477 STK4-AS1 - STK4 antisense RNA 1 (head to head) ncRNA 561_WT_peak_3433 chr18 10787518 10787717 + 61 NA intron (NM_022068, intron 15 of 51) intron (NM_022068, intron 15 of 51) 125687 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 561_WT_peak_2339 chr14 92588269 92588498 + 61 NA promoter-TSS (NM_004545) promoter-TSS (NM_004545) 85 NM_017437 53981 Hs.657632 NM_017437 HPRD:05824 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2, 100kDa protein-coding 561_WT_peak_2012 chr13 42032474 42032669 + 61 NA exon (NM_014059, exon 2 of 5) exon (NM_014059, exon 2 of 5) 1029 NM_014059 28984 Hs.507866 NM_014059 HPRD:17970 RGCC C13orf15|RGC-32|RGC32|bA157L14.2 regulator of cell cycle protein-coding 561_WT_peak_5155 chr3 71632435 71632643 + 61 NA intron (NM_001012505, intron 1 of 6) CpG-18683 365 NM_001244808 27086 Hs.59368 NM_032682 HPRD:18518 FOXP1 12CC4|QRF1|hFKH1B forkhead box P1 protein-coding 561_WT_peak_1481 chr11 110166447 110166698 + 61 NA intron (NM_001260492, intron 1 of 15) CpG 865 NM_001260495 5962 Hs.263671 NM_002906 HPRD:01534 RDX DFNB24 radixin protein-coding 561_WT_peak_4896 chr22 36558339 36558461 + 61 NA intron (NM_145641, intron 1 of 4) LTR43B|LTR|ERV1 -1423 NR_027834 80833 Hs.474737 NM_014349 HPRD:06264 APOL3 APOLIII|CG121 apolipoprotein L, 3 protein-coding 561_WT_peak_6773 chr7 99815550 99815780 + 61 NA intron (NR_028038, intron 5 of 6) LTR13|LTR|ERVK -1206 NM_024070 79037 Hs.729356 NM_024070 ENSG00000213413 PVRIG C7orf15 poliovirus receptor related immunoglobulin domain containing protein-coding 561_WT_peak_2657 chr16 2317898 2318104 + 61 NA promoter-TSS (NM_006711) promoter-TSS (NM_006711) -114 NM_006711 10921 Hs.355643 NM_006711 HPRD:07341 RNPS1 E5.1 RNA binding protein S1, serine-rich domain protein-coding 561_WT_peak_6402 chr6 91296961 91297145 + 61 NA promoter-TSS (NM_003188) promoter-TSS (NM_003188) -33 NM_003188 6885 Hs.594838 NM_003188 HPRD:04011 MAP3K7 MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 561_WT_peak_3328 chr17 66509171 66509325 + 61 NA intron (NM_212472, intron 1 of 10) intron (NM_212472, intron 1 of 10) 728 NM_212472 5573 Hs.280342 NM_002734 HPRD:01786 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase, cAMP-dependent, regulatory, type I, alpha protein-coding 561_WT_peak_3369 chr17 76813145 76813526 + 61 NA intron (NM_025090, intron 10 of 19) Tigger3a|DNA|TcMar-Tigger 23634 NM_025090 57602 Hs.464243 NM_025090 HPRD:07164 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 561_WT_peak_4706 chr20 57225979 57226351 + 61 NA promoter-TSS (NM_001204868) promoter-TSS (NM_001204868) -144 NR_037943 8675 Hs.307913 NM_003763 HPRD:04718 STX16 SYN16 syntaxin 16 protein-coding 561_WT_peak_2360 chr14 100532640 100532821 + 61 NA intron (NM_016337, intron 1 of 13) MIRc|SINE|MIR 979 NM_016337 51466 Hs.125867 NM_016337 HPRD:10942 EVL RNB6 Enah/Vasp-like protein-coding 561_WT_peak_6767 chr7 99516736 99517161 + 61 NA exon (NM_033017, exon 1 of 7) exon (NM_033017, exon 1 of 7) 275 NM_033017 89122 Hs.50749 NM_033017 HPRD:15556 TRIM4 RNF87 tripartite motif containing 4 protein-coding 561_WT_peak_1820 chr12 98909036 98909224 + 61 NA promoter-TSS (NM_003276) promoter-TSS (NM_003276) -221 NM_001032284 7112 Hs.11355 NM_003276 HPRD:01777 TMPO CMD1T|LAP2|LEMD4|PRO0868|TP thymopoietin protein-coding 561_WT_peak_7458 chr9 132648491 132648765 + 61 NA TTS (NM_015033) TTS (NM_015033) 16744 NR_106914 102466750 NR_106914 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 561_WT_peak_4214 chr2 96971092 96971299 + 61 NA 5' UTR (NM_014014, exon 1 of 45) 5' UTR (NM_014014, exon 1 of 45) 112 NM_014014 23020 Hs.246112 NM_014014 HPRD:03391 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein 200kDa (U5) protein-coding 561_WT_peak_2472 chr15 48623689 48623931 + 61 NA promoter-TSS (NM_001948) promoter-TSS (NM_001948) 189 NM_001025248 1854 Hs.527980 NM_001948 HPRD:03165 DUT dUTPase deoxyuridine triphosphatase protein-coding 561_WT_peak_6083 chr6 3259128 3259420 + 61 NA exon (NM_001135750, exon 1 of 2) exon (NM_001135750, exon 1 of 2) 112 NM_001128592 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome (prosome, macropain) assembly chaperone 4 protein-coding 561_WT_peak_2405 chr15 22509153 22509385 + 61 NA Intergenic Intergenic -37296 NR_033735 646396 Hs.451294 NR_033735 REREP3 - arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 pseudo 561_WT_peak_4436 chr2 201981196 201981573 + 61 NA intron (NM_001202517, intron 1 of 8) CpG 507 NM_001127184 8837 Hs.390736 NM_003879 HPRD:04671 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD-like apoptosis regulator protein-coding 561_WT_peak_6146 chr6 26125569 26125655 + 61 NA TTS (NM_003512) TTS (NM_003512) 1239 NM_003512 8334 Hs.484950 NM_003512 HPRD:09104 HIST1H2AC H2A/l|H2AFL|dJ221C16.4 histone cluster 1, H2ac protein-coding 561_WT_peak_2886 chr16 70148189 70148496 + 60 NA 5' UTR (NM_017990, exon 1 of 19) 5' UTR (NM_017990, exon 1 of 19) 813 NM_017990 55066 Hs.744043 NM_017990 HPRD:17832 PDPR PDP3 pyruvate dehydrogenase phosphatase regulatory subunit protein-coding 561_WT_peak_5012 chr3 14166226 14166464 + 60 NA promoter-TSS (NM_024334) promoter-TSS (NM_024334) 26 NM_001098502 131474 Hs.517815 NM_144636 HPRD:13045 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 561_WT_peak_6505 chr6 144904468 144904853 + 60 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 291787 NM_007124 7402 Hs.133135 NM_007124 HPRD:00547 UTRN DMDL|DRP|DRP1 utrophin protein-coding 561_WT_peak_1337 chr11 64781184 64781357 + 60 NA promoter-TSS (NM_001199745) promoter-TSS (NM_001199745) -315 NM_001667 402 Hs.502836 NM_001667 HPRD:11869 ARL2 ARFL2 ADP-ribosylation factor-like 2 protein-coding 561_WT_peak_3637 chr19 12902281 12902551 + 60 NA 5' UTR (NM_002229, exon 1 of 1) 5' UTR (NM_002229, exon 1 of 1) 106 NM_002229 3726 Hs.25292 NM_002229 HPRD:01303 JUNB AP-1 jun B proto-oncogene protein-coding 561_WT_peak_6389 chr6 88451868 88452251 + 60 NA Intergenic MLT1F1|LTR|ERVL-MaLR -40074 NM_018064 55122 Hs.485915 NM_018064 HPRD:12864 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 561_WT_peak_4998 chr3 9438512 9439026 + 60 NA promoter-TSS (NM_001080517) promoter-TSS (NM_001080517) 405 NR_027007 440944 Hs.598958 NM_001013713 ENSG00000206573 THUMPD3-AS1 SETD5-AS1 THUMPD3 antisense RNA 1 ncRNA 561_WT_peak_2033 chr13 46756094 46756389 + 60 NA intron (NM_002298, intron 1 of 15) intron (NM_002298, intron 1 of 15) 218 NM_002298 3936 Hs.381099 NM_002298 HPRD:01082 LCP1 CP64|HEL-S-37|L-PLASTIN|LC64P|LPL|PLS2 lymphocyte cytosolic protein 1 (L-plastin) protein-coding 561_WT_peak_6350 chr6 52930246 52930588 + 60 NA 5' UTR (NM_033480, exon 1 of 13) 5' UTR (NM_033480, exon 1 of 13) 160 NM_033480 26268 Hs.216653 NM_012347 HPRD:16434 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 561_WT_peak_4174 chr2 86114840 86115024 + 60 NA intron (NM_003896, intron 1 of 6) intron (NM_003896, intron 1 of 6) 1225 NM_003896 8869 Hs.415117 NM_003896 HPRD:05098 ST3GAL5 SATI|SIAT9|SIATGM3S|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 561_WT_peak_6842 chr7 130598296 130598567 + 60 NA promoter-TSS (NR_034120) promoter-TSS (NR_034120) 208 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 561_WT_peak_7023 chr8 54934982 54935195 + 60 NA promoter-TSS (NM_201437) promoter-TSS (NM_201437) -72 NR_109901 6917 Hs.491745 NM_006756 HPRD:03252 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A (SII), 1 protein-coding 561_WT_peak_5902 chr5 131746807 131746997 + 60 NA intron (NR_045116, intron 1 of 3) intron (NR_045116, intron 1 of 3) 437 NR_045116 441108 Hs.658288 NM_001013717 HPRD:18460 C5orf56 - chromosome 5 open reading frame 56 ncRNA 561_WT_peak_1955 chr13 24825705 24825968 + 60 NA intron (NM_001286792, intron 5 of 14) intron (NM_001286792, intron 5 of 14) 2741 NR_046531 100874231 Hs.577998 NR_046531 ENSG00000227213 SPATA13-AS1 - SPATA13 antisense RNA 1 ncRNA 561_WT_peak_6370 chr6 74171615 74171888 + 60 NA exon (NM_012123, exon 1 of 12) exon (NM_012123, exon 1 of 12) 297 NM_133645 25821 Hs.347614 NM_012123 HPRD:17611 MTO1 COXPD10 mitochondrial tRNA translation optimization 1 protein-coding 561_WT_peak_1329 chr11 63753338 63753509 + 60 NA promoter-TSS (NM_017670) promoter-TSS (NM_017670) 98 NM_017670 55611 Hs.473788 NM_017670 OTUB1 OTB1|OTU1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding 561_WT_peak_1689 chr12 49659284 49659469 + 60 NA intron (NM_032704, intron 1 of 3) intron (NM_032704, intron 1 of 3) 511 NM_032704 84790 Hs.652390 NM_032704 HPRD:06747 TUBA1C TUBA6|bcm948 tubulin, alpha 1c protein-coding 561_WT_peak_4254 chr2 111878673 111879094 + 60 NA intron (NM_207002, intron 1 of 3) CpG-15379 392 NM_001204111 10018 Hs.469658 NM_006538 HPRD:04828 BCL2L11 BAM|BIM|BOD BCL2-like 11 (apoptosis facilitator) protein-coding 561_WT_peak_5236 chr3 124860584 124860902 + 60 NA intron (NM_024628, intron 5 of 13) CpG 9653 NR_049815 100847039 NR_049815 MIR5092 - microRNA 5092 ncRNA 561_WT_peak_118 chr1 26438391 26438572 + 60 NA intron (NM_152835, intron 1 of 2) CpG 213 NM_152835 149420 Hs.468801 NM_152835 HPRD:15110 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 561_WT_peak_880 chr10 8446955 8446995 + 60 NA Intergenic Intergenic -136707 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 561_WT_peak_7232 chr9 21995086 21995397 + 60 NA promoter-TSS (NM_058195) promoter-TSS (NM_058195) 451 NR_047536 100048912 Hs.493614 NR_003529 ENSG00000240498 CDKN2B-AS1 ANRIL|CDKN2B-AS|CDKN2BAS|NCRNA00089|PCAT12|p15AS CDKN2B antisense RNA 1 ncRNA 561_WT_peak_5164 chr3 93781486 93781692 + 60 NA promoter-TSS (NM_022072) promoter-TSS (NM_022072) 242 NM_176815 200895 Hs.718516 NM_176815 HPRD:11246 DHFRL1 DHFRP4 dihydrofolate reductase-like 1 protein-coding 561_WT_peak_530 chr1 152007486 152007717 + 60 NA intron (NM_005620, intron 1 of 2) intron (NM_005620, intron 1 of 2) 1910 NM_005620 6282 Hs.417004 NM_005620 HPRD:04385 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 561_WT_peak_1429 chr11 82611960 82612049 + 60 NA promoter-TSS (NM_145018) promoter-TSS (NM_145018) -447 NM_005040 5547 Hs.523936 NM_005040 HPRD:08352 PRCP HUMPCP|PCP prolylcarboxypeptidase (angiotensinase C) protein-coding 561_WT_peak_5820 chr5 75843332 75843533 + 60 NA intron (NM_001285460, intron 1 of 34) intron (NM_001285460, intron 1 of 34) 198 NM_001285460 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 561_WT_peak_645 chr1 182585172 182585468 + 60 NA non-coding (NR_036490, exon 1 of 1) non-coding (NR_036490, exon 1 of 1) 1045 NR_036490 284648 Hs.253475 NR_036490 ENSG00000261504 LOC284648 - uncharacterized LOC284648 ncRNA 561_WT_peak_7155 chr8 131080670 131080945 + 60 NA intron (NM_018482, intron 27 of 29) MER21-int|LTR|ERVL 16207 NR_045385 100507117 Hs.106015 NR_045385 ASAP1-IT2 - ASAP1 intronic transcript 2 (non-protein coding) ncRNA 561_WT_peak_1272 chr11 47236641 47236970 + 60 NA exon (NM_000107, exon 1 of 10) exon (NM_000107, exon 1 of 10) 312 NM_001300734 1643 Hs.700338 NM_000107 HPRD:02886 DDB2 DDBB|UV-DDB2 damage-specific DNA binding protein 2, 48kDa protein-coding 561_WT_peak_3101 chr17 27944897 27945223 + 60 NA intron (NM_032854, intron 4 of 9) CpG-10388 3381 NM_032854 84940 Hs.143046 NM_032854 HPRD:08607 CORO6 - coronin 6 protein-coding 561_WT_peak_5639 chr4 170581491 170581568 + 60 NA exon (NM_001243374, exon 1 of 12) exon (NM_001243374, exon 1 of 12) 316 NM_001243374 1182 Hs.481186 NM_001829 HPRD:02785 CLCN3 CLC3|ClC-3 chloride channel, voltage-sensitive 3 protein-coding 561_WT_peak_4578 chr20 21284043 21284332 + 60 NA intron (NM_012255, intron 1 of 29) CpG 245 NM_012255 22803 Hs.255932 NM_012255 HPRD:10309 XRN2 - 5'-3' exoribonuclease 2 protein-coding 561_WT_peak_6707 chr7 72649134 72649377 + 60 NA non-coding (NR_003186, exon 7 of 8) non-coding (NR_003186, exon 7 of 8) 14581 NR_003186 654816 Hs.655201 NR_003186 ENSG00000182487 NCF1B NCF-1B|SH3PXD1B neutrophil cytosolic factor 1B pseudogene pseudo 561_WT_peak_2374 chr14 102430954 102431244 + 60 NA exon (NM_001376, exon 1 of 78) exon (NM_001376, exon 1 of 78) 234 NM_001376 1778 Hs.614080 NM_001376 HPRD:02524 DYNC1H1 DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein, cytoplasmic 1, heavy chain 1 protein-coding 561_WT_peak_7039 chr8 66868035 66868308 + 60 NA Intergenic Intergenic -65620 NM_033105 85479 Hs.491885 NM_033105 HPRD:07474 DNAJC5B CSP-beta DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding 561_WT_peak_3978 chr2 20550781 20551106 + 60 NA promoter-TSS (NM_001282752) promoter-TSS (NM_001282752) -332 NM_015317 23369 Hs.467824 NM_015317 HPRD:09527 PUM2 PUMH2|PUML2 pumilio RNA-binding family member 2 protein-coding 561_WT_peak_899 chr10 17270263 17270573 + 60 NA 5' UTR (NM_003380, exon 1 of 10) 5' UTR (NM_003380, exon 1 of 10) 160 NM_003380 7431 Hs.455493 NM_003380 HPRD:01899 VIM CTRCT30|HEL113 vimentin protein-coding 561_WT_peak_1868 chr12 113417054 113417218 + 60 NA intron (NM_001032731, intron 1 of 1) intron (NM_001032731, intron 1 of 1) 862 NM_016817 4939 Hs.414332 NM_002535 HPRD:04518 OAS2 - 2'-5'-oligoadenylate synthetase 2, 69/71kDa protein-coding 561_WT_peak_3171 chr17 38478734 38479051 + 60 NA intron (NM_001145301, intron 1 of 8) intron (NM_001145301, intron 1 of 8) 4419 NM_001145301 5914 Hs.654583 NM_000964 RARA NR1B1|RAR retinoic acid receptor, alpha protein-coding 561_WT_peak_6901 chr7 150777692 150777869 + 60 NA TTS (NM_031434) TTS (NM_031434) 190 NM_001258461 10922 Hs.647094 NM_006712 HPRD:07368 FASTK FAST Fas-activated serine/threonine kinase protein-coding 561_WT_peak_1850 chr12 110888134 110888475 + 60 NA promoter-TSS (NM_001287222) promoter-TSS (NM_001287222) -88 NM_001287222 10094 Hs.524741 NM_001278556 HPRD:09175 ARPC3 ARC21|p21-Arc actin related protein 2/3 complex, subunit 3, 21kDa protein-coding 561_WT_peak_995 chr10 52384714 52384979 + 60 NA Intergenic CpG-2841 -1109 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 561_WT_peak_6103 chr6 12119428 12119613 + 60 NA intron (NM_002114, intron 3 of 8) LTR45C|LTR|ERV1 106796 NM_002114 3096 Hs.567284 NM_002114 HPRD:01925 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 561_WT_peak_5818 chr5 75700220 75700450 + 60 NA intron (NM_006633, intron 1 of 35) intron (NM_006633, intron 1 of 35) 1255 NM_006633 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 561_WT_peak_5543 chr4 89204895 89205068 + 60 NA intron (NM_152542, intron 1 of 6) CpG 1002 NM_152542 152926 Hs.43744 NM_152542 HPRD:15167 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent, 1K protein-coding 561_WT_peak_6909 chr7 154720269 154720408 + 60 NA non-coding (NR_024477, exon 1 of 5) non-coding (NR_024477, exon 1 of 5) 111 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1OS PAXIP1-AS2 PAXIP1 opposite strand ncRNA 561_WT_peak_6697 chr7 66767769 66767943 + 60 NA promoter-TSS (NR_022007) promoter-TSS (NR_022007) 231 NR_040586 64940 Hs.632013 NM_022906 HPRD:07817 STAG3L4 STAG3L4P stromal antigen 3-like 4 (pseudogene) pseudo 561_WT_peak_2409 chr15 23207003 23207259 + 60 NA intron (NR_003521, intron 1 of 10) intron (NR_003521, intron 1 of 10) 1226 NR_003521 339005 Hs.212670 NR_003521 ENSG00000187667 WHAMMP3 WHAMML1|WHDC1L1 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3 pseudo 561_WT_peak_7385 chr9 111696146 111696500 + 60 NA promoter-TSS (NM_017832) promoter-TSS (NM_017832) 285 NM_003640 8518 Hs.494738 NM_003640 HPRD:04763 IKBKAP DYS|ELP1|FD|IKAP|IKI3|TOT1 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein protein-coding 561_WT_peak_4792 chr21 38444874 38445361 + 60 NA promoter-TSS (NM_153681) promoter-TSS (NM_153681) -14 NM_153681 51227 Hs.656565 NM_153681 HPRD:05806 PIGP DCRC|DCRC-S|DSCR5|DSRC phosphatidylinositol glycan anchor biosynthesis, class P protein-coding 561_WT_peak_4029 chr2 38830056 38830226 + 60 NA promoter-TSS (NM_001142650) promoter-TSS (NM_001142650) 37 NM_138394 92906 Hs.445497 NM_138394 HPRD:13667 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L-like protein-coding 561_WT_peak_6248 chr6 28949430 28949639 + 60 NA Intergenic Intergenic 23503 NM_001010877 282890 Hs.148218 NM_001010877 HPRD:18325 ZNF311 zf31 zinc finger protein 311 protein-coding 561_WT_peak_2994 chr17 4851270 4851785 + 60 NA intron (NM_005022, intron 1 of 2) CpG 854 NM_005022 5216 Hs.494691 NM_005022 HPRD:01452 PFN1 ALS18 profilin 1 protein-coding 561_WT_peak_1561 chr12 6644331 6644525 + 60 NA promoter-TSS (NM_001256799) promoter-TSS (NM_001256799) 43 NM_001256799 2597 Hs.544577 NM_002046 HPRD:00713 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 561_WT_peak_4886 chr22 31555936 31556118 + 60 NA promoter-TSS (NR_024210) promoter-TSS (NR_024210) 78 NR_037496 100500901 NR_037496 miRBase:MI0016438 MIR3928 - microRNA 3928 ncRNA 561_WT_peak_984 chr10 46168399 46168590 + 60 NA promoter-TSS (NM_001128324) promoter-TSS (NM_001128324) -233 NM_001282906 93550 Hs.89029 NM_174890 HPRD:16494 ZFAND4 ANUBL1 zinc finger, AN1-type domain 4 protein-coding 561_WT_peak_2540 chr15 70784748 70785061 + 60 NA Intergenic MIRc|SINE|MIR 209716 NM_001008224 55075 Hs.108049 NM_018003 HPRD:11657 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 561_WT_peak_6521 chr6 152630855 152631165 + 60 NA exon (NM_033071, exon 89 of 146) exon (NM_033071, exon 89 of 146) -70655 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 561_WT_peak_2263 chr14 66313908 66314093 + 60 NA Intergenic Intergenic 434552 NR_038170 2530 Hs.597649 NM_004480 HPRD:03994 FUT8 - fucosyltransferase 8 (alpha (1,6) fucosyltransferase) protein-coding 561_WT_peak_4509 chr2 235355169 235355348 + 60 NA Intergenic Intergenic 50435 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 561_WT_peak_6845 chr7 130792598 130792800 + 60 NA promoter-TSS (NR_024153) promoter-TSS (NR_024153) -910 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000226380 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 561_WT_peak_802 chr1 235062393 235062575 + 60 NA Intergenic Intergenic 202695 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 561_WT_peak_6868 chr7 139044858 139045113 + 60 NA 5' UTR (NM_001270643, exon 1 of 11) 5' UTR (NM_001270643, exon 1 of 11) 393 NM_001270643 51631 Hs.731488 NM_016019 HPRD:17456 LUC7L2 CGI-74|LUC7B2 LUC7-like 2 (S. cerevisiae) protein-coding 561_WT_peak_3315 chr17 65417883 65418104 + 60 NA intron (NM_181671, intron 1 of 9) L2c|LINE|L2 44596 NM_012417 26207 Hs.591185 NM_012417 HPRD:05504 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding 561_WT_peak_4515 chr2 238609431 238609691 + 60 NA intron (NM_001137552, intron 1 of 10) intron (NM_001137552, intron 1 of 10) 8754 NM_001137553 9208 Hs.471779 NM_004735 HPRD:04460 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP leucine rich repeat (in FLII) interacting protein 1 protein-coding 561_WT_peak_1969 chr13 28000064 28000234 + 60 NA intron (NM_002097, intron 1 of 8) intron (NM_002097, intron 1 of 8) 1468 NM_002097 2971 Hs.445977 NM_002097 HPRD:02916 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 561_WT_peak_6522 chr6 153323744 153324079 + 60 NA promoter-TSS (NM_019041) promoter-TSS (NM_019041) 14 NM_019041 54516 Hs.225836 NM_019041 HPRD:17613 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1-like protein-coding 561_WT_peak_4479 chr2 220144161 220144516 + 60 NA intron (NM_006736, intron 1 of 8) CpG 298 NM_006736 3300 Hs.77768 NM_006736 HPRD:07249 DNAJB2 DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ (Hsp40) homolog, subfamily B, member 2 protein-coding 561_WT_peak_559 chr1 156187821 156188051 + 60 NA intron (NM_001199664, intron 1 of 4) L1ME5|LINE|L1 5157 NM_001199663 100527963 Hs.530479 NM_001199661 ENSG00000260238 PMF1-BGLAP PMF1 PMF1-BGLAP readthrough protein-coding 561_WT_peak_6396 chr6 90943822 90944012 + 60 NA intron (NM_001170794, intron 1 of 6) intron (NM_001170794, intron 1 of 6) 62710 NM_021813 60468 Hs.269764 NM_021813 HPRD:12012 BACH2 BTBD25 BTB and CNC homology 1, basic leucine zipper transcription factor 2 protein-coding 561_WT_peak_157 chr1 32757783 32757960 + 60 NA intron (NM_004964, intron 1 of 13) CpG 163 NM_004964 3065 Hs.88556 NM_004964 HPRD:03143 HDAC1 GON-10|HD1|RPD3|RPD3L1 histone deacetylase 1 protein-coding 561_WT_peak_303 chr1 85741950 85742213 + 60 NA promoter-TSS (NR_045484) promoter-TSS (NR_045484) 40 NR_045484 646626 Hs.193516 NR_045484 LOC646626 - uncharacterized LOC646626 ncRNA 561_WT_peak_1790 chr12 90103569 90103886 + 60 NA non-coding (NR_028138, exon 1 of 1) non-coding (NR_028138, exon 1 of 1) 995 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 - long intergenic non-protein coding RNA 936 ncRNA 561_WT_peak_936 chr10 30984786 30985038 + 60 NA non-coding (NR_036438, exon 2 of 10) non-coding (NR_036438, exon 2 of 10) 3709 NR_036438 645954 Hs.408581 NR_036438 ENSG00000234814 SVILP1 - supervillin pseudogene 1 pseudo 561_WT_peak_233 chr1 52344235 52344417 + 60 NA promoter-TSS (NM_001242361) promoter-TSS (NM_001242361) 283 NM_002525 4898 Hs.584782 NM_002525 HPRD:04036 NRD1 hNRD1|hNRD2 nardilysin (N-arginine dibasic convertase) protein-coding 561_WT_peak_6006 chr5 159545780 159545968 + 60 NA exon (NM_001267035, exon 1 of 3) exon (NM_001267035, exon 1 of 3) 578 NM_001130864 114825 Hs.744960 NM_052927 ENSG00000170234 PWWP2A MST101 PWWP domain containing 2A protein-coding 561_WT_peak_4538 chr20 1098990 1099238 + 60 NA promoter-TSS (NM_006814) promoter-TSS (NM_006814) -126 NM_006814 9491 Hs.471917 NM_006814 HPRD:17919 PSMF1 PI31 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) protein-coding 561_WT_peak_4339 chr2 158260972 158261202 + 60 NA Intergenic Intergenic 39517 NM_004288 9595 Hs.270 NM_004288 HPRD:09192 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 561_WT_peak_3423 chr18 9082850 9083102 + 60 NA Intergenic Intergenic -19652 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 561_WT_peak_1078 chr10 88281293 88281463 + 60 NA 5' UTR (NM_015045, exon 1 of 19) 5' UTR (NM_015045, exon 1 of 19) 163 NM_015045 23063 Hs.203099 NM_015045 HPRD:11072 WAPAL FOE|KIAA0261|WAPL wings apart-like homolog (Drosophila) protein-coding 561_WT_peak_7213 chr9 15299677 15299848 + 60 NA intron (NM_001168339, intron 1 of 19) intron (NM_001168339, intron 1 of 19) 7596 NM_001168341 158219 Hs.563630 NM_152574 HPRD:10801 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 561_WT_peak_85 chr1 19278325 19278865 + 60 NA intron (NM_001136265, intron 1 of 8) intron (NM_001136265, intron 1 of 8) 4231 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 561_WT_peak_3737 chr19 36618816 36618997 + 60 NA Intergenic CpG -12012 NM_001003962 826 Hs.515371 NM_001749 HPRD:00240 CAPNS1 30K|CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain, small subunit 1 protein-coding 561_WT_peak_632 chr1 174992332 174992524 + 60 NA non-coding (NR_037606, exon 1 of 3) non-coding (NR_037606, exon 1 of 3) 163 NM_022100 63931 Hs.654858 NM_022100 HPRD:14777 MRPS14 DJ262D12.2|HSMRPS14|MRP-S14|S14mt mitochondrial ribosomal protein S14 protein-coding 561_WT_peak_4925 chr22 40296873 40297135 + 60 NA promoter-TSS (NM_004810) promoter-TSS (NM_004810) -82 NM_004810 9402 Hs.517499 NM_004810 HPRD:05156 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2-related adaptor protein 2 protein-coding 561_WT_peak_3614 chr19 9946028 9946202 + 60 NA intron (NM_006221, intron 1 of 3) CpG 232 NR_038422 5300 Hs.465849 NM_006221 HPRD:03031 PIN1 DOD|UBL5 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 protein-coding 561_WT_peak_1887 chr12 121124598 121124794 + 60 NA promoter-TSS (NM_014730) promoter-TSS (NM_014730) -253 NM_014730 9761 Hs.744910 NM_014730 HPRD:13781 MLEC KIAA0152 malectin protein-coding 561_WT_peak_3805 chr19 46001954 46002480 + 60 NA exon (NM_001080401, exon 1 of 5) exon (NM_001080401, exon 1 of 5) 486 NM_001080401 147699 Hs.532872 NM_178494 PPM1N - protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative) protein-coding 561_WT_peak_1011 chr10 64564804 64564974 + 60 NA exon (NM_032804, exon 1 of 1) exon (NM_032804, exon 1 of 1) 373 NM_032804 84890 Hs.99821 NM_032804 HPRD:12566 ADO C10orf22 2-aminoethanethiol (cysteamine) dioxygenase protein-coding 561_WT_peak_2212 chr14 53173882 53174216 + 60 NA intron (NM_002806, intron 1 of 13) CpG 153 NM_002806 5706 Hs.156171 NM_002806 HPRD:04086 PSMC6 CADP44|HEL-S-73|P44|SUG2|p42 proteasome (prosome, macropain) 26S subunit, ATPase, 6 protein-coding 561_WT_peak_4556 chr20 5093659 5094047 + 60 NA promoter-TSS (NM_014145) promoter-TSS (NM_014145) -120 NM_001009924 29058 Hs.472024 NM_014145 HPRD:12762 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 561_WT_peak_300 chr1 85039736 85040043 + 60 NA intron (NM_004388, intron 1 of 6) CpG 274 NM_004388 1486 Hs.513557 NM_004388 CTBS CTB chitobiase, di-N-acetyl- protein-coding 561_WT_peak_2259 chr14 65381176 65381378 + 60 NA intron (NM_001204064, intron 1 of 2) CpG 198 NM_001202558 100529261 Hs.325531 NM_001202558 CHURC1-FNTB - CHURC1-FNTB readthrough protein-coding 561_WT_peak_2206 chr14 52118168 52118343 + 60 NA promoter-TSS (NM_152330) promoter-TSS (NM_152330) 207 NR_037676 145438 Hs.645410 NR_037676 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 561_WT_peak_301 chr1 85410800 85411005 + 60 NA intron (NM_153259, intron 7 of 13) intron (NM_153259, intron 7 of 13) 51894 NM_153259 255231 Hs.591446 NM_153259 HPRD:09584 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 561_WT_peak_2084 chr13 98085786 98085956 + 59 NA promoter-TSS (NM_021033) promoter-TSS (NM_021033) -604 NM_021033 5911 Hs.508480 NM_021033 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 561_WT_peak_4978 chr22 50969489 50970012 + 59 NA intron (NM_001014440, intron 3 of 6) CpG-18151 -1236 NM_001257989 1890 Hs.180903 NM_001953 HPRD:08833 TYMP ECGF|ECGF1|MEDPS1|MNGIE|MTDPS1|PDECGF|TP|hPD-ECGF thymidine phosphorylase protein-coding 561_WT_peak_1794 chr12 92578974 92579203 + 59 NA Intergenic MLT1F2|LTR|ERVL-MaLR -39415 NM_001731 694 Hs.255935 NM_001731 BTG1 - B-cell translocation gene 1, anti-proliferative protein-coding 561_WT_peak_2889 chr16 70333080 70333271 + 59 NA 5' UTR (NM_001014451, exon 1 of 11) 5' UTR (NM_001014451, exon 1 of 11) 113 NM_007242 11269 Hs.221761 NM_007242 HPRD:05781 DDX19B DBP5|DDX19|RNAh DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B protein-coding 561_WT_peak_3464 chr18 21166520 21166836 + 59 NA promoter-TSS (NM_000271) promoter-TSS (NM_000271) -97 NM_000271 4864 Hs.464779 NM_000271 HPRD:09622 NPC1 NPC Niemann-Pick disease, type C1 protein-coding 561_WT_peak_4110 chr2 65454999 65455176 + 59 NA exon (NM_001005386, exon 1 of 10) exon (NM_001005386, exon 1 of 10) 258 NM_001005386 10097 Hs.643727 NM_005722 HPRD:05023 ACTR2 ARP2 ARP2 actin-related protein 2 homolog (yeast) protein-coding 561_WT_peak_3185 chr17 40950474 40950696 + 59 NA promoter-TSS (NM_173478) promoter-TSS (NM_173478) 158 NM_001040431 28958 Hs.16059 NM_001040431 ENSG00000183978 COA3 CCDC56|MITRAC12 cytochrome c oxidase assembly factor 3 protein-coding 561_WT_peak_5410 chr4 7651472 7651876 + 59 NA intron (NM_020777, intron 4 of 26) intron (NM_020777, intron 4 of 26) -104143 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 561_WT_peak_3504 chr18 47346285 47346577 + 59 NA intron (NR_117096, intron 1 of 3) intron (NR_117096, intron 1 of 3) 6038 NR_117096 103091864 Hs.646459 NR_117096 SNHG22 SCARNA17HG small nucleolar RNA host gene 22 (non-protein coding) ncRNA 561_WT_peak_5683 chr5 32586275 32586406 + 59 NA intron (NM_006713, intron 1 of 4) CpG 735 NM_006713 10923 Hs.229641 NM_006713 HPRD:02737 SUB1 P15|PC4|p14 SUB1 homolog (S. cerevisiae) protein-coding 561_WT_peak_618 chr1 171750339 171750590 + 59 NA promoter-TSS (NM_015935) promoter-TSS (NM_015935) -297 NM_015935 51603 Hs.494705 NM_014955 HPRD:13821 METTL13 5630401D24Rik|KIAA0859|feat methyltransferase like 13 protein-coding 561_WT_peak_3403 chr17 81148272 81148446 + 59 NA Intergenic Intergenic -26307 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 FLJ43681 - ribosomal protein L23a pseudogene pseudo 561_WT_peak_1224 chr11 17297874 17298076 + 59 NA promoter-TSS (NM_005013) promoter-TSS (NM_005013) -311 NM_005013 4925 Hs.654599 NM_005013 HPRD:09726 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 561_WT_peak_627 chr1 173793760 173794284 + 59 NA promoter-TSS (NM_001171182) promoter-TSS (NM_001171182) 225 NM_018122 55157 Hs.647707 NM_018122 HPRD:07677 DARS2 ASPRS|LBSL|MT-ASPRS aspartyl-tRNA synthetase 2, mitochondrial protein-coding 561_WT_peak_1171 chr10 135121472 135121661 + 59 NA promoter-TSS (NM_145806) promoter-TSS (NM_145806) -857 NM_145806 118472 Hs.422113 NM_145806 HPRD:15812 ZNF511 - zinc finger protein 511 protein-coding 561_WT_peak_3754 chr19 38865267 38865786 + 59 NA exon (NM_002812, exon 1 of 7) exon (NM_002812, exon 1 of 7) 336 NM_002812 5714 Hs.78466 NM_002812 HPRD:10171 PSMD8 HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 protein-coding 561_WT_peak_267 chr1 65431582 65431759 + 59 NA intron (NM_002227, intron 1 of 24) CpG 517 NM_002227 3716 Hs.207538 NM_002227 HPRD:00992 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 561_WT_peak_7292 chr9 73026796 73027028 + 59 NA intron (NM_001206, intron 1 of 1) intron (NM_001206, intron 1 of 1) 2661 NM_001206 687 Hs.150557 NM_001206 HPRD:04211 KLF9 BTEB|BTEB1 Kruppel-like factor 9 protein-coding 561_WT_peak_6382 chr6 86303460 86303980 + 59 NA non-coding (NR_123729, exon 1 of 29) non-coding (NR_123729, exon 1 of 29) 130 NM_153816 57231 Hs.485871 NM_020468 HPRD:11590 SNX14 RGS-PX2 sorting nexin 14 protein-coding 561_WT_peak_7290 chr9 72873279 72874024 + 59 NA promoter-TSS (NM_015110) promoter-TSS (NM_015110) 139 NR_039990 100507299 Hs.556816 NR_039990 SMC5-AS1 MAMDC2-AS2 SMC5 antisense RNA 1 (head to head) ncRNA 561_WT_peak_6448 chr6 116782961 116783269 + 59 NA exon (NM_001010919, exon 2 of 3) exon (NM_001010919, exon 2 of 3) 582 NM_001010919 441168 Hs.381220 NM_001010919 HPRD:18644 FAM26F C6orf187|dJ93H18.5 family with sequence similarity 26, member F protein-coding 561_WT_peak_4507 chr2 235331619 235331713 + 59 NA Intergenic Intergenic 74027 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 561_WT_peak_1188 chr11 3400156 3400350 + 59 NA intron (NR_040083, intron 1 of 5) CpG 199 NM_001242842 7748 Hs.386294 NM_007152 HPRD:03718 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 561_WT_peak_697 chr1 205257503 205257698 + 59 NA Intergenic Intergenic 32271 NM_001297613 9911 Hs.6360 NM_014858 HPRD:11040 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 561_WT_peak_7487 chr9 140134874 140135124 + 59 NA promoter-TSS (NM_006088) promoter-TSS (NM_006088) -712 NM_006088 10383 Hs.433615 NM_006088 HPRD:04043 TUBB4B Beta2|TUBB2|TUBB2C tubulin, beta 4B class IVb protein-coding 561_WT_peak_2174 chr14 35872870 35873334 + 59 NA intron (NM_020529, intron 1 of 5) CpG 858 NM_020529 4792 Hs.81328 NM_020529 HPRD:01235 NFKBIA IKBA|MAD-3|NFKBI nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha protein-coding 561_WT_peak_6094 chr6 8102399 8102753 + 59 NA intron (NR_037618, intron 1 of 6) CpG 252 NM_001135650 9521 Hs.602353 NM_004280 HPRD:10931 EEF1E1 AIMP3|P18 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 561_WT_peak_3792 chr19 45458139 45458434 + 59 NA promoter-TSS (NM_001294) promoter-TSS (NM_001294) 36 NM_001282175 1209 Hs.444441 NM_001294 ENSG00000104853 CLPTM1 - cleft lip and palate associated transmembrane protein 1 protein-coding 561_WT_peak_6141 chr6 26044429 26044984 + 59 NA promoter-TSS (NM_003531) promoter-TSS (NM_003531) -821 NM_021062 3018 Hs.553494 NM_021062 HPRD:07536 HIST1H2BB H2B.1|H2B/f|H2BFF histone cluster 1, H2bb protein-coding 561_WT_peak_4687 chr20 50147838 50147929 + 59 NA intron (NM_001258292, intron 1 of 9) intron (NM_001258292, intron 1 of 9) 11375 NM_001258297 4773 Hs.744148 NM_012340 HPRD:02730 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 protein-coding 561_WT_peak_4505 chr2 235200720 235201167 + 59 NA Intergenic Intergenic 204750 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 561_WT_peak_604 chr1 167191350 167191432 + 59 NA intron (NM_001198786, intron 1 of 14) intron (NM_001198786, intron 1 of 14) 1268 NR_037163 5451 Hs.283402 NM_002697 HPRD:01250 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 561_WT_peak_2586 chr15 85291082 85291273 + 59 NA promoter-TSS (NM_014630) promoter-TSS (NM_014630) -641 NM_014630 9640 Hs.79347 NM_014630 HPRD:10339 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 561_WT_peak_1034 chr10 70988729 70988931 + 59 NA intron (NM_025130, intron 2 of 17) intron (NM_025130, intron 2 of 17) 3416 NR_120648 101928994 Hs.562925 NR_120648 ENSG00000229261 LOC101928994 - uncharacterized LOC101928994 ncRNA 561_WT_peak_1099 chr10 94351235 94351541 + 59 NA Intergenic CpG -1437 NM_004523 3832 Hs.8878 NM_004523 HPRD:01023 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 561_WT_peak_684 chr1 203274742 203274965 + 59 NA promoter-TSS (NR_034150) promoter-TSS (NR_034150) 189 NM_006763 7832 Hs.519162 NM_006763 HPRD:03357 BTG2 PC3|TIS21 BTG family, member 2 protein-coding 561_WT_peak_2180 chr14 39644389 39644960 + 59 NA intron (NM_002687, intron 1 of 8) CpG 287 NM_002687 5411 Hs.409965 NM_002687 HPRD:04401 PNN DRS|DRSP|SDK3|memA pinin, desmosome associated protein protein-coding 561_WT_peak_3446 chr18 14178874 14179082 + 59 NA promoter-TSS (NR_040113) promoter-TSS (NR_040113) -118 NR_040113 440482 Hs.632352 NM_001029999 ANKRD20A5P ANKRD20A5 ankyrin repeat domain 20 family, member A5, pseudogene pseudo 561_WT_peak_6792 chr7 102389301 102389522 + 59 NA promoter-TSS (NM_001145268) promoter-TSS (NM_001145268) 12 NM_001145268 222234 Hs.202543 NM_147194 FAM185A - family with sequence similarity 185, member A protein-coding 561_WT_peak_3898 chr19 55816972 55817122 + 59 NA intron (NM_032430, intron 16 of 18) intron (NM_032430, intron 16 of 18) 19661 NM_001085488 284417 Hs.382625 NM_001085488 ENSG00000180061 TMEM150B TMEM224 transmembrane protein 150B protein-coding 561_WT_peak_5328 chr3 172468176 172468299 + 59 NA promoter-TSS (NM_001258316) promoter-TSS (NM_001258316) -238 NM_001258316 1894 Hs.518299 NM_018098 HPRD:11860 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 561_WT_peak_3196 chr17 42143717 42143925 + 59 NA intron (NM_152344, intron 2 of 5) CpG 1166 NM_152344 124801 Hs.355570 NM_152344 HPRD:08701 LSM12 PNAS-135 LSM12 homolog (S. cerevisiae) protein-coding 561_WT_peak_1233 chr11 22647060 22647392 + 59 NA exon (NM_022725, exon 1 of 1) exon (NM_022725, exon 1 of 1) 161 NM_022725 2188 Hs.632151 NM_022725 HPRD:04589 FANCF FAF Fanconi anemia, complementation group F protein-coding 561_WT_peak_7269 chr9 45356837 45357086 + 59 NA Intergenic CpG -351671 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 561_WT_peak_3215 chr17 44488982 44489083 + 59 NA intron (NR_033799, intron 3 of 6) intron (NR_033799, intron 3 of 6) 38853 NR_033799 728806 Hs.735097 NR_033799 NSFP1 NSFP N-ethylmaleimide-sensitive factor pseudogene 1 pseudo 561_WT_peak_5931 chr5 134734959 134735207 + 59 NA promoter-TSS (NM_138610) promoter-TSS (NM_138610) -155 NM_001040158 9555 Hs.420272 NM_004893 HPRD:13624 H2AFY H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family, member Y protein-coding 561_WT_peak_6880 chr7 143598991 143599161 + 59 NA promoter-TSS (NM_014719) promoter-TSS (NM_014719) 96 NM_014719 9747 Hs.735149 NM_014719 HPRD:13813 FAM115A - family with sequence similarity 115, member A protein-coding 561_WT_peak_4712 chr20 60757757 60757927 + 59 NA promoter-TSS (NM_015666) promoter-TSS (NM_015666) -239 NM_015666 26164 Hs.340636 NM_015666 HPRD:13617 MTG2 GTPBP5|ObgH1|dJ1005F21.2 mitochondrial ribosome-associated GTPase 2 protein-coding 561_WT_peak_1500 chr11 118209526 118209737 + 59 NA TTS (NM_000732) TTS (NM_000732) 3828 NM_001040651 915 Hs.504048 NM_000732 HPRD:01730 CD3D CD3-DELTA|IMD19|T3D CD3d molecule, delta (CD3-TCR complex) protein-coding 561_WT_peak_1319 chr11 62420588 62421049 + 59 NA promoter-TSS (NM_030628) promoter-TSS (NM_030628) -44 NM_030628 80789 Hs.458390 NM_030628 HPRD:13883 INTS5 INT5|KIAA1698 integrator complex subunit 5 protein-coding 561_WT_peak_4249 chr2 110551850 110552060 + 59 NA promoter-TSS (NM_005054) promoter-TSS (NM_005054) -11 NM_005054 84220 Hs.469630 NM_005054 HPRD:04128 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2-like and GRIP domain containing 5 protein-coding 561_WT_peak_1304 chr11 60681389 60681583 + 59 NA 5' UTR (NM_024092, exon 1 of 4) 5' UTR (NM_024092, exon 1 of 4) 115 NM_024092 79073 Hs.13662 NM_024092 HPRD:14687 TMEM109 - transmembrane protein 109 protein-coding 561_WT_peak_7307 chr9 77567331 77567512 + 59 NA promoter-TSS (NR_121183) promoter-TSS (NR_121183) 381 NM_017998 55071 Hs.532296 NM_017998 HPRD:12957 C9orf40 - chromosome 9 open reading frame 40 protein-coding 561_WT_peak_3756 chr19 38893272 38893463 + 59 NA promoter-TSS (NM_174905) promoter-TSS (NM_174905) -408 NM_174905 147965 Hs.355162 NM_174905 HPRD:14077 FAM98C - family with sequence similarity 98, member C protein-coding 561_WT_peak_770 chr1 228745913 228746165 + 59 NA Intergenic CpG -34355 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 561_WT_peak_785 chr1 229643829 229644027 + 59 NA promoter-TSS (NR_110630) promoter-TSS (NR_110630) 160 NM_018230 55746 Hs.12457 NM_018230 HPRD:06354 NUP133 hNUP133 nucleoporin 133kDa protein-coding 561_WT_peak_1132 chr10 104154462 104154700 + 59 NA promoter-TSS (NM_001261403) promoter-TSS (NM_001261403) 246 NM_001077494 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 561_WT_peak_7086 chr8 101733066 101733347 + 59 NA intron (NM_002568, intron 1 of 14) intron (NM_002568, intron 1 of 14) 1109 NM_002568 26986 Hs.387804 NM_002568 HPRD:05247 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein, cytoplasmic 1 protein-coding 561_WT_peak_2960 chr16 89939604 89939814 + 59 NA promoter-TSS (NM_014972) promoter-TSS (NM_014972) -285 NM_014972 22980 Hs.415342 NM_014972 HPRD:13830 TCF25 Hulp1|NULP1|PRO2620|hKIAA1049 transcription factor 25 (basic helix-loop-helix) protein-coding 561_WT_peak_6930 chr8 11141871 11142108 + 59 NA promoter-TSS (NM_015458) promoter-TSS (NM_015458) -11 NM_015458 66036 Hs.591395 NM_015458 HPRD:09377 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 561_WT_peak_5847 chr5 89705873 89706094 + 59 NA promoter-TSS (NM_004365) promoter-TSS (NM_004365) 166 NR_105024 731157 Hs.551062 NR_105024 LOC731157 - uncharacterized LOC731157 ncRNA 561_WT_peak_6003 chr5 158767689 158767862 + 59 NA intron (NR_037889, intron 2 of 4) MIRb|SINE|MIR 9249 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 561_WT_peak_3909 chr19 56915631 56915856 + 59 NA promoter-TSS (NM_152478) promoter-TSS (NM_152478) 25 NM_001159861 147949 Hs.146854 NM_152478 HPRD:15860 ZNF583 - zinc finger protein 583 protein-coding 561_WT_peak_4902 chr22 37475600 37475863 + 59 NA intron (NM_001289001, intron 10 of 17) MIRb|SINE|MIR 23962 NM_153609 164656 Hs.370885 NM_153609 HPRD:10270 TMPRSS6 IRIDA transmembrane protease, serine 6 protein-coding 561_WT_peak_4729 chr20 62670129 62670378 + 59 NA non-coding (NR_027687, exon 3 of 3) non-coding (NR_027687, exon 3 of 3) 4556 NR_027687 284739 Hs.97840 NM_207349 HPRD:17341 LINC00176 NCRNA00176|PRR17 long intergenic non-protein coding RNA 176 ncRNA 561_WT_peak_2273 chr14 71787220 71787471 + 59 NA Intergenic CpG -77709 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 561_WT_peak_6601 chr7 17979749 17980065 + 59 NA exon (NM_015132, exon 1 of 26) exon (NM_015132, exon 1 of 26) 224 NM_015132 23161 Hs.487648 NM_015132 HPRD:09418 SNX13 RGS-PX1 sorting nexin 13 protein-coding 561_WT_peak_5065 chr3 40351329 40351499 + 58 NA promoter-TSS (NR_033965) promoter-TSS (NR_033965) -225 NR_033965 440952 Hs.660388 NR_033965 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 561_WT_peak_2248 chr14 62045533 62045761 + 58 NA intron (NR_039985, intron 1 of 2) L1MEg|LINE|L1 -8276 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 561_WT_peak_4135 chr2 70475453 70475706 + 58 NA 5' UTR (NM_022037, exon 1 of 12) 5' UTR (NM_022037, exon 1 of 12) 200 NM_022037 7072 Hs.413123 NM_022037 HPRD:04626 TIA1 TIA-1|WDM TIA1 cytotoxic granule-associated RNA binding protein protein-coding 561_WT_peak_5171 chr3 98282578 98282755 + 58 NA Intergenic Intergenic 29789 NM_000097 1371 Hs.476982 NM_000097 HPRD:00417 CPOX CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 561_WT_peak_7623 chrX 150565236 150565524 + 58 NA promoter-TSS (NM_001017980) promoter-TSS (NM_001017980) -277 NM_001017980 203547 Hs.58633 NM_001017980 HPRD:18578 VMA21 MEAX|XMEA VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) protein-coding 561_WT_peak_2132 chr14 23340589 23340830 + 58 NA promoter-TSS (NM_014045) promoter-TSS (NM_014045) -251 NM_014045 26020 Hs.525232 NM_014045 HPRD:14311 LRP10 LRP9|MST087 low density lipoprotein receptor-related protein 10 protein-coding 561_WT_peak_2411 chr15 25684333 25684767 + 58 NA promoter-TSS (NM_000462) promoter-TSS (NM_000462) -375 NM_130839 7337 Hs.598862 NM_000462 HPRD:03375 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 561_WT_peak_1739 chr12 57998374 57998560 + 58 NA promoter-TSS (NM_178502) promoter-TSS (NM_178502) 62 NM_001286245 196403 Hs.32374 NM_178502 HPRD:16842 DTX3 RNF154|deltex3 deltex 3, E3 ubiquitin ligase protein-coding 561_WT_peak_1469 chr11 107328283 107328534 + 58 NA intron (NM_152434, intron 1 of 17) intron (NM_152434, intron 1 of 17) 164 NM_152434 143884 Hs.212140 NM_152434 HPRD:13102 CWF19L2 - CWF19-like 2, cell cycle control (S. pombe) protein-coding 561_WT_peak_3880 chr19 52511398 52511994 + 58 NA promoter-TSS (NM_198480) promoter-TSS (NM_198480) -213 NM_001199324 284370 Hs.368355 NM_198480 HPRD:15875 ZNF615 - zinc finger protein 615 protein-coding 561_WT_peak_4260 chr2 112812958 112813229 + 58 NA 5' UTR (NM_032824, exon 1 of 19) 5' UTR (NM_032824, exon 1 of 19) 293 NM_032824 84910 Hs.656298 NM_032824 HPRD:07867 TMEM87B - transmembrane protein 87B protein-coding 561_WT_peak_3861 chr19 50180451 50180724 + 58 NA intron (NM_001207042, intron 1 of 7) CpG 178 NM_198318 3276 Hs.20521 NM_001536 HPRD:04257 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 561_WT_peak_4204 chr2 95787363 95787593 + 58 NA intron (NM_031902, intron 1 of 11) CpG 276 NM_031902 64969 Hs.655259 NM_031902 HPRD:10099 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 561_WT_peak_1888 chr12 121471880 121472091 + 58 NA intron (NM_001261825, intron 1 of 3) intron (NM_001261825, intron 1 of 3) 5060 NM_001261825 8638 Hs.118633 NM_003733 HPRD:04473 OASL OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase-like protein-coding 561_WT_peak_1601 chr12 12510095 12510390 + 58 NA promoter-TSS (NR_024061) promoter-TSS (NR_024061) 229 NM_058169 118426 Hs.720779 NM_058169 HPRD:17439 LOH12CR1 LOH1CR12 loss of heterozygosity, 12, chromosomal region 1 protein-coding 561_WT_peak_1490 chr11 116706631 116706835 + 58 NA exon (NM_000039, exon 4 of 4) exon (NM_000039, exon 4 of 4) 1605 NM_000039 335 Hs.93194 NM_000039 HPRD:02517 APOA1 - apolipoprotein A-I protein-coding 561_WT_peak_6420 chr6 106967319 106967811 + 58 NA exon (NM_001624, exon 2 of 20) exon (NM_001624, exon 2 of 20) 7835 NM_001624 202 Hs.724262 NM_001624 HPRD:18576 AIM1 CRYBG1|ST4 absent in melanoma 1 protein-coding 561_WT_peak_5650 chr4 186064017 186064297 + 58 NA promoter-TSS (NM_001151) promoter-TSS (NM_001151) -260 NM_001151 291 Hs.246506 NM_001151 HPRD:00058 SLC25A4 1|AAC1|ANT|ANT 1|ANT1|MTDPS12|PEO2|PEO3|T1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 protein-coding 561_WT_peak_5134 chr3 57583429 57583879 + 58 NA promoter-TSS (NM_001660) promoter-TSS (NM_001660) -439 NM_001660 378 Hs.652183 NM_001660 HPRD:03107 ARF4 ARF2 ADP-ribosylation factor 4 protein-coding 561_WT_peak_6109 chr6 15023741 15023933 + 58 NA Intergenic Intergenic -222369 NM_004973 3720 Hs.269059 NM_004973 HPRD:03355 JARID2 JMJ jumonji, AT rich interactive domain 2 protein-coding 561_WT_peak_7600 chrX 106959886 106960193 + 58 NA promoter-TSS (NM_001015881) promoter-TSS (NM_001015881) 252 NM_004089 1831 Hs.522074 NM_004089 HPRD:04266 TSC22D3 DIP|DSIPI|GILZ|TSC-22R|hDIP TSC22 domain family, member 3 protein-coding 561_WT_peak_7553 chrX 53710559 53710876 + 58 NA intron (NM_031407, intron 2 of 83) CpG 2957 NM_031407 10075 Hs.136905 NM_031407 HPRD:06608 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase protein-coding 561_WT_peak_1468 chr11 105948659 105948844 + 58 NA promoter-TSS (NM_152433) promoter-TSS (NM_152433) -286 NM_198439 143879 Hs.101949 NM_152433 HPRD:10005 KBTBD3 BKLHD3 kelch repeat and BTB (POZ) domain containing 3 protein-coding 561_WT_peak_2787 chr16 30670280 30670582 + 58 NA Intergenic CpG -5347 NM_001105079 64319 Hs.247186 NM_022452 HPRD:16354 FBRS FBS|FBS1 fibrosin protein-coding 561_WT_peak_7565 chrX 64254828 64255008 + 58 NA promoter-TSS (NM_001178032) promoter-TSS (NM_001178032) -294 NM_001243804 55906 Hs.28249 NM_018684 HPRD:06584 ZC4H2 HCA127|KIAA1166|WRWF|WWS zinc finger, C4H2 domain containing protein-coding 561_WT_peak_517 chr1 150551705 150552214 + 58 NA exon (NM_182763, exon 1 of 2) exon (NM_182763, exon 1 of 2) 255 NM_182763 4170 Hs.632486 NM_021960 HPRD:08870 MCL1 BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT myeloid cell leukemia 1 protein-coding 561_WT_peak_6665 chr7 45018579 45019015 + 58 NA promoter-TSS (NM_033054) promoter-TSS (NM_033054) -93 NM_033054 64005 Hs.37617 NM_033054 HPRD:17622 MYO1G HA2|HLA-HA2|MHAG myosin IG protein-coding 561_WT_peak_7633 chrX 154493595 154493889 + 58 NA 5' UTR (NM_171998, exon 1 of 2) 5' UTR (NM_171998, exon 1 of 2) 132 NM_171998 116442 Hs.632832 NM_171998 HPRD:06703 RAB39B MRX72 RAB39B, member RAS oncogene family protein-coding 561_WT_peak_412 chr1 120612054 120612423 + 58 NA promoter-TSS (NM_001200001) promoter-TSS (NM_001200001) 79 NM_001200001 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 561_WT_peak_3789 chr19 45004716 45004956 + 58 NA promoter-TSS (NM_001278508) promoter-TSS (NM_001278508) -261 NM_001278509 7733 Hs.22305 NM_013256 ZNF180 HHZ168 zinc finger protein 180 protein-coding 561_WT_peak_70 chr1 15906029 15906219 + 58 NA intron (NM_024758, intron 3 of 6) intron (NM_024758, intron 3 of 6) 5481 NM_024758 79814 Hs.461532 NM_024758 AGMAT - agmatine ureohydrolase (agmatinase) protein-coding 561_WT_peak_2094 chr13 108870534 108870767 + 58 NA promoter-TSS (NM_032859) promoter-TSS (NM_032859) 66 NM_001098268 3981 Hs.166091 NM_002312 HPRD:03500 LIG4 LIG4S ligase IV, DNA, ATP-dependent protein-coding 561_WT_peak_5486 chr4 52710837 52711123 + 58 NA intron (NM_001287755, intron 1 of 10) CpG 1235 NM_001287755 23142 Hs.605388 NM_015115 HPRD:13791 DCUN1D4 - DCN1, defective in cullin neddylation 1, domain containing 4 protein-coding 561_WT_peak_3495 chr18 44497272 44497452 + 58 NA 5' UTR (NM_004671, exon 1 of 14) 5' UTR (NM_004671, exon 1 of 14) 133 NM_173206 9063 Hs.657844 NM_004671 HPRD:06944 PIAS2 ARIP3|DIP|MIZ|MIZ1|PIASX|PIASX-ALPHA|PIASX-BETA|SIZ2|ZMIZ4 protein inhibitor of activated STAT, 2 protein-coding 561_WT_peak_90 chr1 19923837 19924187 + 58 NA intron (NM_001204089, intron 1 of 3) intron (NM_001204089, intron 1 of 3) 541 NM_001204082 440574 Hs.466662 NM_001032363 ENSG00000173436 MINOS1 C1orf151|MIO10 mitochondrial inner membrane organizing system 1 protein-coding 561_WT_peak_5552 chr4 95128892 95129213 + 58 NA promoter-TSS (NM_001128429) promoter-TSS (NM_001128429) 56 NM_020159 56916 Hs.410406 NM_020159 HPRD:11586 SMARCAD1 ADERM|ETL1|HEL1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 561_WT_peak_6324 chr6 42532076 42532101 + 58 NA exon (NM_015255, exon 1 of 47) exon (NM_015255, exon 1 of 47) 328 NM_001184801 23304 Hs.529925 NM_015255 HPRD:09853 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 561_WT_peak_1067 chr10 76995595 76995882 + 58 NA promoter-TSS (NM_144589) promoter-TSS (NM_144589) 32 NM_144589 118881 Hs.355333 NM_144589 HPRD:08678 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 561_WT_peak_390 chr1 113498453 113498655 + 58 NA promoter-TSS (NR_103744) promoter-TSS (NR_103744) 131 NM_001166496 6566 Hs.75231 NM_003051 HPRD:02816 SLC16A1 HHF7|MCT|MCT1 solute carrier family 16 (monocarboxylate transporter), member 1 protein-coding 561_WT_peak_6336 chr6 43603420 43603617 + 58 NA promoter-TSS (NM_014628) promoter-TSS (NM_014628) -59 NM_014628 9587 Hs.122346 NM_014628 HPRD:10065 MAD2L1BP CMT2 MAD2L1 binding protein protein-coding 561_WT_peak_3933 chr19 58858709 58858888 + 58 NA exon (NM_130786, exon 7 of 8) exon (NM_130786, exon 7 of 8) -4538 NR_015380 503538 Hs.709582 NR_015380 ENSG00000268895 A1BG-AS1 A1BG-AS|A1BGAS|NCRNA00181 A1BG antisense RNA 1 ncRNA 561_WT_peak_6735 chr7 76751628 76751825 + 58 NA promoter-TSS (NM_020879) promoter-TSS (NM_020879) -208 NM_020879 57639 Hs.113940 NM_020879 HPRD:11150 CCDC146 - coiled-coil domain containing 146 protein-coding 561_WT_peak_925 chr10 27530507 27530818 + 58 NA promoter-TSS (NM_145698) promoter-TSS (NM_145698) 406 NR_073195 91452 Hs.530597 NM_145698 HPRD:12415 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 561_WT_peak_3085 chr17 25871690 25871947 + 58 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 72782 NM_014238 8844 Hs.133534 NM_014238 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 561_WT_peak_2266 chr14 69261002 69261638 + 58 NA promoter-TSS (NM_004926) promoter-TSS (NM_004926) -689 NM_001244698 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 561_WT_peak_4770 chr21 34100505 34100701 + 58 NA promoter-TSS (NM_001160302) promoter-TSS (NM_001160302) 178 NR_038879 100506215 Hs.657123 NR_038879 ENSG00000238197 PAXBP1-AS1 GCFC1-AS1 PAXBP1 antisense RNA 1 ncRNA 561_WT_peak_4245 chr2 106363041 106363233 + 58 NA intron (NM_001004722, intron 1 of 3) intron (NM_001004722, intron 1 of 3) 1617 NM_001004722 8440 Hs.529244 NM_003581 HPRD:05378 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 561_WT_peak_105 chr1 24306243 24306876 + 58 NA intron (NM_001300936, intron 1 of 5) CpG 394 NM_001191009 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 561_WT_peak_3949 chr2 3605636 3605947 + 58 NA promoter-TSS (NR_038431) promoter-TSS (NR_038431) 170 NM_001286834 246243 Hs.568006 NM_002936 HPRD:04989 RNASEH1 H1RNA|RNH1 ribonuclease H1 protein-coding 561_WT_peak_5371 chr3 196466638 196467018 + 58 NA promoter-TSS (NM_002577) promoter-TSS (NM_002577) 100 NM_002577 5062 Hs.518530 NM_002577 HPRD:05428 PAK2 PAK65|PAKgamma p21 protein (Cdc42/Rac)-activated kinase 2 protein-coding 561_WT_peak_5747 chr5 53942152 53942339 + 58 NA Intergenic Intergenic 56907 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 561_WT_peak_5691 chr5 36241973 36242162 + 58 NA promoter-TSS (NM_001287340) promoter-TSS (NM_001287340) -167 NM_001085411 133686 Hs.81907 NM_153013 HPRD:08088 NADK2 C5orf33|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 561_WT_peak_3704 chr19 24097798 24097972 + 58 NA intron (NM_001244038, intron 1 of 3) intron (NM_001244038, intron 1 of 3) 201 NM_001244038 730087 Hs.655305 NM_001190829 ZNF726 - zinc finger protein 726 protein-coding 561_WT_peak_3842 chr19 49361960 49362134 + 58 NA intron (NM_020904, intron 8 of 19) intron (NM_020904, intron 8 of 19) 9837 NM_020904 57664 Hs.9469 NM_020904 HPRD:09683 PLEKHA4 PEPP1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 protein-coding 561_WT_peak_6939 chr8 21771117 21771367 + 58 NA promoter-TSS (NM_003974) promoter-TSS (NM_003974) -37 NM_003974 9046 Hs.71215 NM_003974 HPRD:05411 DOK2 p56DOK|p56dok-2 docking protein 2, 56kDa protein-coding 561_WT_peak_1914 chr12 124118267 124118476 + 58 NA promoter-TSS (NM_001516) promoter-TSS (NM_001516) -48 NM_001414 1967 Hs.741273 NM_001414 EIF2B1 EIF2B|EIF2BA eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa protein-coding 561_WT_peak_3712 chr19 29703880 29704094 + 58 NA exon (NM_006003, exon 1 of 2) exon (NM_006003, exon 1 of 2) 149 NM_006003 7386 Hs.743307 NM_006003 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 561_WT_peak_6540 chr6 159271254 159271373 + 58 NA intron (NR_028496, intron 2 of 2) intron (NR_028496, intron 2 of 2) 7351 NR_028496 202459 Hs.487035 NM_145303 HPRD:14130 OSTCP1 DC2L|OSTCL oligosaccharyltransferase complex subunit pseudogene 1 pseudo 561_WT_peak_7441 chr9 131218779 131219103 + 58 NA promoter-TSS (NM_153437) promoter-TSS (NM_153437) -245 NM_153437 4957 Hs.129055 NM_002540 HPRD:03601 ODF2 CT134|ODF2/1|ODF2/2|ODF84 outer dense fiber of sperm tails 2 protein-coding 561_WT_peak_2869 chr16 67063324 67063674 + 58 NA intron (NM_022845, intron 1 of 5) CpG 449 NM_022845 865 Hs.460988 NM_001755 HPRD:00418 CBFB PEBP2B core-binding factor, beta subunit protein-coding 561_WT_peak_6775 chr7 99942259 99942331 + 58 NA intron (NR_036569, intron 3 of 17) intron (NR_036569, intron 3 of 17) -7646 NR_103728 101752334 Hs.521075 NR_103728 PVRIG2P - poliovirus receptor related immunoglobulin domain containing 2, pseudogene pseudo 561_WT_peak_7235 chr9 26947618 26947770 + 58 NA promoter-TSS (NM_001031689) promoter-TSS (NM_001031689) -226 NM_001031689 9373 Hs.27182 NM_004253 HPRD:04850 PLAA DOA1|PLA2P|PLAP phospholipase A2-activating protein protein-coding 561_WT_peak_1627 chr12 24992284 24992540 + 58 NA intron (NM_005504, intron 7 of 10) intron (NM_005504, intron 7 of 10) 62910 NM_001178094 586 Hs.438993 NM_005504 HPRD:00216 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino-acid transaminase 1, cytosolic protein-coding 561_WT_peak_5243 chr3 127872075 127872245 + 58 NA promoter-TSS (NM_021937) promoter-TSS (NM_021937) -153 NM_021937 60678 Hs.477498 NM_021937 HPRD:07409 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA-specific protein-coding 561_WT_peak_7058 chr8 77912431 77912601 + 58 NA promoter-TSS (NM_000318) promoter-TSS (NM_000318) 8 NM_001079867 5828 Hs.437966 NM_000318 HPRD:01367 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 561_WT_peak_6324-2 chr6 42532155 42532246 + 58 NA intron (NM_001184801, intron 1 of 11) CpG 440 NM_001184801 23304 Hs.529925 NM_015255 HPRD:09853 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 561_WT_peak_1791 chr12 90256734 90257000 + 58 NA Intergenic Intergenic 154135 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 - long intergenic non-protein coding RNA 936 ncRNA 561_WT_peak_7133 chr8 124934690 124934891 + 58 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 70563 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1-like family member 6 protein-coding 561_WT_peak_7518 chrX 30731356 30731603 + 58 NA intron (NM_001128127, intron 12 of 19) intron (NM_001128127, intron 12 of 19) 60003 NM_001128127 2710 Hs.1466 NM_000167 HPRD:08363 GK GK1|GKD glycerol kinase protein-coding 561_WT_peak_4656 chr20 46086299 46086576 + 58 NA Intergenic Intergenic -44164 NM_001174087 8202 Hs.592142 NM_006534 HPRD:03570 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 561_WT_peak_7596 chrX 101854479 101854734 + 58 NA 5' UTR (NM_022838, exon 1 of 3) 5' UTR (NM_022838, exon 1 of 3) 180 NM_001168478 64860 Hs.522729 NM_022838 HPRD:06521 ARMCX5 GASP5 armadillo repeat containing, X-linked 5 protein-coding 561_WT_peak_3889 chr19 54605760 54605955 + 58 NA promoter-TSS (NM_004542) promoter-TSS (NM_004542) 137 NM_001282349 126014 Hs.347655 NM_130771 HPRD:06035 OSCAR PIGR3|PIgR-3 osteoclast associated, immunoglobulin-like receptor protein-coding 561_WT_peak_5611 chr4 146402704 146402877 + 58 NA promoter-TSS (NM_005900) promoter-TSS (NM_005900) -161 NM_005900 4086 Hs.604588 NM_005900 HPRD:03356 SMAD1 BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1 SMAD family member 1 protein-coding 561_WT_peak_4046 chr2 43386127 43386511 + 58 NA Intergenic Intergenic 67426 NM_006887 678 Hs.503093 NM_006887 HPRD:18319 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 561_WT_peak_4153 chr2 74710242 74710540 + 58 NA promoter-TSS (NM_032779) promoter-TSS (NM_032779) -34 NM_032779 84865 Hs.430199 NM_032779 CCDC142 - coiled-coil domain containing 142 protein-coding 561_WT_peak_1111 chr10 99094811 99094996 + 58 NA promoter-TSS (NM_012083) promoter-TSS (NM_012083) -445 NM_012083 23401 Hs.140720 NM_012083 HPRD:05419 FRAT2 - frequently rearranged in advanced T-cell lymphomas 2 protein-coding 561_WT_peak_6827 chr7 117928297 117928480 + 58 NA Intergenic L1M3b|LINE|L1 63676 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 561_WT_peak_3631 chr19 12724633 12724825 + 58 NA intron (NM_153358, intron 1 of 3) intron (NM_153358, intron 1 of 3) 2997 NM_153358 163049 Hs.720677 NM_153358 HPRD:08295 ZNF791 - zinc finger protein 791 protein-coding 561_WT_peak_4521 chr2 241075451 241075622 + 58 NA intron (NM_001163424, intron 1 of 2) CpG 211 NM_001163424 150678 Hs.293884 NM_138336 HPRD:17306 MYEOV2 - myeloma overexpressed 2 protein-coding 561_WT_peak_1653 chr12 39836597 39836865 + 58 NA exon (NM_001173465, exon 1 of 34) exon (NM_001173465, exon 1 of 34) 461 NM_001173463 55605 Hs.374201 NM_017641 HPRD:10506 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 561_WT_peak_4420 chr2 198063749 198063961 + 58 NA intron (NM_001195144, intron 1 of 27) intron (NM_001195144, intron 1 of 27) 103388 NR_046837 101927547 Hs.687027 NR_046837 ANKRD44-IT1 - ANKRD44 intronic transcript 1 (non-protein coding) ncRNA 561_WT_peak_5283 chr3 142720366 142720610 + 58 NA promoter-TSS (NR_034032) promoter-TSS (NR_034032) 116 NM_001080415 23350 Hs.596572 NM_001080415 ENSG00000163714 U2SURP SR140|fSAPa U2 snRNP-associated SURP domain containing protein-coding 561_WT_peak_5352 chr3 186759509 186759902 + 58 NA intron (NM_173217, intron 3 of 6) intron (NM_173217, intron 3 of 6) 20040 NM_003032 6480 Hs.207459 NM_003032 HPRD:00184 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding 561_WT_peak_1666 chr12 46660773 46661007 + 58 NA promoter-TSS (NM_001278389) promoter-TSS (NM_001278389) -612 NM_001278389 81539 Hs.533770 NM_030674 HPRD:12245 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38, member 1 protein-coding 561_WT_peak_470 chr1 147995097 147995481 + 58 NA TTS (NR_104086) TTS (NR_104086) 1143 NR_104086 101954277 NR_104086 RNVU1-19 RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19 RNA, variant U1 small nuclear 19 snRNA 561_WT_peak_5867 chr5 107717083 107717416 + 58 NA exon (NM_001163315, exon 1 of 9) exon (NM_001163315, exon 1 of 9) 550 NM_001163315 64839 Hs.657225 NM_022824 HPRD:10950 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine-rich repeat protein 17 protein-coding 561_WT_peak_3653 chr19 14359623 14359861 + 58 NA Intergenic CpG -42745 NM_014921 22859 Hs.94229 NM_014921 LPHN1 CIRL1|CL1|LEC2 latrophilin 1 protein-coding 561_WT_peak_7519 chrX 30907481 30907844 + 58 NA promoter-TSS (NM_152787) promoter-TSS (NM_152787) -151 NM_152787 257397 Hs.188256 NM_152787 HPRD:06738 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 protein-coding 561_WT_peak_5391 chr4 1722137 1722227 + 58 NA intron (NM_138385, intron 1 of 2) CpG 902 NM_001127266 92305 Hs.518562 NM_138385 HPRD:14290 TMEM129 D4S2561E transmembrane protein 129, E3 ubiquitin protein ligase protein-coding 561_WT_peak_4653 chr20 45985319 45985493 + 58 NA exon (NM_001281778, exon 1 of 22) exon (NM_001281778, exon 1 of 22) 227 NM_001281781 23613 Hs.446240 NM_012408 HPRD:10166 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 561_WT_peak_736 chr1 221951160 221951350 + 58 NA Intergenic Intergenic -35737 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 561_WT_peak_3630 chr19 12721756 12721950 + 58 NA promoter-TSS (NM_020714) promoter-TSS (NM_020714) 121 NM_153358 163049 Hs.720677 NM_153358 HPRD:08295 ZNF791 - zinc finger protein 791 protein-coding 561_WT_peak_3676 chr19 17445365 17445800 + 58 NA promoter-TSS (NM_001195422) promoter-TSS (NM_001195422) 56 NM_020959 57719 Hs.590990 NM_020959 HPRD:17223 ANO8 KIAA1623|TMEM16H anoctamin 8 protein-coding 561_WT_peak_981 chr10 44144191 44144418 + 58 NA promoter-TSS (NM_006973) promoter-TSS (NM_006973) 22 NM_006973 7580 Hs.522885 NM_006973 HPRD:01924 ZNF32 KOX30 zinc finger protein 32 protein-coding 561_WT_peak_7074 chr8 96146141 96146324 + 58 NA 5' UTR (NM_024613, exon 1 of 2) 5' UTR (NM_024613, exon 1 of 2) 283 NM_024613 79666 Hs.29724 NM_024613 HPRD:15147 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology domain containing, family F (with FYVE domain) member 2 protein-coding 561_WT_peak_1646 chr12 31899729 31899899 + 58 NA Intergenic Intergenic -17706 NM_001278412 196394 Hs.585084 NM_001113402 HPRD:14115 AMN1 - antagonist of mitotic exit network 1 homolog (S. cerevisiae) protein-coding 561_WT_peak_3685 chr19 18700138 18700509 + 58 NA exon (NM_001100419, exon 3 of 5) exon (NM_001100419, exon 3 of 5) 828 NM_001100418 55049 Hs.655317 NM_017967 HPRD:07948 C19orf60 - chromosome 19 open reading frame 60 protein-coding 561_WT_peak_1342 chr11 64889375 64889573 + 58 NA promoter-TSS (NM_004927) promoter-TSS (NM_004927) -181 NR_037567 740 Hs.744882 NM_004927 HPRD:06037 MRPL49 C11orf4|L49mt|MRP-L49|NOF|NOF1 mitochondrial ribosomal protein L49 protein-coding 561_WT_peak_3533 chr18 74774602 74774772 + 58 NA intron (NM_001025101, intron 3 of 8) intron (NM_001025101, intron 3 of 8) -45632 NM_001025092 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 561_WT_peak_3816 chr19 47249299 47249470 + 58 NA promoter-TSS (NM_001039885) promoter-TSS (NM_001039885) 81 NM_024301 79147 Hs.515493 NM_024301 HPRD:05962 FKRP LGMD2I|MDC1C|MDDGA5|MDDGB5|MDDGC5 fukutin related protein protein-coding 561_WT_peak_2730 chr16 22201397 22201764 + 58 NA Intergenic CpG -16012 NM_013302 29904 Hs.498892 NM_013302 EEF2K HSU93850|eEF-2K eukaryotic elongation factor-2 kinase protein-coding 561_WT_peak_7528 chrX 45711108 45711326 + 58 NA promoter-TSS (NR_125365) promoter-TSS (NR_125365) -297 NR_125365 401585 Hs.633348 NR_125365 LOC401585 - uncharacterized LOC401585 ncRNA 561_WT_peak_4070 chr2 54801644 54801842 + 58 NA intron (NM_178313, intron 1 of 30) intron (NM_178313, intron 1 of 30) 16212 NM_178313 6711 Hs.503178 NM_003128 HPRD:01683 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin, beta, non-erythrocytic 1 protein-coding 561_WT_peak_6080 chr6 2989378 2989585 + 58 NA non-coding (NR_026855, exon 2 of 2) non-coding (NR_026855, exon 2 of 2) 1280 NR_026856 401232 Hs.720158 NM_207495 HPRD:16819 LINC01011 DKFZP686I15217 long intergenic non-protein coding RNA 1011 ncRNA 561_WT_peak_2618 chr15 93425367 93425565 + 58 NA promoter-TSS (NR_037601) promoter-TSS (NR_037601) -607 NR_037600 100507217 Hs.622504 NR_037600 ENSG00000272888 LOC100507217 - uncharacterized LOC100507217 ncRNA 561_WT_peak_6871 chr7 140372981 140373301 + 58 NA exon (NM_052853, exon 1 of 8) exon (NM_052853, exon 1 of 8) 188 NM_052853 90956 Hs.744886 NM_052853 HPRD:10631 ADCK2 AARF aarF domain containing kinase 2 protein-coding 561_WT_peak_4239 chr2 102699736 102699841 + 58 NA intron (NM_001288706, intron 1 of 11) intron (NM_001288706, intron 1 of 11) 12952 NM_001288706 3554 Hs.701982 NM_000877 HPRD:00994 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor, type I protein-coding 561_WT_peak_4814 chr21 44203928 44204325 + 58 NA Intergenic Intergenic 95259 NM_001260477 10785 Hs.248815 NM_018669 HPRD:09330 WDR4 TRM82|TRMT82 WD repeat domain 4 protein-coding 561_WT_peak_980 chr10 43915995 43916254 + 58 NA Intergenic AluSz6|SINE|Alu -11428 NM_001098204 3185 Hs.808 NM_004966 HPRD:03023 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 561_WT_peak_934 chr10 30818679 30818928 + 58 NA Intergenic Intergenic 95853 NM_005204 1326 Hs.432453 NM_005204 HPRD:01863 MAP3K8 COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 561_WT_peak_270 chr1 65886442 65886660 + 57 NA intron (NM_001003680, intron 1 of 19) CpG 152 NM_001198681 54741 Hs.23581 NM_017526 HPRD:13987 LEPROT LEPR|OB-RGRP|OBRGRP|VPS55 leptin receptor overlapping transcript protein-coding 561_WT_peak_6612 chr7 23053949 23054120 + 57 NA promoter-TSS (NM_032581) promoter-TSS (NM_032581) -264 NM_032581 84668 Hs.85603 NM_032581 HPRD:16837 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126, member A protein-coding 561_WT_peak_1170 chr10 134261031 134261499 + 57 NA exon (NM_173541, exon 3 of 3) exon (NM_173541, exon 3 of 3) 2551 NM_173541 170393 Hs.375059 NM_173541 C10orf91 bA432J24.4 chromosome 10 open reading frame 91 protein-coding 561_WT_peak_5645 chr4 185395748 185395949 + 57 NA promoter-TSS (NM_002199) promoter-TSS (NM_002199) -122 NM_002199 3660 Hs.654566 NM_002199 HPRD:00962 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 561_WT_peak_4554 chr20 4794899 4795175 + 57 NA intron (NM_014737, intron 2 of 11) intron (NM_014737, intron 2 of 11) 732 NM_170774 9770 Hs.631504 NM_014737 HPRD:15218 RASSF2 CENP-34|RASFADIN Ras association (RalGDS/AF-6) domain family member 2 protein-coding 561_WT_peak_2146 chr14 24664796 24665253 + 57 NA promoter-TSS (NM_006405) promoter-TSS (NM_006405) -82 NM_001014842 10548 Hs.91586 NM_006405 HPRD:09987 TM9SF1 HMP70|MP70 transmembrane 9 superfamily member 1 protein-coding 561_WT_peak_5083 chr3 44903403 44903594 + 57 NA promoter-TSS (NM_144638) promoter-TSS (NM_144638) 90 NM_144638 131616 Hs.646856 NM_144638 HPRD:15540 TMEM42 - transmembrane protein 42 protein-coding 561_WT_peak_4986 chr3 4847670 4847708 + 57 NA intron (NM_001168272, intron 53 of 60) intron (NM_001168272, intron 53 of 60) -54415 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 561_WT_peak_685 chr1 203296724 203297136 + 57 NA Intergenic Intergenic 22266 NM_006763 7832 Hs.519162 NM_006763 HPRD:03357 BTG2 PC3|TIS21 BTG family, member 2 protein-coding 561_WT_peak_702 chr1 206730381 206730551 + 57 NA promoter-TSS (NM_182665) promoter-TSS (NM_182665) -26 NM_182665 83593 Hs.497579 NM_031437 HPRD:06117 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association (RalGDS/AF-6) domain family member 5 protein-coding 561_WT_peak_5785 chr5 67730077 67730379 + 57 NA Intergenic Intergenic 141832 NM_001242466 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 561_WT_peak_6567 chr7 915681 915974 + 57 NA promoter-TSS (NM_015949) promoter-TSS (NM_015949) -364 NM_015949 51608 Hs.107387 NM_015949 HPRD:12909 GET4 C7orf20|CEE|TRC35 golgi to ER traffic protein 4 homolog (S. cerevisiae) protein-coding 561_WT_peak_715 chr1 208056735 208056869 + 57 NA Intergenic Intergenic 27881 NM_001025109 947 Hs.374990 NM_001773 HPRD:00790 CD34 - CD34 molecule protein-coding 561_WT_peak_3245 chr17 48785231 48785480 + 57 NA promoter-TSS (NM_052855) promoter-TSS (NM_052855) -85 NM_052855 91369 Hs.463426 NM_052855 HPRD:17502 ANKRD40 - ankyrin repeat domain 40 protein-coding 561_WT_peak_5577 chr4 109893988 109894146 + 57 NA intron (NM_001256074, intron 6 of 31) intron (NM_001256074, intron 6 of 31) -209832 NM_001146590 64850 Hs.106576 NM_031279 HPRD:10639 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 561_WT_peak_2342 chr14 93581881 93582051 + 57 NA intron (NM_014216, intron 1 of 10) CpG-7316 297 NM_001142593 3705 Hs.308122 NM_014216 HPRD:03501 ITPK1 ITRPK1 inositol-tetrakisphosphate 1-kinase protein-coding 561_WT_peak_583 chr1 161102313 161102485 + 57 NA promoter-TSS (NM_001039712) promoter-TSS (NM_001039712) 79 NM_032998 9191 Hs.744092 NM_004216 HPRD:06022 DEDD CASP8IP1|DEDD1|DEFT|FLDED1 death effector domain containing protein-coding 561_WT_peak_1128 chr10 103911907 103912118 + 57 NA promoter-TSS (NM_001284389) promoter-TSS (NM_001284389) 79 NM_001284389 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 561_WT_peak_2904 chr16 74472375 74472629 + 57 NA Intergenic Intergenic -17134 NM_001011880 497190 Hs.454670 NM_001011880 HPRD:17419 CLEC18B MRCL2 C-type lectin domain family 18, member B protein-coding 561_WT_peak_4491 chr2 232378781 232378997 + 57 NA non-coding (NR_024079, exon 1 of 3) non-coding (NR_024079, exon 1 of 3) 161 NR_024079 151477 Hs.375211 NM_173513 HPRD:14629 LINC00471 C2orf52 long intergenic non-protein coding RNA 471 ncRNA 561_WT_peak_3240 chr17 47755136 47755306 + 57 NA intron (NM_001007226, intron 1 of 11) CpG 304 NM_001007229 8405 Hs.463382 NM_003563 HPRD:16004 SPOP BTBD32|TEF2 speckle-type POZ protein protein-coding 561_WT_peak_5367 chr3 195906547 195906941 + 57 NA Intergenic Tigger15a|DNA|TcMar-Tigger 31556 NM_001039617 131540 Hs.111591 NM_144637 HPRD:15714 ZDHHC19 DHHC19 zinc finger, DHHC-type containing 19 protein-coding 561_WT_peak_3954 chr2 8748699 8749030 + 57 NA Intergenic MIRb|SINE|MIR -24942 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LOC101929567 - uncharacterized LOC101929567 ncRNA 561_WT_peak_752 chr1 226084912 226085160 + 57 NA Intergenic Intergenic -8190 NM_020997 10637 Hs.656214 NM_020997 HPRD:09116 LEFTY1 LEFTB|LEFTYB left-right determination factor 1 protein-coding 561_WT_peak_3055 chr17 17082679 17082887 + 57 NA intron (NM_015134, intron 21 of 22) AluSg|SINE|Alu 26863 NM_178836 201164 Hs.729079 NM_178836 HPRD:14126 PLD6 ZUC phospholipase D family, member 6 protein-coding 561_WT_peak_5007 chr3 12648837 12648977 + 57 NA intron (NM_002880, intron 5 of 16) AluJb|SINE|Alu 50394 NM_014160 23609 Hs.591666 NM_014160 HPRD:09761 MKRN2 RNF62 makorin ring finger protein 2 protein-coding 561_WT_peak_2125 chr14 21979415 21979878 + 57 NA promoter-TSS (NM_019852) promoter-TSS (NM_019852) -189 NM_019852 56339 Hs.168799 NM_019852 HPRD:14389 METTL3 IME4|M6A|MT-A70|Spo8 methyltransferase like 3 protein-coding 561_WT_peak_3619 chr19 10676521 10676842 + 57 NA promoter-TSS (NM_023008) promoter-TSS (NM_023008) 21 NM_023008 65095 Hs.709967 NM_023008 HPRD:10969 KRI1 - KRI1 homolog (S. cerevisiae) protein-coding 561_WT_peak_1584 chr12 9822437 9822491 + 57 NA intron (NM_001197319, intron 1 of 2) intron (NM_001197319, intron 1 of 2) 160 NR_036693 29121 Hs.268326 NM_013269 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2, member D protein-coding 561_WT_peak_338 chr1 100503416 100503538 + 57 NA promoter-TSS (NM_033055) promoter-TSS (NM_033055) -312 NM_033055 64645 Hs.124156 NM_033055 HPRD:11022 HIAT1 - hippocampus abundant transcript 1 protein-coding 561_WT_peak_2023 chr13 45151064 45151342 + 57 NA promoter-TSS (NM_001243799) promoter-TSS (NM_001243799) -502 NM_183422 8848 Hs.436383 NM_006022 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family, member 1 protein-coding 561_WT_peak_275 chr1 67396058 67396441 + 57 NA intron (NM_001077704, intron 1 of 13) CpG 323 NM_001077704 57708 Hs.605432 NM_020948 HPRD:11362 MIER1 ER1|MI-ER1 mesoderm induction early response 1, transcriptional regulator protein-coding 561_WT_peak_6897 chr7 150253967 150254046 + 57 NA Intergenic LTR49-int|LTR|ERV1 -10452 NM_018326 55303 Hs.647101 NM_018326 HPRD:16281 GIMAP4 IAN-1|IAN1|IMAP4 GTPase, IMAP family member 4 protein-coding 561_WT_peak_2207 chr14 52313351 52313519 + 57 NA Intergenic Intergenic -13587 NM_053064 54331 Hs.187772 NM_053064 HPRD:16234 GNG2 - guanine nucleotide binding protein (G protein), gamma 2 protein-coding 561_WT_peak_1537 chr12 77516 77686 + 57 NA Intergenic Intergenic 9994 NR_026823 677784 Hs.722487 NR_026823 ENSG00000206114 FAM138D F379 family with sequence similarity 138, member D ncRNA 561_WT_peak_1006 chr10 63842461 63842751 + 57 NA intron (NM_001244638, intron 5 of 6) intron (NM_001244638, intron 5 of 6) 33636 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT rich interactive domain 5B (MRF1-like) protein-coding 561_WT_peak_6660 chr7 44678817 44678938 + 57 NA intron (NM_001003941, intron 2 of 8) intron (NM_001003941, intron 2 of 8) 32756 NM_002541 4967 Hs.488181 NM_002541 HPRD:08938 OGDH AKGDH|E1k|OGDC oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) protein-coding 561_WT_peak_2866 chr16 66785274 66785470 + 57 NA intron (NM_001286157, intron 1 of 11) CpG-9372 153 NM_006141 1783 Hs.369068 NM_006141 HPRD:09923 DYNC1LI2 DNCLI2|LIC2 dynein, cytoplasmic 1, light intermediate chain 2 protein-coding 561_WT_peak_6774 chr7 99933181 99933466 + 57 NA promoter-TSS (NR_036570) promoter-TSS (NR_036570) -365 NR_036569 101752399 Hs.521075 NR_036569 STAG3L5P-PVRIG2P-PILRB LOC101735302-LOC101752334-PILRB STAG3L5P-PVRIG2P-PILRB readthrough ncRNA 561_WT_peak_2124 chr14 21979187 21979327 + 57 NA intron (NM_019852, intron 1 of 10) CpG 200 NM_019852 56339 Hs.168799 NM_019852 HPRD:14389 METTL3 IME4|M6A|MT-A70|Spo8 methyltransferase like 3 protein-coding 561_WT_peak_3711 chr19 29703571 29703819 + 57 NA intron (NM_006003, intron 1 of 1) CpG 441 NM_006003 7386 Hs.743307 NM_006003 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 561_WT_peak_3461 chr18 20811270 20811708 + 57 NA intron (NR_023359, intron 4 of 6) intron (NR_023359, intron 4 of 6) 75700 NM_138375 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 561_WT_peak_920 chr10 26986196 26986430 + 57 NA promoter-TSS (NM_014317) promoter-TSS (NM_014317) -282 NM_014317 23590 Hs.558468 NM_014317 HPRD:09591 PDSS1 COQ1|COQ10D2|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 protein-coding 561_WT_peak_3640 chr19 12904058 12904291 + 57 NA TTS (NM_002229) TTS (NM_002229) 1864 NM_002229 3726 Hs.25292 NM_002229 HPRD:01303 JUNB AP-1 jun B proto-oncogene protein-coding 561_WT_peak_2260 chr14 65453523 65453729 + 57 NA 5' UTR (NM_002028, exon 1 of 12) 5' UTR (NM_002028, exon 1 of 12) 119 NM_002028 2342 Hs.325531 NM_002028 HPRD:00608 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 561_WT_peak_4258 chr2 112291051 112291453 + 57 NA Intergenic Intergenic -38560 NR_024373 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-1HG AGD2|LINC00978 MIR4435-1 host gene (non-protein coding) ncRNA 561_WT_peak_598 chr1 162805099 162805331 + 57 NA Intergenic Intergenic 33390 NM_178550 339512 Hs.407631 NM_178550 HPRD:14661 C1orf110 - chromosome 1 open reading frame 110 protein-coding 561_WT_peak_6407 chr6 97731113 97731287 + 57 NA promoter-TSS (NM_198468) promoter-TSS (NM_198468) -148 NM_198468 253714 Hs.444292 NM_198468 HPRD:12865 MMS22L C6orf167|dJ39B17.2 MMS22-like, DNA repair protein protein-coding 561_WT_peak_5801 chr5 70883118 70883429 + 57 NA exon (NM_022132, exon 1 of 17) exon (NM_022132, exon 1 of 17) 158 NM_022132 64087 Hs.604789 NM_022132 HPRD:01952 MCCC2 MCCB methylcrotonoyl-CoA carboxylase 2 (beta) protein-coding 561_WT_peak_2199 chr14 50359561 50360000 + 57 NA promoter-TSS (NM_001663) promoter-TSS (NM_001663) 44 NM_001663 382 Hs.525330 NM_001663 ARF6 - ADP-ribosylation factor 6 protein-coding 561_WT_peak_5040 chr3 27763447 27763850 + 57 NA exon (NM_005442, exon 1 of 6) exon (NM_005442, exon 1 of 6) 558 NM_001278182 8320 Hs.591663 NM_005442 HPRD:07054 EOMES TBR2 eomesodermin protein-coding 561_WT_peak_7345 chr9 94181765 94181799 + 57 NA intron (NM_001290000, intron 1 of 1) intron (NM_001290000, intron 1 of 1) 4362 NM_005384 4783 Hs.79334 NM_005384 HPRD:05619 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 561_WT_peak_3439 chr18 12947379 12947600 + 57 NA promoter-TSS (NM_031216) promoter-TSS (NM_031216) -494 NM_031216 81929 Hs.301048 NM_031216 HPRD:15319 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1-like (S. cerevisiae) protein-coding 561_WT_peak_5212 chr3 113775251 113775538 + 57 NA promoter-TSS (NM_024638) promoter-TSS (NM_024638) 66 NM_020817 57577 Hs.477159 NM_020817 HPRD:13856 KIAA1407 - KIAA1407 protein-coding 561_WT_peak_1220 chr11 14786775 14787027 + 57 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 121632 NM_000922 5140 Hs.445711 NM_000922 HPRD:03626 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B, cGMP-inhibited protein-coding 561_WT_peak_687 chr1 203734108 203734535 + 57 NA promoter-TSS (NM_017773) promoter-TSS (NM_017773) 37 NM_001136190 54900 Hs.272794 NM_017773 HPRD:08312 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 561_WT_peak_3832 chr19 48922633 48922831 + 57 NA intron (NM_000836, intron 8 of 12) intron (NM_000836, intron 8 of 12) 24600 NM_000836 2906 Hs.445015 NM_000836 HPRD:04095 GRIN2D EB11|GluN2D|NMDAR2D|NR2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D protein-coding 561_WT_peak_3205 chr17 43226564 43226734 + 57 NA exon (NM_006460, exon 1 of 1) exon (NM_006460, exon 1 of 1) 1965 NM_006460 10614 Hs.586945 NM_006460 HPRD:09544 HEXIM1 CLP1|EDG1|HIS1|MAQ1 hexamethylene bis-acetamide inducible 1 protein-coding 561_WT_peak_5725 chr5 43065008 43065250 + 57 NA TTS (NR_034127) TTS (NR_034127) 1944 NR_034127 100132356 Hs.726831 NM_175919 LOC100132356 - uncharacterized LOC100132356 ncRNA 561_WT_peak_1903 chr12 122750776 122751082 + 57 NA exon (NM_022916, exon 1 of 13) exon (NM_022916, exon 1 of 13) 139 NM_022916 65082 Hs.592009 NM_022916 HPRD:15651 VPS33A - vacuolar protein sorting 33 homolog A (S. cerevisiae) protein-coding 561_WT_peak_7134 chr8 125208221 125208386 + 57 NA intron (NR_125420, intron 2 of 2) intron (NR_125420, intron 2 of 2) -24540 NR_103547 157376 Hs.662360 NM_182525 HPRD:08138 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 561_WT_peak_4536 chr20 389179 389273 + 57 NA 5' UTR (NM_006462, exon 1 of 11) 5' UTR (NM_006462, exon 1 of 11) 517 NM_031229 10616 Hs.247280 NM_006462 HPRD:16643 RBCK1 C20orf18|HOIL-1|HOIL1|PBMEI|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4 RanBP-type and C3HC4-type zinc finger containing 1 protein-coding 561_WT_peak_901 chr10 17272094 17272338 + 57 NA promoter-TSS (NR_108061) promoter-TSS (NR_108061) -232 NR_108061 100507347 Hs.740502 NR_108060 VIM-AS1 - VIM antisense RNA 1 ncRNA 561_WT_peak_2438 chr15 41047666 41047873 + 57 NA promoter-TSS (NM_018145) promoter-TSS (NM_018145) -311 NM_018145 55177 Hs.511067 NM_018145 HPRD:07687 RMDN3 FAM82A2|FAM82C|RMD-3|RMD3|ptpip51 regulator of microtubule dynamics 3 protein-coding 561_WT_peak_2954 chr16 89574811 89575019 + 56 NA exon (NM_199367, exon 1 of 10) exon (NM_199367, exon 1 of 10) 119 NM_199367 6687 Hs.185597 NM_003119 HPRD:04149 SPG7 CAR|CMAR|PGN|SPG5C spastic paraplegia 7 (pure and complicated autosomal recessive) protein-coding 561_WT_peak_1596 chr12 10826703 10826921 + 56 NA promoter-TSS (NM_018423) promoter-TSS (NM_018423) 79 NM_018423 55359 Hs.24979 NM_018423 HPRD:15447 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 561_WT_peak_7313 chr9 79793099 79793339 + 56 NA promoter-TSS (NR_026668) promoter-TSS (NR_026668) -386 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 561_WT_peak_3382 chr17 79213018 79213280 + 56 NA promoter-TSS (NM_144679) promoter-TSS (NM_144679) 38 NM_001086521 284184 Hs.356545 NM_001086521 ENSG00000224877 C17orf89 - chromosome 17 open reading frame 89 protein-coding 561_WT_peak_2408 chr15 23086703 23086935 + 56 NA promoter-TSS (NM_001142275) promoter-TSS (NM_001142275) 24 NM_001142275 123606 Hs.511797 NM_144599 HPRD:10487 NIPA1 FSP3|SPG6 non imprinted in Prader-Willi/Angelman syndrome 1 protein-coding 561_WT_peak_5579 chr4 111086262 111086516 + 56 NA intron (NM_001130721, intron 2 of 4) intron (NM_001130721, intron 2 of 4) 33382 NM_001130721 79071 Hs.412939 NM_024090 HPRD:13269 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 561_WT_peak_6467 chr6 128841519 128841710 + 56 NA 5' UTR (NM_002844, exon 1 of 30) 5' UTR (NM_002844, exon 1 of 30) 205 NM_001291983 5796 Hs.155919 NM_002844 HPRD:03968 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type, K protein-coding 561_WT_peak_5664 chr5 1633924 1634162 + 56 NA promoter-TSS (NR_003713) promoter-TSS (NR_003713) 77 NR_003713 728613 Hs.720393 NR_003713 LOC728613 - programmed cell death 6 pseudogene pseudo 561_WT_peak_2015 chr13 42928715 42928892 + 56 NA Intergenic Intergenic 82514 NM_016248 11215 Hs.105105 NM_016248 HPRD:05261 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A kinase (PRKA) anchor protein 11 protein-coding 561_WT_peak_4037 chr2 42068045 42068280 + 56 NA Intergenic CpG -36533 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LOC388942 - uncharacterized LOC388942 ncRNA 561_WT_peak_7141 chr8 125577206 125577338 + 56 NA intron (NM_001282974, intron 9 of 13) intron (NM_001282974, intron 9 of 13) 25929 NM_001278645 4715 Hs.15977 NM_005005 HPRD:03264 NDUFB9 B22|CI-B22|LYRM3|UQOR22 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa protein-coding 561_WT_peak_6595 chr7 12250433 12250799 + 56 NA promoter-TSS (NM_001134232) promoter-TSS (NM_001134232) -232 NM_001134232 54664 Hs.396358 NM_018374 TMEM106B - transmembrane protein 106B protein-coding 561_WT_peak_4991 chr3 5019445 5019788 + 56 NA Intergenic Intergenic -1481 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 561_WT_peak_1228 chr11 18415745 18416077 + 56 NA promoter-TSS (NM_001165415) promoter-TSS (NM_001165415) -25 NM_001165416 3939 Hs.2795 NM_005566 HPRD:01025 LDHA GSD11|HEL-S-133P|LDH1|LDHM lactate dehydrogenase A protein-coding 561_WT_peak_4271 chr2 114514269 114514448 + 56 NA promoter-TSS (NR_104470) promoter-TSS (NR_104470) 42 NM_025181 80255 Hs.608286 NM_025181 HPRD:11579 SLC35F5 - solute carrier family 35, member F5 protein-coding 561_WT_peak_4027 chr2 37458424 37458719 + 56 NA promoter-TSS (NM_144736) promoter-TSS (NM_144736) 169 NM_005760 10153 Hs.135406 NM_005760 HPRD:09875 CEBPZ CBF|CBF2|HSP-CBF|NOC1 CCAAT/enhancer binding protein (C/EBP), zeta protein-coding 561_WT_peak_5048 chr3 31574198 31574454 + 56 NA 5' UTR (NM_178862, exon 1 of 16) 5' UTR (NM_178862, exon 1 of 16) 333 NM_178862 201595 Hs.475812 NM_178862 STT3B CDG1X|SIMP|STT3-B STT3B, subunit of the oligosaccharyltransferase complex (catalytic) protein-coding 561_WT_peak_1282 chr11 48030525 48030746 + 56 NA intron (NM_002843, intron 1 of 24) intron (NM_002843, intron 1 of 24) 28525 NM_002843 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 561_WT_peak_1668 chr12 46766381 46766568 + 56 NA 5' UTR (NM_018976, exon 1 of 16) 5' UTR (NM_018976, exon 1 of 16) 171 NM_018976 54407 Hs.221847 NM_018976 HPRD:05535 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38, member 2 protein-coding 561_WT_peak_4783 chr21 35987516 35987951 + 56 NA promoter-TSS (NM_004414) promoter-TSS (NM_004414) -292 NM_004414 1827 Hs.282326 NM_004414 HPRD:04226 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 561_WT_peak_5038 chr3 23987673 23987853 + 56 NA intron (NM_001145425, intron 1 of 7) CpG 151 NM_001145425 9975 Hs.37288 NM_005126 HPRD:03809 NR1D2 BD73|EAR-1R|RVR nuclear receptor subfamily 1, group D, member 2 protein-coding 561_WT_peak_5630 chr4 159968608 159968786 + 56 NA Intergenic Intergenic -12364 NM_152543 152940 Hs.415576 NM_152543 C4orf45 - chromosome 4 open reading frame 45 protein-coding 561_WT_peak_4356 chr2 170430381 170430555 + 56 NA promoter-TSS (NM_024622) promoter-TSS (NM_024622) -37 NM_024622 79675 Hs.529276 NM_024622 HPRD:07969 FASTKD1 - FAST kinase domains 1 protein-coding 561_WT_peak_6645 chr7 38272832 38273030 + 56 NA Intergenic Intergenic 40317 NM_001003806 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2 TCR gamma alternate reading frame protein protein-coding 561_WT_peak_5676 chr5 21459463 21459803 + 56 NA promoter-TSS (NR_027027) promoter-TSS (NR_027027) 44 NR_027027 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - glucuronidase, beta pseudogene 1 pseudo 561_WT_peak_463 chr1 147753402 147753576 + 56 NA intron (NR_102404, intron 17 of 18).2 tRNA-His-CAY_|tRNA|tRNA -34147 NR_120331 101927468 Hs.515867 NR_120331 LOC101927468 - uncharacterized LOC101927468 ncRNA 561_WT_peak_3766 chr19 40476550 40476858 + 56 NA promoter-TSS (NM_153001) promoter-TSS (NM_153001) -208 NM_153001 5704 Hs.211594 NM_006503 HPRD:04085 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome (prosome, macropain) 26S subunit, ATPase, 4 protein-coding 561_WT_peak_1181 chr11 695901 696245 + 56 NA promoter-TSS (NM_021008) promoter-TSS (NM_021008) -319 NM_001293634 10522 Hs.243994 NM_021008 HPRD:04027 DEAF1 MRD24|NUDR|SPN|ZMYND5 DEAF1 transcription factor protein-coding 561_WT_peak_1084 chr10 89577551 89577856 + 56 NA promoter-TSS (NR_028492) promoter-TSS (NR_028492) 214 NM_032810 84896 Hs.435948 NM_032810 HPRD:12499 ATAD1 AFDC1|THORASE ATPase family, AAA domain containing 1 protein-coding 561_WT_peak_3043 chr17 8844841 8845155 + 56 NA intron (NM_001251851, intron 1 of 18) intron (NM_001251851, intron 1 of 18) 24031 NM_001251853 23533 Hs.278901 NM_014308 HPRD:11433 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase, regulatory subunit 5 protein-coding 561_WT_peak_7404 chr9 117459511 117459726 + 56 NA Intergenic Intergenic -15249 NM_001199233 100505478 Hs.200101 NM_001199233 LOC100505478 - uncharacterized LOC100505478 protein-coding 561_WT_peak_4374 chr2 175617262 175617518 + 56 NA intron (NM_001039523, intron 7 of 9) L2a|LINE|L2 11810 NM_001039523 1134 Hs.434479 NM_000079 HPRD:00007 CHRNA1 ACHRA|ACHRD|CHRNA|CMS2A|FCCMS|SCCMS cholinergic receptor, nicotinic, alpha 1 (muscle) protein-coding 561_WT_peak_4159 chr2 75904498 75904707 + 56 NA intron (NM_001201334, intron 12 of 16) MER20|DNA|hAT-Charlie 30693 NM_014763 9801 Hs.44024 NM_014763 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 561_WT_peak_5669 chr5 6712823 6713030 + 56 NA Intergenic CpG -1792 NM_006999 11044 Hs.481542 NM_006999 HPRD:09239 PAPD7 LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 PAP associated domain containing 7 protein-coding 561_WT_peak_6946 chr8 22876705 22876820 + 56 NA TTS (NM_147187) TTS (NM_147187) 19670 NM_015178 23221 Hs.372688 NM_015178 HPRD:06300 RHOBTB2 DBC2 Rho-related BTB domain containing 2 protein-coding 561_WT_peak_569 chr1 158979386 158979890 + 56 NA promoter-TSS (NM_005531) promoter-TSS (NM_005531) -44 NM_005531 3428 Hs.380250 NM_005531 HPRD:00969 IFI16 IFNGIP1|PYHIN2 interferon, gamma-inducible protein 16 protein-coding 561_WT_peak_1215 chr11 14436827 14436999 + 56 NA Intergenic Intergenic -50861 NM_001177314 22800 Hs.502004 NM_012250 HPRD:02518 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 561_WT_peak_3261 chr17 56296652 56296953 + 56 NA promoter-TSS (NM_017777) promoter-TSS (NM_017777) -136 NM_017777 54903 Hs.408843 NM_017777 HPRD:07900 MKS1 BBS13|MES|MKS|POC12 Meckel syndrome, type 1 protein-coding 561_WT_peak_5393 chr4 1724955 1725160 + 56 NA intron (NM_006342, intron 1 of 15) intron (NM_006342, intron 1 of 15) 1840 NM_006342 10460 Hs.104019 NM_006342 HPRD:05601 TACC3 ERIC-1|ERIC1 transforming, acidic coiled-coil containing protein 3 protein-coding 561_WT_peak_1985 chr13 33001112 33001277 + 56 NA intron (NM_001286459, intron 1 of 5) L2c|LINE|L2 1121 NM_001286460 90634 Hs.732118 NM_052818 HPRD:12384 N4BP2L1 CG018 NEDD4 binding protein 2-like 1 protein-coding 561_WT_peak_169 chr1 35544808 35545114 + 56 NA promoter-TSS (NM_024772) promoter-TSS (NM_024772) -3 NM_001289091 79830 Hs.471243 NM_024772 HPRD:15739 ZMYM1 MYM zinc finger, MYM-type 1 protein-coding 561_WT_peak_4927 chr22 40440336 40440507 + 56 NA promoter-TSS (NM_001024843) promoter-TSS (NM_001024843) -400 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing 6B protein-coding 561_WT_peak_2422 chr15 35261724 35262135 + 56 NA promoter-TSS (NM_014691) promoter-TSS (NM_014691) 66 NM_014691 9716 Hs.510958 NM_014691 HPRD:12468 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 561_WT_peak_3487 chr18 34408808 34409065 + 56 NA promoter-TSS (NM_020776) promoter-TSS (NM_020776) -144 NM_020776 57536 Hs.4045 NM_020776 HPRD:17211 KIAA1328 - KIAA1328 protein-coding 561_WT_peak_6748 chr7 92076609 92076798 + 56 NA promoter-TSS (NM_021167) promoter-TSS (NM_021167) -59 NM_021167 57798 Hs.21145 NM_021167 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 561_WT_peak_3471 chr18 23670269 23670581 + 56 NA intron (NM_001007559, intron 1 of 10) CpG 186 NM_001007559 6760 Hs.129261 NM_005637 HPRD:02559 SS18 SSXT|SYT synovial sarcoma translocation, chromosome 18 protein-coding 561_WT_peak_957 chr10 38691376 38691568 + 56 NA intron (NR_027269, intron 1 of 3) CpG 308 NR_027269 285961 Hs.406568 NR_027269 SEPT7P9 CDC10L|SEPT7L|bA291L22.2 septin 7 pseudogene 9 pseudo 561_WT_peak_5638 chr4 170533394 170533638 + 56 NA 5' UTR (NM_012224, exon 1 of 34) 5' UTR (NM_012224, exon 1 of 34) 262 NM_012224 4750 Hs.481181 NM_012224 HPRD:06847 NEK1 NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA-related kinase 1 protein-coding 561_WT_peak_1200 chr11 9082483 9082699 + 56 NA intron (NM_001170690, intron 7 of 17) intron (NM_001170690, intron 7 of 17) 29335 NR_049874 100847015 NR_049874 MIR5691 - microRNA 5691 ncRNA 561_WT_peak_2591 chr15 89090000 89090223 + 56 NA promoter-TSS (NM_017996) promoter-TSS (NM_017996) -199 NR_026645 55070 Hs.690871 NM_017996 HPRD:13140 DET1 - de-etiolated homolog 1 (Arabidopsis) protein-coding 561_WT_peak_5406 chr4 6692120 6692369 + 56 NA Intergenic Intergenic -3322 NM_005980 6286 Hs.2962 NM_005980 S100P MIG9 S100 calcium binding protein P protein-coding 561_WT_peak_4213 chr2 96823588 96823816 + 56 NA Intergenic Intergenic -12523 NM_004418 1844 Hs.1183 NM_004418 HPRD:04348 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 561_WT_peak_5145 chr3 67706249 67706612 + 56 NA intron (NR_109993, intron 1 of 3) LTR12|LTR|ERV1 1309 NR_109992 101927111 Hs.518057 NR_109992 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 561_WT_peak_5656 chr4 190862115 190862406 + 56 NA intron (NM_004477, intron 1 of 8) CpG 286 NM_004477 2483 Hs.203772 NM_004477 HPRD:03176 FRG1 FRG1A|FSG1 FSHD region gene 1 protein-coding 561_WT_peak_4942 chr22 42000031 42000270 + 56 NA exon (NM_015704, exon 4 of 6) exon (NM_015704, exon 4 of 6) -14279 NM_002676 5372 Hs.75835 NM_002676 HPRD:03473 PMM1 Sec53 phosphomannomutase 1 protein-coding 561_WT_peak_4221 chr2 97202903 97203112 + 56 NA intron (NM_212481, intron 1 of 6) CpG 543 NM_212481 10865 Hs.920 NM_006673 HPRD:12481 ARID5A MRF-1|MRF1|RP11-363D14 AT rich interactive domain 5A (MRF1-like) protein-coding 561_WT_peak_6961 chr8 29347976 29348341 + 56 NA Intergenic Intergenic -139891 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 561_WT_peak_4882 chr22 30988018 30988204 + 56 NA promoter-TSS (NM_014303) promoter-TSS (NM_014303) -184 NM_001243225 23481 Hs.517543 NM_014303 HPRD:05783 PES1 PES pescadillo ribosomal biogenesis factor 1 protein-coding 561_WT_peak_3456 chr18 19284531 19284761 + 56 NA 5' UTR (NM_138340, exon 1 of 9) 5' UTR (NM_138340, exon 1 of 9) 120 NM_138340 171586 Hs.397978 NM_138340 HPRD:12405 ABHD3 LABH3 abhydrolase domain containing 3 protein-coding 561_WT_peak_2863 chr16 58768137 58768332 + 56 NA promoter-TSS (NM_002080) promoter-TSS (NM_002080) 27 NM_002080 2806 Hs.599470 NM_002080 HPRD:00684 GOT2 KAT4|KATIV|mitAAT glutamic-oxaloacetic transaminase 2, mitochondrial protein-coding 561_WT_peak_1822 chr12 98987429 98987799 + 56 NA 5' UTR (NM_213611, exon 1 of 7) 5' UTR (NM_213611, exon 1 of 7) 211 NM_005888 5250 Hs.290404 NM_002635 HPRD:02654 SLC25A3 PHC|PTP solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 protein-coding 561_WT_peak_2656 chr16 2255334 2255584 + 56 NA promoter-TSS (NM_001199174) promoter-TSS (NM_001199174) -273 NM_001199174 64223 Hs.29203 NM_022372 HPRD:17031 MLST8 GBL|GbetaL|LST8|POP3|WAT1 MTOR associated protein, LST8 homolog (S. cerevisiae) protein-coding 561_WT_peak_6834 chr7 127496916 127497120 + 56 NA intron (NM_014390, intron 12 of 23) intron (NM_014390, intron 12 of 23) -140544 NR_027330 27099 Hs.657377 NM_014411 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 (non-protein coding) ncRNA 561_WT_peak_5174 chr3 99979867 99980110 + 56 NA intron (NM_001199198, intron 1 of 18) CpG 327 NM_001199198 55773 Hs.477003 NM_018309 HPRD:07727 TBC1D23 NS4ATP1 TBC1 domain family, member 23 protein-coding 561_WT_peak_1595 chr12 10766357 10766569 + 56 NA promoter-TSS (NM_018048) promoter-TSS (NM_018048) -255 NM_018048 55110 Hs.104650 NM_018048 MAGOHB MGN2|mago|magoh mago-nashi homolog B (Drosophila) protein-coding 561_WT_peak_3287 chr17 59299078 59299350 + 56 NA intron (NM_017679, intron 22 of 23) MIRb|SINE|MIR 177753 NR_125749 103689912 Hs.410998 NR_125749 TBX2-AS1 - TBX2 antisense RNA 1 ncRNA 561_WT_peak_2043 chr13 49106493 49106696 + 55 NA intron (NM_001286830, intron 1 of 13) CpG 798 NM_001268 1102 Hs.652712 NM_001268 HPRD:04631 RCBTB2 CHC1L|RLG regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 protein-coding 561_WT_peak_3818 chr19 47458823 47459174 + 55 NA intron (NM_004491, intron 2 of 5) intron (NM_004491, intron 2 of 5) 37065 NM_004491 2909 Hs.509447 NM_004491 HPRD:05592 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 561_WT_peak_6659 chr7 44677916 44678226 + 55 NA intron (NM_001003941, intron 2 of 8) intron (NM_001003941, intron 2 of 8) 31950 NM_002541 4967 Hs.488181 NM_002541 HPRD:08938 OGDH AKGDH|E1k|OGDC oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) protein-coding 561_WT_peak_7431 chr9 130186381 130186710 + 55 NA promoter-TSS (NM_001286697) promoter-TSS (NM_001286697) -108 NM_001286697 7633 Hs.522399 NM_007135 HPRD:01931 ZNF79 pT7 zinc finger protein 79 protein-coding 561_WT_peak_5057 chr3 33840261 33840431 + 55 NA exon (NM_001162429, exon 1 of 18) exon (NM_001162429, exon 1 of 18) 283 NM_001162429 10015 Hs.475896 NM_013374 HPRD:06425 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 561_WT_peak_1149 chr10 115614499 115614936 + 55 NA promoter-TSS (NM_014881) promoter-TSS (NM_014881) 326 NM_198514 374354 Hs.369924 NM_198514 NHLRC2 - NHL repeat containing 2 protein-coding 561_WT_peak_6683 chr7 64466817 64467012 + 55 NA intron (NM_001007253, intron 1 of 1) intron (NM_001007253, intron 1 of 1) 210 NM_001007253 2086 Hs.250693 NM_001007253 HPRD:15919 ERV3-1 ERV-R|ERV3|ERVR|HERV-R|HERVR|envR endogenous retrovirus group 3, member 1 protein-coding 561_WT_peak_6583 chr7 6617073 6617246 + 55 NA promoter-TSS (NM_001134389) promoter-TSS (NM_001134389) 94 NM_001134389 55146 Hs.5268 NM_018106 HPRD:15719 ZDHHC4 ZNF374 zinc finger, DHHC-type containing 4 protein-coding 561_WT_peak_5912 chr5 132083415 132083725 + 55 NA exon (NM_001287253, exon 1 of 6) exon (NM_001287253, exon 1 of 6) 433 NM_001039780 645121 Hs.522057 NM_001039780 ENSG00000205089 CCNI2 - cyclin I family, member 2 protein-coding 561_WT_peak_5844 chr5 86563871 86564072 + 55 NA promoter-TSS (NM_022650) promoter-TSS (NM_022650) -99 NM_002890 5921 Hs.664080 NM_002890 HPRD:00745 RASA1 CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP RAS p21 protein activator (GTPase activating protein) 1 protein-coding 561_WT_peak_5633 chr4 164087273 164087396 + 55 NA intron (NM_138386, intron 1 of 7) intron (NM_138386, intron 1 of 7) 739 NM_138386 92345 Hs.129095 NM_138386 HPRD:10054 NAF1 - nuclear assembly factor 1 ribonucleoprotein protein-coding 561_WT_peak_2925 chr16 82204018 82204357 + 55 NA promoter-TSS (NM_005792) promoter-TSS (NM_005792) -358 NM_005792 10200 Hs.344400 NM_005792 HPRD:16111 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 561_WT_peak_510 chr1 150241422 150241622 + 55 NA promoter-TSS (NM_001243772) promoter-TSS (NM_001243772) 87 NM_001243771 51107 Hs.108408 NM_016022 ENSG00000117362 APH1A 6530402N02Rik|APH-1|APH-1A|CGI-78 APH1A gamma secretase subunit protein-coding 561_WT_peak_4166 chr2 85554822 85555021 + 55 NA intron (NM_001206840, intron 1 of 3) CpG 498 NM_001206840 10618 Hs.593382 NM_006464 HPRD:04343 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 561_WT_peak_5751 chr5 54368637 54368913 + 55 NA Intergenic Intergenic -29699 NM_006144 3001 Hs.90708 NM_006144 HPRD:00771 GZMA CTLA3|HFSP granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) protein-coding 561_WT_peak_5568 chr4 103748757 103749054 + 55 NA promoter-TSS (NM_181892) promoter-TSS (NM_181892) -195 NM_181887 7323 Hs.518773 NM_003340 HPRD:04269 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin-conjugating enzyme E2D 3 protein-coding 561_WT_peak_1396 chr11 68227526 68227745 + 55 NA promoter-TSS (NM_001164164) promoter-TSS (NM_001164164) -551 NM_001164163 55291 Hs.503022 NM_018312 HPRD:10703 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6, regulatory subunit 3 protein-coding 561_WT_peak_5776 chr5 65221581 65221875 + 55 NA promoter-TSS (NM_001253697) promoter-TSS (NM_001253697) -654 NM_001253701 55914 Hs.591774 NM_018695 HPRD:06090 ERBB2IP ERBIN|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 561_WT_peak_2076 chr13 77903407 77903613 + 55 NA Intergenic CpG -2333 NM_015057 23077 Hs.591221 NM_015057 HPRD:10104 MYCBP2 PAM MYC binding protein 2, E3 ubiquitin protein ligase protein-coding 561_WT_peak_5026 chr3 16553463 16553655 + 55 NA intron (NM_015150, intron 1 of 9) intron (NM_015150, intron 1 of 9) 1663 NM_015150 23180 Hs.98910 NM_015150 HPRD:17950 RFTN1 PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 561_WT_peak_4449 chr2 204676359 204676542 + 55 NA Intergenic L2|LINE|L2 -56061 NM_001037631 1493 Hs.247824 NM_005214 HPRD:00474 CTLA4 CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte-associated protein 4 protein-coding 561_WT_peak_131 chr1 27160086 27160292 + 55 NA intron (NM_032283, intron 2 of 7) intron (NM_032283, intron 2 of 7) 6988 NM_032283 84243 Hs.523710 NM_032283 ZDHHC18 DHHC-18|DHHC18 zinc finger, DHHC-type containing 18 protein-coding 561_WT_peak_2971 chr17 1531907 1532144 + 55 NA promoter-TSS (NM_001284498) promoter-TSS (NM_001284498) 155 NM_152346 124935 Hs.160550 NM_152346 HPRD:15390 SLC43A2 LAT4 solute carrier family 43 (amino acid system L transporter), member 2 protein-coding 561_WT_peak_6859 chr7 138437267 138437458 + 55 NA intron (NM_130840, intron 10 of 20) intron (NM_130840, intron 10 of 20) 21420 NM_130841 50617 Hs.98967 NM_020632 HPRD:05576 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase, H+ transporting, lysosomal V0 subunit a4 protein-coding 561_WT_peak_2714 chr16 18813105 18813357 + 55 NA promoter-TSS (NM_015161) promoter-TSS (NM_015161) -374 NM_015161 23204 Hs.634882 NM_015161 HPRD:09641 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP-ribosylation factor-like 6 interacting protein 1 protein-coding 561_WT_peak_4626 chr20 35917963 35918275 + 55 NA promoter-TSS (NM_022077) promoter-TSS (NM_022077) 68 NM_022077 63905 Hs.6126 NM_022077 HPRD:14356 MANBAL - mannosidase, beta A, lysosomal-like protein-coding 561_WT_peak_5020 chr3 15140383 15140739 + 55 NA promoter-TSS (NM_022340) promoter-TSS (NM_022340) 94 NM_022340 64145 Hs.475565 NM_022340 HPRD:15732 ZFYVE20 Rabenosyn-5 zinc finger, FYVE domain containing 20 protein-coding 561_WT_peak_4210 chr2 96676117 96676399 + 55 NA promoter-TSS (NR_003698) promoter-TSS (NR_003698) -41 NR_003698 729234 Hs.720108 NR_003698 ENSG00000231584 FAHD2CP - fumarylacetoacetate hydrolase domain containing 2C, pseudogene pseudo 561_WT_peak_2875 chr16 68027358 68027509 + 55 NA intron (NM_022355, intron 1 of 10) intron (NM_022355, intron 1 of 10) 5988 NM_022355 64174 Hs.372633 NM_022355 HPRD:07011 DPEP2 MBD2 dipeptidase 2 protein-coding 561_WT_peak_5208 chr3 112738217 112738825 + 55 NA promoter-TSS (NM_015412) promoter-TSS (NM_015412) 34 NM_015412 25871 Hs.591288 NM_015412 HPRD:08524 C3orf17 NET17 chromosome 3 open reading frame 17 protein-coding 561_WT_peak_710 chr1 207509907 207510209 + 55 NA exon (NM_000574, exon 7 of 10) exon (NM_000574, exon 7 of 10) 15241 NM_001300904 1604 Hs.126517 NM_000574 HPRD:00500 CD55 CR|CROM|DAF|TC CD55 molecule, decay accelerating factor for complement (Cromer blood group) protein-coding 561_WT_peak_5250 chr3 128902793 128903081 + 55 NA promoter-TSS (NM_001127196) promoter-TSS (NM_001127196) -127 NM_003418 7555 Hs.518249 NM_003418 HPRD:00311 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger, nucleic acid binding protein protein-coding 561_WT_peak_6652 chr7 43908912 43909082 + 55 NA intron (NM_001204871, intron 4 of 6) CpG 148 NM_032014 64951 Hs.284286 NM_032014 HPRD:17593 MRPS24 MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 561_WT_peak_7434 chr9 130545311 130545544 + 55 NA Intergenic Intergenic -2685 NR_039767 100616250 NR_039767 miRBase:MI0016964 MIR3960 - microRNA 3960 ncRNA 561_WT_peak_7417 chr9 125667535 125668017 + 55 NA promoter-TSS (NM_018835) promoter-TSS (NM_018835) -214 NM_001100588 54542 Hs.533499 NM_018835 HPRD:14726 RC3H2 MNAB|RNF164 ring finger and CCCH-type domains 2 protein-coding 561_WT_peak_6787 chr7 102134989 102135290 + 55 NA intron (NM_001277335, intron 13 of 19) CpG-24752 -15758 NM_006234 5439 Hs.654952 NM_006234 HPRD:16038 POLR2J POLR2J1|RPB11|RPB11A|RPB11m|hRPB14 polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa protein-coding 561_WT_peak_6958 chr8 29087154 29087341 + 55 NA intron (NM_015254, intron 2 of 39) intron (NM_015254, intron 2 of 39) 33363 NM_015254 23303 Hs.444767 NM_015254 HPRD:09556 KIF13B GAKIN kinesin family member 13B protein-coding 561_WT_peak_5729 chr5 43121704 43121952 + 55 NA intron (NR_123720, intron 1 of 5) CpG 218 NM_001297548 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 561_WT_peak_4657 chr20 46116075 46116311 + 55 NA Intergenic L1MEd|LINE|L1 -14408 NM_001174087 8202 Hs.592142 NM_006534 HPRD:03570 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 561_WT_peak_2978 chr17 2239820 2240136 + 55 NA promoter-TSS (NM_001098509) promoter-TSS (NM_001098509) 700 NM_018128 55720 Hs.388170 NM_018128 HPRD:07681 TSR1 - TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) protein-coding 561_WT_peak_7379 chr9 106855881 106856138 + 55 NA promoter-TSS (NM_001265602) promoter-TSS (NM_001265602) -532 NM_001265602 10592 Hs.119023 NM_006444 HPRD:09277 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 561_WT_peak_4173 chr2 86080881 86081058 + 55 NA intron (NM_001042437, intron 3 of 6) intron (NM_001042437, intron 3 of 6) 13824 NM_001042437 8869 Hs.415117 NM_003896 HPRD:05098 ST3GAL5 SATI|SIAT9|SIATGM3S|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 561_WT_peak_3592 chr19 5828417 5828651 + 55 NA TTS (NM_004558) TTS (NM_004558) 4716 NM_004558 4902 Hs.234775 NM_004558 HPRD:03604 NRTN NTN neurturin protein-coding 561_WT_peak_5074 chr3 42922569 42922739 + 55 NA Intergenic CpG -5021 NM_004391 1582 Hs.447793 NM_004391 HPRD:03705 CYP8B1 CP8B|CYP12 cytochrome P450, family 8, subfamily B, polypeptide 1 protein-coding 561_WT_peak_1410 chr11 73881940 73882300 + 55 NA promoter-TSS (NM_001271593) promoter-TSS (NM_001271593) 12 NM_016147 51400 Hs.503251 NM_016147 HPRD:17864 PPME1 PME-1 protein phosphatase methylesterase 1 protein-coding 561_WT_peak_5673 chr5 14809689 14809963 + 55 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 16295 NR_039780 100616271 NR_039780 MIR4637 - microRNA 4637 ncRNA 561_WT_peak_207 chr1 44412208 44412379 + 55 NA promoter-TSS (NM_014652) promoter-TSS (NM_014652) -185 NM_014652 9670 Hs.158497 NM_014652 HPRD:13742 IPO13 IMP13|KAP13|LGL2|RANBP13 importin 13 protein-coding 561_WT_peak_4399 chr2 191879012 191879416 + 55 NA promoter-TSS (NM_007315) promoter-TSS (NM_007315) -238 NM_139266 6772 Hs.642990 NM_007315 HPRD:02777 STAT1 CANDF7|ISGF-3|STAT91 signal transducer and activator of transcription 1, 91kDa protein-coding 561_WT_peak_5071 chr3 42003024 42003256 + 55 NA intron (NM_017886, intron 1 of 36) CpG 520 NM_017886 54986 Hs.656192 NM_017886 HPRD:07928 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 561_WT_peak_5531 chr4 84156970 84157244 + 55 NA Intergenic L1M2|LINE|L1 48960 NM_015697 27235 Hs.144304 NM_015697 HPRD:13062 COQ2 CL640|COQ10D1|MSA1 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase protein-coding 561_WT_peak_5629 chr4 159644560 159644730 + 55 NA promoter-TSS (NM_005038) promoter-TSS (NM_005038) -93 NM_005038 5481 Hs.183958 NM_005038 HPRD:11875 PPID CYP-40|CYPD peptidylprolyl isomerase D protein-coding 561_WT_peak_454 chr1 146373796 146374024 + 55 NA promoter-TSS (NM_001278141) promoter-TSS (NM_001278141) 53 NM_001278141 149013 Hs.666981 NM_001278141 ENSG00000186275 NBPF12 COAS1|KIAA1245 neuroblastoma breakpoint family, member 12 protein-coding 561_WT_peak_7521 chrX 39714535 39714851 + 55 NA Intergenic MIRb|SINE|MIR 242026 NM_017745 54880 Hs.659681 NM_017745 HPRD:06458 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 561_WT_peak_3838 chr19 49224208 49224444 + 55 NA intron (NM_017805, intron 11 of 11) intron (NM_017805, intron 11 of 11) -1350 NM_001130915 284358 Hs.191815 NM_182574 HPRD:08204 MAMSTR MASTR MEF2 activating motif and SAP domain containing transcriptional regulator protein-coding 561_WT_peak_5743 chr5 52365516 52365753 + 55 NA intron (NR_073106, intron 16 of 29) intron (NR_073106, intron 16 of 29) 39968 NM_176806 4338 Hs.163645 NM_004531 HPRD:04750 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 561_WT_peak_1032 chr10 70849874 70850112 + 55 NA intron (NR_036430, intron 1 of 1) intron (NR_036430, intron 1 of 1) 2165 NR_036430 5552 Hs.1908 NM_002727 HPRD:01513 SRGN PPG|PRG|PRG1 serglycin protein-coding 561_WT_peak_5559 chr4 99916941 99917300 + 55 NA intron (NM_015143, intron 1 of 10) CpG 332 NM_015143 23173 Hs.480364 NM_015143 HPRD:10071 METAP1 MAP1A|MetAP1A methionyl aminopeptidase 1 protein-coding 561_WT_peak_5441 chr4 36324571 36324867 + 55 NA intron (NM_001136536, intron 7 of 8) intron (NM_001136536, intron 7 of 8) 39075 NM_001170700 401124 Hs.363407 NM_001136536 DTHD1 - death domain containing 1 protein-coding 561_WT_peak_3409 chr18 267885 268530 + 55 NA promoter-TSS (NM_005131) promoter-TSS (NM_005131) -148 NM_005131 9984 Hs.712543 NM_005131 HPRD:09498 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 561_WT_peak_435 chr1 144932082 144932315 + 55 NA 5' UTR (NM_001002811, exon 1 of 19) 5' UTR (NM_001002811, exon 1 of 19) 167 NM_001002811 9659 Hs.584841 NM_014644 HPRD:10482 PDE4DIP CMYA2|MMGL phosphodiesterase 4D interacting protein protein-coding 561_WT_peak_2091 chr13 103498158 103498636 + 55 NA 5' UTR (NM_000123, exon 1 of 15) 5' UTR (NM_000123, exon 1 of 15) 206 NM_000123 2073 Hs.258429 NM_000123 HPRD:00595 ERCC5 COFS3|ERCM2|UVDR|XPG|XPGC excision repair cross-complementation group 5 protein-coding 561_WT_peak_589 chr1 161432645 161432842 + 55 NA Intergenic CpG -42462 NM_021642 2212 Hs.352642 NM_021642 HPRD:00906 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding 561_WT_peak_5770 chr5 64064263 64064453 + 55 NA promoter-TSS (NM_001297644) promoter-TSS (NM_001297644) 138 NM_173829 285672 Hs.69504 NM_173829 HPRD:08210 SREK1IP1 P18SRP|SFRS12IP1 SREK1-interacting protein 1 protein-coding 561_WT_peak_6959 chr8 29207786 29208265 + 55 NA 5' UTR (NM_001394, exon 1 of 4) 5' UTR (NM_001394, exon 1 of 4) 242 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 561_WT_peak_2026 chr13 45563533 45563713 + 55 NA promoter-TSS (NM_012345) promoter-TSS (NM_012345) -10 NM_012345 26747 Hs.525006 NM_012345 HPRD:05073 NUFIP1 NUFIP|bA540M5.1 nuclear fragile X mental retardation protein interacting protein 1 protein-coding 561_WT_peak_4523 chr2 241505127 241505439 + 55 NA Intergenic Intergenic -2721 NM_018226 57140 Hs.5345 NM_018226 RNPEPL1 - arginyl aminopeptidase (aminopeptidase B)-like 1 protein-coding 561_WT_peak_3180 chr17 40440282 40440484 + 55 NA 5' UTR (NM_003152, exon 2 of 20) 5' UTR (NM_003152, exon 2 of 20) 309 NM_001288720 6776 Hs.437058 NM_003152 HPRD:03301 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 561_WT_peak_788 chr1 231376698 231376841 + 55 NA promoter-TSS (NM_014236) promoter-TSS (NM_014236) -150 NM_014236 8443 Hs.498028 NM_014236 HPRD:04120 GNPAT DAP-AT|DAPAT|DHAPAT glyceronephosphate O-acyltransferase protein-coding 561_WT_peak_5799 chr5 70220759 70221151 + 55 NA exon (NM_000344, exon 1 of 9) exon (NM_000344, exon 1 of 9) 187 NM_000344 6606 Hs.535788 NM_000344 HPRD:02646 SMN1 BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A survival of motor neuron 1, telomeric protein-coding 561_WT_peak_6894 chr7 149321575 149321642 + 55 NA intron (NR_027788, intron 1 of 7) CpG 273 NR_027788 79970 Hs.520785 NM_024910 HPRD:07791 ZNF767P ZNF767 zinc finger family member 767, pseudogene pseudo 561_WT_peak_478 chr1 148645735 148646057 + 55 NA intron (NR_104217, intron 2 of 17) MLT1N2|LTR|ERVL-MaLR 85049 NM_173638 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 561_WT_peak_5959 chr5 140027256 140027531 + 55 NA promoter-TSS (NM_002488) promoter-TSS (NM_002488) 9 NM_006083 3550 Hs.421245 NM_006083 HPRD:02771 IK CSA2|RED IK cytokine, down-regulator of HLA II protein-coding 561_WT_peak_3698 chr19 19976935 19977368 + 55 NA intron (NM_021047, intron 1 of 3) intron (NM_021047, intron 1 of 3) 437 NM_021047 56242 Hs.301059 NM_021047 ZNF253 BMZF-1|BMZF1|ZNF411 zinc finger protein 253 protein-coding 561_WT_peak_5319 chr3 170587448 170587615 + 54 NA intron (NM_001099645, intron 1 of 3) intron (NM_001099645, intron 1 of 3) 514 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22-like 1 protein-coding 561_WT_peak_83 chr1 17230743 17230923 + 54 NA Intergenic Intergenic -17612 NM_014675 9696 Hs.309403 NM_014675 HPRD:16758 CROCC ROLT ciliary rootlet coiled-coil, rootletin protein-coding 561_WT_peak_278 chr1 67628724 67628910 + 54 NA Intergenic Intergenic -3352 NM_144701 149233 Hs.677426 NM_144701 HPRD:16249 IL23R - interleukin 23 receptor protein-coding 561_WT_peak_5507 chr4 77996818 77997012 + 54 NA 5' UTR (NM_006835, exon 1 of 7) 5' UTR (NM_006835, exon 1 of 7) 210 NM_006835 10983 Hs.518827 NM_006835 HPRD:16690 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 561_WT_peak_1281 chr11 47885062 47885167 + 54 NA Intergenic Intergenic -15057 NM_015231 23279 Hs.744107 NM_015231 HPRD:16254 NUP160 - nucleoporin 160kDa protein-coding 561_WT_peak_322 chr1 92951563 92951786 + 54 NA promoter-TSS (NM_001127216) promoter-TSS (NM_001127216) -46 NM_001127216 2672 Hs.73172 NM_005263 HPRD:07527 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcription repressor protein-coding 561_WT_peak_2603 chr15 91141008 91141232 + 54 NA intron (NM_001042574, intron 3 of 14) L1M6|LINE|L1 -62345 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LOC101929765 - uncharacterized LOC101929765 ncRNA 561_WT_peak_4897 chr22 36902979 36903301 + 54 NA promoter-TSS (NM_024955) promoter-TSS (NM_024955) 8 NM_001102371 80020 Hs.387601 NM_024955 HPRD:08666 FOXRED2 ERFAD FAD-dependent oxidoreductase domain containing 2 protein-coding 561_WT_peak_2302 chr14 76618621 76618825 + 54 NA intron (NM_017926, intron 1 of 9) intron (NM_017926, intron 1 of 9) 495 NM_017926 55668 Hs.410231 NM_017926 HPRD:16594 GPATCH2L C14orf118 G patch domain containing 2-like protein-coding 561_WT_peak_5678 chr5 32312816 32313089 + 54 NA 5' UTR (NM_001294344, exon 1 of 14) 5' UTR (NM_001294344, exon 1 of 14) 162 NM_001040446 54545 Hs.481836 NM_019061 HPRD:05933 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 561_WT_peak_5827 chr5 78525449 78525690 + 54 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -6356 NM_152405 133746 Hs.482605 NM_152405 HPRD:05045 JMY WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 561_WT_peak_6333 chr6 43351560 43352065 + 54 NA Intergenic LTR67B|LTR|ERVL -14631 NM_014345 24149 Hs.509718 NM_014345 HPRD:11707 ZNF318 TZF|ZFP318 zinc finger protein 318 protein-coding 561_WT_peak_7370 chr9 100819102 100819281 + 54 NA exon (NM_018946, exon 1 of 6) exon (NM_018946, exon 1 of 6) 232 NM_018946 54187 Hs.522310 NM_018946 HPRD:07285 NANS HEL-S-100|SAS N-acetylneuraminic acid synthase protein-coding 561_WT_peak_2500 chr15 58837692 58837874 + 54 NA intron (NM_000236, intron 4 of 8) intron (NM_000236, intron 4 of 8) -46849 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LOC101928694 - uncharacterized LOC101928694 ncRNA 561_WT_peak_6535 chr6 158589462 158589759 + 54 NA promoter-TSS (NR_073096) promoter-TSS (NR_073096) 231 NM_207118 404672 Hs.356224 NM_207118 HPRD:10581 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTDA|bA120J8.2 general transcription factor IIH, polypeptide 5 protein-coding 561_WT_peak_4790 chr21 37692861 37693077 + 54 NA intron (NM_015358, intron 1 of 16) CpG 482 NM_015358 23515 Hs.421150 NM_015358 HPRD:10316 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 561_WT_peak_5021 chr3 15247760 15247930 + 54 NA promoter-TSS (NR_027927) promoter-TSS (NR_027927) 112 NM_014296 23473 Hs.595234 NM_014296 HPRD:05908 CAPN7 CALPAIN7|PALBH calpain 7 protein-coding 561_WT_peak_294 chr1 78148306 78148502 + 54 NA promoter-TSS (NM_015534) promoter-TSS (NM_015534) -61 NM_015534 26009 Hs.480506 NM_015534 HPRD:15907 ZZZ3 ATAC1 zinc finger, ZZ-type containing 3 protein-coding 561_WT_peak_6734 chr7 76751099 76751274 + 54 NA promoter-TSS (NM_020879) promoter-TSS (NM_020879) -748 NM_020879 57639 Hs.113940 NM_020879 HPRD:11150 CCDC146 - coiled-coil domain containing 146 protein-coding 561_WT_peak_5342 chr3 183966532 183966713 + 54 NA promoter-TSS (NM_032331) promoter-TSS (NM_032331) 137 NM_005787 10195 Hs.478481 NM_005787 HPRD:03067 ALG3 CDG1D|CDGS4|D16Ertd36e|NOT56L|Not56 ALG3, alpha-1,3- mannosyltransferase protein-coding 561_WT_peak_5956 chr5 139722064 139722235 + 54 NA intron (NM_001945, intron 3 of 5) intron (NM_001945, intron 3 of 5) 4039 NM_001945 1839 Hs.799 NM_001945 HPRD:00526 HBEGF DTR|DTS|DTSF|HEGFL heparin-binding EGF-like growth factor protein-coding 561_WT_peak_7119 chr8 119068629 119068814 + 54 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 55337 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 561_WT_peak_911 chr10 22622367 22622583 + 54 NA Intergenic Intergenic -11899 NM_172242 9576 Hs.655170 NM_012443 HPRD:09305 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 561_WT_peak_1051 chr10 75490113 75490490 + 54 NA promoter-TSS (NR_048575) promoter-TSS (NR_048575) -29 NR_026592 729096 Hs.709171 NR_026592 BMS1P4 BMS1LP4 BMS1 pseudogene 4 pseudo 561_WT_peak_1338 chr11 64781662 64781838 + 54 NA intron (NR_037650, intron 1 of 10) CpG 165 NR_037650 100528018 Hs.80132 NR_037650 ARL2-SNX15 - ARL2-SNX15 readthrough (NMD candidate) ncRNA 561_WT_peak_35 chr1 6663256 6663444 + 54 NA promoter-TSS (NM_014851) promoter-TSS (NM_014851) -421 NM_014851 9903 Hs.7764 NM_014851 HPRD:17239 KLHL21 - kelch-like family member 21 protein-coding 561_WT_peak_6009 chr5 159894834 159895079 + 54 NA Intergenic Intergenic -6453 NR_036095 100422938 NR_036095 MIR3142 - microRNA 3142 ncRNA 561_WT_peak_5350 chr3 186600726 186600920 + 54 NA Intergenic MER44B|DNA|TcMar-Tigger -26911 NR_046662 100874095 Hs.80485 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 561_WT_peak_5596 chr4 140098538 140098719 + 54 NA Intergenic CpG -37998 NM_201999 1998 Hs.634040 NM_006874 HPRD:16856 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74-like factor 2 (ets domain transcription factor) protein-coding 561_WT_peak_2672 chr16 3332944 3333254 + 54 NA promoter-TSS (NM_005741) promoter-TSS (NM_005741) -388 NM_005741 10127 Hs.611475 NM_005741 HPRD:05008 ZNF263 FPM315|ZKSCAN12|ZSCAN44 zinc finger protein 263 protein-coding 561_WT_peak_2465 chr15 45021277 45021475 + 54 NA non-coding (NR_125376, exon 1 of 2) non-coding (NR_125376, exon 1 of 2) 190 NR_125376 100419583 Hs.489254 NR_125376 LOC100419583 - ring finger protein 4 pseudogene pseudo 561_WT_peak_2362 chr14 100545424 100545635 + 54 NA intron (NM_016337, intron 1 of 13) intron (NM_016337, intron 1 of 13) 13778 NM_016337 51466 Hs.125867 NM_016337 HPRD:10942 EVL RNB6 Enah/Vasp-like protein-coding 561_WT_peak_4669 chr20 48151620 48152066 + 54 NA intron (NM_000961, intron 5 of 9) L1M5|LINE|L1 32864 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 561_WT_peak_5569-2 chr4 103789733 103789769 + 54 NA promoter-TSS (NM_001008388) promoter-TSS (NM_001008388) 299 NM_181893 7323 Hs.518773 NM_003340 HPRD:04269 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin-conjugating enzyme E2D 3 protein-coding 561_WT_peak_384 chr1 112289966 112290198 + 54 NA non-coding (NR_038951, exon 3 of 3) non-coding (NR_038951, exon 3 of 3) 7619 NR_038951 100506343 Hs.485810 NR_038951 ENSG00000227811 FAM212B-AS1 - FAM212B antisense RNA 1 ncRNA 561_WT_peak_6577 chr7 4814966 4815136 + 54 NA promoter-TSS (NM_014855) promoter-TSS (NM_014855) -211 NM_014855 9907 Hs.558440 NM_014855 AP5Z1 KIAA0415|SPG48|zeta adaptor-related protein complex 5, zeta 1 subunit protein-coding 561_WT_peak_5853 chr5 93913663 93913899 + 54 NA intron (NM_173665, intron 2 of 4) intron (NM_173665, intron 2 of 4) 40528 NM_173665 285600 Hs.425123 NM_173665 HPRD:11337 KIAA0825 C5orf36 KIAA0825 protein-coding 561_WT_peak_4300 chr2 131130037 131130344 + 54 NA intron (NM_014369, intron 13 of 14) CpG-15539 16610 NM_001142370 26469 Hs.516390 NM_014369 HPRD:05961 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase, non-receptor type 18 (brain-derived) protein-coding 561_WT_peak_4541 chr20 1640995 1641220 + 54 NA Intergenic Intergenic -2682 NM_001039508 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal-regulatory protein gamma protein-coding 561_WT_peak_6860 chr7 138720499 138720774 + 54 NA exon (NM_080660, exon 1 of 5) exon (NM_080660, exon 1 of 5) 139 NM_080660 92092 Hs.512833 NM_080660 HPRD:14440 ZC3HAV1L C7orf39 zinc finger CCCH-type, antiviral 1-like protein-coding 561_WT_peak_1457 chr11 94801786 94801799 + 54 NA 3' UTR (NM_032102, exon 1 of 1) 3' UTR (NM_032102, exon 1 of 1) 1751 NR_103726 10929 Hs.476680 NM_032102 SRSF8 DSM-1|SFRS2B|SRP46 serine/arginine-rich splicing factor 8 protein-coding 561_WT_peak_1968 chr13 27825493 27825858 + 54 NA promoter-TSS (NM_000982) promoter-TSS (NM_000982) -17 NM_000982 6144 Hs.381123 NM_000982 HPRD:04700 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 561_WT_peak_3932 chr19 58838252 58838544 + 54 NA promoter-TSS (NM_181846) promoter-TSS (NM_181846) 13 NM_181846 342945 Hs.388162 NM_181846 HPRD:01315 ZSCAN22 HKR2|ZNF50 zinc finger and SCAN domain containing 22 protein-coding 561_WT_peak_875 chr10 8175147 8175446 + 54 NA Intergenic Intergenic 78629 NM_001002295 2625 Hs.524134 NM_002051 HPRD:00572 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 561_WT_peak_6675 chr7 56118877 56119174 + 54 NA promoter-TSS (NM_001762) promoter-TSS (NM_001762) 243 NM_004577 5723 Hs.512656 NM_004577 HPRD:01406 PSPH PSP|PSPHD phosphoserine phosphatase protein-coding 561_WT_peak_2839 chr16 50186501 50186790 + 54 NA promoter-TSS (NM_001040285) promoter-TSS (NM_001040285) -184 NM_001040284 64282 Hs.514342 NM_022447 HPRD:16119 PAPD5 TRF4-2 PAP associated domain containing 5 protein-coding 561_WT_peak_3526 chr18 67612498 67612577 + 54 NA intron (NM_006566, intron 3 of 6) MIRc|SINE|MIR 11695 NM_006566 10666 Hs.660130 NM_006566 HPRD:09252 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 561_WT_peak_7252 chr9 36258068 36258436 + 54 NA intron (NM_001128227, intron 1 of 11) CpG 244 NM_001190383 10020 Hs.5920 NM_005476 HPRD:04825 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 561_WT_peak_6004 chr5 158836892 158837062 + 54 NA Intergenic L1MB2|LINE|L1 56307 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 561_WT_peak_7171 chr8 141522301 141522494 + 54 NA intron (NR_040712, intron 1 of 2) CpG 316 NR_040712 54108 Hs.279704 NM_017444 HPRD:06275 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 561_WT_peak_6693 chr7 66385958 66386175 + 54 NA promoter-TSS (NM_017994) promoter-TSS (NM_017994) -137 NM_017994 55069 Hs.488478 NM_017994 HPRD:08541 TMEM248 C7orf42 transmembrane protein 248 protein-coding 561_WT_peak_7407 chr9 117665159 117665210 + 54 NA 3' UTR (NM_001244, exon 4 of 4) 3' UTR (NM_001244, exon 4 of 4) 27691 NM_001244 944 Hs.494901 NM_001244 TNFSF8 CD153|CD30L|CD30LG tumor necrosis factor (ligand) superfamily, member 8 protein-coding 561_WT_peak_5569 chr4 103789431 103789671 + 54 NA promoter-TSS (NM_001008388) promoter-TSS (NM_001008388) 499 NM_181893 7323 Hs.518773 NM_003340 HPRD:04269 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin-conjugating enzyme E2D 3 protein-coding 561_WT_peak_5123 chr3 52719330 52719520 + 54 NA promoter-TSS (NM_014366) promoter-TSS (NM_014366) 441 NM_018313 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 561_WT_peak_6674 chr7 55601138 55601417 + 54 NA intron (NM_030796, intron 1 of 4) intron (NM_030796, intron 1 of 4) 4132 NM_001284284 81552 Hs.488307 NM_030796 HPRD:08526 VOPP1 ECOP|GASP vesicular, overexpressed in cancer, prosurvival protein 1 protein-coding 561_WT_peak_5514 chr4 81046809 81047071 + 54 NA Intergenic Intergenic -52314 NM_001286780 118429 Hs.162963 NM_058172 HPRD:07452 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF anthrax toxin receptor 2 protein-coding 561_WT_peak_825 chr1 244624486 244624733 + 54 NA promoter-TSS (NM_173807) promoter-TSS (NM_173807) -64 NM_173807 257044 Hs.459534 NM_173807 HPRD:14561 C1orf101 - chromosome 1 open reading frame 101 protein-coding 561_WT_peak_6815 chr7 107383714 107383897 + 54 NA promoter-TSS (NR_024199) promoter-TSS (NR_024199) -337 NM_001284291 79872 Hs.592271 NM_024814 HPRD:07590 CBLL1 HAKAI|RNF188 Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase protein-coding 561_WT_peak_5953 chr5 138941475 138941637 + 54 NA intron (NM_003339, intron 1 of 6) CpG 805 NM_181838 7322 Hs.108332 NM_003339 HPRD:04268 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin-conjugating enzyme E2D 2 protein-coding 561_WT_peak_6817 chr7 107531730 107531969 + 54 NA intron (NM_001289752, intron 1 of 12) CpG 297 NM_000108 1738 Hs.131711 NM_000108 HPRD:02006 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 561_WT_peak_6709 chr7 72992678 72992902 + 54 NA exon (NM_012453, exon 1 of 7) exon (NM_012453, exon 1 of 7) 223 NM_012453 26608 Hs.647044 NM_012453 HPRD:09319 TBL2 WBSCR13|WS-betaTRP transducin (beta)-like 2 protein-coding 561_WT_peak_3139 chr17 35306004 35306182 + 53 NA promoter-TSS (NM_012138) promoter-TSS (NM_012138) -82 NM_012138 26574 Hs.195740 NM_012138 HPRD:12236 AATF BFR2|CHE-1|CHE1|DED apoptosis antagonizing transcription factor protein-coding 561_WT_peak_52 chr1 10003221 10003411 + 53 NA promoter-TSS (NM_032368) promoter-TSS (NM_032368) -170 NM_001297779 64802 Hs.633762 NM_022787 HPRD:16369 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 561_WT_peak_511 chr1 150254360 150254786 + 53 NA promoter-TSS (NM_001300838) promoter-TSS (NM_001300838) -370 NM_144697 148523 Hs.54680 NM_144697 HPRD:14081 CIART C1orf51|CHRONO|GM129 circadian associated repressor of transcription protein-coding 561_WT_peak_1812 chr12 96252809 96253161 + 53 NA intron (NM_003095, intron 1 of 3) CpG 276 NM_003095 6636 Hs.105465 NM_003095 SNRPF SMF|Sm-F|snRNP-F small nuclear ribonucleoprotein polypeptide F protein-coding 561_WT_peak_2846 chr16 53552664 53552888 + 53 NA Intergenic Intergenic -15606 NM_022476 64400 Hs.380897 NM_022476 HPRD:07467 AKTIP FT1|FTS AKT interacting protein protein-coding 561_WT_peak_5614 chr4 148864286 148864424 + 53 NA intron (NM_024605, intron 14 of 22) intron (NM_024605, intron 14 of 22) 160609 NR_039962 100616246 NR_039962 MIR4799 - microRNA 4799 ncRNA 561_WT_peak_279 chr1 67637748 67637942 + 53 NA intron (NM_144701, intron 3 of 10) intron (NM_144701, intron 3 of 10) 5676 NM_144701 149233 Hs.677426 NM_144701 HPRD:16249 IL23R - interleukin 23 receptor protein-coding 561_WT_peak_2303 chr14 77423009 77423210 + 53 NA Intergenic Intergenic 71933 NM_024496 64207 Hs.179260 NM_024496 HPRD:10713 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein-like protein-coding 561_WT_peak_1527 chr11 128346761 128346944 + 53 NA intron (NM_001143820, intron 8 of 9) intron (NM_001143820, intron 8 of 9) 45353 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 561_WT_peak_3485 chr18 33647234 33647589 + 53 NA promoter-TSS (NM_018170) promoter-TSS (NM_018170) -38 NM_018170 55197 Hs.464912 NM_018170 HPRD:10134 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 561_WT_peak_2401 chr15 22448278 22448575 + 53 NA Intergenic Intergenic 34964 NR_028067 390539 Hs.666555 NR_028067 ENSG00000259435 OR4N3P OR15-2 olfactory receptor, family 4, subfamily N, member 3 pseudogene pseudo 561_WT_peak_1047 chr10 74927634 74927897 + 53 NA promoter-TSS (NM_007265) promoter-TSS (NM_007265) 88 NM_001135752 11319 Hs.631822 NM_007265 HPRD:11032 ECD GCR2|HSGT1 ecdysoneless homolog (Drosophila) protein-coding 561_WT_peak_3199 chr17 42403673 42404025 + 53 NA Intergenic AluSp|SINE|Alu -1632 NM_001143780 51629 Hs.744880 NM_016016 HPRD:13040 SLC25A39 CGI69 solute carrier family 25, member 39 protein-coding 561_WT_peak_7249 chr9 35646735 35647017 + 53 NA Intergenic CpG 4071 NM_014450 27240 Hs.88012 NM_014450 HPRD:05394 SIT1 SIT|SIT-R signaling threshold regulating transmembrane adaptor 1 protein-coding 561_WT_peak_7351 chr9 95640165 95640452 + 53 NA promoter-TSS (NM_031486) promoter-TSS (NM_031486) 12 NM_001261460 83744 Hs.668378 NM_031486 HPRD:18346 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 561_WT_peak_4791 chr21 38362022 38362207 + 53 NA intron (NM_000411, intron 1 of 11) CpG 431 NM_000411 3141 Hs.371350 NM_000411 HPRD:08360 HLCS HCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein-coding 561_WT_peak_4968 chr22 49779873 49780087 + 53 NA Intergenic Intergenic 271210 NR_110522 348645 Hs.133159 NM_198851 HPRD:14180 C22orf34 - chromosome 22 open reading frame 34 protein-coding 561_WT_peak_7162 chr8 134315665 134315902 + 53 NA Intergenic MLT1A0|LTR|ERVL-MaLR -6236 NM_006096 10397 Hs.372914 NM_006096 HPRD:05586 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 561_WT_peak_6650 chr7 43623070 43623324 + 53 NA intron (NM_004760, intron 1 of 6) CpG 505 NM_004760 9263 Hs.709489 NM_004760 HPRD:05288 STK17A DRAK1 serine/threonine kinase 17a protein-coding 561_WT_peak_2474 chr15 49338666 49339009 + 53 NA promoter-TSS (NM_014701) promoter-TSS (NM_014701) -77 NM_001193489 9728 Hs.9997 NM_014701 HPRD:17181 SECISBP2L SBP2L|SLAN SECIS binding protein 2-like protein-coding 561_WT_peak_6771 chr7 99724390 99724613 + 53 NA 5' UTR (NM_203397, exon 1 of 2) 5' UTR (NM_203397, exon 1 of 2) 181 NM_203397 255374 Hs.632319 NM_203397 HPRD:18584 MBLAC1 - metallo-beta-lactamase domain containing 1 protein-coding 561_WT_peak_4716 chr20 61371584 61371929 + 53 NA intron (NM_002531, intron 1 of 3) intron (NM_002531, intron 1 of 3) 31567 NM_002531 4923 Hs.590869 NM_002531 HPRD:01218 NTSR1 NTR neurotensin receptor 1 (high affinity) protein-coding 561_WT_peak_6954 chr8 28258727 28259012 + 53 NA Intergenic Intergenic -14892 NM_018660 55893 Hs.435535 NM_018660 HPRD:11711 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 561_WT_peak_144 chr1 28832525 28832695 + 53 NA intron (NM_001048199, intron 1 of 11) intron (NM_001048199, intron 1 of 11) 155 NR_036473 8420 Hs.469723 NR_002909 ENSG00000242125 SNHG3 NCRNA00014|RNU17C|RNU17D|U17HG|U17HG-A|U17HG-AB small nucleolar RNA host gene 3 (non-protein coding) ncRNA 561_WT_peak_5215 chr3 115511177 115511338 + 53 NA Intergenic Intergenic 169106 NM_001130064 2596 Hs.134974 NM_002045 HPRD:01198 GAP43 B-50|PP46 growth associated protein 43 protein-coding 561_WT_peak_2363 chr14 100680655 100680862 + 53 NA Intergenic CpG -24344 NM_003403 7528 Hs.388927 NM_003403 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 561_WT_peak_357 chr1 109633083 109633346 + 53 NA promoter-TSS (NM_020141) promoter-TSS (NM_020141) -189 NM_020141 56900 Hs.82933 NM_020141 TMEM167B C1orf119 transmembrane protein 167B protein-coding 561_WT_peak_6763 chr7 99069798 99070162 + 53 NA promoter-TSS (NM_213603) promoter-TSS (NM_213603) -535 NM_001013258 285989 Hs.440384 NM_213603 HPRD:14161 ZNF789 - zinc finger protein 789 protein-coding 561_WT_peak_3633 chr19 12750893 12751082 + 53 NA Intergenic CpG 26604 NM_001173498 4125 Hs.356769 NM_000528 HPRD:02007 MAN2B1 LAMAN|MANB mannosidase, alpha, class 2B, member 1 protein-coding 561_WT_peak_4334 chr2 157198441 157198825 + 53 NA Intergenic CpG -9346 NM_006186 4929 Hs.563344 NM_006186 HPRD:03493 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4, group A, member 2 protein-coding 561_WT_peak_4047 chr2 43447029 43447483 + 53 NA Intergenic Intergenic 6489 NM_006887 678 Hs.503093 NM_006887 HPRD:18319 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 561_WT_peak_3813 chr19 46390075 46390244 + 53 NA promoter-TSS (NM_015649) promoter-TSS (NM_015649) -783 NM_015649 26145 Hs.515477 NM_015649 HPRD:17159 IRF2BP1 - interferon regulatory factor 2 binding protein 1 protein-coding 561_WT_peak_2664 chr16 2918158 2918369 + 53 NA Intergenic CpG -10092 NM_022119 64063 Hs.459709 NM_022119 HPRD:08336 PRSS22 BSSP-4|hBSSP-4 protease, serine, 22 protein-coding 561_WT_peak_953 chr10 35484876 35485106 + 53 NA exon (NM_182724, exon 1 of 3) exon (NM_182724, exon 1 of 3) 161 NR_051972 1390 Hs.200250 NM_001881 HPRD:00444 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 561_WT_peak_7380 chr9 107510285 107510578 + 53 NA intron (NM_015469, intron 1 of 5) CpG 462 NM_015469 25934 Hs.530275 NM_015469 HPRD:16399 NIPSNAP3A NIPSNAP4|TASSC nipsnap homolog 3A (C. elegans) protein-coding 561_WT_peak_6362 chr6 64283023 64283457 + 53 NA intron (NM_003463, intron 1 of 5) CpG 1323 NM_003463 7803 Hs.227777 NM_003463 HPRD:03349 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase type IVA, member 1 protein-coding 561_WT_peak_2085 chr13 99739653 99739843 + 53 NA non-coding (NR_047482, exon 1 of 1) non-coding (NR_047482, exon 1 of 1) 771 NR_047482 100861541 Hs.344872 NR_047482 DOCK9-AS2 - DOCK9 antisense RNA 2 (head to head) ncRNA 561_WT_peak_4275 chr2 118572127 118572503 + 53 NA promoter-TSS (NM_006773) promoter-TSS (NM_006773) 60 NM_006773 8886 Hs.744922 NM_006773 HPRD:05894 DDX18 MrDb DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 protein-coding 561_WT_peak_4288 chr2 128284262 128284537 + 53 NA promoter-TSS (NM_017969) promoter-TSS (NM_017969) -312 NM_017969 55677 Hs.469879 NM_017969 HPRD:07639 IWS1 - IWS1 homolog (S. cerevisiae) protein-coding 561_WT_peak_4807 chr21 43429961 43430413 + 53 NA intron (NR_119384, intron 1 of 1) CpG 309 NM_001098402 49854 Hs.434947 NM_020727 HPRD:10328 ZBTB21 ZNF295 zinc finger and BTB domain containing 21 protein-coding 561_WT_peak_4841 chr22 20861776 20861946 + 53 NA promoter-TSS (NM_001003891) promoter-TSS (NM_001003891) 32 NM_001293236 51586 Hs.517421 NM_015889 HPRD:12117 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 561_WT_peak_3902 chr19 56165016 56165187 + 53 NA promoter-TSS (NM_007279) promoter-TSS (NM_007279) -315 NM_007279 11338 Hs.528007 NM_007279 HPRD:01872 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 561_WT_peak_820 chr1 243419165 243419486 + 53 NA promoter-TSS (NM_014812) promoter-TSS (NM_014812) 18 NM_006642 10806 Hs.591530 NM_006642 HPRD:10215 SDCCAG8 BBS16|CCCAP|CCCAP SLSN7|NPHP10|NY-CO-8|SLSN7|hCCCAP serologically defined colon cancer antigen 8 protein-coding 561_WT_peak_5031 chr3 18720859 18721047 + 53 NA Intergenic Intergenic 234224 NR_125803 101927777 Hs.543235 NR_125803 SATB1-AS1 - SATB1 antisense RNA 1 ncRNA 561_WT_peak_1448 chr11 88148139 88148411 + 53 NA Intergenic Intergenic -77334 NM_001814 1075 Hs.128065 NM_001814 HPRD:03841 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 561_WT_peak_5821 chr5 76028944 76029114 + 53 NA exon (NM_001992, exon 2 of 2) exon (NM_001992, exon 2 of 2) 17161 NM_001992 2149 Hs.482562 NM_001992 HPRD:01763 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II (thrombin) receptor protein-coding 561_WT_peak_497 chr1 149824160 149824643 + 53 NA exon (NM_021059, exon 1 of 1).2 exon (NM_021059, exon 1 of 1).2 220 NM_001005464 333932 Hs.647745 NM_001005464 HIST2H3A H3/n|H3/o histone cluster 2, H3a protein-coding 561_WT_peak_5533 chr4 84376679 84377008 + 53 NA promoter-TSS (NM_016067) promoter-TSS (NM_016067) 193 NM_001297756 113510 Hs.480101 NM_133636 HPRD:08422 HELQ HEL308 helicase, POLQ-like protein-coding 561_WT_peak_1916 chr12 125259035 125259510 + 53 NA Intergenic L1ME1|LINE|L1 89247 NM_005505 949 Hs.731377 NM_005505 HPRD:03024 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B, member 1 protein-coding 561_WT_peak_3047 chr17 15466433 15466793 + 53 NA intron (NR_037924, intron 1 of 5) CpG 332 NR_037924 100533496 Hs.164595 NM_001204478 ENSG00000259024 TVP23C-CDRT4 FAM18B2-CDRT4 TVP23C-CDRT4 readthrough protein-coding 561_WT_peak_5949 chr5 138775029 138775361 + 53 NA promoter-TSS (NM_152686) promoter-TSS (NM_152686) 19 NM_152686 202052 Hs.483537 NM_152686 HPRD:07130 DNAJC18 - DnaJ (Hsp40) homolog, subfamily C, member 18 protein-coding 561_WT_peak_4713 chr20 60876941 60877179 + 53 NA promoter-TSS (NM_001281438) promoter-TSS (NM_001281438) -892 NM_175573 11047 Hs.90107 NM_007002 HPRD:06440 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 561_WT_peak_6538 chr6 159239870 159240056 + 53 NA promoter-TSS (NM_003379) promoter-TSS (NM_003379) 493 NM_001111077 7430 Hs.487027 NM_003379 HPRD:00475 EZR CVIL|CVL|HEL-S-105|VIL2 ezrin protein-coding 561_WT_peak_7332 chr9 91933400 91934029 + 53 NA promoter-TSS (NM_001282690) promoter-TSS (NM_001282690) -52 NM_001282690 79048 Hs.59804 NM_024077 HPRD:07408 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 561_WT_peak_42 chr1 8242483 8242755 + 53 NA Intergenic Intergenic -135526 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5 solute carrier family 45, member 1 protein-coding 561_WT_peak_2350 chr14 96968498 96968689 + 53 NA promoter-TSS (NM_032632) promoter-TSS (NM_032632) 70 NR_122121 730202 Hs.647565 NR_122121 LOC730202 - uncharacterized LOC730202 ncRNA 561_WT_peak_6810 chr7 106301344 106301547 + 53 NA 5' UTR (NM_175884, exon 1 of 1) 5' UTR (NM_175884, exon 1 of 1) 189 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 561_WT_peak_5518 chr4 83295352 83295827 + 53 NA promoter-TSS (NM_031370) promoter-TSS (NM_031370) -440 NM_002138 3184 Hs.480073 NM_002138 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) protein-coding 561_WT_peak_7147 chr8 126954337 126954587 + 53 NA non-coding (NR_038446, exon 2 of 2) non-coding (NR_038446, exon 2 of 2) 8979 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 561_WT_peak_1035 chr10 71078196 71078381 + 53 NA promoter-TSS (NM_000188) promoter-TSS (NM_000188) -315 NM_000188 3098 Hs.370365 NM_000188 HPRD:00809 HK1 HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1 hexokinase 1 protein-coding 561_WT_peak_4382 chr2 179896631 179896815 + 53 NA intron (NM_173648, intron 2 of 23) intron (NM_173648, intron 2 of 23) 18063 NM_173648 285025 Hs.324341 NM_173648 HPRD:08257 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 561_WT_peak_6269 chr6 30737139 30737309 + 53 NA Intergenic Intergenic -24897 NM_003897 8870 Hs.76095 NM_003897 HPRD:04295 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 561_WT_peak_4238 chr2 102323304 102323515 + 53 NA intron (NM_145686, intron 2 of 30) HAL1|LINE|L1 8871 NM_145687 9448 Hs.701013 NM_004834 HPRD:05235 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 561_WT_peak_3576 chr19 3178749 3178951 + 53 NA exon (NM_003775, exon 1 of 1) exon (NM_003775, exon 1 of 1) 114 NM_003775 8698 Hs.662006 NM_003775 HPRD:04779 S1PR4 EDG6|LPC1|S1P4|SLP4 sphingosine-1-phosphate receptor 4 protein-coding 561_WT_peak_1875 chr12 120449728 120449953 + 53 NA intron (NM_207311, intron 2 of 8) intron (NM_207311, intron 2 of 8) 22192 NM_207311 92558 Hs.369763 NM_207311 HPRD:14292 CCDC64 BICDR-1|H_267D11.1 coiled-coil domain containing 64 protein-coding 561_WT_peak_512 chr1 150266007 150266168 + 53 NA promoter-TSS (NM_031901) promoter-TSS (NM_031901) -175 NM_031901 54460 Hs.405880 NM_018997 HPRD:14784 MRPS21 MRP-S21|RPMS21 mitochondrial ribosomal protein S21 protein-coding 561_WT_peak_1165 chr10 126406754 126406973 + 53 NA intron (NM_014661, intron 1 of 4) intron (NM_014661, intron 1 of 4) 14266 NR_120630 101927944 Hs.437448 NR_120630 FAM53B-AS1 - FAM53B antisense RNA 1 ncRNA 561_WT_peak_2289 chr14 75229653 75229977 + 53 NA promoter-TSS (NM_019589) promoter-TSS (NM_019589) -254 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 561_WT_peak_3333 chr17 73008600 73008966 + 53 NA promoter-TSS (NM_001545) promoter-TSS (NM_001545) 3 NM_001545 3396 Hs.407955 NM_001545 HPRD:04299 ICT1 DS-1|DS1|MRP-L58 immature colon carcinoma transcript 1 protein-coding 561_WT_peak_7258 chr9 37592317 37592753 + 53 NA 5' UTR (NM_001134485, exon 1 of 2) 5' UTR (NM_001134485, exon 1 of 2) 101 NM_001001790 401505 Hs.130774 NM_001001790 HPRD:16672 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 homolog (yeast) protein-coding 561_WT_peak_2345 chr14 94429705 94429885 + 53 NA intron (NM_001202429, intron 2 of 9) intron (NM_001202429, intron 2 of 9) -6028 NM_016150 51676 Hs.510327 NM_016150 HPRD:05768 ASB2 ASB-2 ankyrin repeat and SOCS box containing 2 protein-coding 561_WT_peak_1439 chr11 85358987 85359262 + 53 NA 5' UTR (NM_032273, exon 1 of 5) 5' UTR (NM_032273, exon 1 of 5) 161 NM_001244735 84233 Hs.533725 NM_032273 HPRD:13216 TMEM126A OPA7 transmembrane protein 126A protein-coding 561_WT_peak_345 chr1 101702098 101702383 + 53 NA promoter-TSS (NM_001400) promoter-TSS (NM_001400) -65 NM_001400 1901 Hs.154210 NM_001400 HPRD:03578 S1PR1 CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 sphingosine-1-phosphate receptor 1 protein-coding 561_WT_peak_3424 chr18 9083871 9084211 + 53 NA Intergenic Intergenic -18587 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 561_WT_peak_7116 chr8 117886474 117886647 + 53 NA promoter-TSS (NR_033886) promoter-TSS (NR_033886) -103 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 561_WT_peak_2782 chr16 30546317 30546542 + 53 NA promoter-TSS (NM_023931) promoter-TSS (NM_023931) -235 NM_023931 65988 Hs.592032 NM_023931 ZNF747 - zinc finger protein 747 protein-coding 561_WT_peak_1693 chr12 50898892 50899066 + 53 NA exon (NM_173602, exon 1 of 38) exon (NM_173602, exon 1 of 38) 211 NM_173602 57609 Hs.505516 NM_020849 HPRD:08751 DIP2B - DIP2 disco-interacting protein 2 homolog B (Drosophila) protein-coding 561_WT_peak_2983 chr17 2718055 2718297 + 53 NA intron (NM_015085, intron 2 of 24) intron (NM_015085, intron 2 of 24) 18444 NM_001100398 23108 Hs.499659 NM_015085 HPRD:17028 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 561_WT_peak_4389 chr2 187454531 187454816 + 53 NA promoter-TSS (NM_002210) promoter-TSS (NM_002210) -117 NM_002210 3685 Hs.436873 NM_002210 HPRD:01903 ITGAV CD51|MSK8|VNRA|VTNR integrin, alpha V protein-coding 561_WT_peak_6493 chr6 139612986 139613272 + 53 NA promoter-TSS (NM_153235) promoter-TSS (NM_153235) 79 NM_153235 167838 Hs.535820 NM_153235 HPRD:10793 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 561_WT_peak_7221 chr9 19161601 19161729 + 53 NA Intergenic Intergenic -34061 NM_001122 123 Hs.3416 NM_001122 HPRD:00057 PLIN2 ADFP|ADRP perilipin 2 protein-coding 561_WT_peak_4402 chr2 191980186 191980322 + 53 NA intron (NM_003151, intron 3 of 23) intron (NM_003151, intron 3 of 23) 35732 NM_003151 6775 Hs.80642 NM_003151 HPRD:02779 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 561_WT_peak_1384 chr11 66610939 66611109 + 53 NA TTS (NR_048553) TTS (NR_048553) 141 NM_005133 9986 Hs.654972 NM_005133 HPRD:07289 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 561_WT_peak_4451 chr2 204871038 204871428 + 53 NA Intergenic MIRb|SINE|MIR 69762 NM_012092 29851 Hs.56247 NM_012092 HPRD:09196 ICOS AILIM|CD278|CVID1 inducible T-cell co-stimulator protein-coding 561_WT_peak_5004 chr3 12235039 12235219 + 53 NA Intergenic Intergenic -34278 NM_003256 7079 Hs.591665 NM_003256 HPRD:03557 TIMP4 - TIMP metallopeptidase inhibitor 4 protein-coding 561_WT_peak_4577 chr20 18774720 18774931 + 53 NA promoter-TSS (NR_026884) promoter-TSS (NR_026884) 132 NR_026885 100270804 Hs.598768 NR_026885 LOC100270804 - uncharacterized LOC100270804 ncRNA 561_WT_peak_6517 chr6 151711700 151711886 + 53 NA intron (NM_020861, intron 1 of 2) CpG 884 NM_020861 57621 Hs.520073 NM_020861 HPRD:10314 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 561_WT_peak_5874 chr5 110427996 110428196 + 53 NA exon (NM_139281, exon 1 of 23) exon (NM_139281, exon 1 of 23) 226 NM_139281 134430 Hs.533237 NM_139281 HPRD:10305 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 561_WT_peak_2058 chr13 52026559 52026750 + 53 NA promoter-TSS (NR_103812) promoter-TSS (NR_103812) 621 NM_012141 26512 Hs.439440 NM_012141 HPRD:05063 INTS6 DBI-1|DDX26|DDX26A|DICE1|HDB|INT6|Notchl2 integrator complex subunit 6 protein-coding 561_WT_peak_6106 chr6 13615004 13615256 + 53 NA promoter-TSS (NM_016167) promoter-TSS (NM_016167) -429 NM_016167 51406 Hs.306242 NM_016167 NOL7 C6orf90|PQBP3|RARG-1|dJ223E5.2 nucleolar protein 7, 27kDa protein-coding 561_WT_peak_3463 chr18 21033219 21033455 + 53 NA 5' UTR (NM_003831, exon 1 of 13) 5' UTR (NM_003831, exon 1 of 13) 550 NM_003831 8780 Hs.445511 NM_003831 HPRD:04659 RIOK3 SUDD RIO kinase 3 protein-coding 561_WT_peak_2075 chr13 77901128 77901343 + 53 NA promoter-TSS (NM_015057) promoter-TSS (NM_015057) -58 NM_015057 23077 Hs.591221 NM_015057 HPRD:10104 MYCBP2 PAM MYC binding protein 2, E3 ubiquitin protein ligase protein-coding 561_WT_peak_827 chr1 244816477 244816672 + 53 NA non-coding (NR_123736, exon 1 of 4) non-coding (NR_123736, exon 1 of 4) 224 NR_123736 51029 Hs.498317 NM_016076 HPRD:15153 DESI2 C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 561_WT_peak_4981 chr3 3168668 3168983 + 53 NA intron (NM_182916, intron 1 of 7) CpG 225 NM_182916 51095 Hs.732725 NM_016000 HPRD:18227 TRNT1 CCA1|MtCCA tRNA nucleotidyl transferase, CCA-adding, 1 protein-coding 561_WT_peak_1296 chr11 59324862 59325106 + 53 NA Intergenic tRNA-Phe-TTY|tRNA|tRNA 37647 NR_036120 100422880 NR_036120 MIR3162 - microRNA 3162 ncRNA 561_WT_peak_2848 chr16 56485065 56485225 + 52 NA promoter-TSS (NM_018233) promoter-TSS (NM_018233) 116 NM_007006 11051 Hs.528834 NM_007006 HPRD:05400 NUDT21 CFIM25|CPSF5 nudix (nucleoside diphosphate linked moiety X)-type motif 21 protein-coding 561_WT_peak_245 chr1 53662591 53662828 + 52 NA exon (NM_000098, exon 1 of 5) exon (NM_000098, exon 1 of 5) 608 NM_000098 1376 Hs.713535 NM_000098 HPRD:02802 CPT2 CPT1|CPTASE|IIAE4 carnitine palmitoyltransferase 2 protein-coding 561_WT_peak_2138 chr14 23771202 23771427 + 52 NA intron (NM_001276318, intron 1 of 4) CpG 743 NM_001276318 90673 Hs.601513 NM_001276318 ENSG00000235194 PPP1R3E - protein phosphatase 1, regulatory subunit 3E protein-coding 561_WT_peak_2698 chr16 11348651 11348989 + 52 NA exon (NM_003745, exon 2 of 2) exon (NM_003745, exon 2 of 2) 1219 NM_003745 8651 Hs.50640 NM_003745 HPRD:04669 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 561_WT_peak_3731 chr19 36239174 36239389 + 52 NA promoter-TSS (NM_019104) promoter-TSS (NM_019104) 19 NM_019104 55957 Hs.529100 NM_019104 HPRD:16872 LIN37 F25965|ZK418.4|lin-37 lin-37 DREAM MuvB core complex component protein-coding 561_WT_peak_4026 chr2 37384265 37384439 + 52 NA promoter-TSS (NM_002759) promoter-TSS (NM_002759) -162 NM_001135651 5610 Hs.131431 NM_002759 HPRD:01468 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2-alpha kinase 2 protein-coding 561_WT_peak_4913 chr22 39077779 39078203 + 52 NA promoter-TSS (NM_020243) promoter-TSS (NM_020243) 37 NM_020243 56993 Hs.595072 NM_020243 HPRD:06130 TOMM22 1C9-2|MST065|MSTP065|TOM22 translocase of outer mitochondrial membrane 22 homolog (yeast) protein-coding 561_WT_peak_5373 chr3 196669604 196669789 + 52 NA promoter-TSS (NM_007362) promoter-TSS (NM_007362) 202 NR_024388 152217 Hs.118820 NR_024388 NCBP2-AS2 - NCBP2 antisense RNA 2 (head to head) ncRNA 561_WT_peak_1255 chr11 36375992 36376174 + 52 NA intron (NM_001160167, intron 1 of 8) intron (NM_001160167, intron 1 of 8) -21452 NM_024841 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 561_WT_peak_6506 chr6 146056038 146056331 + 52 NA intron (NR_038246, intron 1 of 2) CpG 179 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 561_WT_peak_1336 chr11 64739294 64739669 + 52 NA promoter-TSS (NM_001037225) promoter-TSS (NM_001037225) 82 NM_001300803 283129 Hs.567793 NM_001037225 HPRD:18761 C11orf85 - chromosome 11 open reading frame 85 protein-coding 561_WT_peak_1533 chr11 134094094 134094420 + 52 NA promoter-TSS (NM_052875) promoter-TSS (NM_052875) 169 NM_015261 23310 Hs.438550 NM_015261 HPRD:11062 NCAPD3 CAP-D3|CAPD3|hCAP-D3|hHCP-6|hcp-6 non-SMC condensin II complex, subunit D3 protein-coding 561_WT_peak_3600 chr19 6801616 6801800 + 52 NA intron (NM_001258207, intron 1 of 25) intron (NM_001258207, intron 1 of 25) 29029 NM_005428 7409 Hs.116237 NM_005428 HPRD:01284 VAV1 VAV vav 1 guanine nucleotide exchange factor protein-coding 561_WT_peak_3652 chr19 14317671 14317907 + 52 NA promoter-TSS (NM_014921) promoter-TSS (NM_014921) -792 NM_014921 22859 Hs.94229 NM_014921 LPHN1 CIRL1|CL1|LEC2 latrophilin 1 protein-coding 561_WT_peak_4547 chr20 3364920 3365114 + 52 NA intron (NM_001009984, intron 1 of 36) U3|snRNA|snRNA 23292 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 561_WT_peak_4808 chr21 43608585 43608755 + 52 NA Intergenic Intergenic -11129 NM_207627 9619 Hs.124649 NM_004915 HPRD:04355 ABCG1 ABC8|WHITE1 ATP-binding cassette, sub-family G (WHITE), member 1 protein-coding 561_WT_peak_6180 chr6 26550487 26550692 + 52 NA Intergenic MER41C|LTR|ERV1 12017 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 561_WT_peak_3336 chr17 73127582 73127795 + 52 NA exon (NM_001252377, exon 1 of 4) exon (NM_001252377, exon 1 of 4) 202 NM_001252377 30833 Hs.67201 NM_014595 HPRD:11833 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 561_WT_peak_2390 chr14 105953671 105953991 + 52 NA intron (NM_001311, intron 2 of 5) CpG-7559 574 NM_001311 1396 Hs.70327 NM_001311 HPRD:00469 CRIP1 CRHP|CRIP|CRP-1|CRP1 cysteine-rich protein 1 (intestinal) protein-coding 561_WT_peak_1884 chr12 120933573 120933824 + 52 NA promoter-TSS (NM_003746) promoter-TSS (NM_003746) 51 NR_038854 100506668 Hs.660080 NR_038854 ENSG00000248008 DYNLL1-AS1 - DYNLL1 antisense RNA 1 ncRNA 561_WT_peak_6641-2 chr7 36911458 36911592 + 52 NA intron (NR_038120, intron 3 of 5) intron (NR_038120, intron 3 of 5) 47512 NR_031604 100302113 NR_031604 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 561_WT_peak_1506 chr11 118972717 118972719 + 52 NA promoter-TSS (NM_001382) promoter-TSS (NM_001382) 67 NM_001382 1798 Hs.524081 NM_001382 HPRD:01879 DPAGT1 ALG7|CDG-Ij|CDG1J|CMSTA2|D11S366|DGPT|DPAGT|DPAGT2|G1PT|GPT|UAGT|UGAT dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) protein-coding 561_WT_peak_3969 chr2 12647543 12647751 + 52 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -209351 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 561_WT_peak_3778 chr19 42391860 42392068 + 52 NA intron (NM_199002, intron 1 of 28) intron (NM_199002, intron 1 of 28) 3518 NM_199002 9138 Hs.631550 NM_004706 HPRD:03511 ARHGEF1 GEF1|LBCL2|LSC|P115-RHOGEF|SUB1.5 Rho guanine nucleotide exchange factor (GEF) 1 protein-coding 561_WT_peak_466 chr1 147860686 147860978 + 52 NA promoter-TSS (NR_121646).2 promoter-TSS (NR_121646).2 -29 NR_121646 26860 NR_121646 RNU1-13P RNU1-71|RNU1P6|RNVU1-2|U1.1|U1P1|vU1.2 RNA, U1 small nuclear 13, pseudogene snRNA 561_WT_peak_7537 chrX 47695961 47696170 + 52 NA promoter-TSS (NM_007137) promoter-TSS (NM_007137) -236 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 561_WT_peak_5696 chr5 39074698 39075104 + 52 NA promoter-TSS (NM_152756) promoter-TSS (NM_152756) -391 NM_001285439 253260 Hs.407926 NM_152756 HPRD:10682 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR, complex 2 protein-coding 561_WT_peak_1760 chr12 69724746 69724856 + 52 NA Intergenic Intergenic -17333 NM_000239 4069 Hs.524579 NM_000239 HPRD:01085 LYZ LZM lysozyme protein-coding 561_WT_peak_3105 chr17 28690946 28691123 + 52 NA Intergenic Intergenic -14908 NM_001304 1362 Hs.446079 NM_001304 HPRD:04375 CPD GP180 carboxypeptidase D protein-coding 561_WT_peak_4823 chr22 17652388 17652645 + 52 NA Intergenic CpG -6339 NM_017829 27440 Hs.26890 NM_017829 HPRD:16703 CECR5 - cat eye syndrome chromosome region, candidate 5 protein-coding 561_WT_peak_49 chr1 9599708 9599891 + 52 NA exon (NM_032315, exon 1 of 7) exon (NM_032315, exon 1 of 7) 271 NM_032315 84275 Hs.568613 NM_032315 SLC25A33 BMSC-MCP|PNC1 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 protein-coding 561_WT_peak_5231 chr3 122399946 122400127 + 52 NA intron (NM_017554, intron 1 of 16) CpG 364 NM_017554 54625 Hs.518203 NM_017554 HPRD:11421 PARP14 ARTD8|BAL2|PARP-14|pART8 poly (ADP-ribose) polymerase family, member 14 protein-coding 561_WT_peak_6696 chr7 66461876 66462068 + 52 NA intron (NM_018264, intron 1 of 15) CpG 180 NM_018264 55253 Hs.520917 NM_018264 HPRD:07711 TYW1 RSAFD1|TYW1A|YPL207W tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) protein-coding 561_WT_peak_5860 chr5 98264389 98264736 + 52 NA promoter-TSS (NR_036530) promoter-TSS (NR_036530) -276 NR_036530 100289230 Hs.552095 NR_036530 LOC100289230 - uncharacterized LOC100289230 ncRNA 561_WT_peak_1418 chr11 76299371 76299543 + 52 NA Intergenic Intergenic 81587 NM_005512 2615 Hs.151641 NM_005512 HPRD:00667 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 561_WT_peak_6121 chr6 20402789 20403148 + 52 NA promoter-TSS (NM_001243076) promoter-TSS (NM_001243076) 831 NM_001949 1871 Hs.269408 NM_001949 HPRD:02693 E2F3 E2F-3 E2F transcription factor 3 protein-coding 561_WT_peak_4635 chr20 39632081 39632236 + 52 NA Intergenic MIR3|SINE|MIR -25304 NM_003286 7150 Hs.472737 NM_003286 HPRD:00535 TOP1 TOPI topoisomerase (DNA) I protein-coding 561_WT_peak_3839 chr19 49250408 49250582 + 52 NA promoter-TSS (NM_182575) promoter-TSS (NM_182575) -329 NM_182575 284359 Hs.400688 NM_182575 HPRD:14589 IZUMO1 IZUMO izumo sperm-egg fusion 1 protein-coding 561_WT_peak_624 chr1 173445717 173445854 + 52 NA promoter-TSS (NM_004905) promoter-TSS (NM_004905) 509 NR_037845 100506023 Hs.731284 NR_037845 LOC100506023 - uncharacterized LOC100506023 ncRNA 561_WT_peak_6255 chr6 29910840 29911015 + 52 NA intron (NM_002116, intron 2 of 7) CpG-21899 680 NM_002116 3105 Hs.181244 NM_002116 HPRD:00826 HLA-A HLAA major histocompatibility complex, class I, A protein-coding 561_WT_peak_461 chr1 147533017 147533233 + 52 NA Intergenic AluJb|SINE|Alu -45937 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 561_WT_peak_2359 chr14 100069918 100070207 + 52 NA exon (NM_001144995, exon 1 of 6) exon (NM_001144995, exon 1 of 6) 665 NM_001144995 317762 Hs.709288 NM_001144995 ENSG00000205476 CCDC85C - coiled-coil domain containing 85C protein-coding 561_WT_peak_1635 chr12 27933288 27933566 + 52 NA exon (NM_020782, exon 1 of 3) exon (NM_020782, exon 1 of 3) 240 NM_020782 57542 Hs.505104 NM_020782 HPRD:17237 KLHL42 Ctb9|KLHDC5 kelch-like family member 42 protein-coding 561_WT_peak_5029 chr3 17783754 17784024 + 52 NA Intergenic CpG -1490 NM_014744 9779 Hs.475629 NM_014744 HPRD:10262 TBC1D5 - TBC1 domain family, member 5 protein-coding 561_WT_peak_266 chr1 64059154 64059394 + 52 NA promoter-TSS (NM_001172819) promoter-TSS (NM_001172819) -206 NM_001172819 5236 Hs.1869 NM_002633 HPRD:01389 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 561_WT_peak_6340 chr6 44672183 44672427 + 52 NA Intergenic Intergenic 268927 NR_039785 100616352 NR_039785 MIR4642 - microRNA 4642 ncRNA 561_WT_peak_7296 chr9 73034500 73034821 + 52 NA Intergenic CpG -5087 NM_001206 687 Hs.150557 NM_001206 HPRD:04211 KLF9 BTEB|BTEB1 Kruppel-like factor 9 protein-coding 561_WT_peak_7395 chr9 115095384 115095574 + 52 NA promoter-TSS (NM_001244898) promoter-TSS (NM_001244898) -173 NM_001244898 9991 Hs.269988 NM_005156 HPRD:09603 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 561_WT_peak_2530 chr15 67831918 67832121 + 52 NA Intergenic L1MB2|LINE|L1 -3002 NM_002757 5607 Hs.114198 NM_002757 HPRD:03951 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 561_WT_peak_1999 chr13 39612660 39612905 + 52 NA promoter-TSS (NM_025138) promoter-TSS (NM_025138) 334 NM_001017370 387921 Hs.507783 NM_001012754 HPRD:18377 NHLRC3 - NHL repeat containing 3 protein-coding 561_WT_peak_4671 chr20 48212010 48212395 + 52 NA Intergenic MLT1D|LTR|ERVL-MaLR -27495 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 561_WT_peak_6641 chr7 36911372 36911375 + 52 NA intron (NR_038120, intron 3 of 5) intron (NR_038120, intron 3 of 5) 47664 NR_031604 100302113 NR_031604 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 561_WT_peak_7459 chr9 132650016 132650157 + 52 NA 3' UTR (NM_015033, exon 17 of 17) 3' UTR (NM_015033, exon 17 of 17) 18202 NR_106914 102466750 NR_106914 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 561_WT_peak_3137 chr17 34901287 34901530 + 52 NA intron (NM_024835, intron 1 of 13) CpG 671 NM_024835 79893 Hs.514116 NM_024835 HPRD:18337 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 561_WT_peak_264 chr1 63249702 63249872 + 52 NA promoter-TSS (NM_032852) promoter-TSS (NM_032852) 10 NM_032852 84938 Hs.7353 NM_032852 HPRD:07473 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C, cysteine peptidase protein-coding 561_WT_peak_2678 chr16 3767627 3767816 + 52 NA promoter-TSS (NM_001272049) promoter-TSS (NM_001272049) -123 NM_001272049 10131 Hs.30345 NM_016292 HPRD:05868 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor-associated protein 1 protein-coding 561_WT_peak_2294 chr14 75623752 75623919 + 52 NA intron (NM_006827, intron 1 of 4) intron (NM_006827, intron 1 of 4) 19514 NM_006827 10972 Hs.74137 NM_006827 HPRD:12013 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23 transmembrane emp24-like trafficking protein 10 (yeast) protein-coding 561_WT_peak_4522 chr2 241075793 241076030 + 52 NA promoter-TSS (NM_001163424) promoter-TSS (NM_001163424) -147 NM_138336 150678 Hs.293884 NM_138336 HPRD:17306 MYEOV2 - myeloma overexpressed 2 protein-coding 561_WT_peak_3807 chr19 46145467 46145665 + 52 NA exon (NM_001193269, exon 2 of 22) exon (NM_001193269, exon 2 of 22) 661 NM_001242348 100287177 Hs.668611 NM_001242348 ENSG00000267757 C19orf83 - chromosome 19 open reading frame 83 protein-coding 561_WT_peak_3308 chr17 63052570 63052863 + 52 NA promoter-TSS (NM_001282425) promoter-TSS (NM_001282425) 204 NM_006572 10672 Hs.515018 NM_006572 HPRD:05100 GNA13 G13 guanine nucleotide binding protein (G protein), alpha 13 protein-coding 561_WT_peak_5156 chr3 72496527 72496812 + 52 NA promoter-TSS (NM_012234) promoter-TSS (NM_012234) -895 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 561_WT_peak_5214 chr3 113942098 113942270 + 52 NA Intergenic Intergenic 14241 NM_007136 7634 Hs.271079 NM_007136 HPRD:01932 ZNF80 pT17 zinc finger protein 80 protein-coding 561_WT_peak_4427 chr2 198570206 198570386 + 52 NA exon (NM_138395, exon 1 of 1) exon (NM_138395, exon 1 of 1) 268 NM_138395 92935 Hs.744330 NM_138395 HPRD:14363 MARS2 MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 561_WT_peak_7652 chrY 16456885 16457102 + 52 NA Intergenic Intergenic -177495 NM_001206850 22829 Hs.439199 NM_014893 HPRD:11849 NLGN4Y - neuroligin 4, Y-linked protein-coding 561_WT_peak_7194 chr8 146126951 146127333 + 52 NA promoter-TSS (NM_001109689) promoter-TSS (NM_001109689) -296 NM_021061 58500 Hs.532277 NM_021061 HPRD:15758 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 561_WT_peak_7522 chrX 39719632 39719869 + 52 NA Intergenic Intergenic 236969 NM_017745 54880 Hs.659681 NM_017745 HPRD:06458 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 561_WT_peak_5790 chr5 68513791 68513962 + 52 NA intron (NM_033281, intron 1 of 3) CpG 303 NM_033281 92259 Hs.631971 NM_033281 HPRD:17600 MRPS36 MRP-S36 mitochondrial ribosomal protein S36 protein-coding 561_WT_peak_6478 chr6 134568442 134568806 + 52 NA intron (NM_001143676, intron 2 of 13) intron (NM_001143676, intron 2 of 13) -69614 NM_001143677 6446 Hs.510078 NM_005627 HPRD:04264 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 561_WT_peak_7399 chr9 117135267 117135521 + 51 NA intron (NM_030767, intron 4 of 21) intron (NM_030767, intron 4 of 21) 21291 NM_030767 80709 Hs.494895 NM_030767 HPRD:16148 AKNA - AT-hook transcription factor protein-coding 561_WT_peak_2962 chr16 90039362 90039532 + 51 NA promoter-TSS (NM_145039) promoter-TSS (NM_145039) -207 NM_145039 92806 Hs.513832 NM_145039 HPRD:08321 CENPBD1 - CENPB DNA-binding domains containing 1 protein-coding 561_WT_peak_5419 chr4 13629305 13629751 + 51 NA promoter-TSS (NR_049814) promoter-TSS (NR_049814) 39 NR_049814 100847023 NR_049814 miRBase:MI0017980 MIR5091 - microRNA 5091 ncRNA 561_WT_peak_7140 chr8 125551296 125551625 + 51 NA promoter-TSS (NR_027427) promoter-TSS (NR_027427) 117 NM_001278645 4715 Hs.15977 NM_005005 HPRD:03264 NDUFB9 B22|CI-B22|LYRM3|UQOR22 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa protein-coding 561_WT_peak_4480 chr2 222382688 222382857 + 51 NA intron (NM_004438, intron 3 of 17) intron (NM_004438, intron 3 of 17) 54238 NM_004438 2043 Hs.371218 NM_004438 HPRD:03719 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 561_WT_peak_648 chr1 183440998 183441354 + 51 NA promoter-TSS (NM_201568) promoter-TSS (NM_201568) -59 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 561_WT_peak_2257 chr14 64971120 64971376 + 51 NA promoter-TSS (NM_014950) promoter-TSS (NM_014950) -44 NM_014950 22890 Hs.605143 NM_014950 HPRD:15688 ZBTB1 ZNF909 zinc finger and BTB domain containing 1 protein-coding 561_WT_peak_2099 chr13 111366958 111367283 + 51 NA promoter-TSS (NM_005537) promoter-TSS (NM_005537) -239 NM_005537 3621 Hs.46700 NM_005537 HPRD:03337 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family, member 1 protein-coding 561_WT_peak_5248 chr3 128839299 128839499 + 51 NA intron (NM_001204890, intron 11 of 12) intron (NM_001204890, intron 11 of 12) 1248 NM_198490 339122 Hs.381132 NM_198490 HPRD:17947 RAB43 RAB11B|RAB41 RAB43, member RAS oncogene family protein-coding 561_WT_peak_2713 chr16 18812625 18812833 + 51 NA intron (NM_015161, intron 1 of 5) CpG 128 NM_015161 23204 Hs.634882 NM_015161 HPRD:09641 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP-ribosylation factor-like 6 interacting protein 1 protein-coding 561_WT_peak_853 chr10 4014928 4015103 + 51 NA Intergenic Intergenic -18337 NR_106726 102464829 NR_106726 MIR6078 hsa-mir-6078 microRNA 6078 ncRNA 561_WT_peak_6100 chr6 11258397 11258761 + 51 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) -25664 NM_001271033 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 561_WT_peak_3948 chr2 3523474 3523663 + 51 NA promoter-TSS (NM_018269) promoter-TSS (NM_018269) -218 NM_018269 55256 Hs.502773 NM_018269 HPRD:17607 ADI1 APL1|ARD|Fe-ARD|MTCBP1|Ni-ARD|SIPL|mtnD acireductone dioxygenase 1 protein-coding 561_WT_peak_2681 chr16 4464489 4464676 + 51 NA intron (NM_024535, intron 1 of 27) intron (NM_024535, intron 1 of 27) 2380 NM_024535 79585 Hs.437957 NM_024535 HPRD:07975 CORO7 0610011B16Rik|CRN7|POD1 coronin 7 protein-coding 561_WT_peak_2334 chr14 91712640 91712810 + 51 NA intron (NM_003485, intron 1 of 1) intron (NM_003485, intron 1 of 1) -1873 NM_001177676 8111 Hs.8882 NM_003485 HPRD:03241 GPR68 GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 561_WT_peak_1834 chr12 104697701 104697911 + 51 NA exon (NM_001008394, exon 1 of 1) exon (NM_001008394, exon 1 of 1) 296 NM_001008394 493861 Hs.659857 NM_001008394 HPRD:17415 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 561_WT_peak_4113 chr2 68289904 68290112 + 51 NA intron (NM_001190263, intron 1 of 5) intron (NM_001190263, intron 1 of 5) 151 NM_173177 10438 Hs.602900 NM_006333 C1D LRP1|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 561_WT_peak_6618 chr7 25019077 25019252 + 51 NA intron (NM_015550, intron 1 of 22) CpG 667 NM_015550 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 561_WT_peak_7082 chr8 101443038 101443359 + 51 NA Intergenic Intergenic 48207 NR_039681 100616451 NR_039681 miRBase:MI0016822 MIR4471 - microRNA 4471 ncRNA 561_WT_peak_3329 chr17 67323502 67323758 + 51 NA promoter-TSS (NM_172232) promoter-TSS (NM_172232) -307 NM_172232 23461 Hs.731824 NM_018672 HPRD:09789 ABCA5 ABC13|EST90625 ATP-binding cassette, sub-family A (ABC1), member 5 protein-coding 561_WT_peak_5427 chr4 18023195 18023507 + 51 NA exon (NM_153686, exon 1 of 7) exon (NM_153686, exon 1 of 7) 132 NM_001166139 254251 Hs.446201 NM_153686 HPRD:10088 LCORL MLR1 ligand dependent nuclear receptor corepressor-like protein-coding 561_WT_peak_1145 chr10 112327430 112327707 + 51 NA 5' UTR (NM_005445, exon 1 of 29) 5' UTR (NM_005445, exon 1 of 29) 119 NM_005445 9126 Hs.24485 NM_005445 HPRD:05829 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 561_WT_peak_531 chr1 152020939 152020969 + 51 NA Intergenic Intergenic -11443 NM_005620 6282 Hs.417004 NM_005620 HPRD:04385 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 561_WT_peak_1991 chr13 34253203 34253407 + 51 NA Intergenic Intergenic -2333 NM_001243476 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 561_WT_peak_1148 chr10 114206649 114206868 + 51 NA promoter-TSS (NM_145206) promoter-TSS (NM_145206) 2 NM_145206 143187 Hs.194554 NM_145206 HPRD:18290 VTI1A MMDS3|MVti1|VTI1RP2|Vti1-rp2 vesicle transport through interaction with t-SNAREs 1A protein-coding 561_WT_peak_5010 chr3 13053088 13053258 + 51 NA intron (NM_001134382, intron 1 of 14) intron (NM_001134382, intron 1 of 14) -43975 NM_014869 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 561_WT_peak_1501 chr11 118215154 118215387 + 51 NA intron (NM_000073, intron 1 of 6) intron (NM_000073, intron 1 of 6) 211 NM_000073 917 Hs.2259 NM_000073 CD3G CD3-GAMMA|IMD17|T3G CD3g molecule, gamma (CD3-TCR complex) protein-coding 561_WT_peak_4960 chr22 44351351 44351585 + 51 NA exon (NM_015380, exon 1 of 15) exon (NM_015380, exon 1 of 15) 207 NM_015380 25813 Hs.505824 NM_015380 HPRD:10826 SAMM50 OMP85|SAM50|TOB55|TRG-3|YNL026W SAMM50 sorting and assembly machinery component protein-coding 561_WT_peak_1512 chr11 122932625 122932957 + 51 NA 5' UTR (NM_006597, exon 1 of 9) 5' UTR (NM_006597, exon 1 of 9) 252 NM_006597 3312 Hs.180414 NM_006597 HPRD:07205 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock 70kDa protein 8 protein-coding 561_WT_peak_448 chr1 145589431 145589617 + 51 NA promoter-TSS (NM_001012758) promoter-TSS (NM_001012758) -89 NM_001012758 200035 Hs.585066 NM_001012758 NUDT17 - nudix (nucleoside diphosphate linked moiety X)-type motif 17 protein-coding 561_WT_peak_6259 chr6 30294235 30294417 + 51 NA promoter-TSS (NM_021253) promoter-TSS (NM_021253) -295 NM_021253 56658 Hs.413493 NM_021253 HPRD:09298 TRIM39 RNF23|TFP|TRIM39B tripartite motif containing 39 protein-coding 561_WT_peak_5452 chr4 39978800 39979076 + 51 NA intron (NM_001100400, intron 1 of 15) CpG 638 NM_001100400 23244 Hs.331431 NM_015200 HPRD:11537 PDS5A SCC-112|SCC112 PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) protein-coding 561_WT_peak_4138 chr2 71295453 71295695 + 51 NA 5' UTR (NM_017567, exon 1 of 10) 5' UTR (NM_017567, exon 1 of 10) 166 NM_017567 55577 Hs.7036 NM_017567 HPRD:08441 NAGK GNK|HSA242910 N-acetylglucosamine kinase protein-coding 561_WT_peak_193 chr1 40505315 40505496 + 51 NA promoter-TSS (NM_006367) promoter-TSS (NM_006367) -850 NM_001105530 10487 Hs.370581 NM_006367 HPRD:09869 CAP1 CAP|CAP1-PEN CAP, adenylate cyclase-associated protein 1 (yeast) protein-coding 561_WT_peak_6035 chr5 176874150 176874357 + 51 NA intron (NM_001174101, intron 1 of 2) CpG 457 NM_001174101 80758 Hs.534492 NM_030567 HPRD:15186 PRR7 - proline rich 7 (synaptic) protein-coding 561_WT_peak_1241 chr11 33060639 33060811 + 51 NA promoter-TSS (NM_018393) promoter-TSS (NM_018393) -238 NM_018393 55346 Hs.655341 NM_018393 HPRD:07750 TCP11L1 dJ85M6.3 t-complex 11, testis-specific-like 1 protein-coding 561_WT_peak_2531 chr15 67834600 67834770 + 51 NA promoter-TSS (NM_002757) promoter-TSS (NM_002757) -336 NM_002757 5607 Hs.114198 NM_002757 HPRD:03951 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 561_WT_peak_4967 chr22 48494166 48494355 + 51 NA Intergenic Intergenic -175916 NR_036172 100422916 NR_036172 miRBase:MI0014250 MIR3201 - microRNA 3201 ncRNA 561_WT_peak_7314 chr9 82185342 82185589 + 51 NA Intergenic Intergenic -1223 NM_001282753 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4 transducin-like enhancer of split 4 protein-coding 561_WT_peak_4141 chr2 71559246 71559442 + 51 NA intron (NM_001252613, intron 1 of 27) CpG 459 NM_001014972 27332 Hs.434401 NM_014497 HPRD:11736 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 561_WT_peak_3735 chr19 36485927 36486108 + 51 NA promoter-TSS (NM_001042631) promoter-TSS (NM_001042631) -73 NM_001042631 644096 Hs.356460 NM_001042631 ENSG00000205138 SDHAF1 LYRM8 succinate dehydrogenase complex assembly factor 1 protein-coding 561_WT_peak_6970 chr8 30515066 30515282 + 51 NA intron (NM_002095, intron 1 of 7) CpG 564 NM_002095 2961 Hs.77100 NM_002095 HPRD:01800 GTF2E2 FE|TF2E2|TFIIE-B general transcription factor IIE, polypeptide 2, beta 34kDa protein-coding 561_WT_peak_1855 chr12 111020537 111020820 + 51 NA exon (NM_139283, exon 1 of 6) exon (NM_139283, exon 1 of 6) 386 NM_139283 160760 Hs.13854 NM_139283 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog (S. cerevisiae) protein-coding 561_WT_peak_4065 chr2 48571313 48571503 + 51 NA intron (NM_002158, intron 2 of 6) intron (NM_002158, intron 2 of 6) 29613 NM_002158 3344 Hs.468478 NM_002158 HPRD:00882 FOXN2 HTLF forkhead box N2 protein-coding 561_WT_peak_4314 chr2 136500001 136500110 + 51 NA intron (NM_014607, intron 1 of 12) CpG 866 NM_014607 23190 Hs.591242 NM_014607 HPRD:18254 UBXN4 UBXD2|UBXDC1|erasin UBX domain protein 4 protein-coding 561_WT_peak_1762 chr12 69754221 69754244 + 51 NA intron (NM_001300950, intron 1 of 4) intron (NM_001300950, intron 1 of 4) 742 NM_006530 8089 Hs.4029 NM_006530 HPRD:03666 YEATS4 4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9 YEATS domain containing 4 protein-coding 561_WT_peak_4480-2 chr2 222382906 222383203 + 51 NA intron (NM_004438, intron 3 of 17) intron (NM_004438, intron 3 of 17) 53956 NM_004438 2043 Hs.371218 NM_004438 HPRD:03719 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 561_WT_peak_5003 chr3 11684055 11684230 + 51 NA intron (NM_014667, intron 2 of 5) intron (NM_014667, intron 2 of 5) 1309 NM_001128219 9686 Hs.740389 NM_014667 HPRD:11672 VGLL4 VGL-4 vestigial-like family member 4 protein-coding 561_WT_peak_6471 chr6 131018913 131019204 + 51 NA Intergenic Intergenic -129487 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine-rich protein 1 protein-coding 561_WT_peak_6019 chr5 172192132 172192279 + 51 NA Intergenic Intergenic 5998 NM_004417 1843 Hs.171695 NM_004417 HPRD:02835 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 561_WT_peak_3913 chr19 57832170 57832365 + 51 NA intron (NM_213598, intron 1 of 3) intron (NM_213598, intron 1 of 3) 402 NM_213598 125919 Hs.202544 NM_213598 HPRD:15829 ZNF543 - zinc finger protein 543 protein-coding 561_WT_peak_6968 chr8 29952202 29952342 + 51 NA promoter-TSS (NM_001128208) promoter-TSS (NM_001128208) -650 NM_001128208 23484 Hs.146585 NM_015344 HPRD:09551 LEPROTL1 HSPC112|Vps55|my047 leptin receptor overlapping transcript-like 1 protein-coding 561_WT_peak_4652 chr20 45317893 45318144 + 51 NA exon (NM_033550, exon 1 of 2) exon (NM_033550, exon 1 of 2) 258 NM_033550 112858 Hs.440263 NM_033550 HPRD:12276 TP53RK BUD32|C20orf64|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding 561_WT_peak_1231 chr11 20408805 20408975 + 51 NA promoter-TSS (NM_001145167) promoter-TSS (NM_001145167) -186 NM_001145166 10196 Hs.152337 NM_005788 HPRD:11934 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 561_WT_peak_305 chr1 86862030 86862221 + 51 NA promoter-TSS (NM_020729) promoter-TSS (NM_020729) -100 NM_001184765 57489 Hs.149360 NM_020729 HPRD:11134 ODF2L dJ977L11.1 outer dense fiber of sperm tails 2-like protein-coding 561_WT_peak_821 chr1 244211344 244211545 + 50 NA promoter-TSS (NM_001278196) promoter-TSS (NM_001278196) -797 NM_001278196 10472 Hs.69997 NM_006352 HPRD:12231 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 561_WT_peak_2098 chr13 111365643 111365950 + 50 NA 5' UTR (NM_198219, exon 1 of 2) 5' UTR (NM_198219, exon 1 of 2) 186 NM_198219 3621 Hs.46700 NM_005537 HPRD:03337 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family, member 1 protein-coding 561_WT_peak_3662 chr19 15529394 15529564 + 50 NA intron (NR_111971, intron 1 of 15) CpG 453 NR_111971 26993 Hs.399800 NM_014371 HPRD:10641 AKAP8L HA95|HAP95|NAKAP|NAKAP95 A kinase (PRKA) anchor protein 8-like protein-coding 561_WT_peak_2585 chr15 85258943 85259224 + 50 NA intron (NM_001271918, intron 1 of 6) CpG 608 NM_001271918 23478 Hs.9534 NM_014300 HPRD:07503 SEC11A 1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895 SEC11 homolog A (S. cerevisiae) protein-coding 561_WT_peak_4261 chr2 112945778 112946012 + 50 NA TTS (NM_001128165) TTS (NM_001128165) 49933 NM_153214 129804 Hs.437696 NM_153214 HPRD:08783 FBLN7 TM14 fibulin 7 protein-coding 561_WT_peak_6621 chr7 25068372 25068547 + 50 NA Intergenic Intergenic -48628 NM_015550 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 561_WT_peak_2973 chr17 1626415 1626597 + 50 NA intron (NM_001163673, intron 1 of 9) intron (NM_001163673, intron 1 of 9) -1328 NM_001163811 124997 Hs.234572 NM_152348 HPRD:08748 WDR81 CAMRQ2|PPP1R166 WD repeat domain 81 protein-coding 561_WT_peak_3655 chr19 14493082 14493305 + 50 NA intron (NM_001025160, intron 1 of 18) MIR|SINE|MIR 1237 NM_001784 976 Hs.466039 NM_001784 HPRD:03130 CD97 TM7LN1 CD97 molecule protein-coding 561_WT_peak_5802 chr5 70897416 70897772 + 50 NA intron (NM_022132, intron 4 of 16) intron (NM_022132, intron 4 of 16) 14479 NM_022132 64087 Hs.604789 NM_022132 HPRD:01952 MCCC2 MCCB methylcrotonoyl-CoA carboxylase 2 (beta) protein-coding 561_WT_peak_2655 chr16 2205094 2205273 + 50 NA promoter-TSS (NR_002736) promoter-TSS (NR_002736) -77 NR_002736 26788 NR_002736 ENSG00000206630 SNORD60 RNU60|U60 small nucleolar RNA, C/D box 60 snoRNA 561_WT_peak_3644 chr19 13278417 13278622 + 50 NA Intergenic Intergenic 17237 NM_004907 9592 Hs.501629 NM_004907 HPRD:09997 IER2 ETR101 immediate early response 2 protein-coding 561_WT_peak_2395 chr14 106626956 106627153 + 50 NA Intergenic Intergenic -117215 NR_033375 338004 Hs.569411 NR_033375 ENSG00000229084 LINC00226 C14orf97|NCRNA00226 long intergenic non-protein coding RNA 226 ncRNA 561_WT_peak_1407 chr11 73077442 73077621 + 50 NA intron (NM_014786, intron 20 of 20) AluJb|SINE|Alu -9874 NM_152222 84957 Hs.533720 NM_032871 HPRD:15544 RELT TNFRSF19L|TRLT RELT tumor necrosis factor receptor protein-coding 561_WT_peak_5366 chr3 195681219 195681543 + 50 NA Intergenic CpG 35769 NR_003264 255812 Hs.566872 NR_003264 ENSG00000185485 SDHAP1 SDHAL1|SDHALP1 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 pseudo 561_WT_peak_3088 chr17 26662510 26662693 + 50 NA promoter-TSS (NM_021137) promoter-TSS (NM_021137) 53 NM_021137 7126 Hs.76090 NM_021137 HPRD:01856 TNFAIP1 B12|B61|BTBD34|EDP1|hBACURD2 tumor necrosis factor, alpha-induced protein 1 (endothelial) protein-coding 561_WT_peak_7063 chr8 87520500 87521004 + 50 NA exon (NM_016033, exon 1 of 10) exon (NM_016033, exon 1 of 10) 257 NM_001286719 51115 Hs.145386 NM_016033 HPRD:13042 RMDN1 FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 561_WT_peak_4233 chr2 99797460 99797677 + 50 NA promoter-TSS (NR_028356) promoter-TSS (NR_028356) 26 NR_028356 51263 Hs.346736 NM_016503 HPRD:14751 MRPL30 L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28 mitochondrial ribosomal protein L30 protein-coding 561_WT_peak_628 chr1 173836896 173837124 + 50 NA promoter-TSS (NR_003941) promoter-TSS (NR_003941) 115 NR_002578 60674 Hs.531856 NR_002578 ENSG00000234741 GAS5 NCRNA00030|SNHG2 growth arrest-specific 5 (non-protein coding) ncRNA 561_WT_peak_3138 chr17 35078372 35078382 + 50 NA Intergenic Intergenic 120352 NM_024864 79922 Hs.194864 NM_024864 HPRD:08656 MRM1 - mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) protein-coding 561_WT_peak_365 chr1 110448763 110448852 + 50 NA Intergenic Intergenic -4426 NM_000757 1435 Hs.173894 NM_000757 HPRD:00388 CSF1 CSF-1|MCSF colony stimulating factor 1 (macrophage) protein-coding 561_WT_peak_3806 chr19 46010569 46010790 + 50 NA promoter-TSS (NM_003370) promoter-TSS (NM_003370) -9 NM_003370 7408 Hs.515469 NM_003370 HPRD:03415 VASP - vasodilator-stimulated phosphoprotein protein-coding 561_WT_peak_1072 chr10 81077692 81077848 + 50 NA Intergenic Intergenic -29450 NM_005729 10105 Hs.381072 NM_005729 HPRD:06839 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 561_WT_peak_2329 chr14 90865933 90866125 + 50 NA intron (NM_006888, intron 1 of 5) AmnSINE1|SINE|Deu 2702 NM_006888 801 Hs.282410 NM_006888 HPRD:00241 CALM1 CALML2|CAMI|CPVT4|DD132|PHKD|caM calmodulin 1 (phosphorylase kinase, delta) protein-coding 561_WT_peak_4987 chr3 4887555 4887604 + 50 NA intron (NM_001168272, intron 60 of 60) intron (NM_001168272, intron 60 of 60) -52331 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 561_WT_peak_5712 chr5 41904484 41904743 + 50 NA intron (NM_175921, intron 1 of 5) CpG 143 NM_175921 285636 Hs.29899 NM_175921 HPRD:11258 C5orf51 - chromosome 5 open reading frame 51 protein-coding 561_WT_peak_2108 chr13 114908189 114908360 + 50 NA Intergenic Intergenic -10179 NM_007368 22821 Hs.593075 NM_007368 HPRD:05537 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 561_WT_peak_4821 chr21 47878087 47878717 + 50 NA promoter-TSS (NM_206891) promoter-TSS (NM_206891) -460 NM_206890 23181 Hs.189585 NM_015151 HPRD:07611 DIP2A C21orf106|DIP2 DIP2 disco-interacting protein 2 homolog A (Drosophila) protein-coding 561_WT_peak_1487 chr11 114030834 114031010 + 50 NA intron (NM_001018011, intron 3 of 6) intron (NM_001018011, intron 3 of 6) 99634 NM_001018011 7704 Hs.591945 NM_006006 HPRD:11762 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 561_WT_peak_4856 chr22 24255968 24256274 + 50 NA Intergenic CpG -15004 NR_038911 284889 Hs.632772 NR_038911 MIF-AS1 - MIF antisense RNA 1 ncRNA 561_WT_peak_4633 chr20 37433757 37433945 + 50 NA promoter-TSS (NM_001172735) promoter-TSS (NM_001172735) -497 NM_015568 26051 Hs.45719 NM_015568 HPRD:15168 PPP1R16B ANKRD4|TIMAP protein phosphatase 1, regulatory subunit 16B protein-coding 561_WT_peak_4606 chr20 33104484 33104594 + 50 NA intron (NM_001281727, intron 1 of 3) CpG 350 NM_001281728 83658 Hs.593920 NM_014183 HPRD:06203 DYNLRB1 BITH|BLP|DNCL2A|DNLC2A|ROBLD1 dynein, light chain, roadblock-type 1 protein-coding 561_WT_peak_2840 chr16 50298108 50298237 + 50 NA Intergenic L1ME3|LINE|L1 -2279 NM_001286057 113 Hs.513578 NM_001114 HPRD:02663 ADCY7 AC7 adenylate cyclase 7 protein-coding 561_WT_peak_1615 chr12 12966150 12966524 + 50 NA promoter-TSS (NM_016355) promoter-TSS (NM_016355) 57 NM_201224 51202 Hs.719938 NM_016355 HPRD:10863 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein-coding 561_WT_peak_1216 chr11 14521269 14521468 + 50 NA promoter-TSS (NM_016451) promoter-TSS (NM_016451) 36 NM_016451 1315 Hs.339278 NM_016451 HPRD:02981 COPB1 COPB coatomer protein complex, subunit beta 1 protein-coding 561_WT_peak_1303 chr11 60673962 60674177 + 50 NA promoter-TSS (NM_014502) promoter-TSS (NM_014502) -8 NM_014502 27339 Hs.502705 NM_014502 HPRD:12214 PRPF19 NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 pre-mRNA processing factor 19 protein-coding 561_WT_peak_3244 chr17 48556011 48556232 + 50 NA promoter-TSS (NM_018346) promoter-TSS (NM_018346) -69 NM_018346 55316 Hs.8033 NM_018346 HPRD:07737 RSAD1 - radical S-adenosyl methionine domain containing 1 protein-coding 561_WT_peak_1873 chr12 117362375 117362653 + 50 NA intron (NM_153348, intron 1 of 10) intron (NM_153348, intron 1 of 10) 13753 NM_012174 26259 Hs.624537 NM_012174 HPRD:16427 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 561_WT_peak_6102 chr6 12011430 12011643 + 50 NA Intergenic Intergenic -1188 NM_002114 3096 Hs.567284 NM_002114 HPRD:01925 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 561_WT_peak_3664 chr19 15947280 15947472 + 50 NA TTS (NR_015379) TTS (NR_015379) 7619 NR_015379 652995 Hs.644234 NR_015379 ENSG00000214049 UCA1 CUDR|LINC00178|NCRNA00178|UCAT1 urothelial cancer associated 1 (non-protein coding) ncRNA 561_WT_peak_137 chr1 28157395 28157656 + 50 NA 5' UTR (NM_002713, exon 1 of 6) 5' UTR (NM_002713, exon 1 of 6) 200 NM_138558 5511 Hs.533474 NM_002713 HPRD:04028 PPP1R8 ARD-1|ARD1|NIPP-1|NIPP1|PRO2047 protein phosphatase 1, regulatory subunit 8 protein-coding 561_WT_peak_707 chr1 206990248 206990438 + 50 NA intron (NM_153758, intron 1 of 5) LTR45C|LTR|ERV1 -11879 NM_013371 29949 Hs.661017 NM_013371 HPRD:05747 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 561_WT_peak_2717 chr16 19567094 19567489 + 50 NA intron (NM_001300743, intron 1 of 27) CpG 554 NM_001300743 57020 Hs.654964 NM_020314 HPRD:14455 C16orf62 - chromosome 16 open reading frame 62 protein-coding 561_WT_peak_6553 chr6 170101979 170102149 + 50 NA promoter-TSS (NM_001202550) promoter-TSS (NM_001202550) 95 NM_182552 253769 Hs.131903 NM_182552 HPRD:11352 WDR27 - WD repeat domain 27 protein-coding 561_WT_peak_5500 chr4 73935625 73935854 + 50 NA promoter-TSS (NM_173827) promoter-TSS (NM_173827) -263 NM_001297733 285521 Hs.356697 NM_173827 HPRD:08249 COX18 COX18HS COX18 cytochrome C oxidase assembly factor protein-coding 561_WT_peak_6951 chr8 27630039 27630282 + 50 NA promoter-TSS (NM_018246) promoter-TSS (NM_018246) 10 NM_018246 55246 Hs.445512 NM_018246 HPRD:07705 CCDC25 - coiled-coil domain containing 25 protein-coding 561_WT_peak_881 chr10 8458321 8458552 + 50 NA Intergenic Intergenic -148168 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 561_WT_peak_917 chr10 25013224 25013640 + 50 NA promoter-TSS (NM_020824) promoter-TSS (NM_020824) -835 NM_020824 57584 Hs.524195 NM_020824 HPRD:06445 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 561_WT_peak_3122 chr17 33415758 33415984 + 50 NA intron (NR_037713, intron 1 of 6) intron (NR_037713, intron 1 of 6) 477 NR_037713 117584 Hs.13680 NM_057178 HPRD:11489 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE-like domain containing E3 ubiquitin protein ligase protein-coding 561_WT_peak_1568 chr12 7070592 7070762 + 50 NA TTS (NM_002831) TTS (NM_002831) -2185 NR_029779 406985 NR_029779 miRBase:MI0000650 MIR200C MIRN200C microRNA 200c ncRNA 561_WT_peak_4745 chr21 15755893 15756224 + 50 NA promoter-TSS (NM_006948) promoter-TSS (NM_006948) -549 NM_006948 6782 Hs.352341 NM_006948 HPRD:03061 HSPA13 STCH heat shock protein 70kDa family, member 13 protein-coding 561_WT_peak_5228 chr3 121379539 121379677 + 50 NA intron (NM_005335, intron 1 of 13) intron (NM_005335, intron 1 of 13) 187 NM_001292041 3059 Hs.14601 NM_005335 HPRD:03199 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 561_WT_peak_3386 chr17 79479643 79479821 + 50 NA 5' UTR (NM_001199954, exon 1 of 6) 5' UTR (NM_001199954, exon 1 of 6) 160 NR_037688 71 Hs.514581 NM_001614 HPRD:00017 ACTG1 ACT|ACTG|BRWS2|DFNA20|DFNA26|HEL-176 actin, gamma 1 protein-coding 561_WT_peak_1242 chr11 33182795 33183037 + 50 NA promoter-TSS (NR_034027) promoter-TSS (NR_034027) 121 NM_001033505 1479 Hs.44402 NM_001326 HPRD:02651 CSTF3 CSTF-77 cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa protein-coding 561_WT_peak_2906 chr16 74701070 74701245 + 50 NA promoter-TSS (NM_018124) promoter-TSS (NM_018124) -378 NM_018124 55159 Hs.567525 NM_018124 HPRD:07678 RFWD3 RNF201 ring finger and WD repeat domain 3 protein-coding 561_WT_peak_4392 chr2 190539337 190539586 + 50 NA Intergenic CpG -1250 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 561_WT_peak_3070 chr17 19188001 19188178 + 50 NA intron (NM_148921, intron 3 of 9) intron (NM_148921, intron 3 of 9) 13383 NR_046824 100874309 Hs.733657 NR_046824 EPN2-IT1 - EPN2 intronic transcript 1 (non-protein coding) ncRNA 561_WT_peak_923 chr10 27149935 27150138 + 50 NA promoter-TSS (NM_001178116) promoter-TSS (NM_001178116) -20 NM_001178121 10006 Hs.508148 NM_005470 HPRD:04336 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl-interactor 1 protein-coding 561_WT_peak_2709 chr16 16055029 16055303 + 50 NA intron (NM_004996, intron 1 of 30) intron (NM_004996, intron 1 of 30) 11732 NM_004996 4363 Hs.391464 NM_004996 HPRD:01153 ABCC1 ABC29|ABCC|GS-X|MRP|MRP1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding 561_WT_peak_2909 chr16 75467161 75467373 + 50 NA 5' UTR (NM_006324, exon 1 of 7) 5' UTR (NM_006324, exon 1 of 7) 120 NM_006324 10428 Hs.461361 NM_006324 HPRD:16282 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 561_WT_peak_7456 chr9 132565405 132565581 + 50 NA promoter-TSS (NM_014506) promoter-TSS (NM_014506) 61 NM_014506 27348 Hs.252682 NM_014506 HPRD:16270 TOR1B DQ1 torsin family 1, member B (torsin B) protein-coding 561_WT_peak_1021 chr10 69644197 69644475 + 50 NA promoter-TSS (NM_001142498) promoter-TSS (NM_001142498) -91 NM_012238 23411 Hs.369779 NM_012238 HPRD:08381 SIRT1 SIR2L1 sirtuin 1 protein-coding 561_WT_peak_3699 chr19 20959136 20959306 + 50 NA Intergenic Intergenic -114819 NM_145297 199777 Hs.657001 NM_145297 HPRD:15881 ZNF626 - zinc finger protein 626 protein-coding 561_WT_peak_6343 chr6 46143324 46143494 + 50 NA Intergenic Intergenic -4662 NM_001290073 59084 Hs.35198 NM_021572 HPRD:13272 ENPP5 NPP-5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) protein-coding 561_WT_peak_6462 chr6 126277907 126278160 + 50 NA 5' UTR (NM_138571, exon 1 of 5) 5' UTR (NM_138571, exon 1 of 5) 172 NM_138571 135114 Hs.72325 NM_138571 HPRD:17107 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 561_WT_peak_6766 chr7 99214516 99214692 + 50 NA promoter-TSS (NM_145115) promoter-TSS (NM_145115) 33 NM_145115 221785 Hs.446297 NM_145115 HPRD:15807 ZSCAN25 ZNF498 zinc finger and SCAN domain containing 25 protein-coding 561_WT_peak_1423 chr11 78002866 78003079 + 50 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 49954 NM_012296 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 561_WT_peak_4058 chr2 46926102 46926293 + 50 NA promoter-TSS (NM_144949) promoter-TSS (NM_144949) 98 NM_014011 9655 Hs.468426 NM_014011 HPRD:06159 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 561_WT_peak_5814 chr5 74806982 74807171 + 50 NA promoter-TSS (NM_016218) promoter-TSS (NM_016218) 378 NM_005713 10087 Hs.270437 NM_005713 HPRD:05246 COL4A3BP CERT|CERTL|GPBP|STARD11 collagen, type IV, alpha 3 (Goodpasture antigen) binding protein protein-coding 561_WT_peak_3126 chr17 33569171 33569597 + 50 NA promoter-TSS (NM_144975) promoter-TSS (NM_144975) -702 NM_144975 162394 Hs.709347 NM_144975 SLFN5 - schlafen family member 5 protein-coding 561_WT_peak_3138-2 chr17 35078185 35078323 + 50 NA Intergenic Intergenic 120229 NM_024864 79922 Hs.194864 NM_024864 HPRD:08656 MRM1 - mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) protein-coding 561_WT_peak_6899 chr7 150365815 150365985 + 50 NA Intergenic Intergenic -16894 NM_015660 26157 Hs.647071 NM_015660 HPRD:16279 GIMAP2 HIMAP2|IAN12|IMAP2 GTPase, IMAP family member 2 protein-coding 561_WT_peak_1535 chr11 134146100 134146291 + 50 NA promoter-TSS (NM_001080407) promoter-TSS (NM_001080407) -80 NM_001080407 112937 Hs.721382 NM_138416 HPRD:08814 GLB1L3 - galactosidase, beta 1-like 3 protein-coding 561_WT_peak_7582 chrX 75368973 75369367 + 50 NA Intergenic Intergenic -23594 NM_001300888 51260 Hs.370100 NM_016500 HPRD:06659 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 561_WT_peak_3958 chr2 9796457 9796712 + 50 NA Intergenic Intergenic -25400 NM_006826 10971 Hs.74405 NM_006826 HPRD:00886 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta protein-coding 561_WT_peak_1756 chr12 68671577 68671872 + 50 NA Intergenic Intergenic -24443 NM_020525 50616 Hs.287369 NM_020525 HPRD:05621 IL22 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 interleukin 22 protein-coding 561_WT_peak_2145 chr14 24657953 24658265 + 50 NA promoter-TSS (NM_024658) promoter-TSS (NM_024658) 15 NM_024658 79711 Hs.411865 NM_024658 HPRD:07022 IPO4 Imp4 importin 4 protein-coding 561_WT_peak_895 chr10 15165706 15165968 + 50 NA intron (NM_004808, intron 8 of 11) intron (NM_004808, intron 8 of 11) -26519 NM_153244 221060 Hs.567777 NM_153244 HPRD:16572 C10orf111 bA455B2.4 chromosome 10 open reading frame 111 protein-coding 561_WT_peak_2754 chr16 28223193 28223501 + 50 NA promoter-TSS (NM_015171) promoter-TSS (NM_015171) -108 NM_015171 23214 Hs.460468 NM_015171 HPRD:10525 XPO6 EXP6|RANBP20 exportin 6 protein-coding 561_WT_peak_235 chr1 52499181 52499430 + 50 NA non-coding (NR_046406, exon 3 of 3) non-coding (NR_046406, exon 3 of 3) 167 NM_138417 112970 Hs.476033 NM_138417 HPRD:14471 KTI12 SBBI81|TOT4 KTI12 homolog, chromatin associated (S. cerevisiae) protein-coding 561_WT_peak_3638 chr19 12903221 12903528 + 50 NA exon (NM_002229, exon 1 of 1) exon (NM_002229, exon 1 of 1) 1064 NM_002229 3726 Hs.25292 NM_002229 HPRD:01303 JUNB AP-1 jun B proto-oncogene protein-coding 561_WT_peak_2309 chr14 78174320 78174585 + 50 NA promoter-TSS (NM_031210) promoter-TSS (NM_031210) 38 NR_052025 81892 Hs.655105 NM_031210 HPRD:12639 SLIRP C14orf156|DC50|PD04872 SRA stem-loop interacting RNA binding protein protein-coding 561_WT_peak_4796 chr21 38936385 38936567 + 50 NA Intergenic CpG 143874 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 561_WT_peak_2771 chr16 29827104 29827333 + 49 NA promoter-TSS (NM_024516) promoter-TSS (NM_024516) -310 NM_024516 79447 Hs.702841 NM_024516 PAGR1 C16orf53|GAS|PA1 PAXIP1 associated glutamate-rich protein 1 protein-coding 561_WT_peak_4354 chr2 169103387 169103570 + 49 NA intron (NM_013233, intron 1 of 17) CpG 627 NM_013233 27347 Hs.276271 NM_013233 HPRD:09627 STK39 DCHT|PASK|SPAK serine threonine kinase 39 protein-coding 561_WT_peak_4165 chr2 85199253 85199430 + 49 NA intron (NM_020122, intron 1 of 6) intron (NM_020122, intron 1 of 6) 1110 NM_020122 56888 Hs.654968 NM_020122 HPRD:13761 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 561_WT_peak_5969 chr5 142784763 142784945 + 49 NA promoter-TSS (NM_001018076) promoter-TSS (NM_001018076) -809 NM_001018076 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 561_WT_peak_3233 chr17 47269207 47269431 + 49 NA Intergenic Intergenic 17424 NM_031498 2793 Hs.181781 NM_031498 HPRD:06792 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 protein-coding 561_WT_peak_159 chr1 33117299 33117473 + 49 NA intron (NM_001135256, intron 1 of 11) intron (NM_001135256, intron 1 of 11) 427 NM_001135256 5928 Hs.16003 NM_005610 HPRD:04232 RBBP4 NURF55|RBAP48|lin-53 retinoblastoma binding protein 4 protein-coding 561_WT_peak_4874 chr22 30233985 30234202 + 49 NA intron (NM_001242906, intron 1 of 18) CpG 200 NM_001242906 84164 Hs.731754 NM_032204 HPRD:16515 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 561_WT_peak_3140 chr17 35849355 35849629 + 49 NA promoter-TSS (NM_007026) promoter-TSS (NM_007026) -459 NM_007026 11072 Hs.91448 NM_007026 HPRD:09427 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 561_WT_peak_2975-2 chr17 2163520 2163548 + 49 NA intron (NM_017575, intron 8 of 18) intron (NM_017575, intron 8 of 18) 5959 NM_001256827 23293 Hs.448342 NM_017575 HPRD:06502 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_3358 chr17 74732917 74733507 + 49 NA promoter-TSS (NM_001242533) promoter-TSS (NM_001242533) 281 NR_036608 6427 Hs.584801 NM_003016 HPRD:02888 SRSF2 PR264|SC-35|SC35|SFRS2|SFRS2A|SRp30b serine/arginine-rich splicing factor 2 protein-coding 561_WT_peak_7546 chrX 49126620 49126811 + 49 NA exon (NM_033215, exon 1 of 4) exon (NM_033215, exon 1 of 4) 409 NM_001184745 89801 Hs.433652 NM_033215 HPRD:15170 PPP1R3F HB2E|R3F protein phosphatase 1, regulatory subunit 3F protein-coding 561_WT_peak_2214 chr14 53619173 53619394 + 49 NA promoter-TSS (NR_110062) promoter-TSS (NR_110062) 763 NM_001160147 80821 Hs.125525 NM_030637 HPRD:07482 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 561_WT_peak_2654 chr16 2059957 2060134 + 49 NA promoter-TSS (NM_178167) promoter-TSS (NM_178167) -223 NM_178167 90850 Hs.343828 NM_178167 HPRD:11732 ZNF598 - zinc finger protein 598 protein-coding 561_WT_peak_1590 chr12 10456730 10457015 + 49 NA promoter-TSS (NM_001114396) promoter-TSS (NM_001114396) -178 NM_001114396 3824 Hs.562457 NM_002262 HPRD:04204 KLRD1 CD94 killer cell lectin-like receptor subfamily D, member 1 protein-coding 561_WT_peak_5121 chr3 52311865 52312036 + 49 NA intron (NM_025222, intron 1 of 8) intron (NM_025222, intron 1 of 8) 709 NM_025222 80335 Hs.194110 NM_025222 HPRD:15183 WDR82 MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A WD repeat domain 82 protein-coding 561_WT_peak_5875 chr5 110560050 110560220 + 49 NA 5' UTR (NM_001744, exon 1 of 11) 5' UTR (NM_001744, exon 1 of 11) 188 NM_001744 814 Hs.591269 NM_001744 CAMK4 CaMK IV|CaMK-GR|IV|caMK calcium/calmodulin-dependent protein kinase IV protein-coding 561_WT_peak_7353 chr9 96213363 96213560 + 49 NA promoter-TSS (NM_014612) promoter-TSS (NM_014612) -517 NM_001286723 23196 Hs.372003 NM_014612 HPRD:12928 FAM120A C9orf10|DNAPTP1|DNAPTP5|OSSA family with sequence similarity 120A protein-coding 561_WT_peak_1626 chr12 22778140 22778404 + 49 NA exon (NM_018638, exon 1 of 8) exon (NM_018638, exon 1 of 8) 196 NM_001039481 55500 Hs.29464 NM_018638 HPRD:09934 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 561_WT_peak_4337 chr2 157292649 157293027 + 49 NA promoter-TSS (NM_000408) promoter-TSS (NM_000408) -62 NM_000408 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 561_WT_peak_2204 chr14 50779376 50779603 + 49 NA promoter-TSS (NM_024884) promoter-TSS (NM_024884) 442 NR_033761 27109 Hs.438489 NM_015684 HPRD:12503 ATP5S ATPW|FB|HSU79253 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B) protein-coding 561_WT_peak_3183 chr17 40608887 40609070 + 49 NA Intergenic Intergenic -1884 NM_001130021 535 Hs.463074 NM_005177 HPRD:01886 ATP6V0A1 ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1 ATPase, H+ transporting, lysosomal V0 subunit a1 protein-coding 561_WT_peak_5157 chr3 73046006 73046222 + 49 NA promoter-TSS (NM_174907) promoter-TSS (NM_174907) -5 NM_174907 151987 Hs.431092 NM_174907 HPRD:11453 PPP4R2 PP4R2 protein phosphatase 4, regulatory subunit 2 protein-coding 561_WT_peak_5059 chr3 37284883 37285208 + 49 NA exon (NM_001172713, exon 1 of 23) exon (NM_001172713, exon 1 of 23) 363 NM_001172713 2803 Hs.344151 NM_002078 HPRD:03941 GOLGA4 GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 561_WT_peak_1563 chr12 6976763 6976945 + 49 NA promoter-TSS (NM_001258026) promoter-TSS (NM_001258026) 161 NM_000365 7167 Hs.524219 NM_000365 HPRD:01833 TPI1 HEL-S-49|TIM|TPI|TPID triosephosphate isomerase 1 protein-coding 561_WT_peak_4711 chr20 60696580 60696976 + 49 NA promoter-TSS (NM_144703) promoter-TSS (NM_144703) -739 NM_144703 149986 Hs.105379 NM_144703 HPRD:12768 LSM14B C20orf40|FAM61B|LSM13|RAP55B|bA11M20.3 LSM14B, SCD6 homolog B (S. cerevisiae) protein-coding 561_WT_peak_4686 chr20 50114348 50114614 + 49 NA intron (NM_001258296, intron 3 of 10) intron (NM_001258296, intron 3 of 10) 44777 NM_001258297 4773 Hs.744148 NM_012340 HPRD:02730 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 protein-coding 561_WT_peak_3035 chr17 8089577 8089762 + 49 NA promoter-TSS (NR_039746) promoter-TSS (NR_039746) -594 NR_039746 100616406 NR_039746 MIR4521 - microRNA 4521 ncRNA 561_WT_peak_6548 chr6 160883524 160883773 + 49 NA Intergenic Intergenic 48508 NR_028092 80350 Hs.654503 NM_024492 HPRD:17441 LPAL2 APOA2|APOAL|APOARGC lipoprotein, Lp(a)-like 2, pseudogene pseudo 561_WT_peak_6442 chr6 112125830 112126035 + 49 NA intron (NM_002037, intron 2 of 13) intron (NM_002037, intron 2 of 13) -45598 NM_153048 2534 Hs.390567 NM_002037 HPRD:00655 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 561_WT_peak_5395 chr4 1872293 1872651 + 49 NA promoter-TSS (NM_001042424) promoter-TSS (NM_001042424) -651 NM_001042424 7468 Hs.113876 NM_007331 HPRD:04259 WHSC1 MMSET|NSD2|REIIBP|TRX5|WHS Wolf-Hirschhorn syndrome candidate 1 protein-coding 561_WT_peak_4253 chr2 111615966 111616145 + 49 NA intron (NM_001142807, intron 10 of 17) intron (NM_001142807, intron 10 of 17) 125905 NM_001142807 55289 Hs.253320 NM_018308 HPRD:12418 ACOXL - acyl-CoA oxidase-like protein-coding 561_WT_peak_7515 chrX 24072707 24072950 + 49 NA promoter-TSS (NM_001415) promoter-TSS (NM_001415) -237 NM_001415 1968 Hs.539684 NM_001415 EIF2S3 EIF2|EIF2G|EIF2gamma|eIF-2gA eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa protein-coding 561_WT_peak_3323 chr17 66255223 66255583 + 49 NA promoter-TSS (NM_014960) promoter-TSS (NM_014960) 80 NM_014960 22901 Hs.437249 NM_014960 ARSG - arylsulfatase G protein-coding 561_WT_peak_5290 chr3 151034449 151034600 + 49 NA 5' UTR (NM_023915, exon 1 of 3) 5' UTR (NM_023915, exon 1 of 3) 112 NM_023915 53836 Hs.591292 NM_023915 HPRD:16209 GPR87 GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 561_WT_peak_7416 chr9 124132022 124132201 + 49 NA intron (NR_073037, intron 1 of 7) CpG 471 NR_073037 2040 Hs.253903 NM_004099 HPRD:00585 STOM BND7|EPB7|EPB72 stomatin protein-coding 561_WT_peak_4116 chr2 68431052 68431113 + 49 NA intron (NM_000945, intron 2 of 5) intron (NM_000945, intron 2 of 5) 46077 NM_020143 56902 Hs.262858 NM_020143 HPRD:14250 PNO1 KHRBP1|RRP20 partner of NOB1 homolog (S. cerevisiae) protein-coding 561_WT_peak_3509 chr18 54318626 54318848 + 49 NA 5' UTR (NM_052834, exon 1 of 27) 5' UTR (NM_052834, exon 1 of 27) 121 NM_052834 23335 Hs.465213 NM_015285 HPRD:10306 WDR7 TRAG WD repeat domain 7 protein-coding 561_WT_peak_996 chr10 52396401 52396574 + 49 NA Intergenic Intergenic -12750 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 561_WT_peak_647 chr1 183440521 183440863 + 49 NA promoter-TSS (NM_201568) promoter-TSS (NM_201568) 425 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 561_WT_peak_367 chr1 110754184 110754396 + 49 NA non-coding (NR_036437, exon 1 of 5) non-coding (NR_036437, exon 1 of 5) 954 NM_004978 3749 Hs.153521 NM_004978 HPRD:08887 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel, Shaw-related subfamily, member 4 protein-coding 561_WT_peak_4211 chr2 96811038 96811274 + 49 NA promoter-TSS (NM_004418) promoter-TSS (NM_004418) 23 NM_004418 1844 Hs.1183 NM_004418 HPRD:04348 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 561_WT_peak_6070 chr6 292550 292851 + 49 NA intron (NR_104475, intron 1 of 3) CpG 643 NM_001286555 56940 Hs.29106 NM_020185 HPRD:13255 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 561_WT_peak_4404 chr2 192058811 192059091 + 49 NA Intergenic Intergenic -42629 NM_001243835 6775 Hs.80642 NM_003151 HPRD:02779 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 561_WT_peak_6742 chr7 87505879 87506196 + 49 NA promoter-TSS (NM_018843) promoter-TSS (NM_018843) -345 NM_018843 55972 Hs.208414 NM_018843 HPRD:14372 SLC25A40 MCFP solute carrier family 25, member 40 protein-coding 561_WT_peak_1166 chr10 126605106 126605355 + 49 NA Intergenic CpG -25462 NM_017580 54764 Hs.595158 NM_017580 HPRD:11738 ZRANB1 TRABID zinc finger, RAN-binding domain containing 1 protein-coding 561_WT_peak_1936 chr12 133757913 133758151 + 49 NA promoter-TSS (NM_001165885) promoter-TSS (NM_001165885) -28 NM_001165881 10795 Hs.124047 NM_003415 HPRD:05300 ZNF268 HZF3 zinc finger protein 268 protein-coding 561_WT_peak_109 chr1 25174515 25174869 + 49 NA Intergenic CpG 71215 NR_106789 102465437 NR_106789 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 561_WT_peak_7131 chr8 124253314 124253696 + 49 NA exon (NM_032847, exon 1 of 6) exon (NM_032847, exon 1 of 6) 133 NM_032847 84933 Hs.707401 NM_032847 HPRD:08605 C8orf76 - chromosome 8 open reading frame 76 protein-coding 561_WT_peak_5125 chr3 53080421 53080722 + 49 NA promoter-TSS (NM_016329) promoter-TSS (NM_016329) -482 NM_016329 51460 Hs.343679 NM_016329 HPRD:09539 SFMBT1 RU1|SFMBT|hSFMBT Scm-like with four mbt domains 1 protein-coding 561_WT_peak_4366 chr2 172543803 172544017 + 49 NA promoter-TSS (NM_001271786) promoter-TSS (NM_001271786) -9 NM_001271788 1781 Hs.546250 NM_001378 HPRD:04512 DYNC1I2 DNCI2|IC2 dynein, cytoplasmic 1, intermediate chain 2 protein-coding 561_WT_peak_6022 chr5 172386151 172386438 + 49 NA promoter-TSS (NM_016093) promoter-TSS (NM_016093) 77 NR_026682 100268168 Hs.519766 NR_026682 ENSG00000204758 LOC100268168 - uncharacterized LOC100268168 ncRNA 561_WT_peak_5510 chr4 78775733 78775907 + 49 NA Intergenic Intergenic -7985 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 561_WT_peak_1821 chr12 98909437 98909653 + 49 NA non-coding (NR_027157, exon 2 of 2) non-coding (NR_027157, exon 2 of 2) 194 NM_003276 7112 Hs.11355 NM_003276 HPRD:01777 TMPO CMD1T|LAP2|LEMD4|PRO0868|TP thymopoietin protein-coding 561_WT_peak_884 chr10 11208228 11208417 + 49 NA intron (NM_001025076, intron 2 of 14) intron (NM_001025076, intron 2 of 14) 1329 NM_001083591 10659 Hs.309288 NM_006561 HPRD:03964 CELF2 BRUNOL3|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding 561_WT_peak_4003 chr2 27994641 27994834 + 49 NA intron (NM_145330, intron 1 of 2) CpG 153 NM_145330 9553 Hs.515879 NM_004891 HPRD:14753 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 561_WT_peak_7593 chrX 100663557 100663699 + 49 NA promoter-TSS (NM_000169) promoter-TSS (NM_000169) 507 NM_019597 3188 Hs.432485 NM_019597 HPRD:03022 HNRNPH2 FTP3|HNRPH'|HNRPH2|hnRNPH' heterogeneous nuclear ribonucleoprotein H2 (H') protein-coding 561_WT_peak_5837 chr5 81047277 81047556 + 49 NA promoter-TSS (NM_001256734) promoter-TSS (NM_001256734) -344 NM_001256736 23635 Hs.102735 NM_012446 SSBP2 HSPC116|SOSS-B2 single-stranded DNA binding protein 2 protein-coding 561_WT_peak_7334 chr9 92330316 92330497 + 49 NA intron (NR_024280, intron 5 of 5) MLT1F2-int|LTR|ERVL-MaLR 75708 NR_024280 100129066 Hs.125947 NR_024280 UNQ6494 - uncharacterized LOC100129066 ncRNA 561_WT_peak_1113 chr10 99473878 99474071 + 49 NA exon (NM_031484, exon 1 of 2) exon (NM_031484, exon 1 of 2) 509 NM_031484 83742 Hs.744073 NM_031484 HPRD:14364 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 561_WT_peak_6853 chr7 134855423 134855683 + 49 NA promoter-TSS (NM_001243754) promoter-TSS (NM_001243754) 25 NM_001243749 78996 Hs.732134 NM_024033 HPRD:08333 C7orf49 MRI chromosome 7 open reading frame 49 protein-coding 561_WT_peak_2607 chr15 91373515 91373773 + 49 NA Intergenic FLAM_A|SINE|Alu -38178 NM_002569 5045 Hs.513153 NM_002569 HPRD:00653 FURIN FUR|PACE|PCSK3|SPC1 furin (paired basic amino acid cleaving enzyme) protein-coding 561_WT_peak_6310 chr6 37019213 37019383 + 49 NA Intergenic Intergenic 45875 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 561_WT_peak_4364 chr2 172175706 172175870 + 49 NA 3' UTR (NM_024770, exon 10 of 10) 3' UTR (NM_024770, exon 10 of 10) -87964 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled-like kinase 1 protein-coding 561_WT_peak_2975 chr17 2163299 2163425 + 49 NA intron (NM_017575, intron 8 of 18) intron (NM_017575, intron 8 of 18) 6131 NM_001256827 23293 Hs.448342 NM_017575 HPRD:06502 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_5015 chr3 14444071 14444292 + 49 NA exon (NM_001134367, exon 1 of 23) exon (NM_001134367, exon 1 of 23) 105 NM_001134368 6533 Hs.529488 NM_003043 HPRD:01734 SLC6A6 TAUT solute carrier family 6 (neurotransmitter transporter), member 6 protein-coding 561_WT_peak_1454 chr11 93517481 93517696 + 49 NA 5' UTR (NM_004268, exon 1 of 12) 5' UTR (NM_004268, exon 1 of 12) 183 NM_004268 9440 Hs.444931 NM_004268 MED17 CRSP6|CRSP77|DRIP80|TRAP80 mediator complex subunit 17 protein-coding 561_WT_peak_492 chr1 149784647 149785092 + 49 NA promoter-TSS (NM_001161334) promoter-TSS (NM_001161334) 367 NM_001123375 653604 Hs.712062 NM_001123375 ENSG00000183598 HIST2H3D - histone cluster 2, H3d protein-coding 561_WT_peak_6712 chr7 73588734 73588976 + 49 NA intron (NM_031992, intron 1 of 5) CpG 149 NM_022170 7458 Hs.520943 NM_022170 HPRD:11940 EIF4H WBSCR1|WSCR1|eIF-4H eukaryotic translation initiation factor 4H protein-coding 561_WT_peak_4700 chr20 55973276 55973400 + 49 NA intron (NM_001291780, intron 4 of 4) intron (NM_001291780, intron 4 of 4) 6884 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 561_WT_peak_5407 chr4 6717767 6717923 + 49 NA promoter-TSS (NM_018366) promoter-TSS (NM_018366) 3 NM_018366 55330 Hs.7570 NM_018366 HPRD:12035 BLOC1S4 BCAS4L|BLOS4|CNO biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino protein-coding 561_WT_peak_89 chr1 19923467 19923773 + 49 NA intron (NM_001204089, intron 1 of 3) CpG 149 NM_001204082 440574 Hs.466662 NM_001032363 ENSG00000173436 MINOS1 C1orf151|MIO10 mitochondrial inner membrane organizing system 1 protein-coding 561_WT_peak_3089 chr17 26684604 26684879 + 49 NA promoter-TSS (NM_152464) promoter-TSS (NM_152464) 54 NM_152464 147007 Hs.707906 NM_152464 TMEM199 C17orf32 transmembrane protein 199 protein-coding 561_WT_peak_5546 chr4 89300440 89300661 + 49 NA intron (NM_017912, intron 1 of 22) intron (NM_017912, intron 1 of 22) 659 NM_017912 55008 Hs.529317 NM_017912 HPRD:13647 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 561_WT_peak_5657 chr4 190970919 190971115 + 49 NA Intergenic Intergenic -14640 NR_121644 100419743 NR_121644 DBET DBE-T D4Z4 binding element transcript (non-protein coding) ncRNA 561_WT_peak_3895 chr19 54975748 54975994 + 48 NA promoter-TSS (NM_198988) promoter-TSS (NM_198988) -977 NM_198988 94059 Hs.590976 NM_198988 HPRD:13986 LENG9 - leukocyte receptor cluster (LRC) member 9 protein-coding 561_WT_peak_983 chr10 46090271 46090530 + 48 NA promoter-TSS (NM_145021) promoter-TSS (NM_145021) -46 NM_145021 220972 Hs.499489 NM_145021 HPRD:17466 MARCH8 MARCH-VIII|MIR|RNF178|c-MIR membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase protein-coding 561_WT_peak_2 chr1 29090 29263 + 48 NA intron (NR_024540, intron 1 of 10) CpG 194 NR_024540 653635 Hs.446466 NR_024540 ENSG00000227232 WASH7P FAM39F|WASH5P WAS protein family homolog 7 pseudogene pseudo 561_WT_peak_4381 chr2 179278392 179278684 + 48 NA non-coding (NR_110205, exon 1 of 4) non-coding (NR_110205, exon 1 of 4) 152 NR_110205 101927027 Hs.715694 NR_110204 ENSG00000223960 LOC101927027 - uncharacterized LOC101927027 ncRNA 561_WT_peak_6334 chr6 43484875 43485061 + 48 NA promoter-TSS (NM_015388) promoter-TSS (NM_015388) 191 NM_203290 9533 Hs.743509 NM_004875 HPRD:09661 POLR1C RPA39|RPA40|RPA5|RPAC1|TCS3 polymerase (RNA) I polypeptide C, 30kDa protein-coding 561_WT_peak_6154 chr6 26205514 26205802 + 48 NA TTS (NM_003545) TTS (NM_003545) 785 NM_003545 8367 Hs.662174 NM_003545 HIST1H4E H4/j|H4FJ histone cluster 1, H4e protein-coding 561_WT_peak_6380 chr6 79788401 79788619 + 48 NA promoter-TSS (NM_017934) promoter-TSS (NM_017934) -499 NM_017934 55023 Hs.511817 NM_017934 HPRD:10152 PHIP BRWD2|DCAF14|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 561_WT_peak_4062 chr2 47748509 47748832 + 48 NA exon (NM_022055, exon 2 of 2) exon (NM_022055, exon 2 of 2) -6006 NR_120602 644093 Hs.734158 NR_120602 HCG2040054 - uncharacterized LOC644093 ncRNA 561_WT_peak_6378 chr6 79577087 79577267 + 48 NA promoter-TSS (NM_001010844) promoter-TSS (NM_001010844) -84 NM_001010844 134728 Hs.656212 NM_001010844 HPRD:17157 IRAK1BP1 AIP70|SIMPL interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding 561_WT_peak_679 chr1 202976149 202976320 + 48 NA promoter-TSS (NM_138391) promoter-TSS (NM_138391) 159 NR_036557 100506747 Hs.642024 NR_036557 LOC100506747 - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog pseudo 561_WT_peak_3894 chr19 54974627 54974970 + 48 NA promoter-TSS (NM_198988) promoter-TSS (NM_198988) 96 NM_198988 94059 Hs.590976 NM_198988 HPRD:13986 LENG9 - leukocyte receptor cluster (LRC) member 9 protein-coding 561_WT_peak_4111 chr2 65658834 65658934 + 48 NA intron (NM_181784, intron 1 of 5) CpG 772 NM_181784 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 561_WT_peak_2838 chr16 50058878 50059060 + 48 NA promoter-TSS (NM_001281789) promoter-TSS (NM_001281789) -148 NR_104042 255919 Hs.59134 NM_153261 HPRD:08784 CNEP1R1 C16orf69|NEP1-R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 561_WT_peak_4676 chr20 48763498 48763727 + 48 NA intron (NM_199129, intron 1 of 5) intron (NM_199129, intron 1 of 5) 6723 NM_001162505 387521 Hs.744839 NM_199129 HPRD:17257 TMEM189 KUA transmembrane protein 189 protein-coding 561_WT_peak_286 chr1 70687116 70687472 + 48 NA intron (NM_001190987, intron 1 of 12) intron (NM_001190987, intron 1 of 12) 15929 NM_001190987 9295 Hs.479693 NM_004768 HPRD:03599 SRSF11 NET2|SFRS11|dJ677H15.2|p54 serine/arginine-rich splicing factor 11 protein-coding 561_WT_peak_1214 chr11 13689632 13689802 + 48 NA promoter-TSS (NM_032228) promoter-TSS (NM_032228) -489 NM_032228 84188 Hs.501991 NM_032228 HPRD:14724 FAR1 MLSTD2|SDR10E1 fatty acyl CoA reductase 1 protein-coding 561_WT_peak_6518 chr6 151711957 151712174 + 48 NA intron (NM_020861, intron 1 of 2) CpG 612 NM_020861 57621 Hs.520073 NM_020861 HPRD:10314 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 561_WT_peak_6646 chr7 39662857 39663042 + 48 NA promoter-TSS (NM_005402) promoter-TSS (NM_005402) -203 NM_005402 5898 Hs.6906 NM_005402 HPRD:01549 RALA RAL v-ral simian leukemia viral oncogene homolog A (ras related) protein-coding 561_WT_peak_4396 chr2 191399093 191399389 + 48 NA intron (NM_001142645, intron 1 of 8) CpG 227 NM_001142645 100131211 Hs.659824 NM_001142645 TMEM194B - transmembrane protein 194B protein-coding 561_WT_peak_3650 chr19 14192133 14192344 + 48 NA TTS (NM_001277378) TTS (NM_001277378) 4369 NM_001277378 646457 Hs.569971 NM_001277378 ENSG00000188032 C19orf67 - chromosome 19 open reading frame 67 protein-coding 561_WT_peak_5878 chr5 112358533 112358703 + 48 NA TTS (NM_152624) TTS (NM_152624) 46211 NM_001242377 167227 Hs.443875 NM_152624 HPRD:13125 DCP2 NUDT20 decapping mRNA 2 protein-coding 561_WT_peak_1083 chr10 89102787 89102975 + 48 NA promoter-TSS (NR_024397) promoter-TSS (NR_024397) -566 NR_024397 728190 Hs.647195 NR_024397 ENSG00000223482 NUTM2A-AS1 FAM22A-AS1 NUTM2A antisense RNA 1 ncRNA 561_WT_peak_4715 chr20 61282836 61283038 + 48 NA intron (NM_016354, intron 1 of 11) intron (NM_016354, intron 1 of 11) 9140 NM_016354 28231 Hs.235782 NM_016354 HPRD:11582 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family, member 4A1 protein-coding 561_WT_peak_1724 chr12 56511761 56512100 + 48 NA promoter-TSS (NM_032786) promoter-TSS (NM_032786) -100 NM_032786 84872 Hs.632706 NM_032786 HPRD:07860 ZC3H10 ZC3HDC10 zinc finger CCCH-type containing 10 protein-coding 561_WT_peak_6534 chr6 157971265 157971464 + 48 NA intron (NM_153746, intron 2 of 8) intron (NM_153746, intron 2 of 8) 21200 NR_037463 100500899 NR_037463 MIR3692 - microRNA 3692 ncRNA 561_WT_peak_5781 chr5 66462150 66462440 + 48 NA exon (NM_015183, exon 28 of 28) exon (NM_015183, exon 28 of 28) 30322 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 561_WT_peak_46 chr1 8998570 8998771 + 48 NA Intergenic LTR77|LTR|ERV1 -7223 NM_001270500 765 Hs.100322 NM_001215 HPRD:00264 CA6 CA-VI|GUSTIN carbonic anhydrase VI protein-coding 561_WT_peak_3259 chr17 56065379 56065549 + 48 NA exon (NM_007146, exon 1 of 6) exon (NM_007146, exon 1 of 6) 151 NM_007146 7716 Hs.463569 NM_007146 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 561_WT_peak_7178 chr8 144623436 144623615 + 48 NA promoter-TSS (NM_015117) promoter-TSS (NM_015117) 95 NM_015117 23144 Hs.521915 NM_015117 HPRD:15697 ZC3H3 ZC3HDC3 zinc finger CCCH-type containing 3 protein-coding 561_WT_peak_4842 chr22 20923596 20923796 + 48 NA intron (NM_001293234, intron 8 of 16) intron (NM_001293234, intron 8 of 16) 61361 NM_001293237 51586 Hs.517421 NM_015889 HPRD:12117 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 561_WT_peak_3062 chr17 18315836 18316050 + 48 NA non-coding (NR_104343, exon 1 of 2) non-coding (NR_104343, exon 1 of 2) 1470 NR_104343 400579 Hs.375092 NR_104343 HPRD:13421 FLJ35934 - FLJ35934 ncRNA 561_WT_peak_4015 chr2 30560059 30560302 + 48 NA Intergenic Intergenic -9332 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 561_WT_peak_2625 chr15 94772826 94773161 + 48 NA Intergenic Intergenic -68437 NM_001159643 55784 Hs.33368 NM_018349 HPRD:07738 MCTP2 - multiple C2 domains, transmembrane 2 protein-coding 561_WT_peak_4121 chr2 68993649 68993921 + 48 NA intron (NM_001007231, intron 1 of 10) intron (NM_001007231, intron 1 of 10) -8148 NM_014882 9938 Hs.531807 NM_014882 HPRD:09805 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 561_WT_peak_5621 chr4 153021942 153022096 + 48 NA promoter-TSS (NR_121627) promoter-TSS (NR_121627) 49 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LOC100996286 - uncharacterized LOC100996286 ncRNA 561_WT_peak_1057 chr10 75716418 75716626 + 48 NA Intergenic Intergenic -33987 NM_001001791 414236 Hs.585453 NM_001001791 HPRD:16580 C10orf55 bA417O11.3 chromosome 10 open reading frame 55 protein-coding 561_WT_peak_4764 chr21 32725205 32725588 + 48 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 205894 NM_003253 7074 Hs.517228 NM_003253 HPRD:02820 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 561_WT_peak_4084 chr2 61244846 61245047 + 48 NA exon (NM_002618, exon 1 of 4) exon (NM_002618, exon 1 of 4) 134 NM_002618 5194 Hs.161377 NM_002618 HPRD:03475 PEX13 NALD|PBD11A|PBD11B|ZWS peroxisomal biogenesis factor 13 protein-coding 561_WT_peak_5148 chr3 69133927 69134167 + 48 NA promoter-TSS (NM_006407) promoter-TSS (NM_006407) -43 NM_006407 10550 Hs.518060 NM_006407 HPRD:09303 ARL6IP5 DERP11|GTRAP3-18|JWA|PRAF3|addicsin|hp22|jmx ADP-ribosylation factor-like 6 interacting protein 5 protein-coding 561_WT_peak_3970 chr2 12997140 12997343 + 48 NA Intergenic Intergenic 119748 NR_036072 100422986 NR_036072 MIR3125 - microRNA 3125 ncRNA 561_WT_peak_6729 chr7 75947943 75948113 + 48 NA Intergenic Intergenic 16153 NM_001540 3315 Hs.520973 NM_001540 HPRD:09076 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock 27kDa protein 1 protein-coding 561_WT_peak_5566 chr4 103266792 103266892 + 48 NA promoter-TSS (NM_001135147) promoter-TSS (NM_001135147) -187 NM_001135146 64116 Hs.288034 NM_022154 HPRD:12286 SLC39A8 BIGM103|LZT-Hs6|ZIP8 solute carrier family 39 (zinc transporter), member 8 protein-coding 561_WT_peak_1404 chr11 72524577 72524950 + 48 NA promoter-TSS (NM_033388) promoter-TSS (NM_033388) -688 NM_033388 89849 Hs.653186 NM_033388 HPRD:10959 ATG16L2 ATG16B|WDR80 autophagy related 16-like 2 (S. cerevisiae) protein-coding 561_WT_peak_7390 chr9 112910765 112910963 + 48 NA intron (NM_001004065, intron 2 of 3) intron (NM_001004065, intron 2 of 3) 23083 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 561_WT_peak_4779 chr21 35320419 35320847 + 48 NA promoter-TSS (NM_001288961) promoter-TSS (NM_001288961) -597 NM_001288961 400863 Hs.729814 NM_207472 LOC400863 - uncharactered LOC400863 protein-coding 561_WT_peak_4788 chr21 37432928 37433107 + 48 NA promoter-TSS (NM_001007261) promoter-TSS (NM_001007261) 99 NR_040087 54093 Hs.606200 NM_017438 HPRD:10743 SETD4 C21orf18|C21orf27 SET domain containing 4 protein-coding 561_WT_peak_2073 chr13 77566294 77566534 + 48 NA intron (NM_006493, intron 1 of 3) CpG 355 NM_006493 1203 Hs.30213 NM_006493 CLN5 NCL ceroid-lipofuscinosis, neuronal 5 protein-coding 561_WT_peak_6222 chr6 27804949 27805153 + 48 NA TTS (NM_003510) TTS (NM_003510) 1066 NM_003510 8330 Hs.734717 NM_003510 HPRD:09100 HIST1H2AK H2A/d|H2AFD histone cluster 1, H2ak protein-coding 561_WT_peak_938 chr10 31607487 31607773 + 48 NA promoter-TSS (NM_001174096) promoter-TSS (NM_001174096) 394 NR_024284 220930 Hs.372654 NR_024284 ZEB1-AS1 - ZEB1 antisense RNA 1 ncRNA 561_WT_peak_2233 chr14 58766045 58766235 + 48 NA intron (NM_002892, intron 1 of 23) CpG 918 NM_023000 5926 Hs.161000 NM_002892 HPRD:01575 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT rich interactive domain 4A (RBP1-like) protein-coding 561_WT_peak_5317 chr3 169684474 169684808 + 48 NA promoter-TSS (NR_027622) promoter-TSS (NR_027622) 61 NM_003262 7095 Hs.744859 NM_003262 HPRD:03706 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog (S. cerevisiae) protein-coding 561_WT_peak_2277 chr14 72943535 72943758 + 48 NA intron (NM_001204420, intron 11 of 15) intron (NM_001204420, intron 11 of 15) -39882 NR_106994 102465832 NR_106994 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 561_WT_peak_1088 chr10 90585149 90585318 + 48 NA intron (NM_144590, intron 4 of 5) intron (NM_144590, intron 4 of 5) 22746 NM_001128215 340654 Hs.55118 NM_001128215 ENSG00000173239 LIPM LIPL3|bA304I5.1 lipase, family member M protein-coding 561_WT_peak_1640 chr12 29534380 29534466 + 48 NA promoter-TSS (NM_016570) promoter-TSS (NM_016570) -280 NM_016570 51290 Hs.339453 NM_016570 ERGIC2 Erv41|PTX1|cd002 ERGIC and golgi 2 protein-coding 561_WT_peak_2426 chr15 36871968 36872357 + 48 NA exon (NM_001130010, exon 1 of 12) exon (NM_001130010, exon 1 of 12) 358 NM_001130010 84529 Hs.48348 NM_032499 HPRD:13650 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 561_WT_peak_1892 chr12 121662541 121662705 + 48 NA intron (NR_046372, intron 6 of 12) intron (NR_046372, intron 6 of 12) 14959 NM_002560 5025 Hs.321709 NM_002560 HPRD:09017 P2RX4 P2X4|P2X4R purinergic receptor P2X, ligand-gated ion channel, 4 protein-coding 561_WT_peak_3204 chr17 43225954 43226422 + 48 NA 5' UTR (NM_006460, exon 1 of 1) 5' UTR (NM_006460, exon 1 of 1) 1504 NM_006460 10614 Hs.586945 NM_006460 HPRD:09544 HEXIM1 CLP1|EDG1|HIS1|MAQ1 hexamethylene bis-acetamide inducible 1 protein-coding 561_WT_peak_2251 chr14 62129276 62129507 + 48 NA Intergenic Intergenic -32728 NM_181054 3091 Hs.597216 NM_001530 HPRD:04517 HIF1A HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) protein-coding 561_WT_peak_458 chr1 147089966 147090136 + 48 NA intron (NM_004326, intron 7 of 9) intron (NM_004326, intron 7 of 9) 52583 NM_016361 51205 Hs.562154 NM_016361 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 561_WT_peak_5608 chr4 144434891 144435064 + 48 NA non-coding (NR_104027, exon 2 of 2) non-coding (NR_104027, exon 2 of 2) 361 NM_003601 8467 Hs.558422 NM_003601 HPRD:04538 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 561_WT_peak_516 chr1 150535351 150535519 + 48 NA intron (NR_104133, intron 3 of 3) intron (NR_104133, intron 3 of 3) 11030 NR_036211 100422997 NR_036211 miRBase:MI0015856 MIR4257 - microRNA 4257 ncRNA 561_WT_peak_271 chr1 66296141 66296339 + 48 NA intron (NM_002600, intron 1 of 16) L1MC3|LINE|L1 37384 NM_002600 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 561_WT_peak_4980 chr22 50986883 50987270 + 48 NA exon (NM_138433, exon 1 of 1) exon (NM_138433, exon 1 of 1) 614 NM_138433 113730 Hs.137007 NM_138433 HPRD:14453 KLHDC7B - kelch domain containing 7B protein-coding 561_WT_peak_1364 chr11 65420225 65420402 + 48 NA TTS (NM_001243984) TTS (NM_001243984) 3650 NR_039709 100616284 NR_039709 MIR4489 - microRNA 4489 ncRNA 561_WT_peak_2105 chr13 113862873 113863067 + 48 NA promoter-TSS (NM_018386) promoter-TSS (NM_018386) -8 NM_001258213 55795 Hs.508769 NM_018386 HPRD:07749 PCID2 F10 PCI domain containing 2 protein-coding 561_WT_peak_7142 chr8 126103826 126104038 + 48 NA promoter-TSS (NM_173685) promoter-TSS (NM_173685) 129 NM_014846 9897 Hs.270043 NM_014846 HPRD:13786 KIAA0196 RTSC|SPG8 KIAA0196 protein-coding 561_WT_peak_5779 chr5 66136915 66137024 + 48 NA intron (NM_015183, intron 1 of 27) MIRb|SINE|MIR 12365 NM_015183 375449 Hs.595458 NM_015183 HPRD:14195 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 561_WT_peak_252 chr1 55680758 55680989 + 48 NA promoter-TSS (NR_038320) promoter-TSS (NR_038320) 166 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 561_WT_peak_6943 chr8 22461961 22462516 + 48 NA promoter-TSS (NR_033902) promoter-TSS (NR_033902) 93 NR_033902 57805 Hs.744848 NM_021174 HPRD:09159 CCAR2 DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC cell cycle and apoptosis regulator 2 protein-coding 561_WT_peak_4501 chr2 234475099 234475280 + 48 NA promoter-TSS (NM_018218) promoter-TSS (NM_018218) -953 NM_018218 55230 Hs.96513 NM_018218 HPRD:07166 USP40 - ubiquitin specific peptidase 40 protein-coding 561_WT_peak_1670 chr12 47610171 47610373 + 48 NA promoter-TSS (NR_026544) promoter-TSS (NR_026544) -46 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 561_WT_peak_1556 chr12 4429771 4430053 + 48 NA promoter-TSS (NM_020375) promoter-TSS (NM_020375) -447 NM_020375 57103 Hs.504545 NM_020375 C12orf5 FR2BP|TIGAR chromosome 12 open reading frame 5 protein-coding 561_WT_peak_128 chr1 27023458 27023733 + 48 NA exon (NM_139135, exon 1 of 20) exon (NM_139135, exon 1 of 20) 1073 NM_139135 8289 Hs.468972 NM_006015 HPRD:04319 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT rich interactive domain 1A (SWI-like) protein-coding 561_WT_peak_4972 chr22 50629779 50629994 + 48 NA intron (NM_025204, intron 1 of 9) intron (NM_025204, intron 1 of 9) 5526 NM_025204 80305 Hs.517731 NM_025204 HPRD:11450 TRABD LP6054|PP2447 TraB domain containing protein-coding 561_WT_peak_1368 chr11 65625001 65625185 + 48 NA intron (NM_005507, intron 1 of 3) CpG 711 NM_005507 1072 Hs.170622 NM_005507 HPRD:03261 CFL1 CFL|HEL-S-15 cofilin 1 (non-muscle) protein-coding 561_WT_peak_2582 chr15 83735638 83735988 + 48 NA promoter-TSS (NR_039740) promoter-TSS (NR_039740) -274 NR_039740 100616404 NR_039740 miRBase:MI0016881 MIR4515 - microRNA 4515 ncRNA 561_WT_peak_713 chr1 208042587 208042719 + 48 NA Intergenic CpG 42030 NM_001025109 947 Hs.374990 NM_001773 HPRD:00790 CD34 - CD34 molecule protein-coding 561_WT_peak_7595 chrX 101187160 101187358 + 48 NA promoter-TSS (NM_001282401) promoter-TSS (NM_001282401) -220 NM_001282401 84460 Hs.496512 NM_001011657 HPRD:10029 ZMAT1 - zinc finger, matrin-type 1 protein-coding 561_WT_peak_1530 chr11 130184982 130185170 + 47 NA promoter-TSS (NM_014155) promoter-TSS (NM_014155) -469 NM_001301098 29068 Hs.721470 NM_014155 HPRD:13692 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 561_WT_peak_1139 chr10 105677685 105677771 + 47 NA intron (NM_024928, intron 1 of 9) CpG 317 NM_024928 79991 Hs.62314 NM_024928 OBFC1 AAF-44|AAF44|RPA-32|STN1|bA541N10.2 oligonucleotide/oligosaccharide-binding fold containing 1 protein-coding 561_WT_peak_5338 chr3 183353568 183353789 + 47 NA intron (NM_017644, intron 1 of 7) CpG 267 NM_017644 54800 Hs.407709 NM_017644 HPRD:16838 KLHL24 DRE1|KRIP6 kelch-like family member 24 protein-coding 561_WT_peak_259 chr1 61784716 61784863 + 47 NA intron (NM_001145511, intron 3 of 10) intron (NM_001145511, intron 3 of 10) -65599 NR_104180 645030 Hs.632410 NR_104180 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 561_WT_peak_2778 chr16 30389853 30389928 + 47 NA TTS (NM_013292) TTS (NM_013292) 255 NM_001214907 197407 Hs.513501 NM_152652 HPRD:15836 ZNF48 ZNF553 zinc finger protein 48 protein-coding 561_WT_peak_5886 chr5 118610458 118610630 + 47 NA intron (NM_001077654, intron 1 of 1) intron (NM_001077654, intron 1 of 1) 6157 NM_001286815 25816 Hs.618488 NM_014350 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 tumor necrosis factor, alpha-induced protein 8 protein-coding 561_WT_peak_4552 chr20 4018956 4019171 + 47 NA Intergenic Intergenic -22847 NM_001134338 11237 Hs.589884 NM_007219 HPRD:10198 RNF24 G1L ring finger protein 24 protein-coding 561_WT_peak_48 chr1 9480963 9481211 + 47 NA Intergenic Intergenic 7888 NR_104623 100506022 Hs.131775 NR_104622 LOC100506022 - uncharacterized LOC100506022 ncRNA 561_WT_peak_7177 chr8 144373644 144373832 + 47 NA 5' UTR (NM_030895, exon 1 of 3) 5' UTR (NM_030895, exon 1 of 3) 179 NM_030895 79943 Hs.512740 NM_030895 ZNF696 - zinc finger protein 696 protein-coding 561_WT_peak_2893 chr16 70554716 70554900 + 47 NA intron (NM_015386, intron 1 of 18) MIRb|SINE|MIR 2649 NM_015386 25839 Hs.208680 NM_015386 HPRD:08444 COG4 CDG2J|COD1 component of oligomeric golgi complex 4 protein-coding 561_WT_peak_2152 chr14 24780275 24780494 + 47 NA promoter-TSS (NM_001143919) promoter-TSS (NM_001143919) 192 NM_014430 27141 Hs.642693 NM_014430 HPRD:11981 CIDEB - cell death-inducing DFFA-like effector b protein-coding 561_WT_peak_2318 chr14 90085186 90085357 + 47 NA intron (NM_001085471, intron 1 of 6) intron (NM_001085471, intron 1 of 6) 223 NM_001085471 1112 Hs.434286 NM_005197 HPRD:07533 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 561_WT_peak_310 chr1 89356994 89357501 + 47 NA promoter-TSS (NM_001514) promoter-TSS (NM_001514) 54 NM_001514 2959 Hs.481852 NM_001514 HPRD:08928 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 561_WT_peak_686 chr1 203651933 203652129 + 47 NA 5' UTR (NM_001001396, exon 2 of 22) 5' UTR (NM_001001396, exon 2 of 22) -46678 NR_003019 677843 Hs.676135 NR_003019 SNORA77 ACA63 small nucleolar RNA, H/ACA box 77 snoRNA 561_WT_peak_7454 chr9 132251042 132251249 + 47 NA non-coding (NR_038955, exon 1 of 5) non-coding (NR_038955, exon 1 of 5) 206 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 561_WT_peak_1958 chr13 25283353 25283383 + 47 NA intron (NM_001185085, intron 17 of 22) Zaphod3|DNA|hAT-Tip100 28819 NM_001185085 479 Hs.147111 NM_001676 HPRD:01667 ATP12A ATP1AL1 ATPase, H+/K+ transporting, nongastric, alpha polypeptide protein-coding 561_WT_peak_6890 chr7 148823773 148823945 + 47 NA promoter-TSS (NM_001001661) promoter-TSS (NM_001001661) 351 NM_020781 57541 Hs.632032 NM_020781 HPRD:18336 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 561_WT_peak_6761 chr7 98476334 98476600 + 47 NA intron (NM_001244580, intron 1 of 71) CpG 354 NM_003496 8295 Hs.203952 NM_003496 HPRD:04310 TRRAP PAF350/400|PAF400|STAF40|TR-AP|Tra1 transformation/transcription domain-associated protein protein-coding 561_WT_peak_2594 chr15 89438474 89438729 + 47 NA intron (NM_178232, intron 1 of 4) CpG 169 NM_178232 145864 Hs.447530 NM_178232 HPRD:13629 HAPLN3 EXLD1|HsT19883 hyaluronan and proteoglycan link protein 3 protein-coding 561_WT_peak_6720-2 chr7 75039825 75039840 + 47 NA intron (NR_104013, intron 1 of 7) CpG 227 NR_033322 155400 Hs.436034 NM_001039575 NSUN5P1 NSUN5B|WBSCR20B NOP2/Sun domain family, member 5 pseudogene 1 pseudo 561_WT_peak_6177 chr6 26522085 26522386 + 47 NA non-coding (NR_026790, exon 1 of 1) non-coding (NR_026790, exon 1 of 1) 301 NR_026790 493812 Hs.272939 NR_026790 ENSG00000228223 HCG11 bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 561_WT_peak_3410 chr18 657947 658181 + 47 NA exon (NM_001012716, exon 1 of 2) intron (NM_001071, intron 1 of 6) 276 NM_001012716 494514 Hs.274959 NM_001012716 HPRD:18668 TYMSOS C18orf56 TYMS opposite strand protein-coding 561_WT_peak_635 chr1 179051201 179051407 + 47 NA exon (NM_022371, exon 1 of 6) exon (NM_022371, exon 1 of 6) 192 NM_022371 64222 Hs.584957 NM_022371 TOR3A ADIR|ADIR2 torsin family 3, member A protein-coding 561_WT_peak_5960 chr5 140070766 140071048 + 47 NA promoter-TSS (NM_012208) promoter-TSS (NM_012208) -104 NM_001278731 23438 Hs.432560 NM_012208 HPRD:02871 HARS2 HARSL|HARSR|HO3|PRLTS2 histidyl-tRNA synthetase 2, mitochondrial protein-coding 561_WT_peak_3486 chr18 33709494 33709787 + 47 NA promoter-TSS (NM_001242875) promoter-TSS (NM_001242875) -197 NM_001242879 55250 Hs.8739 NM_018255 HPRD:15443 ELP2 SHINC-2|STATIP1|StIP elongator acetyltransferase complex subunit 2 protein-coding 561_WT_peak_3013 chr17 7211092 7211277 + 47 NA promoter-TSS (NM_001143762) promoter-TSS (NM_001143762) -104 NM_001143761 1984 Hs.534314 NM_001970 HPRD:02555 EIF5A EIF-5A|EIF5A1|eIF5AI eukaryotic translation initiation factor 5A protein-coding 561_WT_peak_7586 chrX 77772750 77772926 + 47 NA Intergenic Intergenic 141987 NM_152694 203430 Hs.134873 NM_152694 HPRD:06756 ZCCHC5 Mar3|Mart3|ZHC5 zinc finger, CCHC domain containing 5 protein-coding 561_WT_peak_7298 chr9 74383236 74383672 + 47 NA 5' UTR (NM_001135820, exon 1 of 23) 5' UTR (NM_001135820, exon 1 of 23) 346 NM_013390 23670 Hs.494146 NM_013390 HPRD:09317 TMEM2 - transmembrane protein 2 protein-coding 561_WT_peak_7368 chr9 100159625 100159824 + 47 NA promoter-TSS (NR_026847) promoter-TSS (NR_026847) -751 NR_026847 286359 Hs.132262 NM_182600 LOC286359 - uncharacterized LOC286359 ncRNA 561_WT_peak_1830 chr12 104350953 104351135 + 47 NA promoter-TSS (NM_001135570) promoter-TSS (NM_001135570) -51 NM_001135570 728568 Hs.42547 NM_001135570 ENSG00000204954 C12orf73 - chromosome 12 open reading frame 73 protein-coding 561_WT_peak_733 chr1 220267602 220267776 + 47 NA exon (NM_018060, exon 1 of 23) exon (NM_018060, exon 1 of 23) 234 NM_018060 55699 Hs.262823 NM_018060 HPRD:13334 IARS2 ILERS isoleucyl-tRNA synthetase 2, mitochondrial protein-coding 561_WT_peak_5532 chr4 84205436 84205681 + 47 NA intron (NM_015697, intron 1 of 6) CpG 509 NM_015697 27235 Hs.144304 NM_015697 HPRD:13062 COQ2 CL640|COQ10D1|MSA1 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase protein-coding 561_WT_peak_2264 chr14 68283094 68283268 + 47 NA intron (NM_015346, intron 1 of 41) intron (NM_015346, intron 1 of 41) 125 NM_015346 23503 Hs.98041 NM_015346 HPRD:15734 ZFYVE26 FYVE-CENT|SPG15 zinc finger, FYVE domain containing 26 protein-coding 561_WT_peak_6720 chr7 75039372 75039763 + 47 NA promoter-TSS (NR_033322) promoter-TSS (NR_033322) -38 NR_104013 155400 Hs.436034 NM_001039575 NSUN5P1 NSUN5B|WBSCR20B NOP2/Sun domain family, member 5 pseudogene 1 pseudo 561_WT_peak_3341 chr17 73267468 73267670 + 47 NA promoter-TSS (NM_020679) promoter-TSS (NM_020679) 189 NR_036520 100287042 Hs.514470 NR_036520 ENSG00000263843 LOC100287042 - uncharacterized LOC100287042 ncRNA 561_WT_peak_274 chr1 67390809 67390979 + 47 NA promoter-TSS (NM_207014) promoter-TSS (NM_207014) 316 NM_001146112 57708 Hs.605432 NM_020948 HPRD:11362 MIER1 ER1|MI-ER1 mesoderm induction early response 1, transcriptional regulator protein-coding 561_WT_peak_2403 chr15 22462119 22462346 + 47 NA Intergenic Intergenic 48770 NR_028067 390539 Hs.666555 NR_028067 ENSG00000259435 OR4N3P OR15-2 olfactory receptor, family 4, subfamily N, member 3 pseudogene pseudo 561_WT_peak_2096 chr13 111268633 111268701 + 47 NA intron (NM_018210, intron 1 of 9) CpG 736 NM_018210 55739 Hs.408324 NM_018210 HPRD:07698 CARKD LP3298 carbohydrate kinase domain containing protein-coding 561_WT_peak_7590 chrX 100306575 100306990 + 47 NA 5' UTR (NM_001167972, exon 1 of 13) 5' UTR (NM_001167972, exon 1 of 13) 323 NM_001167971 79979 Hs.496501 NM_024917 HPRD:06520 TRMT2B CXorf34|dJ341D10.3 tRNA methyltransferase 2 homolog B (S. cerevisiae) protein-coding 561_WT_peak_1172 chr10 135121913 135122358 + 47 NA promoter-TSS (NM_145806) promoter-TSS (NM_145806) -288 NM_145806 118472 Hs.422113 NM_145806 HPRD:15812 ZNF511 - zinc finger protein 511 protein-coding 561_WT_peak_4025 chr2 37311206 37311378 + 47 NA promoter-TSS (NM_174931) promoter-TSS (NM_174931) 193 NM_019024 54497 Hs.744084 NM_019024 HPRD:11145 HEATR5B - HEAT repeat containing 5B protein-coding 561_WT_peak_1742 chr12 58165663 58165857 + 47 NA promoter-TSS (NM_015433) promoter-TSS (NM_015433) 154 NM_005371 4234 Hs.42957 NM_005371 HPRD:06834 METTL1 C12orf1|TRM8|TRMT8|YDL201w methyltransferase like 1 protein-coding 561_WT_peak_3284 chr17 58498740 58498953 + 47 NA Intergenic CpG -1019 NM_181707 124773 Hs.129312 NM_181707 HPRD:14029 C17orf64 - chromosome 17 open reading frame 64 protein-coding 561_WT_peak_7550 chrX 52963909 52964113 + 47 NA Intergenic CpG 21618 NM_001099684 727866 Hs.6451 NM_001099684 ENSG00000179304 FAM156B TMEM29B family with sequence similarity 156, member B protein-coding 561_WT_peak_6972 chr8 30601546 30601798 + 47 NA promoter-TSS (NM_001282199) promoter-TSS (NM_001282199) -10 NM_001282199 7993 Hs.153678 NM_005671 UBXN8 D8S2298E|REP8|UBXD6 UBX domain protein 8 protein-coding 561_WT_peak_2081 chr13 92001325 92001631 + 47 NA intron (NR_027349, intron 1 of 3) intron (NR_027349, intron 1 of 3) -1381 NR_029487 406952 NR_029487 miRBase:MI0000071 MIR17 MIR17-5p|MIR91|MIRN17|MIRN91|hsa-mir-17|miR-17|miR17-3p|miRNA17|miRNA91 microRNA 17 ncRNA 561_WT_peak_2557 chr15 75642342 75642564 + 47 NA intron (NM_001256552, intron 2 of 9) intron (NM_001256552, intron 2 of 9) 2493 NR_046311 79661 Hs.512732 NM_024608 HPRD:12314 NEIL1 FPG1|NEI1|hFPG1 nei endonuclease VIII-like 1 (E. coli) protein-coding 561_WT_peak_6487 chr6 137144009 137144190 + 47 NA intron (NM_000288, intron 1 of 9) CpG 397 NM_000288 5191 Hs.280932 NM_000288 HPRD:03454 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 561_WT_peak_4020 chr2 32582326 32582703 + 46 NA exon (NM_016252, exon 1 of 74) exon (NM_016252, exon 1 of 74) 418 NM_016252 57448 Hs.150107 NM_016252 HPRD:05731 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 561_WT_peak_3286 chr17 59216664 59216850 + 46 NA intron (NM_017679, intron 22 of 23) intron (NM_017679, intron 22 of 23) 260210 NR_125749 103689912 Hs.410998 NR_125749 TBX2-AS1 - TBX2 antisense RNA 1 ncRNA 561_WT_peak_6519 chr6 151773340 151773597 + 46 NA promoter-TSS (NM_017909) promoter-TSS (NM_017909) 75 NM_001286562 79624 Hs.15929 NM_024573 HPRD:09854 C6orf211 - chromosome 6 open reading frame 211 protein-coding 561_WT_peak_2349 chr14 96857569 96857971 + 46 NA promoter-TSS (NM_152327) promoter-TSS (NM_152327) -678 NM_152327 122481 Hs.667462 NM_152327 HPRD:10640 AK7 AK 7 adenylate kinase 7 protein-coding 561_WT_peak_6955 chr8 28269469 28269957 + 46 NA Intergenic CpG -25736 NM_018660 55893 Hs.435535 NM_018660 HPRD:11711 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 561_WT_peak_1885 chr12 120933872 120934257 + 46 NA promoter-TSS (NR_038854) promoter-TSS (NR_038854) 205 NM_001037495 8655 Hs.5120 NM_003746 HPRD:03334 DYNLL1 DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1 dynein, light chain, LC8-type 1 protein-coding 561_WT_peak_6947 chr8 23087938 23088062 + 46 NA non-coding (NR_033928, exon 3 of 3) non-coding (NR_033928, exon 3 of 3) 5266 NR_033928 389641 Hs.591835 NR_033928 ENSG00000246582 LOC389641 - uncharacterized LOC389641 ncRNA 561_WT_peak_1910 chr12 123718011 123718212 + 46 NA promoter-TSS (NM_001143905) promoter-TSS (NM_001143905) 83 NM_001194995 91574 Hs.319128 NM_152269 HPRD:08791 C12orf65 COXPD7|SPG55 chromosome 12 open reading frame 65 protein-coding 561_WT_peak_1499 chr11 118187447 118187847 + 46 NA TTS (NM_000733) TTS (NM_000733) 12352 NM_000733 916 Hs.3003 NM_000733 HPRD:08923 CD3E IMD18|T3E|TCRE CD3e molecule, epsilon (CD3-TCR complex) protein-coding 561_WT_peak_2777 chr16 30205387 30205701 + 46 NA promoter-TSS (NM_001031827) promoter-TSS (NM_001031827) 83 NM_001039182 654483 Hs.647333 NM_001039182 ENSG00000169627 BOLA2B BOLA2 bolA family member 2B protein-coding 561_WT_peak_7578 chrX 71401169 71401554 + 46 NA promoter-TSS (NM_001170747) promoter-TSS (NM_001170747) -165 NM_001170747 5303 Hs.655623 NM_006223 HPRD:02219 PIN4 EPVH|PAR14|PAR17 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) protein-coding 561_WT_peak_7613 chrX 133305643 133305884 + 46 NA Intergenic CpG -1455 NR_029523 406899 NR_029523 miRBase:MI0000113 MIR106A MIRN106A|mir-106 microRNA 106a ncRNA 561_WT_peak_6529 chr6 157421616 157421620 + 46 NA intron (NM_020732, intron 6 of 19) intron (NM_020732, intron 6 of 19) -320753 NR_039676 100616154 NR_039676 miRBase:MI0016817 MIR4466 - microRNA 4466 ncRNA 561_WT_peak_4413 chr2 197024966 197025179 + 46 NA intron (NM_004226, intron 2 of 7) intron (NM_004226, intron 2 of 7) 11264 NM_004226 9262 Hs.88297 NM_004226 HPRD:05289 STK17B DRAK2 serine/threonine kinase 17b protein-coding 561_WT_peak_4868 chr22 29598817 29599068 + 46 NA Intergenic Intergenic -2959 NM_133455 129080 Hs.289106 NM_133455 HPRD:09936 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 561_WT_peak_6600 chr7 17301100 17301148 + 46 NA Intergenic Intergenic -37152 NM_001621 196 Hs.171189 NM_001621 HPRD:02596 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 561_WT_peak_6622 chr7 25164628 25164798 + 46 NA intron (NM_018947, intron 1 of 2) CpG 267 NM_018947 54205 Hs.437060 NM_018947 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 561_WT_peak_5749 chr5 54040234 54040450 + 46 NA promoter-TSS (NR_104658) promoter-TSS (NR_104658) -256 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 561_WT_peak_2959 chr16 89790095 89790274 + 46 NA intron (NR_110126, intron 4 of 10) intron (NR_110126, intron 4 of 10) 2232 NM_001113525 92822 Hs.290154 NM_152287 HPRD:12235 ZNF276 CENP-Z|CENPZ|ZADT|ZFP276|ZNF477 zinc finger protein 276 protein-coding 561_WT_peak_1094 chr10 93668626 93668837 + 46 NA 5' UTR (NM_152429, exon 2 of 2) 5' UTR (NM_152429, exon 2 of 2) 527 NM_152429 143282 Hs.466120 NM_152429 HPRD:08499 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 561_WT_peak_4867 chr22 29305466 29305531 + 46 NA intron (NM_001206998, intron 1 of 8) intron (NM_001206998, intron 1 of 8) -7879 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 561_WT_peak_7514 chrX 24043669 24043939 + 46 NA intron (NM_030624, intron 1 of 3) CpG-27799 1499 NM_030624 80311 Hs.495854 NM_030624 ENSG00000174010 KLHL15 HEL-S-305 kelch-like family member 15 protein-coding 561_WT_peak_4948 chr22 42466594 42466765 + 46 NA 5' UTR (NM_000262, exon 1 of 9) 5' UTR (NM_000262, exon 1 of 9) 167 NM_000262 4668 Hs.75372 NM_000262 HPRD:00076 NAGA D22S674|GALB N-acetylgalactosaminidase, alpha- protein-coding 561_WT_peak_588 chr1 161431815 161432165 + 46 NA Intergenic CpG -43215 NM_021642 2212 Hs.352642 NM_021642 HPRD:00906 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding 561_WT_peak_5967 chr5 141488852 141489178 + 46 NA intron (NM_030571, intron 1 of 7) intron (NM_030571, intron 1 of 7) 691 NM_030571 80762 Hs.9788 NM_030571 HPRD:14816 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 561_WT_peak_5924 chr5 134073629 134073732 + 46 NA promoter-TSS (NM_001745) promoter-TSS (NM_001745) -490 NM_001745 819 Hs.529846 NM_001745 HPRD:03073 CAMLG CAML calcium modulating ligand protein-coding 561_WT_peak_1843 chr12 108962650 108962855 + 46 NA 3' UTR (NM_014301, exon 6 of 6) 3' UTR (NM_014301, exon 6 of 6) 7513 NM_001301141 23479 Hs.615131 NM_014301 HPRD:14828 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 561_WT_peak_5511 chr4 78776011 78776092 + 46 NA Intergenic Intergenic -7754 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 561_WT_peak_921 chr10 27149214 27149343 + 46 NA intron (NM_001178116, intron 1 of 11) CpG 738 NM_001012750 10006 Hs.508148 NM_005470 HPRD:04336 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl-interactor 1 protein-coding 561_WT_peak_7020 chr8 53626465 53627030 + 46 NA 5' UTR (NM_014781, exon 1 of 24) 5' UTR (NM_014781, exon 1 of 24) 279 NM_001083617 9821 Hs.196102 NM_014781 HPRD:06019 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1-inducible coiled-coil 1 protein-coding 561_WT_peak_4088 chr2 61765997 61766176 + 46 NA promoter-TSS (NM_003400) promoter-TSS (NM_003400) -668 NM_003400 7514 Hs.370770 NM_003400 HPRD:03975 XPO1 CRM1|emb|exp1 exportin 1 protein-coding 561_WT_peak_4168 chr2 85632817 85632988 + 46 NA intron (NM_001256139, intron 1 of 9) intron (NM_001256139, intron 1 of 9) 4918 NM_001256140 822 Hs.516155 NM_001747 HPRD:01088 CAPG AFCP|HEL-S-66|MCP capping protein (actin filament), gelsolin-like protein-coding 561_WT_peak_7473 chr9 136202877 136203216 + 46 NA promoter-TSS (NM_006753) promoter-TSS (NM_006753) 1 NM_001278942 6838 Hs.274430 NM_006753 HPRD:01714 SURF6 RRP14 surfeit 6 protein-coding 561_WT_peak_5460 chr4 47533801 47533986 + 46 NA intron (NM_020453, intron 5 of 22) intron (NM_020453, intron 5 of 22) 46483 NM_020453 57205 Hs.437241 NM_020453 HPRD:16518 ATP10D ATPVD ATPase, class V, type 10D protein-coding 561_WT_peak_257 chr1 59369537 59369840 + 46 NA Intergenic CpG -116460 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 561_WT_peak_2723 chr16 21530400 21530629 + 46 NA non-coding (NR_002594, exon 1 of 1) non-coding (NR_002594, exon 1 of 1) 1251 NR_002594 387254 Hs.448808 NR_002594 SLC7A5P2 IMAA|MMAA solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 pseudo 561_WT_peak_2044 chr13 49107060 49107254 + 46 NA intron (NM_001286830, intron 1 of 13) CpG 235 NM_001268 1102 Hs.652712 NM_001268 HPRD:04631 RCBTB2 CHC1L|RLG regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 protein-coding 561_WT_peak_6668 chr7 45808238 45808932 + 46 NA promoter-TSS (NR_024271) promoter-TSS (NR_024271) 32 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPT7P2 SEPT13|SEPT7B septin 7 pseudogene 2 pseudo 561_WT_peak_5613 chr4 148721109 148721296 + 46 NA intron (NM_024605, intron 1 of 22) L1MDb|LINE|L1 17456 NR_039962 100616246 NR_039962 MIR4799 - microRNA 4799 ncRNA 561_WT_peak_5913 chr5 132298884 132299743 + 46 NA promoter-TSS (NM_014423) promoter-TSS (NM_014423) 41 NM_014423 27125 Hs.519313 NM_014423 HPRD:09187 AFF4 AF5Q31|MCEF AF4/FMR2 family, member 4 protein-coding 561_WT_peak_3299 chr17 62223274 62223555 + 46 NA promoter-TSS (NR_004380) promoter-TSS (NR_004380) -24 NR_004380 692227 NR_004380 ENSG00000199753 SNORD104 U104 small nucleolar RNA, C/D box 104 snoRNA 561_WT_peak_7325 chr9 88555544 88555853 + 46 NA promoter-TSS (NM_024635) promoter-TSS (NM_024635) -359 NM_024635 60560 Hs.436098 NM_024635 HPRD:11291 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 561_WT_peak_166 chr1 33767943 33768056 + 46 NA Intergenic MLT1K|LTR|ERVL-MaLR 18700 NM_001080438 127550 NM_001080438 ENSG00000184389 A3GALT2 A3GALT2P|IGBS3S alpha 1,3-galactosyltransferase 2 protein-coding 561_WT_peak_7355 chr9 97623426 97623607 + 46 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 51272 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 561_WT_peak_6267 chr6 30684706 30684879 + 46 NA intron (NM_014641, intron 1 of 14).4 intron (NM_014641, intron 1 of 14).4 666 NM_014641 9656 Hs.653495 NM_014641 HPRD:16252 MDC1 NFBD1 mediator of DNA-damage checkpoint 1 protein-coding 561_WT_peak_7488 chr9 140610775 140610953 + 46 NA intron (NM_001145527, intron 2 of 15) (TGG)n|Simple_repeat|Simple_repeat -46610 NR_024341 643210 Hs.721002 NM_001039765 EHMT1-IT1 - EHMT1 intronic transcript 1 ncRNA 561_WT_peak_1603 chr12 12538129 12538299 + 46 NA intron (NM_001300742, intron 2 of 3) intron (NM_001300742, intron 2 of 3) 28201 NM_058169 118426 Hs.720779 NM_058169 HPRD:17439 LOH12CR1 LOH1CR12 loss of heterozygosity, 12, chromosomal region 1 protein-coding 561_WT_peak_6857 chr7 135346951 135347463 + 46 NA promoter-TSS (NM_001130929) promoter-TSS (NM_001130929) -14 NM_001130929 647087 Hs.200022 NM_001130929 C7orf73 PL-5283 chromosome 7 open reading frame 73 protein-coding 561_WT_peak_1302 chr11 60609504 60609676 + 46 NA 5' UTR (NM_024098, exon 1 of 4) 5' UTR (NM_024098, exon 1 of 4) 161 NM_024098 79080 Hs.4253 NM_024098 HPRD:08322 CCDC86 - coiled-coil domain containing 86 protein-coding 561_WT_peak_3921 chr19 58220348 58220627 + 46 NA promoter-TSS (NM_001085384) promoter-TSS (NM_001085384) 92 NR_110974 7710 Hs.646378 NM_003444 HPRD:07245 ZNF154 pHZ-92 zinc finger protein 154 protein-coding 561_WT_peak_5954 chr5 139486866 139487289 + 46 NA non-coding (NR_102741, exon 1 of 4) non-coding (NR_102741, exon 1 of 4) 520 NR_102741 100505636 Hs.438871 NR_102739 ENSG00000245146 LINC01024 - long intergenic non-protein coding RNA 1024 ncRNA 561_WT_peak_4550 chr20 3748963 3749164 + 46 NA promoter-TSS (NM_001039140) promoter-TSS (NM_001039140) -28 NR_047675 54976 Hs.274422 NM_017874 HPRD:16648 C20orf27 - chromosome 20 open reading frame 27 protein-coding 561_WT_peak_2885 chr16 69599594 69599930 + 46 NA promoter-TSS (NM_006599) promoter-TSS (NM_006599) 9 NR_031719 100302119 NR_031719 miRBase:MI0007259 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 561_WT_peak_7367 chr9 100000518 100000872 + 46 NA promoter-TSS (NR_036529) promoter-TSS (NR_036529) -13 NR_036527 57653 Hs.435629 NR_036527 LOC100499484-C9ORF174 - LOC100499484-C9orf174 readthrough ncRNA 561_WT_peak_1203 chr11 9406229 9406424 + 46 NA exon (NM_006391, exon 1 of 25) exon (NM_006391, exon 1 of 25) 157 NM_006391 10527 Hs.744911 NM_006391 HPRD:09280 IPO7 Imp7|RANBP7 importin 7 protein-coding 561_WT_peak_3628 chr19 11593427 11593761 + 46 NA TTS (NM_138783) TTS (NM_138783) -1791 NM_001420 1995 Hs.1701 NM_001420 HPRD:16024 ELAVL3 HUC|HUCL|PLE21 ELAV like neuron-specific RNA binding protein 3 protein-coding 561_WT_peak_5340 chr3 183735704 183735874 + 46 NA promoter-TSS (NM_005688) promoter-TSS (NM_005688) -62 NM_001023587 10057 Hs.368563 NM_005688 HPRD:06898 ABCC5 ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 protein-coding 561_WT_peak_5505 chr4 77135220 77135448 + 46 NA promoter-TSS (NM_001204255) promoter-TSS (NM_001204255) 141 NM_001242936 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47, member E protein-coding 561_WT_peak_3692 chr19 19729170 19729435 + 46 NA intron (NR_038198, intron 1 of 7) CpG 423 NM_025245 80714 Hs.466257 NM_025245 HPRD:16287 PBX4 - pre-B-cell leukemia homeobox 4 protein-coding 561_WT_peak_2194 chr14 50320565 50320775 + 46 NA Intergenic Intergenic -1131 NM_004713 9147 Hs.655964 NM_004713 HPRD:08494 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 561_WT_peak_4442 chr2 202278990 202279064 + 46 NA intron (NM_015049, intron 2 of 15) intron (NM_015049, intron 2 of 15) 37292 NM_015049 66008 Hs.152774 NM_015049 HPRD:09547 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking protein, kinesin binding 2 protein-coding 561_WT_peak_3505 chr18 48494385 48494982 + 46 NA intron (NM_018696, intron 1 of 3) intron (NM_018696, intron 1 of 3) 296 NM_018696 55520 Hs.657360 NM_018696 HPRD:16275 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 561_WT_peak_5570 chr4 103940622 103940852 + 46 NA intron (NM_139173, intron 1 of 11) CpG 159 NR_047515 150159 Hs.666728 NM_139173 HPRD:11240 SLC9B1 NHA1|NHEDC1 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 protein-coding 561_WT_peak_476 chr1 148603991 148604179 + 46 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) 43238 NM_173638 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 561_WT_peak_5651 chr4 186124631 186124919 + 46 NA intron (NM_020827, intron 1 of 4) CpG 407 NM_020827 57587 Hs.535734 NM_020827 ENSG00000164323 CFAP97 KIAA1430|hmw cilia and flagella associated protein 97 protein-coding 561_WT_peak_3249 chr17 49107193 49107394 + 46 NA intron (NM_001251971, intron 2 of 26) intron (NM_001251971, intron 2 of 26) 17036 NM_001251971 9043 Hs.463439 NM_003971 HPRD:10398 SPAG9 CT89|HLC-6|HLC4|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 561_WT_peak_5368 chr3 196044895 196045222 + 46 NA promoter-TSS (NR_121665) promoter-TSS (NR_121665) 107 NM_152773 255758 Hs.733180 NM_152773 HPRD:14554 TCTEX1D2 - Tctex1 domain containing 2 protein-coding 561_WT_peak_4966 chr22 48494032 48494052 + 46 NA Intergenic Intergenic -176134 NR_036172 100422916 NR_036172 miRBase:MI0014250 MIR3201 - microRNA 3201 ncRNA 561_WT_peak_5184 chr3 101568418 101568632 + 46 NA exon (NM_031419, exon 1 of 12) exon (NM_031419, exon 1 of 12) 167 NM_031419 64332 Hs.319171 NM_031419 HPRD:09217 NFKBIZ IKBZ|INAP|MAIL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta protein-coding 561_WT_peak_1372 chr11 65686063 65686234 + 46 NA promoter-TSS (NM_006442) promoter-TSS (NM_006442) 383 NM_031450 83638 Hs.433573 NM_031450 HPRD:12553 C11orf68 BLES03|P5326 chromosome 11 open reading frame 68 protein-coding 561_WT_peak_2202 chr14 50529374 50529633 + 46 NA Intergenic Intergenic -22901 NR_102736 100506499 Hs.728904 NR_102736 LOC100506499 - uncharacterized LOC100506499 ncRNA 561_WT_peak_7529 chrX 47004222 47004405 + 46 NA promoter-TSS (NM_001204467) promoter-TSS (NM_001204467) 296 NM_019056 54539 Hs.521969 NM_019056 HPRD:02323 NDUFB11 CI-ESSS|ESSS|NP17.3|Np15|P17.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa protein-coding 561_WT_peak_1612 chr12 12878703 12878873 + 46 NA promoter-TSS (NM_001130415) promoter-TSS (NM_001130415) -63 NM_001130415 81575 Hs.23388 NM_030817 HPRD:13153 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 561_WT_peak_7540 chrX 48754766 48754971 + 46 NA promoter-TSS (NM_001167992) promoter-TSS (NM_001167992) -327 NM_001032382 10084 Hs.534384 NM_005710 HPRD:02354 PQBP1 MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS polyglutamine binding protein 1 protein-coding 561_WT_peak_1466 chr11 102431483 102431666 + 46 NA Intergenic L3b|LINE|CR1 -30096 NM_002423 4316 Hs.2256 NM_002423 HPRD:01525 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 (matrilysin, uterine) protein-coding 561_WT_peak_4227 chr2 98280802 98281042 + 46 NA promoter-TSS (NM_005735) promoter-TSS (NM_005735) -361 NM_005735 10120 Hs.98791 NM_005735 HPRD:05508 ACTR1B ARP1B|CTRN2|PC3 ARP1 actin-related protein 1 homolog B, centractin beta (yeast) protein-coding 561_WT_peak_4099 chr2 64263473 64263759 + 46 NA Intergenic Intergenic -17402 NM_016516 51542 Hs.48499 NM_016516 HPRD:10302 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L vacuolar protein sorting 54 homolog (S. cerevisiae) protein-coding 561_WT_peak_4185 chr2 87758521 87758703 + 46 NA intron (NR_024206, intron 1 of 1) intron (NR_024206, intron 1 of 1) 3638 NR_024206 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 561_WT_peak_5094 chr3 47830704 47830733 + 46 NA Intergenic Intergenic -7313 NM_003074 6599 Hs.476179 NM_003074 HPRD:03435 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 protein-coding 561_WT_peak_324 chr1 93049999 93050256 + 46 NA intron (NM_005665, intron 16 of 17) intron (NM_005665, intron 16 of 17) -97694 NM_005263 2672 Hs.73172 NM_005263 HPRD:07527 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcription repressor protein-coding 561_WT_peak_6077 chr6 2859273 2859440 + 45 NA intron (NR_033851, intron 1 of 1) intron (NR_033851, intron 1 of 1) -5015 NR_039788 100616285 NR_039788 miRBase:MI0017272 MIR4645 - microRNA 4645 ncRNA 561_WT_peak_5426 chr4 17812406 17812708 + 45 NA promoter-TSS (NM_017741) promoter-TSS (NM_017741) 121 NM_022346 64151 Hs.567567 NM_022346 HPRD:12097 NCAPG CAPG|CHCG|NY-MEL-3|YCG1 non-SMC condensin I complex, subunit G protein-coding 561_WT_peak_6912 chr7 155089653 155089823 + 45 NA intron (NM_198336, intron 1 of 5) CpG 252 NM_005542 3638 Hs.520819 NM_005542 HPRD:03633 INSIG1 CL-6|CL6 insulin induced gene 1 protein-coding 561_WT_peak_2967 chr17 1359043 1359140 + 45 NA intron (NM_016823, intron 1 of 2) CpG 470 NM_016823 1398 Hs.461896 NM_005206 HPRD:01267 CRK CRKII|p38 v-crk avian sarcoma virus CT10 oncogene homolog protein-coding 561_WT_peak_21 chr1 2231817 2232018 + 45 NA intron (NM_003036, intron 1 of 6) intron (NM_003036, intron 1 of 6) 52183 NR_024489 100129534 Hs.655313 NM_001127577 LOC100129534 - small nuclear ribonucleoprotein polypeptide N pseudogene pseudo 561_WT_peak_508 chr1 150208821 150209003 + 45 NA promoter-TSS (NM_001136478) promoter-TSS (NM_001136478) -408 NM_001280560 81611 Hs.656466 NM_030920 HPRD:16493 ANP32E LANP-L|LANPL acidic (leucine-rich) nuclear phosphoprotein 32 family, member E protein-coding 561_WT_peak_1644 chr12 31477994 31478227 + 45 NA non-coding (NR_026806, exon 1 of 1) non-coding (NR_026806, exon 1 of 1) 860 NR_026806 79857 Hs.534485 NM_024799 ENSG00000177340 FLJ13224 - uncharacterized LOC79857 ncRNA 561_WT_peak_403 chr1 117047216 117047473 + 45 NA Intergenic Intergenic 66371 NR_026665 965 Hs.34341 NM_001779 HPRD:01081 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 561_WT_peak_3474 chr18 29523484 29523715 + 45 NA promoter-TSS (NM_014939) promoter-TSS (NM_014939) -508 NM_014939 22878 Hs.202001 NM_014939 HPRD:10019 TRAPPC8 GSG1|HsT2706|KIAA1012|TRS85 trafficking protein particle complex 8 protein-coding 561_WT_peak_7485 chr9 139622625 139622838 + 45 NA promoter-TSS (NR_003672) promoter-TSS (NR_003672) -95 NR_003672 84973 Hs.495480 NR_003672 ENSG00000233016 SNHG7 NCRNA00061 small nucleolar RNA host gene 7 (non-protein coding) ncRNA 561_WT_peak_4970 chr22 50328695 50328865 + 45 NA Intergenic CpG 16502 NM_001284317 79174 Hs.211282 NM_024324 HPRD:08455 CRELD2 - cysteine-rich with EGF-like domains 2 protein-coding 561_WT_peak_1564 chr12 7047107 7047325 + 45 NA exon (NM_001940, exon 6 of 10) exon (NM_001940, exon 6 of 10) -5987 NM_138425 113246 Hs.405913 NM_138425 HPRD:13609 C12orf57 C10|GRCC10|TEMTYS chromosome 12 open reading frame 57 protein-coding 561_WT_peak_2326 chr14 90864018 90864304 + 45 NA intron (NM_006888, intron 1 of 5) CpG 834 NM_006888 801 Hs.282410 NM_006888 HPRD:00241 CALM1 CALML2|CAMI|CPVT4|DD132|PHKD|caM calmodulin 1 (phosphorylase kinase, delta) protein-coding 561_WT_peak_7413 chr9 123693736 123694154 + 45 NA Intergenic Intergenic -2494 NM_001190945 7185 Hs.531251 NM_005658 HPRD:03418 TRAF1 EBI6|MGC:10353 TNF receptor-associated factor 1 protein-coding 561_WT_peak_334 chr1 97187548 97187903 + 45 NA promoter-TSS (NR_125356) promoter-TSS (NR_125356) -469 NR_125356 58155 Hs.596061 NM_021190 HPRD:12233 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 561_WT_peak_5436 chr4 26321586 26321766 + 45 NA promoter-TSS (NM_015874) promoter-TSS (NM_015874) 344 NM_005349 3516 Hs.479396 NM_005349 HPRD:00920 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 561_WT_peak_5356 chr3 187495237 187495482 + 45 NA Intergenic Intergenic -31846 NM_001706 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 561_WT_peak_4961 chr22 45714696 45714919 + 45 NA intron (NM_001104595, intron 2 of 9) intron (NM_001104595, intron 2 of 9) 9022 NM_017911 55007 Hs.265018 NM_017911 HPRD:07936 FAM118A C22orf8 family with sequence similarity 118, member A protein-coding 561_WT_peak_4628 chr20 36156562 36156754 + 45 NA promoter-TSS (NM_001167821) promoter-TSS (NM_001167821) -325 NM_006698 10904 Hs.472651 NM_006698 HPRD:16552 BLCAP BC10 bladder cancer associated protein protein-coding 561_WT_peak_2067 chr13 60970979 60971473 + 45 NA promoter-TSS (NM_001146070) promoter-TSS (NM_001146070) -201 NM_001146070 81550 Hs.525061 NM_030794 HPRD:11625 TDRD3 - tudor domain containing 3 protein-coding 561_WT_peak_3688 chr19 19599945 19600327 + 45 NA intron (NM_001300946, intron 1 of 10) intron (NM_001300946, intron 1 of 10) 23987 NM_001300946 54815 Hs.118964 NM_017660 HPRD:11741 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 561_WT_peak_3258 chr17 55677586 55677766 + 45 NA TTS (NR_110807) TTS (NR_110807) 8097 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 561_WT_peak_268 chr1 65532640 65532858 + 45 NA Intergenic CpG -8558 NR_029516 406893 NR_029516 miRBase:MI0000103 MIR101-1 MIRN101-1 microRNA 101-1 ncRNA 561_WT_peak_4305 chr2 133036965 133037294 + 45 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -21587 NR_027020 554226 Hs.380689 NR_027019 ENSG00000163046 ANKRD30BL ANKRD30BP3|NCRNA00164 ankyrin repeat domain 30B-like pseudo 561_WT_peak_577 chr1 160510069 160510239 + 45 NA TTS (NM_001184879) TTS (NM_001184879) -17102 NM_052931 114836 Hs.492348 NM_052931 HPRD:05920 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 561_WT_peak_4075 chr2 55496021 55496293 + 45 NA 5' UTR (NM_001005369, exon 1 of 17) 5' UTR (NM_001005369, exon 1 of 17) 158 NM_001005369 4528 Hs.149894 NM_002453 HPRD:04792 MTIF2 - mitochondrial translational initiation factor 2 protein-coding 561_WT_peak_99 chr1 22778343 22778648 + 45 NA 5' UTR (NM_014870, exon 1 of 18) 5' UTR (NM_014870, exon 1 of 18) 151 NM_001083621 9923 Hs.418966 NM_014870 HPRD:11086 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 561_WT_peak_7165 chr8 134580852 134581027 + 45 NA intron (NM_173344, intron 1 of 9) intron (NM_173344, intron 1 of 9) 3244 NM_173344 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 561_WT_peak_2509 chr15 64386161 64386334 + 45 NA promoter-TSS (NM_001289108) promoter-TSS (NM_001289108) -40 NM_001289108 84191 Hs.439548 NM_032231 HPRD:08010 FAM96A - family with sequence similarity 96, member A protein-coding 561_WT_peak_4861 chr22 26132758 26132928 + 45 NA Intergenic Intergenic -5277 NM_032608 84700 Hs.417959 NM_032608 HPRD:09529 MYO18B - myosin XVIIIB protein-coding 561_WT_peak_504 chr1 149899525 149899832 + 45 NA TTS (NM_001145862) TTS (NM_001145862) 466 NM_005850 10262 Hs.516160 NM_005850 HPRD:12028 SF3B4 AFD1|Hsh49|SAP49|SF3b49 splicing factor 3b, subunit 4, 49kDa protein-coding 561_WT_peak_1177 chr11 207668 207873 + 45 NA promoter-TSS (NM_016526) promoter-TSS (NM_016526) 259 NM_021932 60626 Hs.592292 NM_021932 HPRD:12373 RIC8A RIC8 RIC8 guanine nucleotide exchange factor A protein-coding 561_WT_peak_2695 chr16 10972687 10972857 + 45 NA intron (NR_104444, intron 1 of 17) intron (NR_104444, intron 1 of 17) 1717 NM_001286403 4261 Hs.701991 NM_000246 HPRD:02475 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II, major histocompatibility complex, transactivator protein-coding 561_WT_peak_7241 chr9 33025434 33025669 + 45 NA intron (NM_001539, intron 1 of 8) CpG 342 NM_001539 3301 Hs.445203 NM_001539 HPRD:04159 DNAJA1 DJ-2|DjA1|HDJ2|HSDJ|HSJ2|HSPF4|NEDD7|hDJ-2 DnaJ (Hsp40) homolog, subfamily A, member 1 protein-coding 561_WT_peak_4844 chr22 21213493 21213643 + 45 NA promoter-TSS (NM_058004) promoter-TSS (NM_058004) 276 NM_004782 9342 Hs.108002 NM_004782 HPRD:11968 SNAP29 CEDNIK|SNAP-29 synaptosomal-associated protein, 29kDa protein-coding 561_WT_peak_359 chr1 109968467 109968535 + 45 NA intron (NM_001199774, intron 1 of 8) intron (NM_001199774, intron 1 of 8) 569 NM_001199772 5686 Hs.485246 NM_002790 HPRD:01464 PSMA5 PSC5|ZETA proteasome (prosome, macropain) subunit, alpha type, 5 protein-coding 561_WT_peak_2924 chr16 81041542 81041706 + 45 NA intron (NM_001270474, intron 1 of 9) AluSx1|SINE|Alu -1122 NM_020188 56942 Hs.55028 NM_020188 CMC2 2310061C15Rik|C16orf61 C-x(9)-C motif containing 2 protein-coding 561_WT_peak_1027 chr10 70715523 70715754 + 45 NA promoter-TSS (NM_004728) promoter-TSS (NM_004728) -241 NM_004728 9188 Hs.223141 NM_004728 HPRD:05895 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DEAD (Asp-Glu-Ala-Asp) box helicase 21 protein-coding 561_WT_peak_2897 chr16 71599022 71599276 + 45 NA promoter-TSS (NR_103851) promoter-TSS (NR_103851) 230 NR_103852 100132529 Hs.710296 NR_103851 ENSG00000260886 LOC100132529 - uncharacterized LOC100132529 ncRNA 561_WT_peak_4042 chr2 43036947 43037163 + 45 NA Intergenic CpG -17304 NM_012205 23498 Hs.368805 NM_012205 HPRD:05158 HAAO 3-HAO|HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 561_WT_peak_3988 chr2 25599851 25600057 + 45 NA TTS (NM_033148) TTS (NM_033148) -34495 NM_175630 1788 Hs.515840 NM_022552 HPRD:04141 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA (cytosine-5-)-methyltransferase 3 alpha protein-coding 561_WT_peak_4323 chr2 148055534 148055725 + 45 NA Intergenic Intergenic -546457 NM_001278580 92 Hs.470174 NM_001616 HPRD:00025 ACVR2A ACTRII|ACVR2 activin A receptor, type IIA protein-coding 561_WT_peak_2795 chr16 31190891 31190899 + 45 NA promoter-TSS (NM_004960) promoter-TSS (NM_004960) -536 NR_028388 2521 Hs.46894 NM_004960 HPRD:00660 FUS ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS FUS RNA binding protein protein-coding 561_WT_peak_6183 chr6 26555393 26555623 + 45 NA Intergenic tRNA-Pro-CCY|tRNA|tRNA 16936 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 561_WT_peak_7424 chr9 127952581 127952839 + 45 NA promoter-TSS (NM_001123355) promoter-TSS (NM_001123355) -492 NM_001123369 5537 Hs.744091 NM_002721 HPRD:02141 PPP6C PP6|PP6C protein phosphatase 6, catalytic subunit protein-coding 561_WT_peak_4646 chr20 43976883 43977089 + 45 NA promoter-TSS (NM_002999) promoter-TSS (NM_002999) 78 NM_002999 6385 Hs.632267 NM_002999 HPRD:08366 SDC4 SYND4 syndecan 4 protein-coding 561_WT_peak_1273 chr11 47290777 47291130 + 45 NA promoter-TSS (NM_130473) promoter-TSS (NM_130473) 26 NM_130470 8567 Hs.82548 NM_003682 HPRD:04664 MADD DENN|IG20|RAB3GEP MAP-kinase activating death domain protein-coding 561_WT_peak_6823 chr7 114610384 114610565 + 45 NA intron (NM_199072, intron 3 of 4) intron (NM_199072, intron 3 of 4) 48265 NM_001166345 29969 Hs.741413 NM_199072 HPRD:17103 MDFIC HIC MyoD family inhibitor domain containing protein-coding 561_WT_peak_2684 chr16 4897071 4897242 + 45 NA promoter-TSS (NM_001079514) promoter-TSS (NM_001079514) 147 NM_032569 84656 Hs.387255 NM_032569 HPRD:17625 GLYR1 BM045|HIBDL|N-PAC|NP60 glyoxylate reductase 1 homolog (Arabidopsis) protein-coding 561_WT_peak_5444 chr4 37979429 37979605 + 45 NA intron (NM_001253912, intron 2 of 20) CpG 17461 NM_006607 10744 Hs.668806 NM_006607 HPRD:09176 PTTG2 - pituitary tumor-transforming 2 protein-coding 561_WT_peak_73 chr1 16162698 16162811 + 45 NA non-coding (NR_024279, exon 2 of 2) non-coding (NR_024279, exon 2 of 2) -11605 NM_015001 23013 Hs.744843 NM_015001 HPRD:10230 SPEN HIAA0929|MINT|RBM15C|SHARP spen family transcriptional repressor protein-coding 561_WT_peak_7340 chr9 93913405 93913591 + 45 NA Intergenic Intergenic -76084 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 561_WT_peak_4623 chr20 35672094 35672368 + 45 NA intron (NM_183404, intron 13 of 20) L1MB8|LINE|L1 52172 NM_002895 5933 Hs.207745 NM_002895 HPRD:00312 RBL1 CP107|PRB1|p107 retinoblastoma-like 1 protein-coding 561_WT_peak_5073 chr3 42642173 42642412 + 45 NA intron (NM_005385, intron 1 of 16) CpG 145 NM_005385 4820 Hs.529509 NM_005385 HPRD:01195 NKTR p104 natural killer cell triggering receptor protein-coding 561_WT_peak_2728 chr16 21964100 21964285 + 45 NA promoter-TSS (NM_003366) promoter-TSS (NM_003366) -417 NM_003366 7385 Hs.528803 NM_003366 HPRD:01876 UQCRC2 MC3DN5|QCR2|UQCR2 ubiquinol-cytochrome c reductase core protein II protein-coding 561_WT_peak_5136 chr3 57678611 57678855 + 44 NA promoter-TSS (NM_152678) promoter-TSS (NM_152678) 83 NM_152678 201627 Hs.91085 NM_152678 HPRD:08756 DENND6A AFI1A|FAM116A DENN/MADD domain containing 6A protein-coding 561_WT_peak_4434 chr2 201754010 201754327 + 44 NA promoter-TSS (NM_032472) promoter-TSS (NM_032472) 60 NM_021824 60491 Hs.145284 NM_021824 HPRD:10424 NIF3L1 ALS2CR1|CALS-7 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) protein-coding 561_WT_peak_3226 chr17 46518476 46518661 + 44 NA Intergenic Intergenic -3627 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 561_WT_peak_1039 chr10 73486968 73487072 + 44 NA intron (NM_001171930, intron 29 of 30) MIR|SINE|MIR -7442 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 561_WT_peak_4768 chr21 33103782 33104303 + 44 NA 5' UTR (NM_001145445, exon 1 of 20) 5' UTR (NM_001145445, exon 1 of 20) 389 NM_001145445 57466 Hs.17255 NM_020706 HPRD:11551 SCAF4 SFRS15|SRA4 SR-related CTD-associated factor 4 protein-coding 561_WT_peak_3928 chr19 58666432 58666635 + 44 NA Intergenic CpG -4385 NM_024620 79673 Hs.458377 NM_024620 HPRD:07779 ZNF329 - zinc finger protein 329 protein-coding 561_WT_peak_3782 chr19 42772636 42772879 + 44 NA Intergenic CpG -13441 NM_006494 2077 Hs.655969 NM_006494 HPRD:09942 ERF CRS4|PE-2|PE2 Ets2 repressor factor protein-coding 561_WT_peak_4417 chr2 197105039 197105214 + 44 NA intron (NM_020760, intron 21 of 28) intron (NM_020760, intron 21 of 28) -19622 NR_110225 101927482 Hs.191841 NR_110225 ENSG00000229056 LOC101927482 - uncharacterized LOC101927482 ncRNA 561_WT_peak_1191 chr11 4115644 4116004 + 44 NA promoter-TSS (NM_001033) promoter-TSS (NM_001033) -100 NM_001033 6240 Hs.445705 NM_001033 HPRD:01588 RRM1 R1|RIR1|RR1 ribonucleotide reductase M1 protein-coding 561_WT_peak_4548 chr20 3400947 3401131 + 44 NA Intergenic MLT1F|LTR|ERVL-MaLR -12730 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 561_WT_peak_7302 chr9 75058568 75058670 + 44 NA Intergenic MER63D|DNA|hAT-Blackjack -78098 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 561_WT_peak_6791 chr7 102353872 102354065 + 44 NA Intergenic Intergenic -35431 NR_026879 222234 Hs.202543 NM_147194 FAM185A - family with sequence similarity 185, member A protein-coding 561_WT_peak_4875 chr22 30579860 30580134 + 44 NA Intergenic Intergenic 62843 NM_001257135 3976 Hs.2250 NM_002309 HPRD:08869 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 561_WT_peak_1398 chr11 68606371 68606545 + 44 NA intron (NM_001031847, intron 1 of 18) intron (NM_001031847, intron 1 of 18) 2941 NM_001876 1374 Hs.503043 NM_001876 HPRD:02755 CPT1A CPT1|CPT1-L|L-CPT1 carnitine palmitoyltransferase 1A (liver) protein-coding 561_WT_peak_744-2 chr1 224370479 224370483 + 44 NA promoter-TSS (NM_003676) promoter-TSS (NM_003676) -429 NM_003676 8560 Hs.299878 NM_003676 HPRD:13133 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|MLD delta(4)-desaturase, sphingolipid 1 protein-coding 561_WT_peak_4005 chr2 28474346 28474456 + 44 NA intron (NM_199193, intron 11 of 13) intron (NM_199193, intron 11 of 13) -44573 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 561_WT_peak_7302-2 chr9 75058738 75058738 + 44 NA Intergenic MER63D|DNA|hAT-Blackjack -77979 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 561_WT_peak_4660 chr20 47335639 47335812 + 44 NA intron (NM_020820, intron 5 of 39) intron (NM_020820, intron 5 of 39) 108695 NM_020820 57580 Hs.153310 NM_020820 HPRD:06066 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 561_WT_peak_581 chr1 161015366 161015555 + 44 NA promoter-TSS (NM_001276373) promoter-TSS (NM_001276373) 309 NM_007122 7391 Hs.414880 NM_007122 HPRD:01880 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 561_WT_peak_7288 chr9 71589446 71589520 + 44 NA intron (NR_110647, intron 1 of 2) intron (NR_110647, intron 1 of 2) 1274 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 561_WT_peak_706 chr1 206976824 206976994 + 44 NA intron (NM_153758, intron 1 of 5) intron (NM_153758, intron 1 of 5) 4694 NM_153758 29949 Hs.661017 NM_013371 HPRD:05747 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 561_WT_peak_4908 chr22 38004371 38005087 + 44 NA promoter-TSS (NM_001172688) promoter-TSS (NM_001172688) 248 NM_001172687 26088 Hs.499158 NM_013365 HPRD:12078 GGA1 - golgi-associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 561_WT_peak_744 chr1 224370296 224370433 + 44 NA promoter-TSS (NM_003676) promoter-TSS (NM_003676) -546 NM_003676 8560 Hs.299878 NM_003676 HPRD:13133 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|MLD delta(4)-desaturase, sphingolipid 1 protein-coding 561_WT_peak_4924 chr22 40236238 40236465 + 44 NA intron (NM_152512, intron 3 of 6) intron (NM_152512, intron 3 of 6) 53443 NM_152512 150350 Hs.474869 NM_152512 HPRD:08063 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 561_WT_peak_2348 chr14 95989708 95989934 + 44 NA Intergenic Intergenic 10145 NR_003002 677768 Hs.448753 NR_003002 ENSG00000252481 SCARNA13 U93 small Cajal body-specific RNA 13 ncRNA 561_WT_peak_541 chr1 154531342 154531537 + 44 NA promoter-TSS (NM_017582) promoter-TSS (NM_017582) -319 NM_017582 55585 Hs.607928 NM_017582 HPRD:15601 UBE2Q1 GTAP|NICE-5|UBE2Q ubiquitin-conjugating enzyme E2Q family member 1 protein-coding 561_WT_peak_236 chr1 52522009 52522371 + 44 NA promoter-TSS (NR_046406) promoter-TSS (NR_046406) 333 NM_152265 91408 Hs.429839 NM_152265 HPRD:17521 BTF3L4 - basic transcription factor 3-like 4 protein-coding 561_WT_peak_2197 chr14 50329816 50330022 + 44 NA Intergenic Intergenic -10380 NM_004713 9147 Hs.655964 NM_004713 HPRD:08494 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 561_WT_peak_5093 chr3 47823340 47823730 + 44 NA promoter-TSS (NM_003074) promoter-TSS (NM_003074) -130 NM_003074 6599 Hs.476179 NM_003074 HPRD:03435 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 protein-coding 561_WT_peak_3374 chr17 78235360 78235545 + 44 NA intron (NM_020954, intron 1 of 16) intron (NM_020954, intron 1 of 16) 792 NM_020954 57674 Hs.195642 NM_020914 HPRD:10716 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 561_WT_peak_6993 chr8 41998035 41998170 + 44 NA Intergenic CpG -12362 NM_001134296 10947 Hs.654529 NM_006803 HPRD:09801 AP3M2 AP47B|CLA20|P47B adaptor-related protein complex 3, mu 2 subunit protein-coding 561_WT_peak_2526 chr15 67393633 67393826 + 44 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -24325 NM_001145102 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 561_WT_peak_2923 chr16 81041285 81041476 + 44 NA promoter-TSS (NM_020188) promoter-TSS (NM_020188) -878 NM_020188 56942 Hs.55028 NM_020188 CMC2 2310061C15Rik|C16orf61 C-x(9)-C motif containing 2 protein-coding 561_WT_peak_6732 chr7 76256425 76256774 + 44 NA promoter-TSS (NM_012230) promoter-TSS (NM_012230) 21 NM_152992 22932 Hs.488877 NM_012230 HPRD:15974 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 561_WT_peak_1023 chr10 70286964 70287395 + 43 NA 5' UTR (NM_152707, exon 1 of 9) 5' UTR (NM_152707, exon 1 of 9) 101 NM_152707 8034 Hs.180408 NM_152707 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 (mitochondrial carrier), member 16 protein-coding 561_WT_peak_1557 chr12 4616101 4616330 + 43 NA intron (NM_020374, intron 9 of 13) intron (NM_020374, intron 9 of 13) 31422 NM_020374 57102 Hs.302977 NM_020374 HPRD:12609 C12orf4 - chromosome 12 open reading frame 4 protein-coding 561_WT_peak_5823 chr5 76151793 76152144 + 43 NA intron (NM_130772, intron 1 of 4) MSTA|LTR|ERVL-MaLR 6142 NM_130772 170591 Hs.482563 NM_130772 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 561_WT_peak_1504 chr11 118747539 118747732 + 43 NA Intergenic Intergenic -6840 NM_001716 643 Hs.113916 NM_001716 CXCR5 BLR1|CD185|MDR15 chemokine (C-X-C motif) receptor 5 protein-coding 561_WT_peak_7496 chrX 3661893 3662080 + 43 NA Intergenic Intergenic -30311 NM_005044 5613 Hs.390788 NM_005044 HPRD:02097 PRKX PKX1 protein kinase, X-linked protein-coding 561_WT_peak_1415 chr11 75140907 75141080 + 43 NA exon (NM_001039548, exon 1 of 6) exon (NM_001039548, exon 1 of 6) 681 NM_001039548 283212 Hs.292451 NM_173583 HPRD:08747 KLHL35 - kelch-like family member 35 protein-coding 561_WT_peak_7037 chr8 66754455 66754705 + 43 NA promoter-TSS (NM_001242318) promoter-TSS (NM_001242318) -611 NM_001242318 5150 Hs.527119 NM_002603 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 561_WT_peak_4502 chr2 234941171 234941444 + 43 NA Intergenic Intergenic -18039 NM_006944 6694 Hs.444488 NM_006944 HPRD:04029 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 561_WT_peak_6394 chr6 90062012 90062426 + 43 NA intron (NM_016021, intron 1 of 7) CpG 400 NM_016021 51465 Hs.163776 NM_016021 HPRD:15599 UBE2J1 HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|Ubc6p ubiquitin-conjugating enzyme E2, J1 protein-coding 561_WT_peak_3455 chr18 19192556 19192683 + 43 NA intron (NM_006938, intron 1 of 3) intron (NM_006938, intron 1 of 3) 389 NM_006938 6632 Hs.464734 NM_006938 HPRD:03040 SNRPD1 HsT2456|SMD1|SNRPD|Sm-D1 small nuclear ribonucleoprotein D1 polypeptide 16kDa protein-coding 561_WT_peak_2004 chr13 41557188 41557224 + 43 NA promoter-TSS (NM_001145353) promoter-TSS (NM_001145353) -788 NM_001145353 1997 Hs.135646 NM_172373 HPRD:01808 ELF1 - E74-like factor 1 (ets domain transcription factor) protein-coding 561_WT_peak_829 chr1 245026961 245027290 + 43 NA exon (NM_004501, exon 1 of 14) exon (NM_004501, exon 1 of 14) 702 NM_004501 3192 Hs.106212 NM_004501 HPRD:04185 HNRNPU HNRPU|SAF-A|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) protein-coding 561_WT_peak_5528 chr4 84133352 84133545 + 43 NA Intergenic L2a|LINE|L2 72619 NM_015697 27235 Hs.144304 NM_015697 HPRD:13062 COQ2 CL640|COQ10D1|MSA1 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase protein-coding 561_WT_peak_1745 chr12 59991189 59991358 + 43 NA intron (NM_001270622, intron 1 of 5) intron (NM_001270622, intron 1 of 5) 1452 NM_001270623 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 561_WT_peak_1757 chr12 68683990 68684169 + 43 NA Intergenic Intergenic -36798 NM_020525 50616 Hs.287369 NM_020525 HPRD:05621 IL22 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 interleukin 22 protein-coding 561_WT_peak_6279 chr6 31632673 31632902 + 43 NA promoter-TSS (NM_001320) promoter-TSS (NM_001320) 392 NM_033177 7918 Hs.247478 NM_033177 HPRD:00810 GPANK1 ANKRD59|BAT4|D6S54E|G5|GPATCH10 G patch domain and ankyrin repeats 1 protein-coding 561_WT_peak_2992 chr17 4693293 4693464 + 43 NA exon (NM_001014985, exon 4 of 4) exon (NM_001014985, exon 4 of 4) 1124 NM_001014985 388323 Hs.131035 NM_001014985 HPRD:18609 GLTPD2 - glycolipid transfer protein domain containing 2 protein-coding 561_WT_peak_7503 chrX 12996271 12996757 + 43 NA Intergenic Intergenic 3288 NM_021109 7114 Hs.437277 NM_021109 HPRD:02153 TMSB4X FX|PTMB4|TB4X|TMSB4 thymosin beta 4, X-linked protein-coding 561_WT_peak_5055 chr3 33096760 33096968 + 43 NA intron (NM_001135602, intron 3 of 12) intron (NM_001135602, intron 3 of 12) 41429 NM_001136238 643853 Hs.443031 NM_001039770 ENSG00000170266 TMPPE - transmembrane protein with metallophosphoesterase domain protein-coding 561_WT_peak_3551 chr19 797302 797606 + 43 NA promoter-TSS (NM_031991) promoter-TSS (NM_031991) 62 NM_002819 5725 Hs.172550 NM_002819 HPRD:02823 PTBP1 HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB polypyrimidine tract binding protein 1 protein-coding 561_WT_peak_5901 chr5 131439193 131439355 + 43 NA Intergenic Intergenic 29789 NM_000758 1437 Hs.1349 NM_000758 HPRD:00734 CSF2 GMCSF colony stimulating factor 2 (granulocyte-macrophage) protein-coding 561_WT_peak_2572 chr15 81293287 81293682 + 43 NA 5' UTR (NM_022566, exon 1 of 1) 5' UTR (NM_022566, exon 1 of 1) 189 NM_022566 59274 Hs.513071 NM_022566 HPRD:11300 MESDC1 - mesoderm development candidate 1 protein-coding 561_WT_peak_2993 chr17 4851019 4851219 + 43 NA intron (NM_005022, intron 1 of 2) CpG 1262 NM_005022 5216 Hs.494691 NM_005022 HPRD:01452 PFN1 ALS18 profilin 1 protein-coding 561_WT_peak_1808 chr12 95397341 95397541 + 43 NA promoter-TSS (NM_001258338) promoter-TSS (NM_001258338) 48 NM_018838 55967 Hs.506374 NM_018838 HPRD:16781 NDUFA12 B17.2|DAP13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 protein-coding 561_WT_peak_6850 chr7 134143755 134144073 + 43 NA promoter-TSS (NM_001628) promoter-TSS (NM_001628) -26 NM_001628 231 Hs.521212 NM_001628 HPRD:00071 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1, member B1 (aldose reductase) protein-coding 561_WT_peak_43 chr1 8761474 8761737 + 43 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 116094 NM_012102 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 561_WT_peak_4123 chr2 69871070 69871249 + 43 NA promoter-TSS (NM_014911) promoter-TSS (NM_014911) -182 NM_014911 22848 Hs.468878 NM_014911 AAK1 - AP2 associated kinase 1 protein-coding 561_WT_peak_5587 chr4 120988347 120988422 + 43 NA promoter-TSS (NM_002358) promoter-TSS (NM_002358) -371 NM_002358 4085 Hs.591697 NM_002358 MAD2L1 HSMAD2|MAD2 MAD2 mitotic arrest deficient-like 1 (yeast) protein-coding 561_WT_peak_5796 chr5 69881528 69881712 + 43 NA promoter-TSS (NR_027386) promoter-TSS (NR_027386) 9 NR_027386 653188 Hs.631974 NR_027386 ENSG00000253203 GUSBP3 - glucuronidase, beta pseudogene 3 pseudo 561_WT_peak_5831 chr5 79286078 79286253 + 43 NA intron (NM_001167741, intron 1 of 7) intron (NM_001167741, intron 1 of 7) 923 NM_001167741 345778 Hs.531418 NM_001010891 MTX3 - metaxin 3 protein-coding 561_WT_peak_315 chr1 90308744 90308923 + 43 NA intron (NM_018103, intron 1 of 2) intron (NM_018103, intron 1 of 2) 21353 NM_018103 55144 Hs.482087 NM_018103 HPRD:11287 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 561_WT_peak_3146 chr17 36981603 36982031 + 43 NA promoter-TSS (NR_073428) promoter-TSS (NR_073428) -214 NR_073428 54883 Hs.406223 NM_017748 HPRD:07892 CWC25 CCDC49 CWC25 spliceosome-associated protein homolog (S. cerevisiae) protein-coding 561_WT_peak_4698 chr20 54987009 54987231 + 43 NA promoter-TSS (NM_020356) promoter-TSS (NM_020356) -48 NM_001164116 57091 Hs.473144 NM_020356 HPRD:09842 CASS4 C20orf32|CAS4|HEFL|HEPL Cas scaffolding protein family member 4 protein-coding 561_WT_peak_5783 chr5 66511815 66511991 + 43 NA Intergenic Intergenic -19286 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 561_WT_peak_7333 chr9 92041616 92041854 + 43 NA intron (NM_006378, intron 2 of 17) intron (NM_006378, intron 2 of 17) 52876 NM_006378 10507 Hs.494406 NM_006378 HPRD:03520 SEMA4D C9orf164|CD100|M-sema-G|SEMAJ|coll-4 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D protein-coding 561_WT_peak_2506 chr15 63486274 63486416 + 43 NA intron (NM_016530, intron 1 of 7) MIR3|SINE|MIR 4617 NM_016530 51762 Hs.389733 NM_016530 HPRD:11476 RAB8B - RAB8B, member RAS oncogene family protein-coding 561_WT_peak_3918 chr19 58011202 58011539 + 43 NA promoter-TSS (NM_198542) promoter-TSS (NM_198542) 61 NM_198542 374928 Hs.579576 NM_198542 HPRD:14655 ZNF773 ZNF419B zinc finger protein 773 protein-coding 561_WT_peak_3058 chr17 17991270 17991498 + 43 NA exon (NM_001388, exon 1 of 13) exon (NM_001388, exon 1 of 13) 203 NM_001388 1819 Hs.78582 NM_001388 HPRD:04286 DRG2 - developmentally regulated GTP binding protein 2 protein-coding 561_WT_peak_4156 chr2 75185436 75185654 + 43 NA promoter-TSS (NM_019896) promoter-TSS (NM_019896) -230 NM_019896 56655 Hs.469060 NM_019896 POLE4 YHHQ1|p12 polymerase (DNA-directed), epsilon 4, accessory subunit protein-coding 561_WT_peak_5873 chr5 109025720 109025905 + 43 NA 5' UTR (NM_002372, exon 1 of 22) 5' UTR (NM_002372, exon 1 of 22) 745 NM_002372 4124 Hs.432822 NM_002372 HPRD:01110 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase, alpha, class 2A, member 1 protein-coding 561_WT_peak_7331 chr9 91933157 91933337 + 43 NA promoter-TSS (NM_024077) promoter-TSS (NM_024077) -141 NM_001282688 79048 Hs.59804 NM_024077 HPRD:07408 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 561_WT_peak_3252 chr17 53046024 53046337 + 43 NA promoter-TSS (NM_178509) promoter-TSS (NM_178509) 54 NM_178509 252983 Hs.35199 NM_178509 HPRD:18127 STXBP4 Synip syntaxin binding protein 4 protein-coding 561_WT_peak_948 chr10 33428246 33428433 + 43 NA Intergenic Intergenic -181046 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 561_WT_peak_2751 chr16 27561432 27561684 + 43 NA promoter-TSS (NM_001520) promoter-TSS (NM_001520) 90 NM_015202 23247 Hs.460459 NM_015202 HPRD:13806 KIAA0556 - KIAA0556 protein-coding 561_WT_peak_6733 chr7 76614264 76614436 + 43 NA intron (NR_023383, intron 1 of 10) intron (NR_023383, intron 1 of 10) 4211 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11|PMS2P11|PMSR6 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene pseudo 561_WT_peak_7534 chrX 47342095 47342365 + 43 NA 5' UTR (NM_007130, exon 1 of 5) 5' UTR (NM_007130, exon 1 of 5) 115 NM_007130 7592 Hs.496074 NM_007130 HPRD:02447 ZNF41 MRX89 zinc finger protein 41 protein-coding 561_WT_peak_6512 chr6 149805980 149806150 + 43 NA promoter-TSS (NM_207360) promoter-TSS (NM_207360) 83 NM_207360 340152 Hs.632618 NM_207360 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 561_WT_peak_5813 chr5 74632457 74632872 + 43 NA promoter-TSS (NM_000859) promoter-TSS (NM_000859) -329 NM_000859 3156 Hs.628096 NM_000859 HPRD:00836 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 561_WT_peak_1605 chr12 12627827 12628010 + 43 NA 3' UTR (NM_030640, exon 7 of 7) 3' UTR (NM_030640, exon 7 of 7) 87530 NM_030640 80824 Hs.536535 NM_030640 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 561_WT_peak_666 chr1 197871693 197871923 + 43 NA exon (NM_001024594, exon 1 of 3) exon (NM_001024594, exon 1 of 3) 126 NM_001024594 388722 Hs.61329 NM_001024594 HPRD:18611 C1orf53 - chromosome 1 open reading frame 53 protein-coding 561_WT_peak_3879 chr19 52490104 52490347 + 43 NA promoter-TSS (NM_021632) promoter-TSS (NM_021632) -146 NM_021632 59348 Hs.407694 NM_021632 HPRD:05663 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 561_WT_peak_6194 chr6 27107326 27107504 + 43 NA TTS (NM_003495) TTS (NM_003495) 327 NM_003495 8294 Hs.248172 NM_003495 HIST1H4I H4/m|H4FM|H4M histone cluster 1, H4i protein-coding 561_WT_peak_3173 chr17 38803724 38804008 + 43 NA intron (NM_003079, intron 1 of 10) intron (NM_003079, intron 1 of 10) 237 NM_003079 6605 Hs.743978 NM_003079 HPRD:04382 SMARCE1 BAF57 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 561_WT_peak_358 chr1 109642746 109643026 + 43 NA promoter-TSS (NR_003023) promoter-TSS (NR_003023) 71 NR_003023 677766 Hs.550815 NR_003023 ENSG00000270066 SCARNA2 HBII-382|mgU2-25/61 small Cajal body-specific RNA 2 ncRNA 561_WT_peak_2670 chr16 3285154 3285383 + 43 NA promoter-TSS (NM_001145447) promoter-TSS (NM_001145447) -82 NM_003454 7752 Hs.632222 NM_003454 HPRD:04452 ZNF200 - zinc finger protein 200 protein-coding 561_WT_peak_2272 chr14 71288709 71288902 + 43 NA Intergenic CpG -12917 NM_033141 4293 Hs.445496 NM_033141 HPRD:15965 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 561_WT_peak_4115 chr2 68384484 68384694 + 43 NA promoter-TSS (NM_020143) promoter-TSS (NM_020143) 89 NR_046234 116143 Hs.631877 NM_138458 HPRD:14012 WDR92 - WD repeat domain 92 protein-coding 561_WT_peak_6316 chr6 40996086 40996258 + 43 NA exon (NM_173561, exon 9 of 9) exon (NM_173561, exon 9 of 9) -5153 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 561_WT_peak_866 chr10 6205815 6206123 + 43 NA intron (NM_001282630, intron 1 of 14) CpG -11744 NR_039698 100628560 NR_039698 MIR3155B hsa-mir-3155b microRNA 3155b ncRNA 561_WT_peak_905 chr10 18940710 18940752 + 43 NA promoter-TSS (NM_182543) promoter-TSS (NM_182543) -165 NM_182543 221078 Hs.396175 NM_182543 HPRD:14843 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun domain family, member 6 protein-coding 561_WT_peak_2538 chr15 70053353 70053561 + 43 NA Intergenic Intergenic -74116 NR_026764 414926 Hs.569502 NR_026764 ENSG00000259703 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 561_WT_peak_7520 chrX 39169008 39169208 + 43 NA intron (NR_038968, intron 2 of 3) intron (NR_038968, intron 2 of 3) 17508 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 561_WT_peak_1624 chr12 19592469 19592919 + 43 NA promoter-TSS (NM_001114176) promoter-TSS (NM_001114176) 86 NM_153207 121536 Hs.126497 NM_153207 AEBP2 - AE binding protein 2 protein-coding 561_WT_peak_6969 chr8 29991371 29991560 + 43 NA intron (NM_001100916, intron 2 of 2) MER65A|LTR|ERV1 10735 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 561_WT_peak_178 chr1 36396702 36397191 + 43 NA 5' UTR (NM_024852, exon 1 of 19) 5' UTR (NM_024852, exon 1 of 19) 263 NM_177422 192669 Hs.657659 NM_024852 HPRD:09558 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 561_WT_peak_3300 chr17 62223717 62223905 + 43 NA TTS (NR_004380) TTS (NR_004380) 112 NR_002995 677842 Hs.405444 NR_002995 ENSG00000266402 SNORA76C ACA62|SNORA76 small nucleolar RNA, H/ACA box 76C snoRNA 561_WT_peak_4106 chr2 65215298 65215560 + 43 NA promoter-TSS (NM_001193493) promoter-TSS (NM_001193493) -150 NM_001193493 6509 Hs.654352 NM_003038 HPRD:02576 SLC1A4 ASCT1|SATT solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 protein-coding 561_WT_peak_4872 chr22 30147305 30147385 + 43 NA intron (NM_001003692, intron 1 of 5) MIR|SINE|MIR 15624 NM_019103 55954 Hs.713647 NM_019103 HPRD:14247 ZMAT5 SNRNP20 zinc finger, matrin-type 5 protein-coding 561_WT_peak_2330 chr14 91544797 91545077 + 43 NA Intergenic Intergenic -17944 NM_004755 9252 Hs.510225 NM_004755 HPRD:06789 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase, 90kDa, polypeptide 5 protein-coding 561_WT_peak_7567 chrX 67718943 67719124 + 43 NA intron (NM_001195214, intron 1 of 5) CpG 409 NM_173834 286451 Hs.82719 NM_173834 HPRD:06639 YIPF6 FinGER6 Yip1 domain family, member 6 protein-coding 561_WT_peak_2032 chr13 46626674 46627015 + 43 NA promoter-TSS (NR_046227) promoter-TSS (NR_046227) 52 NM_015070 23091 Hs.136102 NM_015070 HPRD:08307 ZC3H13 KIAA0853 zinc finger CCCH-type containing 13 protein-coding 561_WT_peak_3019 chr17 7518608 7518734 + 43 NA promoter-TSS (NM_004860) promoter-TSS (NM_004860) -456 NM_004860 9513 Hs.52788 NM_004860 HPRD:05629 FXR2 FMR1L2|FXR2P fragile X mental retardation, autosomal homolog 2 protein-coding 561_WT_peak_515 chr1 150533987 150534162 + 43 NA TTS (NM_019032) TTS (NM_019032) 9669 NR_036211 100422997 NR_036211 miRBase:MI0015856 MIR4257 - microRNA 4257 ncRNA 561_WT_peak_6910 chr7 154997373 154997685 + 43 NA Intergenic Charlie1b|DNA|hAT-Charlie -91957 NM_198337 3638 Hs.520819 NM_005542 HPRD:03633 INSIG1 CL-6|CL6 insulin induced gene 1 protein-coding 561_WT_peak_3793 chr19 45458665 45458896 + 43 NA intron (NM_001294, intron 1 of 13) CpG 299 NM_001294 1209 Hs.444441 NM_001294 ENSG00000104853 CLPTM1 - cleft lip and palate associated transmembrane protein 1 protein-coding 561_WT_peak_5154 chr3 71493625 71493943 + 43 NA intron (NM_001012505, intron 3 of 6) intron (NM_001012505, intron 3 of 6) 97456 NR_031697 100302112 NR_031697 miRBase:MI0006431 MIR1284 MIRN1284|hsa-mir-1284 microRNA 1284 ncRNA 561_WT_peak_6281 chr6 31705889 31706004 + 43 NA promoter-TSS (NM_001287593).7 promoter-TSS (NM_001287593).7 -851 NM_001287593 1192 Hs.414565 NM_001288 HPRD:04188 CLIC1 G6|NCC27 chloride intracellular channel 1 protein-coding 561_WT_peak_7223 chr9 19230734 19230912 + 43 NA promoter-TSS (NM_017925) promoter-TSS (NM_017925) 60 NM_017925 55667 Hs.249591 NM_017925 HPRD:12927 DENND4C C9orf55|C9orf55B|bA513M16.3 DENN/MADD domain containing 4C protein-coding 561_WT_peak_2219 chr14 55196910 55197084 + 43 NA intron (NM_001161576, intron 2 of 10) intron (NM_001161576, intron 2 of 10) -24509 NM_001161577 23034 Hs.98259 NM_015589 HPRD:10209 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 561_WT_peak_1775 chr12 76414122 76414402 + 43 NA Intergenic Intergenic 11294 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 561_WT_peak_6052 chr5 180237325 180237512 + 43 NA promoter-TSS (NM_001114618) promoter-TSS (NM_001114618) -281 NM_001114617 4245 Hs.519818 NM_002406 HPRD:01189 MGAT1 GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|MGAT mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 561_WT_peak_6571 chr7 1980109 1980424 + 43 NA intron (NM_001013836, intron 16 of 18) intron (NM_001013836, intron 16 of 18) -96377 NR_039799 100616160 NR_039799 MIR4655 - microRNA 4655 ncRNA 561_WT_peak_2415 chr15 31284114 31284307 + 43 NA promoter-TSS (NM_017762) promoter-TSS (NM_017762) -403 NM_017762 54893 Hs.30141 NM_017762 HPRD:07895 MTMR10 - myotubularin related protein 10 protein-coding 561_WT_peak_2913 chr16 78068327 78068575 + 43 NA Intergenic Intergenic 5465 NM_001244755 10143 Hs.177936 NM_005752 HPRD:13072 CLEC3A CLECSF1 C-type lectin domain family 3, member A protein-coding 561_WT_peak_1534 chr11 134123287 134123619 + 43 NA promoter-TSS (NM_014384) promoter-TSS (NM_014384) 19 NM_014384 27034 Hs.14791 NM_014384 HPRD:11985 ACAD8 ACAD-8|ARC42 acyl-CoA dehydrogenase family, member 8 protein-coding 561_WT_peak_3821 chr19 47734041 47734266 + 43 NA intron (NM_001127240, intron 1 of 3) CpG 298 NM_014417 27113 Hs.467020 NM_014417 HPRD:16165 BBC3 JFY-1|JFY1|PUMA BCL2 binding component 3 protein-coding 561_WT_peak_4518 chr2 240210849 240211022 + 43 NA intron (NM_006037, intron 2 of 26) L1MEe|LINE|L1 -16222 NR_036229 100423043 NR_036229 miRBase:MI0015875 MIR4269 - microRNA 4269 ncRNA 561_WT_peak_5153 chr3 71493332 71493566 + 43 NA intron (NM_001012505, intron 3 of 6) intron (NM_001012505, intron 3 of 6) 97791 NR_031697 100302112 NR_031697 miRBase:MI0006431 MIR1284 MIRN1284|hsa-mir-1284 microRNA 1284 ncRNA 561_WT_peak_7101 chr8 103819122 103819310 + 43 NA Intergenic CpG 57181 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 561_WT_peak_812 chr1 236029871 236030082 + 43 NA intron (NM_001301365, intron 1 of 52) CpG 251 NM_000081 1130 Hs.532411 NM_000081 HPRD:06060 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 561_WT_peak_7364 chr9 98912616 98912981 + 43 NA Intergenic MER20|DNA|hAT-Charlie -34105 NM_001256408 158434 Hs.381771 NM_001256408 LOC158434 - uncharacterized LOC158434 protein-coding 561_WT_peak_1066 chr10 76970553 76970854 + 43 NA intron (NR_033675, intron 1 of 10) CpG 403 NR_033675 7417 Hs.355927 NM_003375 HPRD:01904 VDAC2 POR voltage-dependent anion channel 2 protein-coding 561_WT_peak_4474 chr2 219524199 219524450 + 43 NA promoter-TSS (NM_004328) promoter-TSS (NM_004328) 31 NR_073599 7701 Hs.657969 NM_005081 HPRD:04967 ZNF142 pHZ-49 zinc finger protein 142 protein-coding 561_WT_peak_5230 chr3 121865322 121865492 + 42 NA Intergenic Intergenic -37123 NM_000388 846 Hs.435615 NM_000388 HPRD:03122 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1 calcium-sensing receptor protein-coding 561_WT_peak_5229 chr3 121749492 121749547 + 42 NA Intergenic Intergenic -8392 NM_175924 286676 Hs.98484 NM_175924 HPRD:13735 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin-like domain containing receptor 1 protein-coding 561_WT_peak_1657 chr12 42491983 42492196 + 42 NA intron (NM_001099650, intron 4 of 6) MIR|SINE|MIR 46584 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 561_WT_peak_1030 chr10 70848223 70848432 + 42 NA intron (NR_036430, intron 1 of 1) intron (NR_036430, intron 1 of 1) 499 NR_036430 5552 Hs.1908 NM_002727 HPRD:01513 SRGN PPG|PRG|PRG1 serglycin protein-coding 561_WT_peak_5764 chr5 58395239 58395426 + 42 NA intron (NM_001104631, intron 5 of 14) intron (NM_001104631, intron 5 of 14) -59993 NM_001197222 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 561_WT_peak_6796 chr7 102985131 102985382 + 42 NA promoter-TSS (NM_014377) promoter-TSS (NM_014377) 64 NM_014377 27000 Hs.558476 NM_014377 ENSG00000105821 DNAJC2 MPHOSPH11|MPP11|ZRF1|ZUO1 DnaJ (Hsp40) homolog, subfamily C, member 2 protein-coding 561_WT_peak_680 chr1 202976470 202976728 + 42 NA promoter-TSS (NM_138391) promoter-TSS (NM_138391) 63 NM_001079809 653659 Hs.652908 NM_001079809 TMEM183B C1orf37-DUP transmembrane protein 183B protein-coding 561_WT_peak_1353 chr11 65192333 65192353 + 42 NA non-coding (NR_028272, exon 1 of 1) non-coding (NR_028272, exon 1 of 1) 2074 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_341 chr1 100816807 100817025 + 42 NA Intergenic Intergenic -1107 NM_003672 8556 Hs.127411 NM_003672 HPRD:04614 CDC14A cdc14|hCDC14 cell division cycle 14A protein-coding 561_WT_peak_1764 chr12 70636588 70636761 + 42 NA promoter-TSS (NM_001199302) promoter-TSS (NM_001199302) -100 NM_014515 4848 Hs.133350 NM_014515 HPRD:05367 CNOT2 CDC36|NOT2|NOT2H CCR4-NOT transcription complex, subunit 2 protein-coding 561_WT_peak_3775 chr19 41903557 41903621 + 42 NA promoter-TSS (NM_000709) promoter-TSS (NM_000709) -105 NM_000709 593 Hs.433307 NM_000709 HPRD:02009 BCKDHA BCKDE1A|MSU|MSUD1|OVD1A branched chain keto acid dehydrogenase E1, alpha polypeptide protein-coding 561_WT_peak_2719 chr16 20912094 20912337 + 42 NA promoter-TSS (NM_173475) promoter-TSS (NM_173475) 140 NM_001128302 57149 Hs.745012 NM_020424 HPRD:14254 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 561_WT_peak_3765 chr19 40324309 40324629 + 42 NA TTS (NM_001436) TTS (NM_001436) 404 NM_006483 9149 Hs.130988 NM_004714 HPRD:05188 DYRK1B AOMS3|MIRK dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B protein-coding 561_WT_peak_2748 chr16 27248648 27248842 + 42 NA intron (NM_145080, intron 2 of 7) intron (NM_145080, intron 2 of 7) -30781 NR_037184 400512 Hs.434412 NR_037184 ENSG00000245888 FLJ21408 - uncharacterized LOC400512 ncRNA 561_WT_peak_6079 chr6 2989014 2989273 + 42 NA non-coding (NR_026855, exon 2 of 2) non-coding (NR_026855, exon 2 of 2) 942 NR_026856 401232 Hs.720158 NM_207495 HPRD:16819 LINC01011 DKFZP686I15217 long intergenic non-protein coding RNA 1011 ncRNA 561_WT_peak_4857 chr22 24823620 24823852 + 42 NA intron (NR_103543, intron 1 of 1) intron (NR_103543, intron 1 of 1) 206 NM_000675 135 Hs.197029 NM_000675 HPRD:00043 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 561_WT_peak_2440 chr15 41522883 41523141 + 42 NA promoter-TSS (NM_007236) promoter-TSS (NM_007236) -57 NM_152596 161829 Hs.307999 NM_152596 HPRD:14571 EXD1 EXDL1 exonuclease 3'-5' domain containing 1 protein-coding 561_WT_peak_3267 chr17 56421757 56422081 + 42 NA TTS (NM_003168) TTS (NM_003168) 7356 NR_038417 100506779 Hs.718477 NR_038410 ENSG00000265148 BZRAP1-AS1 - BZRAP1 antisense RNA 1 ncRNA 561_WT_peak_488 chr1 149577113 149577283 + 42 NA intron (NR_111955, intron 1 of 1) CpG 731 NR_024511 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 561_WT_peak_232 chr1 52195014 52195230 + 42 NA promoter-TSS (NM_148907) promoter-TSS (NM_148907) -364 NM_148904 114883 Hs.21938 NM_024586 HPRD:09479 OSBPL9 ORP-9|ORP9 oxysterol binding protein-like 9 protein-coding 561_WT_peak_3775-2 chr19 41903676 41903857 + 42 NA promoter-TSS (NM_000709) promoter-TSS (NM_000709) 72 NM_001164783 593 Hs.433307 NM_000709 HPRD:02009 BCKDHA BCKDE1A|MSU|MSUD1|OVD1A branched chain keto acid dehydrogenase E1, alpha polypeptide protein-coding 561_WT_peak_6717 chr7 74306914 74307138 + 42 NA promoter-TSS (NR_040584) promoter-TSS (NR_040584) 139 NR_027776 5383 Hs.292996 NM_174930 HPRD:17867 PMS2P5 PMS2L5|PMS7 postmeiotic segregation increased 2 pseudogene 5 pseudo 561_WT_peak_5674 chr5 16466081 16466271 + 42 NA promoter-TSS (NM_033414) promoter-TSS (NM_033414) -282 NM_033414 90441 Hs.60300 NM_033414 HPRD:12278 ZNF622 ZPR9 zinc finger protein 622 protein-coding 561_WT_peak_4341 chr2 158274849 158275021 + 42 NA intron (NM_004288, intron 7 of 7) intron (NM_004288, intron 7 of 7) 25669 NM_004288 9595 Hs.270 NM_004288 HPRD:09192 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 561_WT_peak_6588 chr7 7606579 7606787 + 42 NA promoter-TSS (NM_019005) promoter-TSS (NM_019005) 67 NM_019005 54468 Hs.520215 NM_019005 HPRD:07898 MIOS - missing oocyte, meiosis regulator, homolog (Drosophila) protein-coding 561_WT_peak_1055 chr10 75608952 75609129 + 42 NA exon (NM_001204492, exon 6 of 21) exon (NM_001204492, exon 6 of 21) 25309 NM_001222 818 Hs.523045 NM_001222 HPRD:03672 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin-dependent protein kinase II gamma protein-coding 561_WT_peak_1718 chr12 55329411 55329455 + 42 NA Intergenic MSTB1|LTR|ERVL-MaLR 38083 NM_014796 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 561_WT_peak_304 chr1 86861641 86861914 + 42 NA 5' UTR (NM_020729, exon 1 of 18) 5' UTR (NM_020729, exon 1 of 18) 248 NM_001007022 57489 Hs.149360 NM_020729 HPRD:11134 ODF2L dJ977L11.1 outer dense fiber of sperm tails 2-like protein-coding 561_WT_peak_5768 chr5 61602955 61603143 + 42 NA intron (NM_001243953, intron 1 of 19) intron (NM_001243953, intron 1 of 19) 1060 NM_004520 3796 Hs.558351 NM_004520 KIF2A CDCBM3|HK2|KIF2 kinesin heavy chain member 2A protein-coding 561_WT_peak_745 chr1 224370593 224370819 + 42 NA promoter-TSS (NM_003676) promoter-TSS (NM_003676) -204 NM_003676 8560 Hs.299878 NM_003676 HPRD:13133 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|MLD delta(4)-desaturase, sphingolipid 1 protein-coding 561_WT_peak_7411 chr9 123555564 123555903 + 42 NA promoter-TSS (NM_012164) promoter-TSS (NM_012164) 7 NM_012164 26190 Hs.494985 NM_012164 HPRD:09950 FBXW2 FBW2|Fwd2|Md6 F-box and WD repeat domain containing 2 protein-coding 561_WT_peak_3783 chr19 42829395 42829581 + 42 NA promoter-TSS (NM_001410) promoter-TSS (NM_001410) -273 NM_001410 1954 Hs.132483 NM_001410 HPRD:10370 MEGF8 C19orf49|CRPT2|EGFL4|SBP1 multiple EGF-like-domains 8 protein-coding 561_WT_peak_1400 chr11 69489920 69490125 + 42 NA 5' UTR (NM_153451, exon 1 of 5) 5' UTR (NM_153451, exon 1 of 5) 143 NM_153451 220064 Hs.667996 NM_153451 HPRD:06245 ORAOV1 TAOS1 oral cancer overexpressed 1 protein-coding 561_WT_peak_4697 chr20 54967702 54967886 + 41 NA promoter-TSS (NM_198436) promoter-TSS (NM_198436) 87 NM_001033522 1477 Hs.172865 NM_001324 HPRD:02653 CSTF1 CstF-50|CstFp50 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa protein-coding 561_WT_peak_5591 chr4 128886026 128886320 + 41 NA promoter-TSS (NM_001039717) promoter-TSS (NM_001039717) -288 NM_001039717 80167 Hs.445817 NM_025097 HPRD:07953 C4orf29 - chromosome 4 open reading frame 29 protein-coding 561_WT_peak_1861 chr12 112432493 112432734 + 41 NA intron (NR_122119, intron 2 of 8) MER11D|LTR|ERVK 18410 NM_001294314 89894 Hs.506815 NM_138341 HPRD:11275 TMEM116 - transmembrane protein 116 protein-coding 561_WT_peak_4969 chr22 50247013 50247202 + 41 NA promoter-TSS (NM_014838) promoter-TSS (NM_014838) -390 NM_014838 9889 Hs.475208 NM_014838 HPRD:11692 ZBED4 - zinc finger, BED-type containing 4 protein-coding 561_WT_peak_701 chr1 206541448 206541666 + 41 NA intron (NM_001170637, intron 1 of 19) intron (NM_001170637, intron 1 of 19) -15810 NR_120535 100996712 Hs.497575 NM_001271887 SRGAP2D - SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudo 561_WT_peak_1981 chr13 31314279 31314464 + 41 NA intron (NM_001204406, intron 2 of 5) L3b|LINE|CR1 4726 NM_001629 241 Hs.507658 NM_001629 HPRD:04742 ALOX5AP FLAP arachidonate 5-lipoxygenase-activating protein protein-coding 561_WT_peak_756 chr1 226496613 226496848 + 41 NA intron (NM_001270410, intron 1 of 14) CpG 474 NM_001270409 286826 Hs.120817 NM_173083 HPRD:13990 LIN9 BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 lin-9 DREAM MuvB core complex component protein-coding 561_WT_peak_1602 chr12 12532947 12532998 + 41 NA intron (NM_001300742, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 22959 NM_058169 118426 Hs.720779 NM_058169 HPRD:17439 LOH12CR1 LOH1CR12 loss of heterozygosity, 12, chromosomal region 1 protein-coding 561_WT_peak_6276 chr6 31543228 31543540 + 41 NA promoter-TSS (NM_000594).3 promoter-TSS (NM_000594).3 40 NM_000594 7124 Hs.241570 NM_000594 HPRD:01855 TNF DIF|TNF-alpha|TNFA|TNFSF2 tumor necrosis factor protein-coding 561_WT_peak_1784 chr12 88693548 88693807 + 41 NA Intergenic Intergenic 157604 NM_181783 160418 Hs.331268 NM_181783 HPRD:10243 TMTC3 SMILE transmembrane and tetratricopeptide repeat containing 3 protein-coding 561_WT_peak_7500 chrX 9971912 9972188 + 41 NA Intergenic Intergenic -11745 NM_015691 55841 Hs.527524 NM_015691 HPRD:11136 WWC3 BM042 WWC family member 3 protein-coding 561_WT_peak_6164 chr6 26284712 26284882 + 41 NA TTS (NM_003543) TTS (NM_003543) 930 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 561_WT_peak_646 chr1 183440172 183440389 + 41 NA non-coding (NR_040063, exon 1 of 5) non-coding (NR_040063, exon 1 of 5) 837 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 561_WT_peak_2381 chr14 103058427 103058830 + 41 NA promoter-TSS (NM_015156) promoter-TSS (NM_015156) -368 NM_015156 23186 Hs.510521 NM_015156 HPRD:09645 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 561_WT_peak_538 chr1 154155470 154155723 + 41 NA non-coding (NR_103461, exon 1 of 8) non-coding (NR_103461, exon 1 of 8) 129 NM_153649 7170 Hs.535581 NM_152263 HPRD:01840 TPM3 CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPMsk3|TRK|hscp30 tropomyosin 3 protein-coding 561_WT_peak_6012 chr5 169705779 169705962 + 41 NA intron (NM_005565, intron 3 of 20) intron (NM_005565, intron 3 of 20) 18952 NM_005565 3937 Hs.304475 NM_005565 LCP2 SLP-76|SLP76 lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) protein-coding 561_WT_peak_6383 chr6 86352406 86352643 + 41 NA promoter-TSS (NM_001253771) promoter-TSS (NM_001253771) 84 NM_001159674 10492 Hs.571177 NM_006372 HPRD:06734 SYNCRIP GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q synaptotagmin binding, cytoplasmic RNA interacting protein protein-coding 561_WT_peak_5149 chr3 69248549 69248698 + 41 NA intron (NM_015123, intron 11 of 22) intron (NM_015123, intron 11 of 22) -76877 NM_198271 56203 Hs.350621 NM_198271 HPRD:13993 LMOD3 - leiomodin 3 (fetal) protein-coding 561_WT_peak_656 chr1 185285938 185286267 + 41 NA 5' UTR (NM_006469, exon 1 of 15) 5' UTR (NM_006469, exon 1 of 15) 359 NM_006469 10625 Hs.497183 NM_006469 HPRD:10004 IVNS1ABP FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 561_WT_peak_4175 chr2 86263195 86263385 + 41 NA intron (NM_015425, intron 27 of 33) intron (NM_015425, intron 27 of 33) -12299 NR_026984 90784 Hs.594051 NR_026984 LOC90784 - uncharacterized LOC90784 ncRNA 561_WT_peak_4465 chr2 215674033 215674248 + 41 NA promoter-TSS (NR_110292) promoter-TSS (NR_110292) 295 NR_104215 580 Hs.591642 NM_000465 HPRD:03354 BARD1 - BRCA1 associated RING domain 1 protein-coding 561_WT_peak_532 chr1 153508104 153508405 + 41 NA intron (NM_014624, intron 1 of 2) intron (NM_014624, intron 1 of 2) 463 NM_014624 6277 Hs.275243 NM_014624 HPRD:00237 S100A6 2A9|5B10|CABP|CACY|PRA S100 calcium binding protein A6 protein-coding 561_WT_peak_6682 chr7 64023121 64023331 + 41 NA intron (NM_001130022, intron 1 of 3) intron (NM_001130022, intron 1 of 3) 279 NM_001130022 340252 Hs.520886 NM_178558 HPRD:08296 ZNF680 - zinc finger protein 680 protein-coding 561_WT_peak_1068 chr10 79789283 79789614 + 41 NA promoter-TSS (NM_007055) promoter-TSS (NM_007055) -150 NM_007055 11128 Hs.436896 NM_007055 HPRD:17879 POLR3A ADDH|HLD7|RPC1|RPC155|hRPC155 polymerase (RNA) III (DNA directed) polypeptide A, 155kDa protein-coding 561_WT_peak_6769 chr7 99647283 99647539 + 41 NA promoter-TSS (NM_145914) promoter-TSS (NM_145914) -6 NM_145914 7589 Hs.632294 NM_145914 HPRD:03162 ZSCAN21 NY-REN-21|ZNF38|Zipro1 zinc finger and SCAN domain containing 21 protein-coding 561_WT_peak_2431 chr15 38988591 38988762 + 41 NA promoter-TSS (NM_207444) promoter-TSS (NM_207444) -123 NM_207444 400359 Hs.448785 NM_207444 HPRD:13418 C15orf53 - chromosome 15 open reading frame 53 protein-coding 561_WT_peak_6560 chr6 170921420 170921644 + 41 NA Intergenic CpG -27752 NM_001199461 5134 Hs.367900 NM_002598 HPRD:02922 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 561_WT_peak_3645 chr19 13858894 13859086 + 41 NA intron (NM_030818, intron 1 of 9) intron (NM_030818, intron 1 of 9) 237 NM_030818 81576 Hs.24998 NM_030818 HPRD:11304 CCDC130 - coiled-coil domain containing 130 protein-coding 561_WT_peak_3749 chr19 37958166 37958482 + 41 NA promoter-TSS (NM_152484) promoter-TSS (NM_152484) 15 NM_152484 148266 Hs.511848 NM_152484 HPRD:15849 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 561_WT_peak_1655 chr12 40013863 40014036 + 41 NA promoter-TSS (NM_005164) promoter-TSS (NM_005164) -106 NM_005164 225 Hs.117852 NM_005164 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP-binding cassette, sub-family D (ALD), member 2 protein-coding 561_WT_peak_4091 chr2 62081945 62082201 + 41 NA promoter-TSS (NM_001201543) promoter-TSS (NM_001201543) -795 NM_032180 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161, member A protein-coding 561_WT_peak_4137 chr2 70520541 70520868 + 41 NA intron (NM_003096, intron 1 of 3) CpG 165 NM_003096 6637 Hs.465167 NM_003096 HPRD:04646 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 561_WT_peak_422 chr1 143743079 143743106 + 41 NA intron (NR_027468, intron 1 of 4) intron (NR_027468, intron 1 of 4) 1427 NR_104014 388685 Hs.713362 NM_207400 LINC01138 LINC00875 long intergenic non-protein coding RNA 1138 ncRNA 561_WT_peak_6812 chr7 106808722 106808908 + 41 NA promoter-TSS (NM_001244262) promoter-TSS (NM_001244262) -591 NM_001244262 26959 Hs.162032 NM_012257 HPRD:13634 HBP1 - HMG-box transcription factor 1 protein-coding 561_WT_peak_2708 chr16 15737296 15737405 + 41 NA promoter-TSS (NM_001184999) promoter-TSS (NM_001184999) 199 NR_030159 619553 NR_030159 miRBase:MI0002468 MIR484 MIRN484|hsa-mir-484 microRNA 484 ncRNA 561_WT_peak_7240 chr9 33001251 33001486 + 41 NA non-coding (NR_036579, exon 1 of 8) non-coding (NR_036579, exon 1 of 8) 206 NR_036579 54840 Hs.20158 NM_017692 HPRD:05892 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 561_WT_peak_3133 chr17 34207479 34207651 + 41 NA promoter-TSS (NM_002985) promoter-TSS (NM_002985) -188 NM_002985 6352 Hs.514821 NM_002985 HPRD:01751 CCL5 D17S136E|RANTES|SCYA5|SIS-delta|SISd|TCP228|eoCP chemokine (C-C motif) ligand 5 protein-coding 561_WT_peak_6474 chr6 133135004 133135193 + 41 NA promoter-TSS (NM_001016) promoter-TSS (NM_001016) -610 NM_001016 6206 Hs.546289 NM_001016 RPS12 S12 ribosomal protein S12 protein-coding 561_WT_peak_3788 chr19 44269640 44269832 + 41 NA TTS (NM_002250) TTS (NM_002250) -10594 NM_019108 56006 Hs.466875 NM_019108 HPRD:07800 SMG9 C19orf61|F17127_1 SMG9 nonsense mediated mRNA decay factor protein-coding 561_WT_peak_3858 chr19 50094216 50094401 + 41 NA promoter-TSS (NM_020719) promoter-TSS (NM_020719) -604 NM_020719 57479 Hs.590971 NM_020719 ENSG00000126464 PRR12 KIAA1205 proline rich 12 protein-coding 561_WT_peak_7174 chr8 142413935 142414306 + 41 NA Intergenic MER6|DNA|TcMar-Tigger -17368 NM_007079 11156 Hs.43666 NM_007079 PTP4A3 PRL-3|PRL-R|PRL3 protein tyrosine phosphatase type IVA, member 3 protein-coding 561_WT_peak_4617 chr20 34542421 34542806 + 41 NA promoter-TSS (NM_033630) promoter-TSS (NM_033630) -65 NM_033630 51282 Hs.584909 NM_016558 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 561_WT_peak_6620 chr7 25019999 25020276 + 41 NA promoter-TSS (NM_015550) promoter-TSS (NM_015550) -306 NM_015550 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 561_WT_peak_1497 chr11 117922305 117922513 + 41 NA intron (NR_038318, intron 2 of 3) intron (NR_038318, intron 2 of 3) -25318 NM_019894 56649 Hs.161985 NM_019894 TMPRSS4 CAPH2|MT-SP2|TMPRSS3 transmembrane protease, serine 4 protein-coding 561_WT_peak_1865 chr12 112847248 112847439 + 41 NA promoter-TSS (NM_000970) promoter-TSS (NM_000970) 100 NM_001024662 6128 Hs.546283 NM_000970 HPRD:04745 RPL6 L6|SHUJUN-2|TAXREB107|TXREB1 ribosomal protein L6 protein-coding 561_WT_peak_2341 chr14 93241720 93241907 + 41 NA Intergenic Intergenic -18763 NM_005113 9950 Hs.104320 NM_005113 HPRD:06079 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 561_WT_peak_2792 chr16 31084961 31085389 + 41 NA promoter-TSS (NM_001172668) promoter-TSS (NM_001172668) -352 NM_001172668 79759 Hs.102928 NM_024706 HPRD:07828 ZNF668 - zinc finger protein 668 protein-coding 561_WT_peak_1807 chr12 94853345 94853715 + 41 NA promoter-TSS (NR_027035) promoter-TSS (NR_027035) 234 NM_016122 51134 Hs.279209 NM_016122 HPRD:14869 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83kDa protein-coding 561_WT_peak_6129 chr6 25056466 25056636 + 41 NA Intergenic Intergenic -14155 NM_001286446 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 561_WT_peak_5414 chr4 10020624 10020807 + 41 NA intron (NM_001001290, intron 2 of 12) CpG-19663 2399 NM_020041 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 561_WT_peak_5898 chr5 131355582 131355696 + 41 NA Intergenic Intergenic -7878 NM_001205250 23305 Hs.14945 NM_015256 HPRD:09190 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long-chain family member 6 protein-coding 561_WT_peak_6932 chr8 17780060 17780240 + 41 NA promoter-TSS (NM_006197) promoter-TSS (NM_006197) -216 NM_006197 5108 Hs.491148 NM_006197 HPRD:02624 PCM1 PTC4 pericentriolar material 1 protein-coding 561_WT_peak_3373 chr17 78228655 78228858 + 41 NA Intergenic L1M5|LINE|L1 -5904 NM_001256071 57674 Hs.195642 NM_020914 HPRD:10716 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 561_WT_peak_1110 chr10 98347188 98347203 + 41 NA promoter-TSS (NM_020123) promoter-TSS (NM_020123) -386 NM_020123 56889 Hs.500674 NM_020123 HPRD:18073 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 561_WT_peak_168 chr1 35497549 35497673 + 41 NA promoter-TSS (NM_007167) promoter-TSS (NM_007167) -42 NM_007167 9204 Hs.533986 NM_007167 HPRD:10325 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger, MYM-type 6 protein-coding 561_WT_peak_1772 chr12 76034911 76035174 + 41 NA Intergenic Intergenic -129624 NM_007043 11103 Hs.645517 NM_007043 HPRD:11027 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 561_WT_peak_3458 chr18 20513410 20513600 + 41 NA promoter-TSS (NM_203292) promoter-TSS (NM_203292) 193 NR_039895 100616139 NR_039895 miRBase:MI0017379 MIR4741 - microRNA 4741 ncRNA 561_WT_peak_175 chr1 36022909 36023190 + 41 NA promoter-TSS (NM_024874) promoter-TSS (NM_024874) -12 NM_024874 79932 Hs.456507 NM_024874 HPRD:11164 KIAA0319L - KIAA0319-like protein-coding 561_WT_peak_6425 chr6 108582399 108582763 + 41 NA promoter-TSS (NM_003795) promoter-TSS (NM_003795) -117 NM_001300929 8724 Hs.12102 NM_003795 HPRD:09333 SNX3 Grd19|MCOPS8|SDP3 sorting nexin 3 protein-coding 561_WT_peak_2633 chr15 101835418 101835588 + 41 NA promoter-TSS (NM_003090) promoter-TSS (NM_003090) -43 NM_003090 6627 Hs.528763 NM_003090 HPRD:04629 SNRPA1 Lea1 small nuclear ribonucleoprotein polypeptide A' protein-coding 561_WT_peak_4975 chr22 50946669 50946839 + 41 NA promoter-TSS (NM_033200) promoter-TSS (NM_033200) 109 NM_001185011 29781 Hs.730607 NM_014551 ENSG00000025770 NCAPH2 CAPH2 non-SMC condensin II complex, subunit H2 protein-coding 561_WT_peak_2288 chr14 75179879 75180074 + 41 NA promoter-TSS (NM_001039479) promoter-TSS (NM_001039479) 126 NM_015962 51077 Hs.579828 NM_015962 HPRD:12633 FCF1 Bka|C14orf111|UTP24 FCF1 rRNA-processing protein protein-coding 561_WT_peak_1385 chr11 66726084 66726344 + 41 NA promoter-TSS (NM_000920) promoter-TSS (NM_000920) -367 NM_000920 5091 Hs.89890 NM_000920 HPRD:02032 PC PCB pyruvate carboxylase protein-coding 561_WT_peak_2631 chr15 101137156 101137326 + 41 NA intron (NM_001040616, intron 1 of 6) LTR43B|LTR|ERV1 5204 NM_001040616 55180 Hs.105633 NM_018148 LINS LINS1|MRT27|WINS1 lines homolog (Drosophila) protein-coding 561_WT_peak_5336 chr3 183003702 183003989 + 41 NA intron (NM_015078, intron 14 of 29) intron (NM_015078, intron 14 of 29) 32813 NM_032047 84002 Hs.718506 NM_032047 HPRD:12511 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 561_WT_peak_3408 chr18 158716 158887 + 41 NA intron (NM_001037334, intron 1 of 14) CpG 318 NM_005151 9097 Hs.464416 NM_005151 HPRD:06279 USP14 TGT ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) protein-coding 561_WT_peak_2710 chr16 17463482 17463712 + 41 NA intron (NM_022166, intron 1 of 11) intron (NM_022166, intron 1 of 11) 101141 NM_022166 64131 Hs.22907 NM_022166 HPRD:12168 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI xylosyltransferase I protein-coding 561_WT_peak_6302 chr6 34725001 34725229 + 41 NA non-coding (NR_029472, exon 1 of 5) non-coding (NR_029472, exon 1 of 5) 244 NM_003093 6631 Hs.1063 NM_003093 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 561_WT_peak_7421 chr9 127631251 127631441 + 41 NA promoter-TSS (NM_030978) promoter-TSS (NM_030978) -138 NM_030978 81873 Hs.132499 NM_030978 HPRD:12490 ARPC5L ARC16-2 actin related protein 2/3 complex, subunit 5-like protein-coding 561_WT_peak_5903 chr5 131808735 131808969 + 41 NA intron (NR_045116, intron 3 of 3) intron (NR_045116, intron 3 of 3) 17613 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 561_WT_peak_3598 chr19 6616083 6616273 + 41 NA Intergenic L1M1|LINE|L1 -25015 NM_001252 970 Hs.501497 NM_001252 HPRD:18515 CD70 CD27L|CD27LG|TNFSF7 CD70 molecule protein-coding 561_WT_peak_1971 chr13 28713075 28713365 + 41 NA promoter-TSS (NR_029383) promoter-TSS (NR_029383) 91 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 561_WT_peak_2407 chr15 23076047 23076428 + 41 NA intron (NM_001142275, intron 1 of 4) intron (NM_001142275, intron 1 of 4) 10199 NM_144599 123606 Hs.511797 NM_144599 HPRD:10487 NIPA1 FSP3|SPG6 non imprinted in Prader-Willi/Angelman syndrome 1 protein-coding 561_WT_peak_681 chr1 203256666 203256932 + 41 NA promoter-TSS (NR_117098) promoter-TSS (NR_117098) -29 NR_117098 100506775 Hs.443859 NR_117097 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 561_WT_peak_4892 chr22 32534048 32534096 + 41 NA Intergenic HERVE_a-int|LTR|ERV1 16108 NR_040114 23782 Hs.581098 NR_040114 ENSG00000234479 AP1B1P1 ADTB1L1|dJ127L4.2 adaptor-related protein complex 1, beta 1 subunit pseudogene 1 pseudo 561_WT_peak_542 chr1 154580416 154580900 + 41 NA promoter-TSS (NM_015840) promoter-TSS (NM_015840) 66 NM_015840 103 Hs.12341 NM_001111 HPRD:07528 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA-specific protein-coding 561_WT_peak_4974 chr22 50908422 50908592 + 41 NA intron (NM_002972, intron 1 of 40) intron (NM_002972, intron 1 of 40) 4957 NM_002972 6305 Hs.589924 NM_002972 HPRD:06788 SBF1 CMT4B3|DENND7A|MTMR5 SET binding factor 1 protein-coding 561_WT_peak_2430 chr15 38987652 38987822 + 41 NA Intergenic Intergenic -1062 NM_207444 400359 Hs.448785 NM_207444 HPRD:13418 C15orf53 - chromosome 15 open reading frame 53 protein-coding 561_WT_peak_4928 chr22 40451581 40451766 + 41 NA intron (NM_001024843, intron 1 of 23) intron (NM_001024843, intron 1 of 23) 10852 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing 6B protein-coding 561_WT_peak_156 chr1 32666221 32666467 + 41 NA intron (NM_001301011, intron 1 of 4) CpG 357 NM_024296 79140 Hs.534482 NM_024296 HPRD:14422 CCDC28B - coiled-coil domain containing 28B protein-coding 561_WT_peak_799 chr1 234735551 234735731 + 41 NA Intergenic CpG 9630 NM_182972 359948 Hs.350268 NM_182972 HPRD:17160 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 561_WT_peak_3759 chr19 39882104 39882416 + 41 NA promoter-TSS (NM_019088) promoter-TSS (NM_019088) 297 NM_017592 55588 Hs.611541 NM_017592 HPRD:13748 MED29 IXL mediator complex subunit 29 protein-coding 561_WT_peak_3695 chr19 19887174 19887388 + 41 NA promoter-TSS (NR_026956) promoter-TSS (NR_026956) -59 NR_026956 284440 Hs.665307 NR_026956 LINC00663 - long intergenic non-protein coding RNA 663 ncRNA 561_WT_peak_2749 chr16 27329757 27329990 + 41 NA intron (NM_001257406, intron 1 of 9) intron (NM_001257406, intron 1 of 9) 4643 NM_001257406 3566 Hs.513457 NM_000418 HPRD:00990 IL4R CD124|IL-4RA|IL4RA interleukin 4 receptor protein-coding 561_WT_peak_6664 chr7 44925178 44925408 + 41 NA promoter-TSS (NM_033224) promoter-TSS (NM_033224) -309 NM_033224 5814 Hs.349150 NM_033224 HPRD:12325 PURB PURBETA purine-rich element binding protein B protein-coding 561_WT_peak_7329 chr9 91450166 91450362 + 41 NA Intergenic Intergenic -89444 NR_036252 100423015 NR_036252 miRBase:MI0015898 MIR4289 - microRNA 4289 ncRNA 561_WT_peak_6332 chr6 43337532 43337791 + 41 NA promoter-TSS (NM_014345) promoter-TSS (NM_014345) -480 NM_014345 24149 Hs.509718 NM_014345 HPRD:11707 ZNF318 TZF|ZFP318 zinc finger protein 318 protein-coding 561_WT_peak_4209 chr2 96658009 96658272 + 41 NA Intergenic CpG -18159 NR_003698 729234 Hs.720108 NR_003698 ENSG00000231584 FAHD2CP - fumarylacetoacetate hydrolase domain containing 2C, pseudogene pseudo 561_WT_peak_1381 chr11 66383671 66383941 + 41 NA promoter-TSS (NM_001198837) promoter-TSS (NM_001198837) -247 NM_001198846 100526737 Hs.523822 NM_001198845 ENSG00000173933 RBM14-RBM4 COAZ RBM14-RBM4 readthrough protein-coding 561_WT_peak_6649 chr7 42951679 42951878 + 41 NA promoter-TSS (NM_024054) promoter-TSS (NM_024054) -89 NM_024054 79020 Hs.698120 NM_024054 HPRD:09861 C7orf25 - chromosome 7 open reading frame 25 protein-coding 561_WT_peak_1009 chr10 64492826 64493065 + 41 NA Intergenic Intergenic -71571 NM_032804 84890 Hs.99821 NM_032804 HPRD:12566 ADO C10orf22 2-aminoethanethiol (cysteamine) dioxygenase protein-coding 561_WT_peak_4100 chr2 64440169 64440556 + 41 NA Intergenic Intergenic -7743 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 561_WT_peak_3940 chr19 59074015 59074220 + 41 NA exon (NM_003422, exon 6 of 6) exon (NM_003422, exon 6 of 6) 3564 NR_027334 100131691 Hs.743767 NR_027334 ENSG00000267858 LOC100131691 - uncharacterized LOC100131691 ncRNA 561_WT_peak_4004 chr2 28113754 28113981 + 41 NA promoter-TSS (NM_022128) promoter-TSS (NM_022128) 114 NR_028308 100302650 Hs.729719 NR_028308 BRE-AS1 - BRE antisense RNA 1 ncRNA 561_WT_peak_7438 chr9 130890401 130890574 + 41 NA promoter-TSS (NR_024425) promoter-TSS (NR_024425) -20 NM_001256335 80142 Hs.495219 NM_025072 HPRD:07458 PTGES2 C9orf15|GBF-1|GBF1|PGES2|mPGES-2 prostaglandin E synthase 2 protein-coding 561_WT_peak_7054 chr8 74206357 74206557 + 40 NA promoter-TSS (NM_172037) promoter-TSS (NM_172037) -380 NM_172037 157506 Hs.244940 NM_172037 HPRD:07605 RDH10 SDR16C4 retinol dehydrogenase 10 (all-trans) protein-coding 561_WT_peak_5210 chr3 113251317 113251505 + 40 NA 5' UTR (NM_017699, exon 1 of 25) 5' UTR (NM_017699, exon 1 of 25) 193 NM_017699 54847 Hs.591291 NM_017699 HPRD:12111 SIDT1 B830021E24Rik|SID-1|SID1 SID1 transmembrane family, member 1 protein-coding 561_WT_peak_5989 chr5 153418202 153418396 + 40 NA promoter-TSS (NM_001242336) promoter-TSS (NM_001242336) 198 NM_018691 10827 Hs.166551 NM_018691 HPRD:12831 FAM114A2 133K02|C5orf3 family with sequence similarity 114, member A2 protein-coding 561_WT_peak_6214 chr6 27775308 27775599 + 40 NA promoter-TSS (NM_003509) promoter-TSS (NM_003509) 256 NM_003519 8340 Hs.137594 NM_003519 HPRD:11898 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1, H2bl protein-coding 561_WT_peak_7429 chr9 129567246 129567482 + 40 NA promoter-TSS (NM_001135776) promoter-TSS (NM_001135776) 79 NM_001135776 23099 Hs.355581 NM_014007 HPRD:08346 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 561_WT_peak_5258 chr3 131100193 131100395 + 40 NA promoter-TSS (NR_038976) promoter-TSS (NR_038976) 25 NR_038976 339874 Hs.718930 NR_038976 ENSG00000250608 LOC339874 - uncharacterized LOC339874 ncRNA 561_WT_peak_337 chr1 100435676 100435846 + 40 NA promoter-TSS (NM_001271685) promoter-TSS (NM_001271685) -231 NM_001271685 23443 Hs.448979 NM_012243 HPRD:10413 SLC35A3 AMRS solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 protein-coding 561_WT_peak_7479 chr9 138392553 138392726 + 40 NA promoter-TSS (NM_001048265) promoter-TSS (NM_001048265) 162 NR_051968 51116 Hs.382044 NM_016034 HPRD:14783 MRPS2 MRP-S2|S2mt mitochondrial ribosomal protein S2 protein-coding 561_WT_peak_1770 chr12 75784988 75785170 + 40 NA promoter-TSS (NM_001286549) promoter-TSS (NM_001286549) 229 NM_001270396 144321 Hs.406728 NM_152436 HPRD:17538 GLIPR1L2 - GLI pathogenesis-related 1 like 2 protein-coding 561_WT_peak_5601 chr4 140477269 140477441 + 40 NA 5' UTR (NM_030648, exon 1 of 8) 5' UTR (NM_030648, exon 1 of 8) 222 NM_030648 80854 Hs.480792 NM_030648 HPRD:16226 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing (lysine methyltransferase) 7 protein-coding 561_WT_peak_7530 chrX 47004510 47004774 + 40 NA promoter-TSS (NM_001204467) promoter-TSS (NM_001204467) 25 NM_001204467 8241 Hs.401509 NM_005676 HPRD:02095 RBM10 DXS8237E|GPATC9|GPATCH9|S1-1|TARPS|ZRANB5 RNA binding motif protein 10 protein-coding 561_WT_peak_202 chr1 42921902 42922144 + 40 NA promoter-TSS (NM_001146192) promoter-TSS (NM_001146192) 11 NM_001287507 79717 Hs.706662 NM_024664 HPRD:07760 PPCS - phosphopantothenoylcysteine synthetase protein-coding 561_WT_peak_3666 chr19 16189540 16189720 + 40 NA intron (NM_003290, intron 1 of 7) intron (NM_003290, intron 1 of 7) 2495 NM_003290 7171 Hs.631618 NM_003290 HPRD:11734 TPM4 HEL-S-108 tropomyosin 4 protein-coding 561_WT_peak_874 chr10 8095348 8095520 + 40 NA promoter-TSS (NR_104329) promoter-TSS (NR_104329) 13 NR_024256 399717 Hs.158992 NM_207423 HPRD:13518 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 561_WT_peak_1473 chr11 107992404 107992595 + 40 NA intron (NM_000019, intron 1 of 11) CpG 241 NM_000019 38 Hs.232375 NM_000019 HPRD:01946 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 561_WT_peak_4216 chr2 97006678 97006767 + 40 NA intron (NM_001281712, intron 1 of 16) L1MC5|LINE|L1 5243 NM_015341 23397 Hs.308045 NM_015341 HPRD:03820 NCAPH BRRN1|CAP-H non-SMC condensin I complex, subunit H protein-coding 561_WT_peak_1536 chr12 74323 74534 + 40 NA Intergenic CpG 6821 NR_026823 677784 Hs.722487 NR_026823 ENSG00000206114 FAM138D F379 family with sequence similarity 138, member D ncRNA 561_WT_peak_1453 chr11 93474093 93474343 + 40 NA promoter-TSS (NM_001286070) promoter-TSS (NM_001286070) 485 NM_024116 79101 Hs.355750 NM_024116 HPRD:14679 TAF1D JOSD3|RAFI41|TAF(I)41|TAFI41 TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa protein-coding 561_WT_peak_4703 chr20 56881848 56882026 + 40 NA intron (NR_003505, intron 2 of 16) MLT1H2|LTR|ERVL-MaLR 2558 NR_003505 55370 Hs.473179 NM_018498 HPRD:17895 PPP4R1L C20orf192|PRO1085 protein phosphatase 4, regulatory subunit 1-like pseudo 561_WT_peak_3216 chr17 44656622 44656965 + 40 NA intron (NM_001288812, intron 1 of 4).2 CpG 295 NM_001288812 51326 Hs.559259 NM_016632 HPRD:17424 ARL17A ARF1P2|ARL17P1 ADP-ribosylation factor-like 17A protein-coding 561_WT_peak_732 chr1 220262995 220263260 + 40 NA promoter-TSS (NM_006085) promoter-TSS (NM_006085) 68 NM_001286149 10380 Hs.406134 NM_006085 HPRD:06814 BPNT1 HEL20|PIP 3'(2'), 5'-bisphosphate nucleotidase 1 protein-coding 561_WT_peak_4643 chr20 43150403 43150573 + 40 NA intron (NM_198941, intron 1 of 10) CpG 238 NM_006811 10955 Hs.272168 NM_006811 HPRD:06201 SERINC3 AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1 serine incorporator 3 protein-coding 561_WT_peak_6008 chr5 159846130 159846340 + 40 NA promoter-TSS (NM_006425) promoter-TSS (NM_006425) -67 NM_006425 10569 Hs.435342 NM_006425 HPRD:12074 SLU7 9G8|hSlu7 SLU7 splicing factor homolog (S. cerevisiae) protein-coding 561_WT_peak_2186 chr14 45722496 45722689 + 40 NA promoter-TSS (NM_018353) promoter-TSS (NM_018353) 13 NM_018353 55320 Hs.732769 NM_018353 HPRD:12629 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 561_WT_peak_3987 chr2 25537549 25537719 + 40 NA intron (NM_175629, intron 1 of 22) intron (NM_175629, intron 1 of 22) 13956 NR_031570 100302246 NR_031570 miRBase:MI0003815 MIR1301 MIRN1301|hsa-mir-1301 microRNA 1301 ncRNA 561_WT_peak_5654 chr4 187112422 187112708 + 40 NA promoter-TSS (NR_046264) promoter-TSS (NR_046264) 79 NR_046264 651430 Hs.727796 NR_046264 FLJ38576 - uncharacterized LOC651430 ncRNA 561_WT_peak_4834 chr22 19842581 19842865 + 40 NA promoter-TSS (NM_024627) promoter-TSS (NM_024627) -261 NM_053004 54584 Hs.105642 NM_053004 HPRD:13591 GNB1L DGCRK3|GY2|WDR14|WDVCF guanine nucleotide binding protein (G protein), beta polypeptide 1-like protein-coding 561_WT_peak_3442 chr18 13137968 13138149 + 40 NA Intergenic MER51A|LTR|ERV1 -80671 NM_181482 753 Hs.731853 NM_004338 HPRD:07358 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 561_WT_peak_7557 chrX 54666147 54666230 + 40 NA Intergenic CpG 109544 NM_019067 54552 Hs.654677 NM_019067 GNL3L - guanine nucleotide binding protein-like 3 (nucleolar)-like protein-coding 561_WT_peak_2844 chr16 53468438 53468614 + 40 NA exon (NM_005611, exon 1 of 22) exon (NM_005611, exon 1 of 22) 175 NM_005611 5934 Hs.513609 NM_005611 HPRD:01576 RBL2 P130|Rb2 retinoblastoma-like 2 protein-coding 561_WT_peak_1774 chr12 76373158 76373279 + 40 NA Intergenic Intergenic 52338 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 561_WT_peak_669 chr1 198638211 198638330 + 40 NA intron (NR_052021, intron 2 of 2) intron (NR_052021, intron 2 of 2) 30172 NM_002838 5788 Hs.654514 NM_002838 HPRD:01050 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase, receptor type, C protein-coding 561_WT_peak_7497 chrX 7895196 7895366 + 40 NA intron (NM_001142389, intron 1 of 6) CpG 194 NM_004650 8228 Hs.264 NM_004650 HPRD:02112 PNPLA4 DXS1283E|GS2|iPLA2eta patatin-like phospholipase domain containing 4 protein-coding 561_WT_peak_988 chr10 50746874 50747073 + 40 NA intron (NM_001277059, intron 1 of 5) CpG 196 NM_001277058 101243544 Hs.49063 NM_001277058 ENSG00000243251 ERCC6-PGBD3 CPFP|CSB-PGBD3 ERCC6-PGBD3 readthrough protein-coding 561_WT_peak_3190 chr17 41392385 41392537 + 40 NA Intergenic Intergenic -11399 NR_047479 100874261 Hs.546898 NR_047479 ENSG00000236383 LINC00854 TMEM106A-AS1 long intergenic non-protein coding RNA 854 ncRNA 561_WT_peak_5868 chr5 107717827 107718037 + 40 NA promoter-TSS (NM_001163315) promoter-TSS (NM_001163315) -133 NM_001163315 64839 Hs.657225 NM_022824 HPRD:10950 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine-rich repeat protein 17 protein-coding 561_WT_peak_6830 chr7 121036457 121036677 + 39 NA promoter-TSS (NM_014888) promoter-TSS (NM_014888) -145 NM_001040020 10447 Hs.434053 NM_014888 HPRD:12270 FAM3C ILEI family with sequence similarity 3, member C protein-coding 561_WT_peak_6115 chr6 17600549 17600867 + 39 NA exon (NM_016255, exon 1 of 5) exon (NM_016255, exon 1 of 5) 190 NM_016255 51439 Hs.95260 NM_016255 HPRD:13316 FAM8A1 AHCP family with sequence similarity 8, member A1 protein-coding 561_WT_peak_6322 chr6 42420975 42421220 + 39 NA Intergenic Intergenic -1308 NM_033502 55809 Hs.485392 NM_018415 HPRD:11647 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 561_WT_peak_862 chr10 6087401 6087571 + 39 NA intron (NM_000417, intron 1 of 7) intron (NM_000417, intron 1 of 7) 16847 NM_000417 3559 Hs.231367 NM_000417 HPRD:00986 IL2RA CD25|IDDM10|IL2R|TCGFR|p55 interleukin 2 receptor, alpha protein-coding 561_WT_peak_1196 chr11 6639947 6640025 + 39 NA intron (NM_000391, intron 3 of 12) intron (NM_000391, intron 3 of 12) 706 NM_000391 1200 Hs.523454 NM_000391 HPRD:06415 TPP1 CLN2|LPIC|SCAR7|TPP-1 tripeptidyl peptidase I protein-coding 561_WT_peak_6306 chr6 36098421 36098635 + 39 NA intron (NM_002754, intron 1 of 11) CpG 267 NM_002754 5603 Hs.178695 NM_002754 HPRD:09113 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 561_WT_peak_2706 chr16 14836301 14836472 + 39 NA Intergenic CpG -8284 NM_001277323 642778 NM_001277323 ENSG00000224712 NPIPA3 - nuclear pore complex interacting protein family, member A3 protein-coding 561_WT_peak_26-2 chr1 2478414 2478708 + 39 NA Intergenic Intergenic -9243 NM_001297605 8764 Hs.512898 NM_003820 HPRD:04122 TNFRSF14 ATAR|CD270|HVEA|HVEM|LIGHTR|TR2 tumor necrosis factor receptor superfamily, member 14 protein-coding 561_WT_peak_7642 chrY 2709495 2709683 + 39 NA promoter-TSS (NM_001008) promoter-TSS (NM_001008) -34 NM_001008 6192 Hs.282376 NM_001008 HPRD:15963 RPS4Y1 RPS4Y|S4 ribosomal protein S4, Y-linked 1 protein-coding 561_WT_peak_4498 chr2 234159960 234160142 + 39 NA promoter-TSS (NM_001190267) promoter-TSS (NM_001190267) -166 NM_001190266 55054 Hs.529322 NM_017974 HPRD:16498 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16-like 1 (S. cerevisiae) protein-coding 561_WT_peak_6532 chr6 157886327 157886554 + 39 NA intron (NM_153746, intron 1 of 8) intron (NM_153746, intron 1 of 8) -63724 NR_037463 100500899 NR_037463 MIR3692 - microRNA 3692 ncRNA 561_WT_peak_2961 chr16 89984371 89984582 + 39 NA 5' UTR (NM_002386, exon 1 of 1) 5' UTR (NM_002386, exon 1 of 1) 189 NM_002386 4157 Hs.513829 NM_002386 HPRD:01118 MC1R CMM5|MSH-R|SHEP2 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) protein-coding 561_WT_peak_2193 chr14 50319342 50319517 + 39 NA exon (NM_004713, exon 1 of 33) exon (NM_004713, exon 1 of 33) 110 NM_004713 9147 Hs.655964 NM_004713 HPRD:08494 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 561_WT_peak_5789 chr5 68485098 68485281 + 39 NA promoter-TSS (NM_022909) promoter-TSS (NM_022909) -186 NM_022909 64946 Hs.631967 NM_022909 HPRD:12029 CENPH - centromere protein H protein-coding 561_WT_peak_811 chr1 236029553 236029778 + 39 NA intron (NM_001301365, intron 1 of 52) CpG 562 NM_000081 1130 Hs.532411 NM_000081 HPRD:06060 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 561_WT_peak_7179 chr8 144629371 144629594 + 39 NA Intergenic MER41B|LTR|ERV1 -5862 NM_015117 23144 Hs.521915 NM_015117 HPRD:15697 ZC3H3 ZC3HDC3 zinc finger CCCH-type containing 3 protein-coding 561_WT_peak_498 chr1 149824720 149824910 + 39 NA TTS (NM_021059).2 TTS (NM_021059).2 634 NM_001005464 333932 Hs.647745 NM_001005464 HIST2H3A H3/n|H3/o histone cluster 2, H3a protein-coding 561_WT_peak_3330 chr17 72199702 72200036 + 39 NA promoter-TSS (NM_000999) promoter-TSS (NM_000999) 74 NM_001035258 6169 Hs.380953 NM_000999 HPRD:16048 RPL38 L38 ribosomal protein L38 protein-coding 561_WT_peak_5597 chr4 140099404 140099685 + 39 NA Intergenic CpG -38914 NM_201999 1998 Hs.634040 NM_006874 HPRD:16856 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74-like factor 2 (ets domain transcription factor) protein-coding 561_WT_peak_1230 chr11 19138716 19138926 + 39 NA exon (NM_019028, exon 1 of 17) exon (NM_019028, exon 1 of 17) 129 NM_001001483 54503 Hs.188569 NM_019028 HPRD:15710 ZDHHC13 HIP14L|HIP3RP zinc finger, DHHC-type containing 13 protein-coding 561_WT_peak_1146 chr10 112620447 112620622 + 39 NA Intergenic Intergenic 10128 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 561_WT_peak_7401 chr9 117150449 117150624 + 39 NA intron (NM_030767, intron 1 of 21) MIR3|SINE|MIR 6149 NM_030767 80709 Hs.494895 NM_030767 HPRD:16148 AKNA - AT-hook transcription factor protein-coding 561_WT_peak_2255 chr14 64855029 64855206 + 39 NA 5' UTR (NM_005956, exon 1 of 28) 5' UTR (NM_005956, exon 1 of 28) 358 NM_005956 4522 Hs.652308 NM_005956 HPRD:01403 MTHFD1 MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase protein-coding 561_WT_peak_1543 chr12 751740 752001 + 39 NA intron (NR_122124, intron 4 of 4) CpG 981 NM_001294346 4815 Hs.655804 NM_016533 HPRD:09530 NINJ2 - ninjurin 2 protein-coding 561_WT_peak_3378 chr17 78695040 78695366 + 39 NA intron (NM_020761, intron 4 of 33) intron (NM_020761, intron 4 of 33) 84229 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 561_WT_peak_797 chr1 234509175 234509364 + 39 NA promoter-TSS (NM_001206641) promoter-TSS (NM_001206641) 55 NM_001206641 388753 Hs.23198 NM_001012985 HPRD:18535 COA6 C1orf31 cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae) protein-coding 561_WT_peak_5296 chr3 156202178 156202345 + 39 NA intron (NM_172160, intron 8 of 13) intron (NM_172160, intron 8 of 13) -37567 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 561_WT_peak_4620 chr20 35233572 35233866 + 39 NA promoter-TSS (NM_001199534) promoter-TSS (NM_001199534) -418 NM_001199534 55969 Hs.584985 NM_018840 HPRD:12761 C20orf24 RIP5 chromosome 20 open reading frame 24 protein-coding 561_WT_peak_5899 chr5 131355992 131356180 + 39 NA Intergenic Intergenic -8325 NM_001205250 23305 Hs.14945 NM_015256 HPRD:09190 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long-chain family member 6 protein-coding 561_WT_peak_3460 chr18 20514100 20514325 + 39 NA TTS (NR_039895) TTS (NR_039895) 373 NM_203291 5932 Hs.546282 NM_002894 HPRD:04990 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 retinoblastoma binding protein 8 protein-coding 561_WT_peak_3498 chr18 46986958 46987150 + 39 NA promoter-TSS (NM_017653) promoter-TSS (NM_017653) 25 NM_017653 54808 Hs.162996 NM_017653 HPRD:08469 DYM DMC|SMC dymeclin protein-coding 561_WT_peak_26 chr1 2478204 2478368 + 39 NA Intergenic CpG -9518 NM_001297605 8764 Hs.512898 NM_003820 HPRD:04122 TNFRSF14 ATAR|CD270|HVEA|HVEM|LIGHTR|TR2 tumor necrosis factor receptor superfamily, member 14 protein-coding 561_WT_peak_3612 chr19 9732187 9732364 + 39 NA promoter-TSS (NM_152289) promoter-TSS (NM_152289) 117 NR_122038 284385 Hs.651747 NM_001242812 ENSG00000267106 ZNF561-AS1 C19orf82 ZNF561 antisense RNA 1 (head to head) ncRNA 561_WT_peak_4701 chr20 56008077 56008278 + 39 NA Intergenic Intergenic 41723 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 561_WT_peak_7123 chr8 120886037 120886390 + 39 NA intron (NM_001283012, intron 1 of 6) CpG 318 NM_022783 64798 Hs.112981 NM_022783 HPRD:13137 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR-interacting protein protein-coding 561_WT_peak_139 chr1 28415192 28415413 + 39 NA promoter-TSS (NM_001282562) promoter-TSS (NM_001282562) -154 NM_001282560 2140 Hs.185774 NM_001990 HPRD:09042 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 561_WT_peak_2240 chr14 61220539 61220796 + 39 NA intron (NM_001177963, intron 1 of 6) MLT1F|LTR|ERVL-MaLR 19208 NM_002431 4331 Hs.509523 NM_002431 HPRD:04042 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT CDK-activating kinase assembly factor 1 protein-coding 561_WT_peak_7192 chr8 145980936 145981107 + 39 NA promoter-TSS (NM_138367) promoter-TSS (NM_138367) -51 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 561_WT_peak_7481 chr9 139001673 139001845 + 39 NA Intergenic Intergenic 8518 NM_001256526 90120 Hs.287411 NM_152833 ENSG00000238227 C9orf69 bA83N9.1 chromosome 9 open reading frame 69 protein-coding 561_WT_peak_5186 chr3 101570133 101570212 + 39 NA intron (NM_031419, intron 1 of 11) intron (NM_031419, intron 1 of 11) 1814 NM_031419 64332 Hs.319171 NM_031419 HPRD:09217 NFKBIZ IKBZ|INAP|MAIL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta protein-coding 561_WT_peak_3385 chr17 79399265 79399435 + 39 NA intron (NM_001291324, intron 1 of 27) HAL1-2a_MD|LINE|L1 18864 NR_036152 100422944 NR_036152 miRBase:MI0014229 MIR3186 - microRNA 3186 ncRNA 561_WT_peak_6836 chr7 127983727 127983897 + 39 NA exon (NM_001166135, exon 1 of 15) exon (NM_001166135, exon 1 of 15) 150 NM_001166135 55131 Hs.274263 NM_018077 HPRD:07668 RBM28 - RNA binding motif protein 28 protein-coding 561_WT_peak_3371 chr17 77812252 77812593 + 39 NA intron (NM_003655, intron 2 of 4) intron (NM_003655, intron 2 of 4) 791 NM_003655 8535 Hs.405046 NM_003655 HPRD:04357 CBX4 NBP16|PC2 chromobox homolog 4 protein-coding 561_WT_peak_7197 chr9 178816 178966 + 39 NA exon (NM_018491, exon 1 of 15) exon (NM_018491, exon 1 of 15) 184 NM_001145355 55871 Hs.531330 NM_018491 HPRD:16686 CBWD1 COBP COBW domain containing 1 protein-coding 561_WT_peak_5741 chr5 52327648 52327838 + 39 NA intron (NR_073106, intron 2 of 29) intron (NR_073106, intron 2 of 29) 42587 NR_073106 3673 Hs.482077 NM_002203 HPRD:01893 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) protein-coding 561_WT_peak_3452 chr18 19180312 19180548 + 39 NA intron (NM_052911, intron 1 of 11) CpG 263 NM_052911 114799 Hs.464733 NM_052911 HPRD:16868 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 561_WT_peak_7052 chr8 71520366 71520804 + 39 NA promoter-TSS (NR_038881) promoter-TSS (NR_038881) 109 NM_014294 23471 Hs.491988 NM_014294 HPRD:05545 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 561_WT_peak_119 chr1 26453044 26453246 + 39 NA Intergenic Intergenic 14877 NM_152835 149420 Hs.468801 NM_152835 HPRD:15110 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 561_WT_peak_675 chr1 200875001 200875179 + 39 NA intron (NM_018265, intron 5 of 9) MIR|SINE|MIR 11141 NM_001142569 55765 Hs.518997 NM_018265 HPRD:07712 C1orf106 - chromosome 1 open reading frame 106 protein-coding 561_WT_peak_5294 chr3 155523754 155523993 + 39 NA intron (NM_173657, intron 1 of 5) CpG 182 NM_173657 285315 Hs.350846 NM_173657 HPRD:08095 C3orf33 AC3-33 chromosome 3 open reading frame 33 protein-coding 561_WT_peak_402 chr1 116961084 116961269 + 39 NA promoter-TSS (NR_027645) promoter-TSS (NR_027645) 5 NR_024126 84852 Hs.664752 NM_032766 ENSG00000203865 ATP1A1-AS1 ATP1A1OS|C1orf203 ATP1A1 antisense RNA 1 ncRNA 561_WT_peak_1300 chr11 59534858 59534946 + 39 NA intron (NM_001178040, intron 1 of 9) intron (NM_001178040, intron 1 of 9) 12370 NM_004177 6809 Hs.180711 NM_004177 HPRD:15985 STX3 STX3A syntaxin 3 protein-coding 561_WT_peak_7002 chr8 42911255 42911577 + 39 NA promoter-TSS (NM_002027) promoter-TSS (NM_002027) -26 NR_033698 2339 Hs.370312 NM_002027 HPRD:00607 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 561_WT_peak_381 chr1 112019635 112019892 + 38 NA intron (NM_001300835, intron 3 of 4) intron (NM_001300835, intron 3 of 4) 3272 NM_001300835 128346 Hs.288010 NM_174896 HPRD:14495 C1orf162 - chromosome 1 open reading frame 162 protein-coding 561_WT_peak_6807 chr7 105662978 105663177 + 38 NA intron (NM_001301161, intron 13 of 17) intron (NM_001301161, intron 13 of 17) 59420 NM_001301161 222256 Hs.150120 NM_152750 HPRD:08042 CDHR3 CDH28 cadherin-related family member 3 protein-coding 561_WT_peak_2551 chr15 75092411 75092684 + 38 NA intron (NM_004383, intron 5 of 12) intron (NM_004383, intron 5 of 12) -11449 NR_039738 100616183 NR_039738 miRBase:MI0016879 MIR4513 - microRNA 4513 ncRNA 561_WT_peak_229 chr1 47800081 47800271 + 38 NA intron (NM_001136140, intron 1 of 4) CpG 707 NR_046395 51727 Hs.731647 NM_016308 HPRD:18258 CMPK1 CK|CMK|CMPK|UMK|UMP-CMPK|UMPK cytidine monophosphate (UMP-CMP) kinase 1, cytosolic protein-coding 561_WT_peak_4105 chr2 64954469 64954499 + 38 NA Intergenic Intergenic -73438 NM_014755 9792 Hs.591569 NM_014755 HPRD:18040 SERTAD2 Sei-2|TRIP-Br2 SERTA domain containing 2 protein-coding 561_WT_peak_3582 chr19 3762436 3762628 + 38 NA promoter-TSS (NM_172251) promoter-TSS (NM_172251) -133 NM_172251 116541 Hs.356578 NM_172251 HPRD:14772 MRPL54 L54mt|MRP-L54 mitochondrial ribosomal protein L54 protein-coding 561_WT_peak_1024 chr10 70360239 70360429 + 38 NA intron (NM_030625, intron 2 of 11) intron (NM_030625, intron 2 of 11) 40217 NM_030625 80312 Hs.567594 NM_030625 HPRD:09694 TET1 CXXC6|LCX|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 561_WT_peak_2250 chr14 62127560 62127683 + 38 NA Intergenic Intergenic -34498 NM_181054 3091 Hs.597216 NM_001530 HPRD:04517 HIF1A HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) protein-coding 561_WT_peak_4232 chr2 99388247 99388650 + 38 NA Intergenic Intergenic -40859 NM_012214 11320 Hs.177576 NM_012214 HPRD:06860 MGAT4A GNT-IV|GNT-IVA|GnT-4a mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A protein-coding 561_WT_peak_6301 chr6 34724589 34724819 + 38 NA promoter-TSS (NR_029472) promoter-TSS (NR_029472) -167 NR_029472 6631 Hs.1063 NM_003093 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 561_WT_peak_6542 chr6 159464634 159464682 + 38 NA exon (NM_054114, exon 4 of 10) exon (NM_054114, exon 4 of 10) -1273 NM_001278733 117289 Hs.529984 NM_054114 HPRD:18143 TAGAP ARHGAP47|IDDM21|TAGAP1 T-cell activation RhoGTPase activating protein protein-coding 561_WT_peak_1412 chr11 74303505 74303900 + 38 NA promoter-TSS (NR_046410) promoter-TSS (NR_046410) 52 NR_046410 10714 Hs.82502 NM_006591 HPRD:11446 POLD3 P66|P68|PPP1R128 polymerase (DNA-directed), delta 3, accessory subunit protein-coding 561_WT_peak_1106 chr10 97802890 97803071 + 38 NA promoter-TSS (NM_001134376) promoter-TSS (NM_001134376) -179 NM_001134375 54619 Hs.596479 NM_019084 HPRD:07710 CCNJ bA690P14.1 cyclin J protein-coding 561_WT_peak_5287 chr3 150421813 150422089 + 38 NA promoter-TSS (NM_152394) promoter-TSS (NM_152394) 189 NR_121674 101928085 Hs.561114 NR_121674 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 561_WT_peak_114 chr1 25566430 25566600 + 38 NA Intergenic CpG 7470 NM_020317 57035 Hs.259412 NM_020317 HPRD:14835 RSRP1 C1orf63|DJ465N24.2.1|NPD014 arginine/serine-rich protein 1 protein-coding 561_WT_peak_2675 chr16 3451399 3451684 + 38 NA promoter-TSS (NM_017810) promoter-TSS (NM_017810) 351 NM_001032292 7727 Hs.155204 NM_003450 HPRD:04876 ZNF174 ZSCAN8 zinc finger protein 174 protein-coding 561_WT_peak_2301 chr14 76448584 76448945 + 38 NA promoter-TSS (NM_003239) promoter-TSS (NM_003239) -399 NM_003239 7043 Hs.592317 NM_003239 TGFB3 ARVD|ARVD1|RNHF|TGF-beta3 transforming growth factor, beta 3 protein-coding 561_WT_peak_888 chr10 12490754 12490924 + 38 NA intron (NM_020397, intron 1 of 9) intron (NM_020397, intron 1 of 9) 99256 NM_153498 57118 Hs.659517 NM_020397 HPRD:06409 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin-dependent protein kinase ID protein-coding 561_WT_peak_4921 chr22 39898336 39898526 + 38 NA 5' UTR (NM_019008, exon 1 of 6) 5' UTR (NM_019008, exon 1 of 6) 147 NM_019008 54471 Hs.728085 NM_019008 HPRD:13371 MIEF1 HSU79252|MID51|SMCR7L|dJ1104E15.3 mitochondrial elongation factor 1 protein-coding 561_WT_peak_843 chr10 3110530 3110734 + 38 NA promoter-TSS (NM_001242339) promoter-TSS (NM_001242339) -187 NM_001242339 5214 Hs.26010 NM_002627 HPRD:01384 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 561_WT_peak_503 chr1 149871594 149871854 + 38 NA exon (NM_016074, exon 2 of 2) exon (NM_016074, exon 2 of 2) 569 NM_016074 51027 Hs.13880 NM_016074 HPRD:13036 BOLA1 - bolA family member 1 protein-coding 561_WT_peak_2665 chr16 3105347 3105411 + 38 NA intron (NR_123723, intron 3 of 4) intron (NR_123723, intron 3 of 4) 3992 NR_123723 100507419 Hs.312579 NR_123723 LOC100507419 - uncharacterized LOC100507419 ncRNA 561_WT_peak_3734 chr19 36390678 36390850 + 38 NA intron (NM_139239, intron 1 of 11) CpG 788 NM_139239 84807 Hs.466531 NM_139239 HPRD:18140 NFKBID IkappaBNS|TA-NFKBH nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta protein-coding 561_WT_peak_5893 chr5 130588798 130588930 + 38 NA Intergenic Intergenic -10838 NM_001038702 56990 Hs.508829 NM_020240 HPRD:16695 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 561_WT_peak_7610 chrX 128911357 128911527 + 38 NA Intergenic Intergenic -2450 NM_018990 54440 Hs.61469 NM_018990 HPRD:02342 SASH3 753P9|CXorf9|HACS2|SH3D6C|SLY SAM and SH3 domain containing 3 protein-coding 561_WT_peak_125 chr1 27019544 27019846 + 38 NA Intergenic Intergenic -2827 NM_006015 8289 Hs.468972 NM_006015 HPRD:04319 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT rich interactive domain 1A (SWI-like) protein-coding 561_WT_peak_1347 chr11 65188712 65188751 + 38 NA Intergenic Intergenic -1538 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 561_WT_peak_4843 chr22 21213210 21213445 + 38 NA promoter-TSS (NM_058004) promoter-TSS (NM_058004) 35 NM_004782 9342 Hs.108002 NM_004782 HPRD:11968 SNAP29 CEDNIK|SNAP-29 synaptosomal-associated protein, 29kDa protein-coding 561_WT_peak_1470 chr11 107436344 107436600 + 38 NA promoter-TSS (NM_138775) promoter-TSS (NM_138775) -11 NM_001301010 91801 Hs.503763 NM_138775 HPRD:14287 ALKBH8 ABH8 alkB, alkylation repair homolog 8 (E. coli) protein-coding 561_WT_peak_7543 chrX 48815515 48815658 + 38 NA promoter-TSS (NM_001136158) promoter-TSS (NM_001136158) 62 NM_001136159 55593 Hs.496098 NM_017602 HPRD:06488 OTUD5 DUBA OTU deubiquitinase 5 protein-coding 561_WT_peak_5133 chr3 57541731 57541982 + 38 NA promoter-TSS (NM_177966) promoter-TSS (NM_177966) -125 NM_177966 201626 Hs.572993 NM_177966 PDE12 2'-PDE phosphodiesterase 12 protein-coding 561_WT_peak_6025 chr5 174944820 174945082 + 38 NA intron (NM_022754, intron 8 of 10) intron (NM_022754, intron 8 of 10) 39437 NM_022754 94081 Hs.369440 NM_022754 HPRD:18044 SFXN1 - sideroflexin 1 protein-coding 561_WT_peak_6140 chr6 26043662 26043891 + 38 NA exon (NM_021062, exon 1 of 1) exon (NM_021062, exon 1 of 1) 109 NM_021062 3018 Hs.553494 NM_021062 HPRD:07536 HIST1H2BB H2B.1|H2B/f|H2BFF histone cluster 1, H2bb protein-coding 561_WT_peak_3639 chr19 12903784 12903954 + 38 NA 3' UTR (NM_002229, exon 1 of 1) 3' UTR (NM_002229, exon 1 of 1) 1559 NM_002229 3726 Hs.25292 NM_002229 HPRD:01303 JUNB AP-1 jun B proto-oncogene protein-coding 561_WT_peak_4797 chr21 38936611 38936851 + 38 NA Intergenic Intergenic 144129 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 561_WT_peak_2299 chr14 75963548 75963676 + 38 NA Intergenic Intergenic -25172 NM_006399 10538 Hs.509964 NM_006399 HPRD:09820 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper transcription factor, ATF-like protein-coding 561_WT_peak_3675 chr19 17416178 17416553 + 38 NA promoter-TSS (NM_023937) promoter-TSS (NM_023937) -112 NM_023937 64981 Hs.515242 NM_023937 HPRD:14754 MRPL34 L34mt mitochondrial ribosomal protein L34 protein-coding 561_WT_peak_5928 chr5 134209763 134209821 + 37 NA 5' UTR (NM_024715, exon 1 of 5) 5' UTR (NM_024715, exon 1 of 5) 332 NM_024715 79770 Hs.741304 NM_024715 HPRD:08658 TXNDC15 C5orf14|UNQ335 thioredoxin domain containing 15 protein-coding 561_WT_peak_600 chr1 165738080 165738285 + 37 NA promoter-TSS (NM_001256164) promoter-TSS (NM_001256164) 16 NR_125374 100147773 Hs.633824 NR_125374 LOC100147773 - uncharacterized LOC100147773 ncRNA 561_WT_peak_4277 chr2 120124114 120124335 + 37 NA promoter-TSS (NM_001282636) promoter-TSS (NM_001282636) 34 NM_001017927 130355 Hs.99488 NM_001017927 HPRD:18547 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 561_WT_peak_4251 chr2 111506142 111506331 + 37 NA intron (NM_001142807, intron 1 of 17) intron (NM_001142807, intron 1 of 17) 16086 NM_001142807 55289 Hs.253320 NM_018308 HPRD:12418 ACOXL - acyl-CoA oxidase-like protein-coding 561_WT_peak_7293 chr9 73027089 73027410 + 37 NA intron (NM_001206, intron 1 of 1) intron (NM_001206, intron 1 of 1) 2324 NM_001206 687 Hs.150557 NM_001206 HPRD:04211 KLF9 BTEB|BTEB1 Kruppel-like factor 9 protein-coding 561_WT_peak_1827 chr12 101801723 101801936 + 37 NA promoter-TSS (NM_001301068) promoter-TSS (NM_001301068) -231 NM_001301068 400 Hs.372616 NM_001177 HPRD:04574 ARL1 ARFL1 ADP-ribosylation factor-like 1 protein-coding 561_WT_peak_3129 chr17 33905699 33905905 + 37 NA promoter-TSS (NM_000286) promoter-TSS (NM_000286) -146 NM_000286 5193 Hs.591190 NM_000286 HPRD:03455 PEX12 PAF-3|PBD3A peroxisomal biogenesis factor 12 protein-coding 561_WT_peak_282 chr1 67772990 67773247 + 37 NA promoter-TSS (NM_001258215) promoter-TSS (NM_001258215) 71 NM_001258215 3595 Hs.479347 NM_001559 HPRD:03383 IL12RB2 - interleukin 12 receptor, beta 2 protein-coding 561_WT_peak_1185 chr11 1874169 1874349 + 37 NA promoter-TSS (NM_002339) promoter-TSS (NM_002339) 59 NM_002339 4046 Hs.56729 NM_002339 HPRD:01083 LSP1 WP34|pp52 lymphocyte-specific protein 1 protein-coding 561_WT_peak_6484 chr6 135945706 135945873 + 37 NA intron (NR_026805, intron 1 of 3) intron (NR_026805, intron 1 of 3) 126850 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 561_WT_peak_5771 chr5 64399062 64399336 + 37 NA Intergenic CpG 334454 NM_001297644 10283 Hs.371372 NM_005869 HPRD:11541 CWC27 NY-CO-10|SDCCAG10 CWC27 spliceosome-associated protein homolog (S. cerevisiae) protein-coding 561_WT_peak_3532 chr18 74766871 74767369 + 37 NA intron (NM_001025101, intron 3 of 8) intron (NM_001025101, intron 3 of 8) -38065 NM_001025092 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 561_WT_peak_5535 chr4 84405823 84406120 + 37 NA intron (NM_139076, intron 1 of 8) CpG 319 NM_139076 84142 Hs.334772 NM_139076 HPRD:08584 FAM175A ABRA1|CCDC98 family with sequence similarity 175, member A protein-coding 561_WT_peak_5523 chr4 83821958 83822128 + 37 NA promoter-TSS (NR_034076) promoter-TSS (NR_034076) 26 NR_034077 100499177 Hs.728916 NR_034075 ENSG00000251022 THAP9-AS1 - THAP9 antisense RNA 1 ncRNA 561_WT_peak_896 chr10 17045207 17045383 + 37 NA intron (NM_001081, intron 28 of 66) intron (NM_001081, intron 28 of 66) 126521 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 561_WT_peak_5522 chr4 83812194 83812648 + 37 NA promoter-TSS (NM_016211) promoter-TSS (NM_016211) -2 NM_014933 22872 Hs.370024 NM_014933 HPRD:15314 SEC31A ABP125|ABP130|HSPC334|SEC31L1 SEC31 homolog A (S. cerevisiae) protein-coding 561_WT_peak_5987 chr5 150473700 150473853 + 37 NA Intergenic Intergenic -6555 NM_001252390 10318 Hs.355141 NM_006058 HPRD:09216 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 561_WT_peak_1208 chr11 10772733 10772977 + 37 NA promoter-TSS (NM_014633) promoter-TSS (NM_014633) 44 NM_014633 9646 Hs.725151 NM_014633 HPRD:06717 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9, Paf1/RNA polymerase II complex component protein-coding 561_WT_peak_32 chr1 6453853 6454042 + 37 NA promoter-TSS (NM_007274) promoter-TSS (NM_007274) -121 NM_007274 11332 Hs.126137 NM_007274 HPRD:12517 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 561_WT_peak_2101 chr13 111805606 111805733 + 36 NA promoter-TSS (NM_003899) promoter-TSS (NM_003899) 255 NR_120398 101060553 Hs.662213 NR_120398 LOC101060553 - uncharacterized LOC101060553 ncRNA 561_WT_peak_4553 chr20 4666792 4666912 + 36 NA promoter-TSS (NM_001080123) promoter-TSS (NM_001080123) 55 NM_000311 5621 Hs.472010 NM_000311 HPRD:01453 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 561_WT_peak_6500 chr6 143832633 143832841 + 36 NA exon (NM_032020, exon 1 of 7) exon (NM_032020, exon 1 of 7) 283 NM_032020 2519 Hs.17680 NM_032020 HPRD:00649 FUCA2 dJ20N2.5 fucosidase, alpha-L- 2, plasma protein-coding 561_WT_peak_7426 chr9 128003992 128004181 + 36 NA promoter-TSS (NM_005347) promoter-TSS (NM_005347) -420 NM_005347 3309 Hs.743241 NM_005347 HPRD:00682 HSPA5 BIP|GRP78|HEL-S-89n|MIF2 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) protein-coding 561_WT_peak_7467 chr9 134955149 134955349 + 36 NA promoter-TSS (NM_004269) promoter-TSS (NM_004269) 25 NM_001253882 9442 Hs.374262 NM_004269 HPRD:05438 MED27 CRAP34|CRSP34|CRSP8|TRAP37 mediator complex subunit 27 protein-coding 561_WT_peak_3176 chr17 40021142 40021334 + 36 NA exon (NM_018143, exon 1 of 2) exon (NM_018143, exon 1 of 2) 391 NM_018143 55175 Hs.592134 NM_018143 HPRD:13924 KLHL11 - kelch-like family member 11 protein-coding 561_WT_peak_2550 chr15 74392406 74392578 + 36 NA Intergenic CpG -17601 NM_001038640 342096 Hs.546408 NM_001038640 ENSG00000159289 GOLGA6A GLP|GOLGA6 golgin A6 family, member A protein-coding 561_WT_peak_5492 chr4 57301353 57301719 + 36 NA promoter-TSS (NM_006452) promoter-TSS (NM_006452) 266 NM_002703 5471 Hs.331420 NM_002703 HPRD:01402 PPAT ATASE|GPAT|PRAT phosphoribosyl pyrophosphate amidotransferase protein-coding 561_WT_peak_879 chr10 8446767 8446825 + 36 NA Intergenic Intergenic -136528 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 561_WT_peak_6046 chr5 179125974 179126293 + 36 NA intron (NM_001746, intron 1 of 14) CpG 203 NM_001746 821 Hs.567968 NM_001746 HPRD:00252 CANX CNX|IP90|P90 calnexin protein-coding 561_WT_peak_1856 chr12 111051690 111051860 + 36 NA promoter-TSS (NM_001173975) promoter-TSS (NM_001173975) -57 NM_001173976 79600 Hs.211511 NM_024549 HPRD:08636 TCTN1 JBTS13|TECT1 tectonic family member 1 protein-coding 561_WT_peak_260 chr1 61797949 61798137 + 36 NA intron (NM_001145511, intron 3 of 10) intron (NM_001145511, intron 3 of 10) -78853 NR_104180 645030 Hs.632410 NR_104180 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 561_WT_peak_2969 chr17 1419608 1419781 + 36 NA promoter-TSS (NR_028514) promoter-TSS (NR_028514) 488 NM_016532 51763 Hs.632238 NM_016532 HPRD:08489 INPP5K PPS|SKIP inositol polyphosphate-5-phosphatase K protein-coding 561_WT_peak_7169 chr8 135844708 135844879 + 36 NA Intergenic CpG -17385 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 561_WT_peak_1153 chr10 119135065 119135392 + 36 NA promoter-TSS (NM_173791) promoter-TSS (NM_173791) -291 NM_173791 118987 Hs.501149 NM_173791 PDZD8 PDZK8|bA129M16.2 PDZ domain containing 8 protein-coding 561_WT_peak_2072 chr13 77565690 77565984 + 36 NA promoter-TSS (NM_006493) promoter-TSS (NM_006493) -222 NM_006493 1203 Hs.30213 NM_006493 CLN5 NCL ceroid-lipofuscinosis, neuronal 5 protein-coding 561_WT_peak_1213 chr11 13484692 13484862 + 36 NA promoter-TSS (NM_001297741) promoter-TSS (NM_001297741) 67 NM_032320 84280 Hs.332382 NM_032320 HPRD:17045 BTBD10 GMRP-1|GMRP1 BTB (POZ) domain containing 10 protein-coding 561_WT_peak_7321 chr9 86571103 86571524 + 36 NA exon (NM_032307, exon 1 of 4) exon (NM_032307, exon 1 of 4) 350 NM_032307 84267 Hs.208914 NM_032307 HPRD:12969 C9orf64 - chromosome 9 open reading frame 64 protein-coding 561_WT_peak_7098 chr8 103580214 103580478 + 36 NA Intergenic Intergenic 16498 NM_024410 4956 Hs.159274 NM_024410 HPRD:01687 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 561_WT_peak_1989 chr13 33721140 33721329 + 36 NA intron (NM_178006, intron 3 of 13) L1MC1|LINE|L1 38982 NM_001243466 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 561_WT_peak_5602 chr4 140477993 140478166 + 36 NA promoter-TSS (NM_030648) promoter-TSS (NM_030648) -502 NM_030648 80854 Hs.480792 NM_030648 HPRD:16226 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing (lysine methyltransferase) 7 protein-coding 561_WT_peak_677 chr1 201476364 201476534 + 36 NA promoter-TSS (NM_001193571) promoter-TSS (NM_001193571) -62 NM_001193570 1465 Hs.108080 NM_004078 HPRD:00470 CSRP1 CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141 cysteine and glycine-rich protein 1 protein-coding 561_WT_peak_2895 chr16 70834567 70834653 + 36 NA intron (NM_018052, intron 1 of 18) intron (NM_018052, intron 1 of 18) 451 NM_018052 55697 Hs.445061 NM_018052 HPRD:07660 VAC14 ArPIKfyve|TAX1BP2|TRX Vac14 homolog (S. cerevisiae) protein-coding 561_WT_peak_2947 chr16 88767129 88767299 + 36 NA intron (NM_001171816, intron 2 of 5) intron (NM_001171816, intron 2 of 5) 2811 NM_001171816 115992 Hs.513804 NM_178841 HPRD:15260 RNF166 - ring finger protein 166 protein-coding 561_WT_peak_1406 chr11 72854135 72854265 + 36 NA Intergenic Intergenic -1057 NM_014824 9873 Hs.744959 NM_014824 HPRD:13321 FCHSD2 NWK|SH3MD3 FCH and double SH3 domains 2 protein-coding 561_WT_peak_5269 chr3 136471080 136471250 + 36 NA promoter-TSS (NM_005862) promoter-TSS (NM_005862) 80 NM_005862 10274 Hs.412586 NM_005862 HPRD:05076 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 561_WT_peak_5335 chr3 182513135 182513316 + 36 NA intron (NM_014616, intron 1 of 29) intron (NM_014616, intron 1 of 29) 1934 NM_014616 23200 Hs.478429 NM_014616 HPRD:10432 ATP11B ATPIF|ATPIR ATPase, class VI, type 11B protein-coding 561_WT_peak_5118 chr3 51720678 51720848 + 36 NA intron (NM_001243725, intron 3 of 4) intron (NM_001243725, intron 3 of 4) 15120 NR_103463 51368 Hs.517864 NM_015926 HPRD:15492 TEX264 ZSIG11 testis expressed 264 protein-coding 561_WT_peak_7072 chr8 96112518 96112666 + 36 NA Intergenic Intergenic -27368 NR_037484 100500907 NR_037484 miRBase:MI0016426 MIR3150B - microRNA 3150b ncRNA 561_WT_peak_7480 chr9 138800233 138800403 + 36 NA Intergenic CpG-27310 -1313 NM_015447 157922 Hs.522493 NM_015447 HPRD:13001 CAMSAP1 PRO2405|bA100C15.1 calmodulin regulated spectrin-associated protein 1 protein-coding 561_WT_peak_3372 chr17 78121241 78121458 + 36 NA promoter-TSS (NM_014740) promoter-TSS (NM_014740) -367 NM_014740 9775 Hs.389649 NM_014740 HPRD:06482 EIF4A3 DDX48|MUK34|NMP265|NUK34|RCPS|eIF4AIII eukaryotic translation initiation factor 4A3 protein-coding 561_WT_peak_7257 chr9 37464991 37465284 + 36 NA intron (NM_014872, intron 1 of 1) CpG 270 NM_014872 9925 Hs.161276 NM_014872 HPRD:08829 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 561_WT_peak_3033 chr17 8066059 8066229 + 36 NA intron (NM_014232, intron 1 of 4) CpG 149 NM_014232 6844 Hs.25348 NM_014232 HPRD:01717 VAMP2 SYB2|VAMP-2 vesicle-associated membrane protein 2 (synaptobrevin 2) protein-coding 561_WT_peak_1617 chr12 13254359 13254526 + 36 NA intron (NM_001206842, intron 1 of 5) CpG 2188 NM_001080555 83445 Hs.240053 NM_031289 HPRD:11015 GSG1 - germ cell associated 1 protein-coding 561_WT_peak_2327 chr14 90864450 90864659 + 36 NA intron (NM_006888, intron 1 of 5) CpG 1227 NM_006888 801 Hs.282410 NM_006888 HPRD:00241 CALM1 CALML2|CAMI|CPVT4|DD132|PHKD|caM calmodulin 1 (phosphorylase kinase, delta) protein-coding 561_WT_peak_3629 chr19 11925073 11925272 + 36 NA promoter-TSS (NM_152357) promoter-TSS (NM_152357) 65 NM_152357 126070 Hs.418192 NM_152357 HPRD:11718 ZNF440 - zinc finger protein 440 protein-coding 561_WT_peak_3285 chr17 58603122 58603311 + 36 NA exon (NM_006380, exon 1 of 13) exon (NM_006380, exon 1 of 13) 385 NM_006380 10513 Hs.84084 NM_006380 HPRD:05616 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 protein-coding 561_WT_peak_2416 chr15 31556413 31556595 + 36 NA Intergenic Intergenic -33454 NM_001243538 283710 Hs.591097 NM_001243538 LOC283710 - uncharacterized LOC283710 protein-coding 561_WT_peak_5308 chr3 160283000 160283372 + 36 NA 5' UTR (NM_002268, exon 1 of 17) 5' UTR (NM_002268, exon 1 of 17) 190 NM_002268 3840 Hs.467866 NM_002268 HPRD:04275 KPNA4 IPOA3|QIP1|SRP3 karyopherin alpha 4 (importin alpha 3) protein-coding 561_WT_peak_1256 chr11 36531654 36531827 + 36 NA 5' UTR (NM_004620, exon 1 of 7) 5' UTR (NM_004620, exon 1 of 7) 123 NM_145803 7189 Hs.444172 NM_004620 TRAF6 MGC:3310|RNF85 TNF receptor-associated factor 6, E3 ubiquitin protein ligase protein-coding 561_WT_peak_6469 chr6 130536760 130536902 + 36 NA intron (NM_001017373, intron 2 of 11) intron (NM_001017373, intron 2 of 11) 199 NM_001277185 154075 Hs.440508 NM_152552 HPRD:11530 SAMD3 - sterile alpha motif domain containing 3 protein-coding 561_WT_peak_643 chr1 181057693 181058031 + 36 NA 5' UTR (NM_016545, exon 1 of 1) 5' UTR (NM_016545, exon 1 of 1) 224 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 561_WT_peak_3603 chr19 7702070 7702254 + 36 NA intron (NM_001272034, intron 1 of 18) CpG 175 NM_001127396 6813 Hs.515104 NM_006949 HPRD:03423 STXBP2 FHL5|Hunc18b|MUNC18-2|UNC18-2|UNC18B|pp10122 syntaxin binding protein 2 protein-coding 561_WT_peak_1654 chr12 39861352 39861589 + 36 NA Intergenic Tigger1|DNA|TcMar-Tigger -24278 NM_001173465 55605 Hs.374201 NM_017641 HPRD:10506 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 561_WT_peak_7085 chr8 101514945 101515154 + 36 NA Intergenic Intergenic 56890 NM_001270378 157567 Hs.530199 NM_198401 HPRD:14103 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 561_WT_peak_377 chr1 111746464 111746775 + 36 NA intron (NM_001271833, intron 1 of 11) CpG 541 NM_001271833 79961 Hs.557850 NM_024901 DENND2D - DENN/MADD domain containing 2D protein-coding 561_WT_peak_5072 chr3 42623698 42623992 + 36 NA promoter-TSS (NM_001201584) promoter-TSS (NM_001201584) -325 NM_004206 9117 Hs.445892 NM_004206 HPRD:04938 SEC22C SEC22L3 SEC22 vesicle trafficking protein homolog C (S. cerevisiae) protein-coding 561_WT_peak_537 chr1 154130429 154130590 + 36 NA 3' UTR (NM_001043352, exon 8 of 8) 3' UTR (NM_001043352, exon 8 of 8) -2917 NM_207308 91181 Hs.67639 NM_207308 HPRD:14852 NUP210L - nucleoporin 210kDa-like protein-coding 561_WT_peak_2097 chr13 111364971 111365222 + 36 NA promoter-TSS (NM_198219) promoter-TSS (NM_198219) 126 NM_198217 3621 Hs.46700 NM_005537 HPRD:03337 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family, member 1 protein-coding 561_WT_peak_5735 chr5 49736989 49737443 + 36 NA promoter-TSS (NM_198449) promoter-TSS (NM_198449) 18 NM_198449 133418 Hs.561411 NM_198449 HPRD:13271 EMB GP70 embigin protein-coding 561_WT_peak_4535 chr20 388819 389100 + 36 NA 5' UTR (NM_006462, exon 1 of 11) 5' UTR (NM_006462, exon 1 of 11) 250 NM_031229 10616 Hs.247280 NM_006462 HPRD:16643 RBCK1 C20orf18|HOIL-1|HOIL1|PBMEI|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4 RanBP-type and C3HC4-type zinc finger containing 1 protein-coding 561_WT_peak_5845 chr5 86636618 86636821 + 36 NA intron (NM_002890, intron 5 of 24) intron (NM_002890, intron 5 of 24) 71978 NM_022650 5921 Hs.664080 NM_002890 HPRD:00745 RASA1 CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP RAS p21 protein activator (GTPase activating protein) 1 protein-coding 561_WT_peak_5146 chr3 69062775 69063015 + 36 NA non-coding (NR_103826, exon 1 of 16) non-coding (NR_103826, exon 1 of 16) 150 NM_001278689 285203 Hs.518059 NM_173654 HPRD:12435 EOGT AER61|AOS4|C3orf64|EOGT1 EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 561_WT_peak_2064 chr13 53024699 53024891 + 36 NA promoter-TSS (NM_016075) promoter-TSS (NM_016075) 18 NM_001282168 51028 Hs.109520 NM_016075 HPRD:12620 VPS36 C13orf9|EAP45 vacuolar protein sorting 36 homolog (S. cerevisiae) protein-coding 561_WT_peak_6700 chr7 72300052 72300222 + 36 NA non-coding (NR_024111, exon 1 of 4) non-coding (NR_024111, exon 1 of 4) 185 NR_024109 155370 Hs.585053 NR_001588 ENSG00000225648 SBDSP1 SBDSP Shwachman-Bodian-Diamond syndrome pseudogene 1 pseudo 561_WT_peak_6472 chr6 131521013 131521238 + 35 NA intron (NM_016377, intron 6 of 7) intron (NM_016377, intron 6 of 7) -50174 NM_138633 9465 Hs.486483 NM_004842 HPRD:16065 AKAP7 AKAP15|AKAP18 A kinase (PRKA) anchor protein 7 protein-coding 561_WT_peak_97 chr1 22366390 22366581 + 35 NA Intergenic Intergenic -12635 NM_001791 998 Hs.467637 NM_001791 HPRD:00309 CDC42 CDC42Hs|G25K cell division cycle 42 protein-coding 561_WT_peak_2005 chr13 41579163 41579357 + 35 NA intron (NM_172373, intron 1 of 8) intron (NM_172373, intron 1 of 8) 14248 NM_172373 1997 Hs.135646 NM_172373 HPRD:01808 ELF1 - E74-like factor 1 (ets domain transcription factor) protein-coding 561_WT_peak_4257 chr2 112264607 112264796 + 35 NA Intergenic Intergenic -12009 NR_024373 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-1HG AGD2|LINC00978 MIR4435-1 host gene (non-protein coding) ncRNA 561_WT_peak_3023 chr17 7745664 7745848 + 35 NA intron (NM_001080424, intron 1 of 21) CpG 2521 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine (K)-specific demethylase 6B protein-coding 561_WT_peak_1513 chr11 122933020 122933234 + 35 NA promoter-TSS (NM_006597) promoter-TSS (NM_006597) -84 NM_153201 3312 Hs.180414 NM_006597 HPRD:07205 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock 70kDa protein 8 protein-coding 561_WT_peak_4363 chr2 172016852 172017069 + 35 NA 5' UTR (NM_012290, exon 1 of 21) 5' UTR (NM_012290, exon 1 of 21) 450 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled-like kinase 1 protein-coding 561_WT_peak_3517 chr18 60173386 60173653 + 35 NA Intergenic Intergenic -17139 NM_017742 54877 Hs.114191 NM_017742 HPRD:11696 ZCCHC2 C18orf49 zinc finger, CCHC domain containing 2 protein-coding 561_WT_peak_2066 chr13 60970206 60970390 + 35 NA promoter-TSS (NM_001146071) promoter-TSS (NM_001146071) -293 NM_030794 81550 Hs.525061 NM_030794 HPRD:11625 TDRD3 - tudor domain containing 3 protein-coding 561_WT_peak_509 chr1 150241141 150241376 + 35 NA non-coding (NR_045034, exon 1 of 4) non-coding (NR_045034, exon 1 of 4) 351 NM_001243771 51107 Hs.108408 NM_016022 ENSG00000117362 APH1A 6530402N02Rik|APH-1|APH-1A|CGI-78 APH1A gamma secretase subunit protein-coding 561_WT_peak_6960 chr8 29265955 29266104 + 35 NA Intergenic Intergenic -57762 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 561_WT_peak_5706 chr5 40679487 40679787 + 35 NA promoter-TSS (NM_000958) promoter-TSS (NM_000958) -395 NM_000958 5734 Hs.199248 NM_000958 HPRD:03350 PTGER4 EP4|EP4R prostaglandin E receptor 4 (subtype EP4) protein-coding 561_WT_peak_6303 chr6 35227529 35227795 + 35 NA intron (NM_003427, intron 1 of 13) CpG 171 NM_001292032 7629 Hs.388024 NM_003427 HPRD:01929 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 561_WT_peak_2393 chr14 106467347 106467531 + 35 NA Intergenic Intergenic -29081 NR_002224 8755 Hs.662288 NR_002224 ENSG00000233988 ADAM6 C14orf96|tMDCIV ADAM metallopeptidase domain 6, pseudogene pseudo 561_WT_peak_5671 chr5 14595384 14595472 + 35 NA intron (NM_019018, intron 1 of 7) intron (NM_019018, intron 1 of 7) 13537 NM_019018 54491 Hs.155085 NM_019018 FAM105A NET20 family with sequence similarity 105, member A protein-coding 561_WT_peak_5062 chr3 39447745 39447785 + 35 NA promoter-TSS (NM_002295) promoter-TSS (NM_002295) -439 NM_002295 3921 Hs.449909 NM_002295 HPRD:01038 RPSA 37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40 ribosomal protein SA protein-coding 561_WT_peak_6047 chr5 179248685 179248728 + 35 NA intron (NM_003900, intron 1 of 7) CpG 864 NM_003900 8878 Hs.724025 NM_003900 HPRD:03319 SQSTM1 A170|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 561_WT_peak_6339 chr6 44280849 44281245 + 35 NA promoter-TSS (NM_020745) promoter-TSS (NM_020745) 16 NM_020745 57505 Hs.158381 NM_020745 HPRD:12397 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 561_WT_peak_6824 chr7 115785553 115785781 + 35 NA Intergenic Intergenic -64880 NM_015641 26136 Hs.592286 NM_015641 HPRD:05833 TES TESS|TESS-2 testis derived transcript (3 LIM domains) protein-coding 561_WT_peak_93 chr1 20834732 20834869 + 35 NA promoter-TSS (NM_024544) promoter-TSS (NM_024544) -126 NM_024544 79594 Hs.10101 NM_024544 HPRD:07799 MUL1 C1orf166|GIDE|MAPL|MULAN|RNF218 mitochondrial E3 ubiquitin protein ligase 1 protein-coding 561_WT_peak_7064 chr8 90741407 90741547 + 34 NA Intergenic Intergenic -28498 NM_003821 8767 Hs.103755 NM_003821 HPRD:04585 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor-interacting serine-threonine kinase 2 protein-coding 561_WT_peak_1140 chr10 106098544 106098738 + 34 NA promoter-TSS (NM_001272013) promoter-TSS (NM_001272013) -390 NM_001272013 85450 Hs.523252 NM_033397 ITPRIP DANGER|KIAA1754|bA127L20|bA127L20.2 inositol 1,4,5-trisphosphate receptor interacting protein protein-coding 561_WT_peak_7635 chrY 1274847 1275058 + 34 NA intron (NM_001012288, intron 2 of 4).2 intron (NM_001012288, intron 2 of 4).2 6664 NM_001012288 64109 Hs.287729 NM_022148 HPRD:02288 CRLF2 CRL2|CRLF2Y|TSLPR cytokine receptor-like factor 2 protein-coding 561_WT_peak_3501 chr18 47339560 47339765 + 34 NA promoter-TSS (NR_117096) promoter-TSS (NR_117096) 589 NM_006111 10449 Hs.200136 NM_006111 HPRD:10380 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 561_WT_peak_3127 chr17 33668606 33668859 + 34 NA Intergenic MER11D|LTR|ERVK 31988 NM_001104589 91607 Hs.745059 NM_152270 HPRD:08178 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 561_WT_peak_3003 chr17 5487890 5488060 + 34 NA promoter-TSS (NM_033004) promoter-TSS (NM_033004) -143 NM_033007 22861 Hs.652273 NM_014922 HPRD:07364 NLRP1 CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family, pyrin domain containing 1 protein-coding 561_WT_peak_4001 chr2 27603621 27603967 + 34 NA promoter-TSS (NM_144631) promoter-TSS (NM_144631) -183 NM_144631 130557 Hs.515872 NM_144631 HPRD:15813 ZNF513 HMFT0656|RP58 zinc finger protein 513 protein-coding 561_WT_peak_3715 chr19 32836536 32836906 + 34 NA intron (NM_014910, intron 1 of 5) CpG 207 NM_001136156 22847 Hs.205392 NM_014910 HPRD:11722 ZNF507 - zinc finger protein 507 protein-coding 561_WT_peak_3450 chr18 18691270 18691463 + 34 NA 5' UTR (NM_005406, exon 1 of 33) 5' UTR (NM_005406, exon 1 of 33) 446 NM_005406 6093 Hs.306307 NM_005406 ROCK1 P160ROCK|ROCK-I Rho-associated, coiled-coil containing protein kinase 1 protein-coding 561_WT_peak_2768 chr16 29801678 29801907 + 34 NA promoter-TSS (NM_007317) promoter-TSS (NM_007317) -242 NM_001256269 3835 Hs.612151 NM_007317 HPRD:04445 KIF22 A-328A3.2|KID|KNSL4|OBP|OBP-1|OBP-2|SEMDJL2 kinesin family member 22 protein-coding 561_WT_peak_6942 chr8 22301349 22301417 + 34 NA intron (NM_005605, intron 1 of 13) intron (NM_005605, intron 1 of 13) 2900 NM_001243974 5533 Hs.731683 NM_005605 HPRD:00236 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3, catalytic subunit, gamma isozyme protein-coding 561_WT_peak_4999 chr3 9974887 9975223 + 34 NA promoter-TSS (NM_015513) promoter-TSS (NM_015513) -469 NM_015513 78987 Hs.9383 NM_015513 HPRD:06206 CRELD1 AVSD2|CIRRIN cysteine-rich with EGF-like domains 1 protein-coding 561_WT_peak_2953 chr16 89574372 89574695 + 34 NA promoter-TSS (NM_199367) promoter-TSS (NM_199367) -263 NM_003119 6687 Hs.185597 NM_003119 HPRD:04149 SPG7 CAR|CMAR|PGN|SPG5C spastic paraplegia 7 (pure and complicated autosomal recessive) protein-coding 561_WT_peak_3848 chr19 49479519 49479702 + 34 NA intron (NR_027763, intron 9 of 14) intron (NR_027763, intron 9 of 14) 11044 NM_000146 2512 Hs.433670 NM_000146 HPRD:00616 FTL LFTD|NBIA3 ferritin, light polypeptide protein-coding 561_WT_peak_2873 chr16 67876434 67876684 + 34 NA exon (NM_020457, exon 1 of 1) exon (NM_020457, exon 1 of 1) 346 NM_020457 57215 Hs.632200 NM_020457 HPRD:11629 THAP11 CTG-B43a|CTG-B45d|RONIN THAP domain containing 11 protein-coding 561_WT_peak_1131 chr10 104154167 104154397 + 34 NA promoter-TSS (NM_001077494) promoter-TSS (NM_001077494) -53 NM_001077494 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 561_WT_peak_6036 chr5 177659460 177659630 + 34 NA exon (NM_153373, exon 1 of 13) exon (NM_153373, exon 1 of 13) 278 NM_153373 85007 Hs.248746 NM_153373 HPRD:18482 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 561_WT_peak_7111 chr8 110346641 110346815 + 34 NA promoter-TSS (NM_032869) promoter-TSS (NM_032869) 176 NR_036472 56943 Hs.492555 NM_020189 HPRD:13121 ENY2 e(y)2 enhancer of yellow 2 homolog (Drosophila) protein-coding 561_WT_peak_4996 chr3 5239405 5239577 + 34 NA intron (NM_014674, intron 2 of 11) intron (NM_014674, intron 2 of 11) 10132 NM_014674 9695 Hs.224616 NM_014674 HPRD:09644 EDEM1 EDEM ER degradation enhancer, mannosidase alpha-like 1 protein-coding 561_WT_peak_3365 chr17 76352294 76352527 + 34 NA TTS (NM_003955) TTS (NM_003955) 3750 NM_003955 9021 Hs.527973 NM_003955 HPRD:05006 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 561_WT_peak_5222 chr3 119396348 119396541 + 34 NA promoter-TSS (NM_005694) promoter-TSS (NM_005694) -201 NM_005694 10063 Hs.534383 NM_005694 COX17 - COX17 cytochrome c oxidase copper chaperone protein-coding 561_WT_peak_1870 chr12 113646152 113646412 + 34 NA intron (NM_138451, intron 1 of 2) LTR33A_|LTR|ERVL 12617 NM_138451 115811 Hs.568276 NM_138451 HPRD:13744 IQCD 4933433C09Rik|CFAP84|DRC10 IQ motif containing D protein-coding 561_WT_peak_4397 chr2 191399527 191399698 + 34 NA promoter-TSS (NM_001142645) promoter-TSS (NM_001142645) -144 NM_001142645 100131211 Hs.659824 NM_001142645 TMEM194B - transmembrane protein 194B protein-coding 561_WT_peak_7603 chrX 118781975 118782145 + 34 NA intron (NM_145799, intron 5 of 10) intron (NM_145799, intron 5 of 10) -1249 NR_030413 768218 NR_030413 MIR766 MIRN766|hsa-mir-766 microRNA 766 ncRNA 561_WT_peak_2711 chr16 17684907 17684950 + 34 NA Intergenic Intergenic -120190 NM_022166 64131 Hs.22907 NM_022166 HPRD:12168 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI xylosyltransferase I protein-coding 561_WT_peak_6465 chr6 128255667 128255849 + 34 NA Intergenic Intergenic -15982 NM_001164687 387357 Hs.661756 NM_001010923 HPRD:16662 THEMIS C6orf190|C6orf207|GASP|SPOT|TSEPA|bA325O24.3|bA325O24.4 thymocyte selection associated protein-coding 561_WT_peak_1697 chr12 51420294 51420467 + 34 NA promoter-TSS (NM_001174129) promoter-TSS (NM_001174129) -181 NM_001174127 4891 Hs.505545 NM_000617 HPRD:02750 SLC11A2 DCT1|DMT1|NRAMP2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 protein-coding 561_WT_peak_7549 chrX 52926044 52926367 + 34 NA promoter-TSS (NM_001242491) promoter-TSS (NM_001242491) -117 NM_001242491 29057 Hs.6451 NM_014138 HPRD:06683 FAM156A PRO0659|TMEM29 family with sequence similarity 156, member A protein-coding 561_WT_peak_527 chr1 151811031 151811401 + 34 NA exon (NM_001136003, exon 2 of 2) exon (NM_001136003, exon 2 of 2) 271 NR_024237 100132111 Hs.697059 NR_024237 LOC100132111 - uncharacterized LOC100132111 ncRNA 561_WT_peak_5193 chr3 107810191 107810509 + 34 NA promoter-TSS (NM_198793) promoter-TSS (NM_198793) -415 NM_001777 961 Hs.446414 NM_001777 HPRD:03017 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 561_WT_peak_4580 chr20 23338552 23338728 + 34 NA non-coding (NR_109884, exon 1 of 3) non-coding (NR_109884, exon 1 of 3) 124 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 561_WT_peak_6699 chr7 72299739 72299864 + 34 NA promoter-TSS (NM_001145440) promoter-TSS (NM_001145440) -151 NR_024111 155370 Hs.585053 NR_001588 ENSG00000225648 SBDSP1 SBDSP Shwachman-Bodian-Diamond syndrome pseudogene 1 pseudo 561_WT_peak_1046 chr10 74130070 74130302 + 34 NA intron (NM_001195518, intron 11 of 11) intron (NM_001195518, intron 11 of 11) -15279 NM_017626 54788 Hs.500013 NM_017626 HPRD:07086 DNAJB12 DJ10 DnaJ (Hsp40) homolog, subfamily B, member 12 protein-coding 561_WT_peak_3147 chr17 37009830 37010113 + 34 NA promoter-TSS (NM_000978) promoter-TSS (NM_000978) 82 NM_000978 9349 Hs.406300 NM_000978 RPL23 L23|rpL17 ribosomal protein L23 protein-coding 561_WT_peak_3937 chr19 58951158 58951478 + 34 NA 5' UTR (NM_003433, exon 1 of 3) 5' UTR (NM_003433, exon 1 of 3) 271 NM_003433 7691 Hs.156169 NM_003433 HPRD:07240 ZNF132 pHZ-12 zinc finger protein 132 protein-coding 561_WT_peak_4041 chr2 42795984 42796188 + 34 NA intron (NM_020744, intron 1 of 13) CpG 429 NM_020744 57504 Hs.435413 NM_020744 HPRD:12359 MTA3 - metastasis associated 1 family, member 3 protein-coding 561_WT_peak_2613 chr15 92400907 92400965 + 34 NA intron (NM_013272, intron 1 of 9) intron (NM_013272, intron 1 of 9) 3998 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 561_WT_peak_2742 chr16 24740756 24741142 + 34 NA promoter-TSS (NM_014494) promoter-TSS (NM_014494) -100 NM_014494 27327 Hs.655057 NM_014494 HPRD:11640 TNRC6A CAGH26|GW1|GW182|TNRC6 trinucleotide repeat containing 6A protein-coding 561_WT_peak_6337 chr6 43655348 43655531 + 34 NA exon (NM_018135, exon 1 of 6) exon (NM_018135, exon 1 of 6) 110 NM_001193343 55168 Hs.520149 NM_018135 HPRD:14780 MRPS18A HumanS18b|MRP-S18-3|MRPS18-3|S18bmt mitochondrial ribosomal protein S18A protein-coding 561_WT_peak_5897 chr5 131133012 131133205 + 34 NA promoter-TSS (NM_133372) promoter-TSS (NM_133372) -352 NM_133372 96459 Hs.591273 NM_133372 HPRD:17233 FNIP1 - folliculin interacting protein 1 protein-coding 561_WT_peak_6330 chr6 43138899 43139117 + 34 NA promoter-TSS (NM_003131) promoter-TSS (NM_003131) -25 NM_003131 6722 Hs.520140 NM_003131 HPRD:02788 SRF MCM1 serum response factor (c-fos serum response element-binding transcription factor) protein-coding 561_WT_peak_4378 chr2 178129887 178130057 + 34 NA promoter-TSS (NM_006164) promoter-TSS (NM_006164) -113 NM_006164 4780 Hs.744006 NM_006164 HPRD:02732 NFE2L2 NRF2 nuclear factor, erythroid 2-like 2 protein-coding 561_WT_peak_5780 chr5 66299768 66299814 + 34 NA promoter-TSS (NM_001297651) promoter-TSS (NM_001297651) 191 NR_111908 101928794 Hs.672435 NR_111908 LOC101928794 - uncharacterized LOC101928794 ncRNA 561_WT_peak_1417 chr11 76155440 76155901 + 34 NA promoter-TSS (NM_020193) promoter-TSS (NM_020193) -399 NM_001300943 56946 Hs.352588 NM_020193 HPRD:10544 C11orf30 EMSY chromosome 11 open reading frame 30 protein-coding 561_WT_peak_6892 chr7 149119307 149119449 + 34 NA Intergenic Intergenic 38675 NM_015694 27153 Hs.38512 NM_015694 HPRD:13849 ZNF777 - zinc finger protein 777 protein-coding 561_WT_peak_1323 chr11 62622426 62622540 + 34 NA promoter-TSS (NR_002563) promoter-TSS (NR_002563) 72 NR_002563 9301 NR_002563 ENSG00000255717 SNORD27 RNU27|U27 small nucleolar RNA, C/D box 27 snoRNA 561_WT_peak_6915 chr7 156433492 156433760 + 34 NA promoter-TSS (NR_026865) promoter-TSS (NR_026865) 185 NM_001184996 140545 Hs.446194 NM_030936 HPRD:11517 RNF32 FKSG33|HSD15|LMBR2 ring finger protein 32 protein-coding 561_WT_peak_1546 chr12 1099747 1099936 + 34 NA promoter-TSS (NM_001297419) promoter-TSS (NM_001297419) -533 NR_027949 23085 Hs.601216 NM_178039 HPRD:06181 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 561_WT_peak_40 chr1 8014028 8014304 + 34 NA Intergenic CpG -7548 NM_007262 11315 Hs.419640 NM_007262 HPRD:03961 PARK7 DJ-1|DJ1|HEL-S-67p parkinson protein 7 protein-coding 561_WT_peak_1316 chr11 62358812 62359146 + 34 NA exon (NM_022830, exon 1 of 9) exon (NM_022830, exon 1 of 9) 130 NM_022830 64852 Hs.728983 NM_022830 HPRD:15226 TUT1 PAPD2|RBM21|STARPAP|TUTase terminal uridylyl transferase 1, U6 snRNA-specific protein-coding 561_WT_peak_5254 chr3 130465874 130466056 + 34 NA promoter-TSS (NM_014602) promoter-TSS (NM_014602) -269 NM_014602 30849 Hs.149032 NM_014602 HPRD:04010 PIK3R4 VPS15|p150 phosphoinositide-3-kinase, regulatory subunit 4 protein-coding 561_WT_peak_6207 chr6 27560596 27560774 + 34 NA Intergenic Intergenic -101129 NR_038293 100507173 Hs.635987 NR_038292 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 561_WT_peak_6870 chr7 139930709 139930892 + 34 NA Intergenic Intergenic 53739 NR_024451 100134229 Hs.634333 NR_024451 ENSG00000260231 JHDM1D-AS1 - JHDM1D antisense RNA 1 (head to head) ncRNA 561_WT_peak_1314 chr11 62323938 62324277 + 34 NA Intergenic Intergenic 3671 NR_037427 100500804 NR_037427 MIR3654 - microRNA 3654 ncRNA 561_WT_peak_4057 chr2 46844304 46844488 + 34 NA promoter-TSS (NM_173074) promoter-TSS (NM_173074) 85 NM_014171 9419 Hs.133998 NM_014171 HPRD:05208 CRIPT SSMDF cysteine-rich PDZ-binding protein protein-coding 561_WT_peak_1037 chr10 71905612 71905884 + 34 NA exon (NM_173555, exon 1 of 4) exon (NM_173555, exon 1 of 4) 748 NR_073594 219743 Hs.533655 NM_173555 HPRD:15593 TYSND1 NET41 trypsin domain containing 1 protein-coding 561_WT_peak_3716 chr19 33651407 33651612 + 34 NA intron (NM_173479, intron 8 of 10) L2b|LINE|L2 28511 NM_173479 126248 Hs.211046 NM_173479 HPRD:14033 WDR88 PQWD WD repeat domain 88 protein-coding 561_WT_peak_5339 chr3 183354731 183354920 + 33 NA intron (NM_017644, intron 1 of 7) intron (NM_017644, intron 1 of 7) 1414 NM_017644 54800 Hs.407709 NM_017644 HPRD:16838 KLHL24 DRE1|KRIP6 kelch-like family member 24 protein-coding 561_WT_peak_2154 chr14 24911739 24911926 + 33 NA promoter-TSS (NM_001290293) promoter-TSS (NM_001290293) -173 NM_001290293 56948 Hs.643552 NM_020195 HPRD:16598 SDR39U1 C14orf124|HCDI short chain dehydrogenase/reductase family 39U, member 1 protein-coding 561_WT_peak_1038 chr10 72338361 72338598 + 33 NA Intergenic Intergenic 24052 NM_001083116 5551 Hs.2200 NM_005041 HPRD:01362 PRF1 FLH2|HPLH2|P1|PFN1|PFP perforin 1 (pore forming protein) protein-coding 561_WT_peak_5834 chr5 80051548 80051762 + 33 NA intron (NM_002439, intron 12 of 23) intron (NM_002439, intron 12 of 23) -100855 NR_110936 1719 Hs.592364 NM_000791 HPRD:00519 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 561_WT_peak_5016 chr3 14473484 14473673 + 33 NA intron (NM_001134367, intron 10 of 22) intron (NM_001134367, intron 10 of 22) 29502 NM_001134368 6533 Hs.529488 NM_003043 HPRD:01734 SLC6A6 TAUT solute carrier family 6 (neurotransmitter transporter), member 6 protein-coding 561_WT_peak_1371 chr11 65657944 65658392 + 33 NA 5' UTR (NM_006848, exon 1 of 1) 5' UTR (NM_006848, exon 1 of 1) 293 NM_006848 11007 Hs.66713 NM_006848 HPRD:16101 CCDC85B DIPA coiled-coil domain containing 85B protein-coding 561_WT_peak_6953 chr8 27950617 27950837 + 33 NA 5' UTR (NM_018091, exon 1 of 15) 5' UTR (NM_018091, exon 1 of 15) 143 NM_001284225 55140 Hs.491336 NM_018091 HPRD:10936 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 561_WT_peak_182 chr1 36851999 36852340 + 33 NA promoter-TSS (NM_032017) promoter-TSS (NM_032017) -641 NM_001282546 83931 Hs.471768 NM_032017 HPRD:11359 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 561_WT_peak_1458 chr11 94822601 94822837 + 33 NA promoter-TSS (NM_015036) promoter-TSS (NM_015036) -255 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 561_WT_peak_1015 chr10 65028782 65028798 + 33 NA 5' UTR (NM_001282948, exon 1 of 25) 5' UTR (NM_001282948, exon 1 of 25) 193 NM_001282948 221037 Hs.413416 NM_004241 HPRD:05141 JMJD1C TRIP8 jumonji domain containing 1C protein-coding 561_WT_peak_1701 chr12 51718029 51718207 + 33 NA promoter-TSS (NM_001290009) promoter-TSS (NM_001290009) -136 NM_016293 51411 Hs.14770 NM_016293 HPRD:05805 BIN2 BRAP-1 bridging integrator 2 protein-coding 561_WT_peak_3663 chr19 15578085 15578258 + 33 NA Intergenic L2c|LINE|L2 -2789 NM_022904 64926 Hs.136979 NM_022904 ENSG00000105122 RASAL3 - RAS protein activator like 3 protein-coding 561_WT_peak_759 chr1 226927219 226927345 + 33 NA promoter-TSS (NM_002221) promoter-TSS (NM_002221) -406 NM_002221 3707 Hs.528087 NM_002221 HPRD:00942 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 561_WT_peak_3566 chr19 2236519 2236739 + 33 NA promoter-TSS (NM_007165) promoter-TSS (NM_007165) -187 NM_007165 8175 Hs.115232 NM_007165 HPRD:02877 SF3A2 PRP11|PRPF11|SAP62|SF3a66 splicing factor 3a, subunit 2, 66kDa protein-coding 561_WT_peak_6412 chr6 100016412 100016703 + 33 NA 5' UTR (NM_005190, exon 1 of 12) 5' UTR (NM_005190, exon 1 of 12) 133 NM_005190 892 Hs.430646 NM_005190 HPRD:00456 CCNC CycC cyclin C protein-coding 561_WT_peak_7088 chr8 101734660 101734894 + 33 NA promoter-TSS (NM_002568) promoter-TSS (NM_002568) -462 NM_002568 26986 Hs.387804 NM_002568 HPRD:05247 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein, cytoplasmic 1 protein-coding 561_WT_peak_705 chr1 206957849 206958048 + 33 NA Intergenic Intergenic -12109 NM_000572 3586 Hs.193717 NM_000572 HPRD:00495 IL10 CSIF|GVHDS|IL-10|IL10A|TGIF interleukin 10 protein-coding 561_WT_peak_1673 chr12 48099956 48100065 + 33 NA promoter-TSS (NM_001146075) promoter-TSS (NM_001146075) -166 NM_024604 79657 Hs.437855 NM_024604 RPAP3 - RNA polymerase II associated protein 3 protein-coding 561_WT_peak_4517 chr2 239197587 239197871 + 33 NA promoter-TSS (NM_022817) promoter-TSS (NM_022817) -522 NM_022817 8864 Hs.58756 NM_003894 HPRD:04575 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 561_WT_peak_4428 chr2 200820085 200820423 + 33 NA non-coding (NR_109905, exon 1 of 5) non-coding (NR_109905, exon 1 of 5) 205 NR_109905 129450 Hs.204619 NM_152382 HPRD:08232 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 561_WT_peak_2459 chr15 44955929 44956295 + 33 NA promoter-TSS (NM_001160227) promoter-TSS (NM_001160227) -236 NM_025137 80208 Hs.656271 NM_025137 HPRD:07963 SPG11 KIAA1840 spastic paraplegia 11 (autosomal recessive) protein-coding 561_WT_peak_5605 chr4 143326190 143326408 + 33 NA intron (NM_001101669, intron 6 of 25) GA-rich|Low_complexity|Low_complexity 441305 NM_003866 8821 Hs.531403 NM_003866 HPRD:06322 INPP4B - inositol polyphosphate-4-phosphatase, type II, 105kDa protein-coding 561_WT_peak_3309 chr17 63053084 63053376 + 33 NA promoter-TSS (NM_006572) promoter-TSS (NM_006572) -310 NM_006572 10672 Hs.515018 NM_006572 HPRD:05100 GNA13 G13 guanine nucleotide binding protein (G protein), alpha 13 protein-coding 561_WT_peak_6502 chr6 144472531 144472740 + 33 NA intron (NM_003764, intron 1 of 1) intron (NM_003764, intron 1 of 1) 981 NM_003764 8676 Hs.118958 NM_003764 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 561_WT_peak_6630 chr7 27779847 27780036 + 33 NA intron (NM_006024, intron 1 of 16) CpG 227 NM_006024 8887 Hs.34576 NM_006024 HPRD:05618 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 (human T-cell leukemia virus type I) binding protein 1 protein-coding 561_WT_peak_3506 chr18 48724422 48724591 + 33 NA promoter-TSS (NM_016626) promoter-TSS (NM_016626) -455 NM_016626 51320 Hs.465144 NM_016626 HPRD:15255 MEX3C MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 561_WT_peak_4301 chr2 132250397 132250880 + 33 NA promoter-TSS (NM_001085365) promoter-TSS (NM_001085365) 252 NR_026922 150776 Hs.535622 NR_026922 ENSG00000152117 LOC150776 - sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene pseudo 561_WT_peak_3627 chr19 11546179 11546448 + 33 NA promoter-TSS (NM_001289102) promoter-TSS (NM_001289102) -153 NM_002743 5589 Hs.610830 NM_002743 HPRD:03518 PRKCSH AGE-R2|G19P1|PCLD|PKCSH|PLD1 protein kinase C substrate 80K-H protein-coding 561_WT_peak_2489 chr15 55569303 55569494 + 33 NA intron (NM_183235, intron 1 of 6) HAL1|LINE|L1 -6291 NM_183236 5873 Hs.654978 NM_004580 HPRD:04845 RAB27A GS2|HsT18676|RAB27|RAM RAB27A, member RAS oncogene family protein-coding 561_WT_peak_1232 chr11 20409027 20409351 + 32 NA 5' UTR (NM_001145167, exon 1 of 15) 5' UTR (NM_001145167, exon 1 of 15) 113 NM_005788 10196 Hs.152337 NM_005788 HPRD:11934 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 561_WT_peak_6804 chr7 104936096 104936157 + 32 NA intron (NM_001278273, intron 2 of 16) L1MB4|LINE|L1 3100 NM_001278273 6733 Hs.285197 NM_182691 HPRD:04280 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 561_WT_peak_6581 chr7 6048960 6049269 + 32 NA promoter-TSS (NM_000535) promoter-TSS (NM_000535) 232 NM_006303 7965 Hs.301613 NM_006303 HPRD:02915 AIMP2 JTV-1|JTV1|P38 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 protein-coding 561_WT_peak_1632 chr12 26985234 26985448 + 32 NA intron (NM_002223, intron 1 of 56) intron (NM_002223, intron 1 of 56) 790 NM_002223 3709 Hs.512235 NM_002223 HPRD:02536 ITPR2 CFAP48|IP3R2 inositol 1,4,5-trisphosphate receptor, type 2 protein-coding 561_WT_peak_4718 chr20 61585363 61585805 + 32 NA intron (NM_022082, intron 1 of 12) intron (NM_022082, intron 1 of 12) 1585 NM_022082 63910 Hs.512686 NM_022082 HPRD:12777 SLC17A9 C20orf59|VNUT solute carrier family 17 (vesicular nucleotide transporter), member 9 protein-coding 561_WT_peak_709 chr1 207494553 207494785 + 32 NA promoter-TSS (NM_000574) promoter-TSS (NM_000574) -148 NM_000574 1604 Hs.126517 NM_000574 HPRD:00500 CD55 CR|CROM|DAF|TC CD55 molecule, decay accelerating factor for complement (Cromer blood group) protein-coding 561_WT_peak_548 chr1 155220531 155220721 + 32 NA intron (NM_198264, intron 5 of 8) intron (NM_198264, intron 5 of 8) 4648 NM_001267608 10712 Hs.348308 NM_006589 HPRD:08511 FAM189B C1orf2|COTE1 family with sequence similarity 189, member B protein-coding 561_WT_peak_2561 chr15 76196068 76196243 + 32 NA promoter-TSS (NM_012170) promoter-TSS (NM_012170) -45 NM_012170 26263 Hs.591115 NM_012170 HPRD:16437 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 561_WT_peak_3186 chr17 41116400 41116840 + 32 NA promoter-TSS (NM_001261434) promoter-TSS (NM_001261434) -105 NM_001261434 80755 Hs.317403 NM_001261434 HPRD:14524 AARSD1 - alanyl-tRNA synthetase domain containing 1 protein-coding 561_WT_peak_370 chr1 111162172 111162357 + 32 NA intron (NM_001204269, intron 1 of 4) intron (NM_001204269, intron 1 of 4) 11832 NM_001204269 3737 Hs.248139 NM_004974 HPRD:01443 KCNA2 HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel, shaker-related subfamily, member 2 protein-coding 561_WT_peak_1002 chr10 61666597 61666787 + 32 NA promoter-TSS (NM_005436) promoter-TSS (NM_005436) -278 NM_005436 8030 Hs.591360 NM_005436 HPRD:09064 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 561_WT_peak_7575 chrX 70751934 70752121 + 32 NA promoter-TSS (NM_181672) promoter-TSS (NM_181672) -885 NM_181673 8473 Hs.405410 NM_003605 HPRD:02222 OGT HRNT1|O-GLCNAC O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 561_WT_peak_5835 chr5 80597507 80597717 + 32 NA promoter-TSS (NR_034121) promoter-TSS (NR_034121) 210 NM_001131035 84240 Hs.15536 NM_032280 HPRD:15704 ZCCHC9 PPP1R41 zinc finger, CCHC domain containing 9 protein-coding 561_WT_peak_3494 chr18 43735940 43736121 + 32 NA Intergenic MamGypLTR1c|LTR|Gypsy -17958 NM_001008239 147339 Hs.116486 NM_145055 HPRD:12690 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 561_WT_peak_5555 chr4 99064683 99064869 + 32 NA promoter-TSS (NM_174952) promoter-TSS (NM_174952) -385 NM_174952 285555 Hs.680226 NM_174952 HPRD:14650 STPG2 C4orf37 sperm-tail PG-rich repeat containing 2 protein-coding 561_WT_peak_6963 chr8 29381710 29381891 + 32 NA Intergenic Intergenic -173533 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 561_WT_peak_2791 chr16 30933989 30934229 + 32 NA promoter-TSS (NM_001282351) promoter-TSS (NM_001282351) -267 NM_001282351 54620 Hs.152149 NM_019085 HPRD:12366 FBXL19 CXXC11|Fbl19|JHDM1C F-box and leucine-rich repeat protein 19 protein-coding 561_WT_peak_3109 chr17 29298065 29298367 + 32 NA exon (NM_001184992, exon 1 of 6) exon (NM_001184992, exon 1 of 6) 260 NM_197939 84282 Hs.29874 NM_032322 HPRD:11506 RNF135 MMFD|REUL|Riplet ring finger protein 135 protein-coding 561_WT_peak_6349 chr6 52926528 52926845 + 32 NA promoter-TSS (NM_016513) promoter-TSS (NM_016513) -86 NM_014920 22858 Hs.417022 NM_014920 HPRD:09996 ICK ECO|LCK2|MRK intestinal cell (MAK-like) kinase protein-coding 561_WT_peak_1465 chr11 102322582 102322773 + 32 NA intron (NM_052932, intron 1 of 4) CpG 1098 NM_052932 114908 Hs.503709 NM_052932 ENSG00000152558 TMEM123 KCT3|PORIMIN|PORMIN transmembrane protein 123 protein-coding 561_WT_peak_5005 chr3 12437150 12437399 + 32 NA intron (NM_005037, intron 4 of 6) intron (NM_005037, intron 4 of 6) 44273 NM_015869 5468 Hs.162646 NM_005037 HPRD:03288 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator-activated receptor gamma protein-coding 561_WT_peak_3758 chr19 39564391 39564566 + 32 NA Intergenic Intergenic -10467 NM_001004318 390928 Hs.448934 NM_001004318 HPRD:13361 PAPL - iron/zinc purple acid phosphatase-like protein protein-coding 561_WT_peak_4530 chr2 242576856 242577067 + 32 NA promoter-TSS (NM_178326) promoter-TSS (NM_178326) -66 NM_013325 23192 Hs.283610 NM_013325 HPRD:16499 ATG4B APG4B|AUTL1 autophagy related 4B, cysteine peptidase protein-coding 561_WT_peak_3979 chr2 20851068 20851277 + 32 NA promoter-TSS (NM_022460) promoter-TSS (NM_022460) -308 NM_022460 64342 Hs.531785 NM_022460 HPRD:13357 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 561_WT_peak_3087 chr17 26645716 26645900 + 32 NA promoter-TSS (NM_014573) promoter-TSS (NM_014573) -313 NM_014573 27346 Hs.199695 NM_014573 HPRD:14343 TMEM97 MAC30 transmembrane protein 97 protein-coding 561_WT_peak_1553 chr12 4252339 4252599 + 32 NA Intergenic Intergenic -130433 NM_001759 894 Hs.376071 NM_001759 HPRD:00451 CCND2 KIAK0002 cyclin D2 protein-coding 561_WT_peak_5343 chr3 184016684 184016887 + 32 NA promoter-TSS (NM_002808) promoter-TSS (NM_002808) -101 NM_002808 5708 Hs.518464 NM_002808 HPRD:05870 PSMD2 P97|RPN1|S2|TRAP2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 protein-coding 561_WT_peak_1567 chr12 7068202 7068365 + 32 NA intron (NM_080549, intron 11 of 15) intron (NM_080549, intron 11 of 15) -4579 NR_029779 406985 NR_029779 miRBase:MI0000650 MIR200C MIRN200C microRNA 200c ncRNA 561_WT_peak_7315 chr9 82208104 82208268 + 32 NA intron (NR_104239, intron 4 of 20) intron (NR_104239, intron 4 of 20) 21498 NR_104239 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|ESG|ESG4|GRG4 transducin-like enhancer of split 4 protein-coding 561_WT_peak_5607 chr4 143337931 143338039 + 32 NA intron (NM_001101669, intron 5 of 25) intron (NM_001101669, intron 5 of 25) 429619 NM_003866 8821 Hs.531403 NM_003866 HPRD:06322 INPP4B - inositol polyphosphate-4-phosphatase, type II, 105kDa protein-coding 561_WT_peak_573 chr1 159880539 159880576 + 32 NA Intergenic Intergenic -10651 NM_012337 25790 Hs.647705 NM_012337 HPRD:05514 CFAP45 CCDC19|NESG1 cilia and flagella associated protein 45 protein-coding 561_WT_peak_3349 chr17 74099995 74100179 + 32 NA promoter-TSS (NM_001145298) promoter-TSS (NM_001145298) -219 NM_015219 23265 Hs.514496 NM_015219 HPRD:16292 EXOC7 2-5-3p|EX070|EXO70|EXOC1|Exo70p|YJL085W exocyst complex component 7 protein-coding 561_WT_peak_74 chr1 16245858 16246047 + 32 NA exon (NM_015001, exon 8 of 15) exon (NM_015001, exon 8 of 15) 56675 NM_001287603 7709 Hs.433764 NM_003443 HPRD:04968 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 561_WT_peak_4131 chr2 70363446 70363515 + 32 NA Intergenic Intergenic -11032 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LOC100133985 - uncharacterized LOC100133985 ncRNA 561_WT_peak_253 chr1 55681168 55681343 + 32 NA promoter-TSS (NM_015306) promoter-TSS (NM_015306) 174 NR_038320 100507634 Hs.735428 NR_038320 LOC100507634 - uncharacterized LOC100507634 ncRNA 561_WT_peak_529 chr1 151918224 151918390 + 32 NA Intergenic Intergenic -35946 NM_053055 117145 Hs.164070 NM_053055 THEM4 CTMP thioesterase superfamily member 4 protein-coding 561_WT_peak_2850 chr16 57075367 57075587 + 32 NA exon (NM_032206, exon 17 of 48) exon (NM_032206, exon 17 of 48) 24491 NM_032206 84166 Hs.528836 NM_032206 HPRD:14831 NLRC5 CLR16.1|NOD27|NOD4 NLR family, CARD domain containing 5 protein-coding 561_WT_peak_5132 chr3 56817857 56818100 + 32 NA intron (NM_001289698, intron 2 of 10) intron (NM_001289698, intron 2 of 10) -8233 NM_001128616 50650 Hs.476402 NM_019555 HPRD:12480 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor (GEF) 3 protein-coding 561_WT_peak_1877 chr12 120524860 120525030 + 32 NA intron (NM_207311, intron 7 of 8) CpG 29698 NM_001167606 11021 Hs.524788 NM_006861 HPRD:05010 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 561_WT_peak_6714 chr7 73866868 73866947 + 31 NA Intergenic LTR8A|LTR|ERV1 -1213 NM_005685 9569 Hs.647056 NM_005685 HPRD:08379 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 561_WT_peak_3377 chr17 78676943 78677143 + 31 NA intron (NM_020761, intron 3 of 33) intron (NM_020761, intron 3 of 33) 102389 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 561_WT_peak_4450 chr2 204756169 204756339 + 31 NA Intergenic MamGypLTR1d|LTR|Gypsy 23743 NM_005214 1493 Hs.247824 NM_005214 HPRD:00474 CTLA4 CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte-associated protein 4 protein-coding 561_WT_peak_71 chr1 15929970 15930147 + 31 NA Intergenic CpG -13895 NM_032341 84301 Hs.718857 NM_032341 DDI2 - DNA-damage inducible 1 homolog 2 (S. cerevisiae) protein-coding 561_WT_peak_4038 chr2 42068371 42068650 + 31 NA Intergenic CpG -36185 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LOC388942 - uncharacterized LOC388942 ncRNA 561_WT_peak_7475 chr9 136548804 136548974 + 31 NA intron (NM_007101, intron 17 of 20) intron (NM_007101, intron 17 of 20) -26359 NR_102735 138948 Hs.223858 NR_002783 ENSG00000225756 DBH-AS1 NCRNA00118 DBH antisense RNA 1 ncRNA 561_WT_peak_3523 chr18 61089880 61090254 + 31 NA promoter-TSS (NM_004869) promoter-TSS (NM_004869) -315 NM_004869 9525 Hs.126550 NM_004869 HPRD:15653 VPS4B SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B (S. cerevisiae) protein-coding 561_WT_peak_5298 chr3 156806553 156806882 + 31 NA promoter-TSS (NR_034008) promoter-TSS (NR_034008) -953 NR_034008 100498859 Hs.633655 NR_034008 ENSG00000241135 LINC00881 - long intergenic non-protein coding RNA 881 ncRNA 561_WT_peak_4573 chr20 18268716 18268934 + 31 NA promoter-TSS (NM_001282995) promoter-TSS (NM_001282995) -102 NM_001282996 7692 Hs.472221 NM_003434 HPRD:04964 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 561_WT_peak_5604 chr4 140780136 140780306 + 31 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 193299 NM_002413 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 561_WT_peak_5718 chr5 43007756 43007955 + 31 NA Intergenic MER61D|LTR|ERV1 11058 NR_034086 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 561_WT_peak_5811 chr5 74062854 74063025 + 31 NA non-coding (NR_073403, exon 1 of 7) non-coding (NR_073403, exon 1 of 7) 123 NM_001271665 10412 Hs.482526 NM_014886 HPRD:18191 NSA2 CDK105|HCL-G1|HCLG1|HUSSY29|TINP1 NSA2 ribosome biogenesis homolog (S. cerevisiae) protein-coding 561_WT_peak_3367 chr17 76355963 76356183 + 31 NA promoter-TSS (NM_003955) promoter-TSS (NM_003955) 87 NM_003955 9021 Hs.527973 NM_003955 HPRD:05006 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 561_WT_peak_937 chr10 30990729 30990908 + 31 NA intron (NR_036438, intron 5 of 9) intron (NR_036438, intron 5 of 9) 9615 NR_036438 645954 Hs.408581 NR_036438 ENSG00000234814 SVILP1 - supervillin pseudogene 1 pseudo 561_WT_peak_1194 chr11 6624687 6624867 + 31 NA promoter-TSS (NM_001014795) promoter-TSS (NM_001014795) 103 NM_015324 23378 Hs.652255 NM_015324 RRP8 KIAA0409|NML ribosomal RNA processing 8, methyltransferase, homolog (yeast) protein-coding 561_WT_peak_18 chr1 1655947 1656128 + 31 NA promoter-TSS (NM_033529) promoter-TSS (NM_033529) -178 NM_033487 984 Hs.651228 NM_001787 HPRD:08909 CDK11B CDC2L1|CDK11|CDK11-p110|CDK11-p46|CDK11-p58|CLK-1|PITSLREA|PK58|p58|p58CDC2L1|p58CLK-1 cyclin-dependent kinase 11B protein-coding 561_WT_peak_2121-2 chr14 21852002 21852019 + 31 NA intron (NM_007192, intron 1 of 25) CpG 415 NM_007192 11198 Hs.213724 NM_007192 HPRD:16088 SUPT16H CDC68|FACTP140|SPT16/CDC68 suppressor of Ty 16 homolog (S. cerevisiae) protein-coding 561_WT_peak_2121 chr14 21851845 21851958 + 31 NA intron (NM_007192, intron 1 of 25) CpG 524 NM_007192 11198 Hs.213724 NM_007192 HPRD:16088 SUPT16H CDC68|FACTP140|SPT16/CDC68 suppressor of Ty 16 homolog (S. cerevisiae) protein-coding 561_WT_peak_3904 chr19 56166974 56167183 + 30 NA intron (NM_001012478, intron 1 of 11) CpG-14459 1662 NM_001012478 11338 Hs.528007 NM_007279 HPRD:01872 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 561_WT_peak_1183 chr11 819877 820061 + 30 NA intron (NM_020376, intron 2 of 9) CpG-3673 1068 NM_020376 57104 Hs.654697 NM_020376 HPRD:11443 PNPLA2 1110001C14Rik|ATGL|PEDF-R|TTS-2.2|TTS2|iPLA2zeta patatin-like phospholipase domain containing 2 protein-coding 561_WT_peak_4132 chr2 70369166 70369337 + 30 NA Intergenic CpG -16803 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LOC100133985 - uncharacterized LOC100133985 ncRNA 561_WT_peak_7237 chr9 26956483 26956626 + 30 NA promoter-TSS (NR_121605) promoter-TSS (NR_121605) 183 NM_001099224 80173 Hs.145402 NM_025103 HPRD:09727 IFT74 CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 561_WT_peak_4901 chr22 37373637 37373772 + 30 NA Intergenic Intergenic 12415 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 561_WT_peak_4755 chr21 26945293 26945509 + 30 NA promoter-TSS (NR_030784) promoter-TSS (NR_030784) -891 NR_030784 406947 NR_030784 miRBase:MI0000681 MIR155 MIRN155|miRNA155 microRNA 155 ncRNA 561_WT_peak_1485 chr11 113644460 113644750 + 30 NA promoter-TSS (NM_004724) promoter-TSS (NM_004724) -120 NM_004724 9183 Hs.503886 NM_004724 HPRD:04902 ZW10 HZW10|KNTC1AP zw10 kinetochore protein protein-coding 561_WT_peak_822 chr1 244463011 244463134 + 30 NA Intergenic Intergenic -52865 NM_001276349 200159 Hs.442703 NM_001012970 HPRD:13168 C1orf100 - chromosome 1 open reading frame 100 protein-coding 561_WT_peak_3728 chr19 36204013 36204224 + 30 NA intron (NM_014383, intron 1 of 5) intron (NM_014383, intron 1 of 5) 288 NM_014383 27033 Hs.99430 NM_014383 HPRD:12055 ZBTB32 FAXF|FAZF|Rog|TZFP|ZNF538 zinc finger and BTB domain containing 32 protein-coding 561_WT_peak_1704 chr12 52418760 52418863 + 30 NA intron (NM_001202233, intron 1 of 7) intron (NM_001202233, intron 1 of 7) 2195 NM_001202233 3164 Hs.524430 NM_002135 HPRD:00744 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4, group A, member 1 protein-coding 561_WT_peak_5748 chr5 54013412 54013593 + 29 NA intron (NR_104658, intron 1 of 2) L1MA9|LINE|L1 -14350 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 561_WT_peak_3511 chr18 56338729 56338970 + 29 NA exon (NM_001289967, exon 1 of 2) exon (NM_001289967, exon 1 of 2) 231 NM_173844 10892 Hs.601217 NM_006785 HPRD:06892 MALT1 IMD12|MLT|MLT1 mucosa associated lymphoid tissue lymphoma translocation gene 1 protein-coding 561_WT_peak_2490 chr15 55610929 55611118 + 29 NA promoter-TSS (NM_004855) promoter-TSS (NM_004855) -110 NM_004855 9488 Hs.612814 NM_004855 HPRD:04988 PIGB GPI-MT-III|PIG-B phosphatidylinositol glycan anchor biosynthesis, class B protein-coding 561_WT_peak_2155 chr14 25103483 25103677 + 29 NA promoter-TSS (NM_004131) promoter-TSS (NM_004131) -148 NM_004131 3002 Hs.1051 NM_004131 HPRD:00476 GZMB CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) protein-coding 561_WT_peak_4651 chr20 44992806 44993007 + 29 NA intron (NM_001281460, intron 1 of 10) CpG 191 NM_015945 51006 Hs.593344 NM_015945 HPRD:15371 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 (GDP-fucose transporter), member C2 protein-coding 561_WT_peak_2400 chr15 22423178 22423363 + 29 NA Intergenic L1PA13|LINE|L1 9808 NR_028067 390539 Hs.666555 NR_028067 ENSG00000259435 OR4N3P OR15-2 olfactory receptor, family 4, subfamily N, member 3 pseudogene pseudo 561_WT_peak_4425 chr2 198380837 198381009 + 29 NA promoter-TSS (NM_001204094) promoter-TSS (NM_001204094) -99 NM_001204094 25843 Hs.633165 NM_015387 HPRD:10165 MOB4 2C4D|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 561_WT_peak_1960 chr13 25861523 25861745 + 29 NA promoter-TSS (NM_004685) promoter-TSS (NM_004685) 70 NM_004685 9107 Hs.643702 NM_004685 HPRD:11946 MTMR6 - myotubularin related protein 6 protein-coding 561_WT_peak_2888 chr16 70323219 70323399 + 29 NA promoter-TSS (NM_001257174) promoter-TSS (NM_001257174) 103 NM_001605 16 Hs.315137 NM_001605 HPRD:03042 AARS CMT2N alanyl-tRNA synthetase protein-coding 561_WT_peak_1728 chr12 56583553 56583642 + 29 NA promoter-TSS (NM_003075) promoter-TSS (NM_003075) -246 NM_003075 6601 Hs.236030 NM_003075 HPRD:03437 SMARCC2 BAF170|CRACC2|Rsc8 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 protein-coding 561_WT_peak_2630 chr15 100346542 100347018 + 29 NA intron (NR_003260, intron 1 of 4) CpG 352 NR_003260 196968 Hs.567763 NM_194295 HPRD:13192 DNM1P46 C15orf51|DNM1DN14.2|DNM1DN14@ DNM1 pseudogene 46 pseudo 561_WT_peak_6105 chr6 13428599 13428799 + 29 NA intron (NM_018988, intron 1 of 1) intron (NM_018988, intron 1 of 1) -20330 NM_001242630 54438 Hs.484686 NM_018988 HPRD:13574 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 561_WT_peak_1798 chr12 93322792 93322969 + 29 NA 5' UTR (NM_003566, exon 1 of 29) 5' UTR (NM_003566, exon 1 of 29) 227 NM_003566 8411 Hs.567367 NM_003566 HPRD:05460 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 561_WT_peak_6134 chr6 25992869 25993094 + 29 NA Intergenic CpG 25059 NM_005325 3024 Hs.150206 NM_005325 HPRD:00820 HIST1H1A H1.1|H1A|H1F1|HIST1 histone cluster 1, H1a protein-coding 561_WT_peak_1896 chr12 122028619 122028790 + 29 NA Intergenic Intergenic -9784 NM_032590 84678 Hs.524800 NM_032590 HPRD:12362 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine (K)-specific demethylase 2B protein-coding 561_WT_peak_2685 chr16 5083708 5083906 + 29 NA non-coding (NR_038913, exon 1 of 2) non-coding (NR_038913, exon 1 of 2) 104 NR_038913 100507589 Hs.729936 NR_038913 NAGPA-AS1 - NAGPA antisense RNA 1 ncRNA 561_WT_peak_1633 chr12 27175574 27175824 + 29 NA non-coding (NR_073464, exon 1 of 4) non-coding (NR_073464, exon 1 of 4) 244 NR_073463 9412 Hs.286145 NM_004264 HPRD:09156 MED21 SRB7|SURB7|hSrb7 mediator complex subunit 21 protein-coding 561_WT_peak_7511-2 chrX 21858209 21858302 + 29 NA intron (NM_015884, intron 1 of 10) intron (NM_015884, intron 1 of 10) 599 NM_015884 51360 Hs.443490 NM_015884 HPRD:02243 MBTPS2 BRESEK|IFAP|KFSD|KFSDX|OLMSX|S2P membrane-bound transcription factor peptidase, site 2 protein-coding 561_WT_peak_10 chr1 1209111 1209344 + 29 NA promoter-TSS (NM_058167) promoter-TSS (NM_058167) 7 NM_058167 118424 Hs.191987 NM_058167 HPRD:15600 UBE2J2 NCUBE-2|NCUBE2|PRO2121 ubiquitin-conjugating enzyme E2, J2 protein-coding 561_WT_peak_2249 chr14 62061181 62061388 + 29 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -23913 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 561_WT_peak_2648 chr16 1429387 1429557 + 29 NA intron (NM_001193388, intron 10 of 14) CpG 212 NM_001276414 64718 Hs.643536 NM_023076 HPRD:15612 UNKL C16orf28|ZC3H5L|ZC3HDC5L unkempt family zinc finger-like protein-coding 561_WT_peak_6308 chr6 36563235 36563292 + 29 NA intron (NR_036610, intron 1 of 6) L1MB5|LINE|L1 1173 NM_003017 6428 Hs.405144 NM_003017 SRSF3 SFRS3|SRp20 serine/arginine-rich splicing factor 3 protein-coding 561_WT_peak_7511 chrX 21857999 21858112 + 29 NA intron (NM_015884, intron 1 of 10) CpG 399 NM_015884 51360 Hs.443490 NM_015884 HPRD:02243 MBTPS2 BRESEK|IFAP|KFSD|KFSDX|OLMSX|S2P membrane-bound transcription factor peptidase, site 2 protein-coding 561_WT_peak_4833 chr22 19419908 19420196 + 29 NA promoter-TSS (NM_003325) promoter-TSS (NM_003325) 16 NM_003776 64976 Hs.431307 NM_003776 MRPL40 MRP-L22|MRPL22|NLVCF|URIM mitochondrial ribosomal protein L40 protein-coding 561_WT_peak_6297 chr6 33872179 33872356 + 29 NA Intergenic Intergenic 5355 NR_106982 102466816 NR_106982 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 561_WT_peak_1986 chr13 33112891 33113079 + 29 NA promoter-TSS (NM_014887) promoter-TSS (NM_014887) 37 NM_001278432 10443 Hs.507680 NM_014887 HPRD:15119 N4BP2L2 92M18.3|CG005|PFAAP5 NEDD4 binding protein 2-like 2 protein-coding 561_WT_peak_2354 chr14 98444440 98444604 + 28 NA promoter-TSS (NR_015430) promoter-TSS (NR_015430) -61 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 C14orf64 - chromosome 14 open reading frame 64 ncRNA 561_WT_peak_6174 chr6 26474458 26474627 + 28 NA intron (NR_038992, intron 3 of 3) MER57C2|LTR|ERV1 8195 NR_038992 285819 Hs.575357 NR_038992 LOC285819 - uncharacterized LOC285819 ncRNA 561_WT_peak_6203 chr6 27441118 27441288 + 28 NA promoter-TSS (NM_007149) promoter-TSS (NM_007149) -306 NM_007149 7738 Hs.158174 NM_007149 HPRD:03785 ZNF184 - zinc finger protein 184 protein-coding 561_WT_peak_6536 chr6 159065265 159065451 + 28 NA intron (NM_001291603, intron 1 of 4) CpG 460 NM_006519 6993 Hs.445999 NM_006519 HPRD:15987 DYNLT1 CW-1|TCTEL1|tctex-1 dynein, light chain, Tctex-type 1 protein-coding 561_WT_peak_4798 chr21 40138968 40139188 + 28 NA intron (NR_027065, intron 1 of 6) intron (NR_027065, intron 1 of 6) 1820 NR_027066 400866 Hs.278704 NM_001001789 HPRD:10744 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 561_WT_peak_651 chr1 184020906 184021122 + 28 NA exon (NM_001127394, exon 1 of 4) exon (NM_001127394, exon 1 of 4) 229 NR_125335 116461 Hs.548197 NM_052965 HPRD:12292 TSEN15 C1orf19|sen15 TSEN15 tRNA splicing endonuclease subunit protein-coding 561_WT_peak_6369 chr6 71122727 71122984 + 28 NA promoter-TSS (NM_001105531) promoter-TSS (NM_001105531) -252 NM_020819 57579 Hs.211700 NM_020819 HPRD:11144 FAM135A KIAA1411 family with sequence similarity 135, member A protein-coding 561_WT_peak_1965 chr13 26760737 26760925 + 28 NA Intergenic CpG 35063 NM_183044 6049 Hs.136885 NM_005977 HPRD:05027 RNF6 - ring finger protein (C3H2C3 type) 6 protein-coding 561_WT_peak_27 chr1 2488049 2488349 + 28 NA intron (NM_003820, intron 1 of 7) intron (NM_003820, intron 1 of 7) 251 NR_037844 115110 Hs.132272 NR_026927 LOC115110 - uncharacterized LOC115110 ncRNA 561_WT_peak_6264 chr6 30525123 30525378 + 28 NA 5' UTR (NM_005275, exon 1 of 12) 5' UTR (NM_005275, exon 1 of 12) 121 NM_005275 2794 Hs.83147 NM_005275 HPRD:00879 GNL1 HSR1 guanine nucleotide binding protein-like 1 protein-coding 561_WT_peak_3872 chr19 50879583 50879968 + 28 NA promoter-TSS (NM_007121) promoter-TSS (NM_007121) 95 NM_001256647 7376 Hs.432976 NM_007121 HPRD:02660 NR1H2 LXR-b|LXRB|NER|NER-I|RIP15|UNR nuclear receptor subfamily 1, group H, member 2 protein-coding 561_WT_peak_2488 chr15 55559712 55559954 + 28 NA intron (NM_183234, intron 1 of 6) intron (NM_183234, intron 1 of 6) 2651 NM_183234 5873 Hs.654978 NM_004580 HPRD:04845 RAB27A GS2|HsT18676|RAB27|RAM RAB27A, member RAS oncogene family protein-coding 561_WT_peak_4850 chr22 21983457 21983634 + 28 NA intron (NM_001017964, intron 3 of 4) CpG-17595 795 NM_001017964 150223 Hs.355952 NM_001017964 HPRD:18559 YDJC - YdjC homolog (bacterial) protein-coding 561_WT_peak_6655 chr7 44079959 44080220 + 28 NA non-coding (NR_015401, exon 2 of 3) non-coding (NR_015401, exon 2 of 3) 133 NR_024116 401331 Hs.530089 NR_024116 RASA4CP RASA4P RAS p21 protein activator 4C, pseudogene pseudo 561_WT_peak_2008 chr13 41635547 41635766 + 28 NA promoter-TSS (NM_007187) promoter-TSS (NM_007187) -41 NM_007187 11193 Hs.411300 NM_007187 HPRD:16086 WBP4 FBP21 WW domain binding protein 4 protein-coding 561_WT_peak_915 chr10 22971288 22971472 + 28 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 32123 NM_005028 5305 Hs.57079 NM_005028 HPRD:11931 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase, type II, alpha protein-coding 561_WT_peak_4152 chr2 74699693 74700094 + 28 NA promoter-TSS (NM_053050) promoter-TSS (NM_053050) 49 NM_053050 116540 Hs.534527 NM_053050 MRPL53 L53MT mitochondrial ribosomal protein L53 protein-coding 561_WT_peak_186 chr1 38325069 38325213 + 28 NA intron (NM_005955, intron 1 of 10) intron (NM_005955, intron 1 of 10) 151 NM_005955 4520 Hs.471991 NM_005955 HPRD:02546 MTF1 MTF-1|ZRF metal-regulatory transcription factor 1 protein-coding 561_WT_peak_5526 chr4 84047092 84047161 + 28 NA Intergenic AluSz|SINE|Alu -11215 NM_001130715 51316 Hs.546392 NM_016619 HPRD:06335 PLAC8 C15|DGIC|onzin placenta-specific 8 protein-coding 561_WT_peak_4373 chr2 175499283 175499385 + 28 NA promoter-TSS (NM_003387) promoter-TSS (NM_003387) -27 NM_003387 7456 Hs.128067 NM_003387 HPRD:03835 WIPF1 PRPL-2|WASPIP|WIP WAS/WASL interacting protein family, member 1 protein-coding 561_WT_peak_7128 chr8 123931253 123931491 + 28 NA intron (NM_014943, intron 2 of 3) intron (NM_014943, intron 2 of 3) 123291 NM_024295 79139 Hs.241576 NM_024295 HPRD:12302 DERL1 DER-1|DER1 derlin 1 protein-coding 561_WT_peak_5755 chr5 54830488 54830711 + 28 NA promoter-TSS (NR_001575) promoter-TSS (NR_001575) -229 NR_001575 379013 Hs.745164 NR_001575 RNF138P1 - ring finger protein 138, E3 ubiquitin protein ligase pseudogene 1 pseudo 561_WT_peak_6099 chr6 11224783 11224968 + 28 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) 8040 NM_182966 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 561_WT_peak_6298 chr6 34150617 34150830 + 27 NA Intergenic MLT1K|LTR|ERVL-MaLR -27324 NM_001256809 2914 Hs.429018 NM_000841 HPRD:04978 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate receptor, metabotropic 4 protein-coding 561_WT_peak_6496 chr6 141130859 141131029 + 27 NA Intergenic L1MB8|LINE|L1 125993 NR_039675 100616180 NR_039675 miRBase:MI0016816 MIR4465 - microRNA 4465 ncRNA 561_WT_peak_6550 chr6 161695075 161695242 + 27 NA promoter-TSS (NM_020133) promoter-TSS (NM_020133) -51 NM_020133 56895 Hs.353175 NM_020133 HPRD:12437 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 561_WT_peak_366 chr1 110527309 110527495 + 27 NA promoter-TSS (NM_006621) promoter-TSS (NM_006621) 15 NM_001242673 10768 Hs.743973 NM_006621 HPRD:07613 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase-like 1 protein-coding 561_WT_peak_3548 chr19 572190 572375 + 27 NA promoter-TSS (NM_001728) promoter-TSS (NM_001728) -172 NM_001728 682 Hs.501293 NM_001728 HPRD:00176 BSG 5F7|CD147|EMMPRIN|M6|OK|TCSF basigin (Ok blood group) protein-coding 561_WT_peak_3565 chr19 2096276 2096446 + 27 NA promoter-TSS (NM_130807) promoter-TSS (NM_130807) -92 NM_130807 126308 Hs.744938 NM_130807 HPRD:17583 MOB3A MOB1C|MOBKL2A|moblak MOB kinase activator 3A protein-coding 561_WT_peak_5964 chr5 141303083 141303356 + 27 NA promoter-TSS (NM_014773) promoter-TSS (NM_014773) -166 NM_001142603 9812 Hs.210532 NM_014773 HPRD:13780 KIAA0141 DELE KIAA0141 protein-coding 561_WT_peak_5618 chr4 151749402 151749532 + 27 NA exon (NM_001199282, exon 30 of 57) exon (NM_001199282, exon 30 of 57) 186952 NM_001199282 987 Hs.480938 NM_006726 HPRD:07344 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS-responsive vesicle trafficking, beach and anchor containing protein-coding 561_WT_peak_5793 chr5 69006633 69006966 + 27 NA promoter-TSS (NR_027386).2 promoter-TSS (NR_027386).2 -445 NR_027386 653188 Hs.631974 NR_027386 ENSG00000253203 GUSBP3 - glucuronidase, beta pseudogene 3 pseudo 561_WT_peak_714 chr1 208046721 208046891 + 26 NA Intergenic Intergenic 37877 NM_001025109 947 Hs.374990 NM_001773 HPRD:00790 CD34 - CD34 molecule protein-coding 561_WT_peak_4331 chr2 152266345 152266579 + 26 NA promoter-TSS (NM_001177664) promoter-TSS (NM_001177664) 62 NM_001177664 55183 Hs.655671 NM_018151 HPRD:10603 RIF1 - replication timing regulatory factor 1 protein-coding 561_WT_peak_4441 chr2 202125348 202125364 + 26 NA intron (NM_033356, intron 1 of 7) intron (NM_033356, intron 1 of 7) 133 NM_033356 841 Hs.599762 NM_001228 HPRD:03459 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8, apoptosis-related cysteine peptidase protein-coding 561_WT_peak_1852 chr12 110906254 110906428 + 26 NA promoter-TSS (NM_001164373) promoter-TSS (NM_001164373) 109 NM_013300 29902 Hs.436618 NM_013300 HPRD:17119 FAM216A C12orf24|HSU79274 family with sequence similarity 216, member A protein-coding 561_WT_peak_2356 chr14 99398498 99398642 + 26 NA Intergenic Intergenic 220620 NM_182560 283598 Hs.448754 NM_182560 HPRD:08075 C14orf177 - chromosome 14 open reading frame 177 protein-coding 561_WT_peak_3883 chr19 52552467 52552728 + 26 NA promoter-TSS (NM_014650) promoter-TSS (NM_014650) -524 NM_014650 9668 Hs.655934 NM_014650 HPRD:11716 ZNF432 - zinc finger protein 432 protein-coding 561_WT_peak_792 chr1 231748613 231748745 + 26 NA promoter-TSS (NR_034037) promoter-TSS (NR_034037) -843 NR_034037 100287814 Hs.25555 NR_034037 ENSG00000229228 LINC00582 - long intergenic non-protein coding RNA 582 ncRNA 561_WT_peak_5453 chr4 40057505 40057708 + 26 NA promoter-TSS (NM_018177) promoter-TSS (NM_018177) -918 NM_018177 55728 Hs.391463 NM_018177 HPRD:11382 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 561_WT_peak_5053 chr3 33034234 33034471 + 25 NA Intergenic Intergenic 41286 NM_005508 1233 Hs.184926 NM_005508 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 chemokine (C-C motif) receptor 4 protein-coding 561_WT_peak_5255 chr3 130569059 130569320 + 25 NA promoter-TSS (NM_001199180) promoter-TSS (NM_001199180) -180 NM_001199182 27032 Hs.584884 NM_014382 HPRD:05089 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase, Ca++ transporting, type 2C, member 1 protein-coding 561_WT_peak_1276 chr11 47600313 47600549 + 25 NA promoter-TSS (NM_004551) promoter-TSS (NM_004551) 90 NM_016506 55709 Hs.718483 NM_016506 HPRD:13757 KBTBD4 BKLHD4|HSPC252 kelch repeat and BTB (POZ) domain containing 4 protein-coding 561_WT_peak_2790 chr16 30886711 30886881 + 25 NA promoter-TSS (NR_039744) promoter-TSS (NR_039744) 15 NR_110941 101928736 Hs.303197 NR_110940 LOC101928736 - uncharacterized LOC101928736 ncRNA 561_WT_peak_5635 chr4 166248408 166248653 + 25 NA promoter-TSS (NM_006745) promoter-TSS (NM_006745) -288 NM_001017369 6307 Hs.105269 NM_006745 HPRD:07396 MSMO1 DESP4|ERG25|SC4MOL methylsterol monooxygenase 1 protein-coding 561_WT_peak_401 chr1 116920624 116920828 + 25 NA intron (NM_001160233, intron 1 of 22) intron (NM_001160233, intron 1 of 22) 4237 NM_001160233 476 Hs.371889 NM_000701 HPRD:01662 ATP1A1 - ATPase, Na+/K+ transporting, alpha 1 polypeptide protein-coding 561_WT_peak_3774 chr19 41859966 41860181 + 25 NA promoter-TSS (NM_000660) promoter-TSS (NM_000660) -235 NM_000660 7040 Hs.645227 NM_000660 TGFB1 CED|DPD1|LAP|TGFB|TGFbeta transforming growth factor, beta 1 protein-coding 561_WT_peak_1133 chr10 104159296 104159475 + 25 NA exon (NM_001261403, exon 13 of 22) exon (NM_001261403, exon 13 of 22) 4032 NM_001261403 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 561_WT_peak_2793 chr16 31085617 31085873 + 24 NA promoter-TSS (NM_001172668) promoter-TSS (NM_001172668) 2 NM_014699 9726 Hs.119273 NM_014699 HPRD:15886 ZNF646 - zinc finger protein 646 protein-coding 561_WT_peak_4809 chr21 43826579 43826757 + 24 NA intron (NM_001001895, intron 2 of 13) intron (NM_001001895, intron 2 of 13) 2697 NM_001001895 53347 Hs.473912 NM_018961 HPRD:06904 UBASH3A CLIP4|STS-2|TULA|TULA-1 ubiquitin associated and SH3 domain containing A protein-coding 561_WT_peak_230 chr1 51425747 51425999 + 24 NA promoter-TSS (NM_007051) promoter-TSS (NM_007051) 63 NM_007051 11124 Hs.530402 NM_007051 HPRD:05124 FAF1 HFAF1s|UBXD12|UBXN3A|hFAF1 Fas (TNFRSF6) associated factor 1 protein-coding 561_WT_peak_1695 chr12 51158284 51158526 + 24 NA intron (NM_005171, intron 1 of 6) CpG 616 NM_005171 466 Hs.648565 NM_005171 HPRD:00440 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 561_WT_peak_3449 chr18 18690944 18691148 + 24 NA 5' UTR (NM_005406, exon 1 of 33) 5' UTR (NM_005406, exon 1 of 33) 766 NM_005406 6093 Hs.306307 NM_005406 ROCK1 P160ROCK|ROCK-I Rho-associated, coiled-coil containing protein kinase 1 protein-coding 561_WT_peak_204 chr1 43147645 43147820 + 24 NA promoter-TSS (NM_004559) promoter-TSS (NM_004559) -334 NM_004559 4904 Hs.473583 NM_004559 HPRD:01095 YBX1 BP-8|CSDA2|CSDB|DBPB|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y box binding protein 1 protein-coding 561_WT_peak_4398 chr2 191746457 191746834 + 24 NA intron (NM_001256310, intron 1 of 14) intron (NM_001256310, intron 1 of 14) 1098 NM_014905 2744 Hs.116448 NM_014905 HPRD:00700 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 561_WT_peak_7472 chr9 136009408 136009591 + 24 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) -2955 NM_001271774 5900 Hs.106185 NM_006266 HPRD:03371 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 561_WT_peak_4785 chr21 36260515 36260685 + 24 NA 5' UTR (NM_001001890, exon 1 of 6) 5' UTR (NM_001001890, exon 1 of 6) 387 NM_001122607 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 561_WT_peak_876 chr10 8179484 8179812 + 24 NA Intergenic Intergenic 82981 NM_001002295 2625 Hs.524134 NM_002051 HPRD:00572 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 561_WT_peak_979 chr10 43915730 43915947 + 24 NA Intergenic Intergenic -11142 NM_001098204 3185 Hs.808 NM_004966 HPRD:03023 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 561_WT_peak_4753 chr21 26934510 26934839 + 24 NA intron (NR_001458, intron 1 of 2) CpG 217 NR_001458 114614 Hs.697120 NR_001458 ENSG00000234883 MIR155HG BIC|MIRHG2|NCRNA00172 MIR155 host gene (non-protein coding) ncRNA 561_WT_peak_5622 chr4 153457092 153457504 + 24 NA promoter-TSS (NR_033797) promoter-TSS (NR_033797) -118 NR_033797 54553 Hs.142307 NR_033797 ENSG00000268471 DKFZP434I0714 - uncharacterized protein DKFZP434I0714 ncRNA 561_WT_peak_4262 chr2 113012087 113012550 + 24 NA intron (NM_032494, intron 1 of 8) CpG 346 NM_032494 84524 Hs.418416 NM_032494 HPRD:11695 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 561_WT_peak_555 chr1 156024349 156024566 + 23 NA promoter-TSS (NM_020131) promoter-TSS (NM_020131) -60 NM_001145264 28956 Hs.632483 NM_014017 HPRD:17463 LAMTOR2 ENDAP|HSPC003|MAPBPIP|MAPKSP1AP|ROBLD3|Ragulator2|p14 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 protein-coding 561_WT_peak_1306 chr11 60828720 60828951 + 23 NA Intergenic Intergenic -41095 NM_014207 921 Hs.58685 NM_014207 HPRD:01078 CD5 LEU1|T1 CD5 molecule protein-coding 561_WT_peak_1858 chr12 111180873 111181062 + 23 NA promoter-TSS (NM_002710) promoter-TSS (NM_002710) -184 NM_002710 5501 Hs.79081 NM_002710 HPRD:08911 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1, catalytic subunit, gamma isozyme protein-coding 561_WT_peak_7372 chr9 101855470 101855657 + 23 NA Intergenic Intergenic -11849 NM_001130916 7046 Hs.494622 NM_004612 HPRD:01822 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TGFR-1 transforming growth factor, beta receptor 1 protein-coding 561_WT_peak_6549 chr6 160941492 160941793 + 23 NA Intergenic LTR12E|LTR|ERV1 -9486 NR_028093 80350 Hs.654503 NM_024492 HPRD:17441 LPAL2 APOA2|APOAL|APOARGC lipoprotein, Lp(a)-like 2, pseudogene pseudo 561_WT_peak_3394 chr17 80186256 80186443 + 23 NA promoter-TSS (NM_001042422) promoter-TSS (NM_001042422) 67 NM_001206950 9123 Hs.500761 NM_004207 HPRD:04854 SLC16A3 MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4 solute carrier family 16 (monocarboxylate transporter), member 3 protein-coding 561_WT_peak_574 chr1 160231533 160231863 + 23 NA intron (NM_015726, intron 1 of 13) intron (NM_015726, intron 1 of 13) 579 NR_028106 50717 Hs.632447 NM_015726 HPRD:18300 DCAF8 GAN2|H326|WDR42A DDB1 and CUL4 associated factor 8 protein-coding 561_WT_peak_2566 chr15 78729965 78730111 + 23 NA promoter-TSS (NM_004136) promoter-TSS (NM_004136) -480 NM_004136 3658 Hs.436031 NM_004136 HPRD:08858 IREB2 ACO3|IRP2|IRP2AD iron-responsive element binding protein 2 protein-coding 561_WT_peak_164 chr1 33592745 33592760 + 22 NA Intergenic Intergenic 46038 NM_001293562 113451 Hs.101807 NM_052998 HPRD:17657 AZIN2 ADC|AZI2|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 561_WT_peak_226 chr1 46216627 46216766 + 22 NA promoter-TSS (NM_005897) promoter-TSS (NM_005897) -211 NM_005897 3652 Hs.744252 NM_005897 HPRD:00940 IPP KLHL27 intracisternal A particle-promoted polypeptide protein-coding 561_WT_peak_1129 chr10 103912296 103912532 + 21 NA intron (NM_004741, intron 1 of 12) CpG 481 NM_001284389 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 561_WT_peak_5662 chr5 392675 393025 + 21 NA intron (NM_020731, intron 4 of 11) intron (NM_020731, intron 4 of 11) 50408 NM_138464 116349 Hs.446702 NM_138464 ENSG00000221990 C5orf55 - chromosome 5 open reading frame 55 protein-coding 561_WT_peak_246 chr1 53791737 53792057 + 21 NA intron (NM_001018054, intron 2 of 17) CpG 1924 NM_004631 7804 Hs.280387 NM_004631 LRP8 APOER2|HSZ75190|LRP-8|MCI1 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor protein-coding 561_WT_peak_6905 chr7 151329739 151329828 + 21 NA promoter-TSS (NM_024429) promoter-TSS (NM_024429) -439 NM_024429 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 561_WT_peak_1345 chr11 65149622 65149871 + 21 NA 5' UTR (NM_001278250, exon 1 of 5) 5' UTR (NM_001278250, exon 1 of 5) 111 NM_001300820 283130 Hs.661604 NM_182556 HPRD:14142 SLC25A45 - solute carrier family 25, member 45 protein-coding 561_WT_peak_1367 chr11 65624643 65624939 + 20 NA intron (NM_005507, intron 1 of 3) CpG 1013 NM_005507 1072 Hs.170622 NM_005507 HPRD:03261 CFL1 CFL|HEL-S-15 cofilin 1 (non-muscle) protein-coding 561_WT_peak_5627 chr4 156874810 156875040 + 20 NA exon (NM_001334, exon 1 of 8) exon (NM_001334, exon 1 of 8) 123 NM_001334 1519 Hs.75262 NM_001334 HPRD:02772 CTSO CTSO1 cathepsin O protein-coding