PeakID (cmd=annotatePeaks.pl /home/sierramc/tox2/ChIPseq/motif_analysis/wt_background.bed hg19 -m motif10.motif motif11.motif motif12.motif motif13.motif motif14.motif motif15.motif motif16.motif motif17.motif motif18.motif motif19.motif motif1.motif motif20.motif motif21.motif motif22.motif motif23.motif motif24.motif motif25.motif motif26.motif motif27.motif motif28.motif motif2.motif motif3.motif motif4.motif motif5.motif motif6.motif motif7.motif motif8.motif motif9.motif) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type CpG% GC% 12-TCGCCCTCCTCC,BestGuess:MA0528.1_ZNF263/Jaspar(0.702) Distance From Peak(sequence,strand,conservation) 14-NDVNYCGDNNNN,BestGuess:Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer(0.717) Distance From Peak(sequence,strand,conservation) 13-GGCGGCCGAG,BestGuess:ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(0.618) Distance From Peak(sequence,strand,conservation) 10-AAGCGGCT,BestGuess:PH0115.1_Nkx2-6/Jaspar(0.701) Distance From Peak(sequence,strand,conservation) 16-CCGCCTTCCCGG,BestGuess:Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer(0.625) Distance From Peak(sequence,strand,conservation) 11-TCGACGCC,BestGuess:PB0113.1_E2F3_2/Jaspar(0.681) Distance From Peak(sequence,strand,conservation) 19-GAGCGCCAGCCC,BestGuess:MA0506.1_NRF1/Jaspar(0.649) Distance From Peak(sequence,strand,conservation) 14-CGCGTACG,BestGuess:PB0094.1_Zfp128_1/Jaspar(0.695) Distance From Peak(sequence,strand,conservation) 15-CCGACCGA,BestGuess:PB0179.1_Sp100_2/Jaspar(0.573) Distance From Peak(sequence,strand,conservation) 20-TCCCGGCCCT,BestGuess:Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.761) Distance From Peak(sequence,strand,conservation) 1-GCCGGGGG,BestGuess:PB0164.1_Smad3_2/Jaspar(0.686) Distance From Peak(sequence,strand,conservation) 17-TCGTGCCG,BestGuess:HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer(0.647) Distance From Peak(sequence,strand,conservation) 20-CGGAAGAAGCGG,BestGuess:MA0062.2_GABPA/Jaspar(0.663) Distance From Peak(sequence,strand,conservation) 19-CGTCGCTA,BestGuess:PB0056.1_Rfxdc2_1/Jaspar(0.743) Distance From Peak(sequence,strand,conservation) 21-CCCTCTCAGCCC,BestGuess:Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer(0.629) Distance From Peak(sequence,strand,conservation) 20-CGTCGGAC,BestGuess:PB0179.1_Sp100_2/Jaspar(0.614) Distance From Peak(sequence,strand,conservation) 21-CAAAACCG,BestGuess:MF0009.1_TRP(MYB)_class/Jaspar(0.681) Distance From Peak(sequence,strand,conservation) 22-CGGGTAAA,BestGuess:PB0153.1_Nr2f2_2/Jaspar(0.680) Distance From Peak(sequence,strand,conservation) 24-GGGAGCCGAAGG,BestGuess:POL013.1_MED-1/Jaspar(0.640) Distance From Peak(sequence,strand,conservation) 25-GAAACAGGAAGC,BestGuess:Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer(0.798) Distance From Peak(sequence,strand,conservation) 2-RCCGCGCA,BestGuess:PB0199.1_Zfp161_2/Jaspar(0.810) Distance From Peak(sequence,strand,conservation) 3-GCGGGGCCAGCG,BestGuess:Sp1(Zf)/Promoter/Homer(0.696) Distance From Peak(sequence,strand,conservation) 4-CGCGGAGCCGCG,BestGuess:POL013.1_MED-1/Jaspar(0.687) Distance From Peak(sequence,strand,conservation) 4-GGGCCGAKTT,BestGuess:POL003.1_GC-box/Jaspar(0.654) Distance From Peak(sequence,strand,conservation) 6-CKACTCGG,BestGuess:PB0199.1_Zfp161_2/Jaspar(0.534) Distance From Peak(sequence,strand,conservation) 7-GCCGCCATGGCS,BestGuess:Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.695) Distance From Peak(sequence,strand,conservation) 7-GCTGCGAAGC,BestGuess:POL013.1_MED-1/Jaspar(0.627) Distance From Peak(sequence,strand,conservation) 11-GCGGCCTGGCTG,BestGuess:ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer(0.681) Distance From Peak(sequence,strand,conservation) 127 chr15 51583693 51584128 + 0 NA intron (NM_000103, intron 1 of 9) intron (NM_000103, intron 1 of 9) 46885 NM_000103 1588 Hs.260074 NM_000103 HPRD:00488 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450, family 19, subfamily A, polypeptide 1 protein-coding 0.009195 0.442661 32 chr17 3468760 3468994 + 0 NA 3' UTR (NM_080704, exon 17 of 17) 3' UTR (NM_080704, exon 17 of 17) -7588 NM_001258205 162514 Hs.446255 NM_145068 HPRD:06141 TRPV3 OLMS|VRL3 transient receptor potential cation channel, subfamily V, member 3 protein-coding 0.008547 0.468085 90 chr15 89445702 89445892 + 0 NA intron (NM_001114614, intron 5 of 6) intron (NM_001114614, intron 5 of 6) -7027 NM_178232 145864 Hs.447530 NM_178232 HPRD:13629 HAPLN3 EXLD1|HsT19883 hyaluronan and proteoglycan link protein 3 protein-coding 0.010526 0.554974 39(CCGGGAAGCTGG,-,0.00) 31(GGGCTGGCCCGG,-,0.00) 22(GGCCTGTGAGGG,-,0.00) 206 chr12 14538084 14538328 + 0 NA 5' UTR (NM_181352, exon 1 of 15) 5' UTR (NM_181352, exon 1 of 15) 208 NM_181352 55729 Hs.504856 NM_018179 HPRD:09811 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 0.000000 0.444898 118 chr6_mann_hap4 4492718 4492966 + 0 NA intron (NM_001242524, intron 5 of 5).5 MSTB1|LTR|ERVL-MaLR 6152 NM_033554 3113 Hs.347270 NM_033554 HPRD:00835 HLA-DPA1 DP(W3)|DP(W4)|HLA-DP1A|HLADP|HLASB|PLT1 major histocompatibility complex, class II, DP alpha 1 protein-coding 0.012097 0.413655 4(CGCGTACA,+,0.00) 71 chr5 55030995 55031285 + 0 NA Intergenic Intergenic -2705 NM_001166533 54514 Hs.223581 NM_019039 HPRD:05593 DDX4 VASA DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 protein-coding 0.000000 0.271478 102 chr2 232648142 232648567 + 0 NA intron (NM_001282949, intron 1 of 5) L1ME3|LINE|L1 1973 NM_001282951 64708 Hs.335061 NM_022730 HPRD:09889 COPS7B CSN7B|SGN7b COP9 signalosome subunit 7B protein-coding 0.009412 0.424883 200 chr11 75479175 75479440 + 0 NA promoter-TSS (NM_032564) promoter-TSS (NM_032564) 385 NR_046090 283214 Hs.591972 NR_046090 ENSG00000247867 LOC283214 - uncharacterized LOC283214 ncRNA 0.026415 0.552632 125(CAAAAGCG,+,0.00) -49(GCCCCCCAGC,-,0.00) 18 chr9 138388641 138389165 + 0 NA intron (NM_001048265, intron 2 of 2) AluSq2|SINE|Alu 2858 NM_001048265 138162 Hs.414028 NM_144654 HPRD:12937 C9orf116 PIERCE1|RbEST47 chromosome 9 open reading frame 116 protein-coding 0.030534 0.521905 149(CTCGGCCTCC,-,0.00) 82(TAGAGACG,-,0.00) -37(CCATCTCAGCTC,+,0.00) 145(CCGCCTCG,-,0.00) 125 chr12 113418974 113419286 + 0 NA intron (NM_001032731, intron 1 of 1) L1MA4|LINE|L1 2856 NM_016817 4939 Hs.414332 NM_002535 HPRD:04518 OAS2 - 2'-5'-oligoadenylate synthetase 2, 69/71kDa protein-coding 0.003205 0.329073 138(GGGCCTAGTT,+,0.00) 16 chr19 58146821 58147094 + 0 NA intron (NM_006385, intron 3 of 3) L1MB3|LINE|L1 2422 NR_049752 10520 Hs.590977 NM_006385 HPRD:03512 ZNF211 C2H2-25|CH2H2-25|ZNF-25|ZNFC25 zinc finger protein 211 protein-coding 0.003663 0.339416 44 chr12 4543950 4544147 + 0 NA intron (NM_020996, intron 2 of 2) MIRc|SINE|MIR 10732 NM_020996 2251 Hs.166015 NM_020996 HPRD:00623 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 0.010152 0.540404 70(GGTGGAGGGGGA,-,0.00) 48(GGGAAGAAGGAG,+,0.00) 55 chr3 125819054 125819484 + 0 NA intron (NM_001164475, intron 1 of 9) L4|LINE|RTE 1122 NM_001164475 54946 Hs.573007 NM_017836 HPRD:11580 SLC41A3 SLC41A1-L2 solute carrier family 41, member 3 protein-coding 0.013953 0.498840 170(TCCCTGCCCT,+,0.00) 84 chr5 167183591 167184632 + 0 NA intron (NM_001122679, intron 2 of 28) L1PA7|LINE|L1 472268 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2 teneurin transmembrane protein 2 protein-coding 0.002882 0.413628 543(TCCCTCCCCT,+,0.00) 455(CAGTTTTG,-,0.00) 27 chr7 102132938 102133407 + 0 NA intron (NM_001277335, intron 16 of 19) AluSx1|SINE|Alu -13791 NM_006234 5439 Hs.654952 NM_006234 HPRD:16038 POLR2J POLR2J1|RPB11|RPB11A|RPB11m|hRPB14 polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa protein-coding 0.029851 0.519149 129(TGGCACGA,-,0.00) 255(TAGAGACG,-,0.00) 153(CCTCCGCCTCCC,-,0.00),321(CCTTGGCCTCCC,-,0.00) 195(CCGAGTAG,-,0.00) 317(CCCGCCTTGGCC,+,0.00) 233 chr8 7833045 7833255 + 0 NA TTS (NM_001256871) TTS (NM_001256871) 2357 NM_001256871 645836 Hs.741131 NM_001256871 USP17L3 USP17B|USP17F ubiquitin specific peptidase 17-like family member 3 protein-coding 0.028571 0.398104 -71(TGACCCGGAATC,+,0.00) 190 chr17 77748281 77748681 + 0 NA Intergenic Intergenic -3496 NM_005189 84733 Hs.368410 NM_005189 HPRD:14397 CBX2 CDCA6|M33|SRXY5 chromobox homolog 2 protein-coding 0.022500 0.600998 -89(CGGGGAAGGGGG,-,0.00) 91(CCCTCCCAGGCC,+,0.00) 110(GAAACAGCAGGC,+,0.00) 161 chr1 865448 865618 + 0 NA intron (NM_152486, intron 2 of 13) intron (NM_152486, intron 2 of 13) 4412 NM_152486 148398 Hs.335293 NM_152486 HPRD:10081 SAMD11 - sterile alpha motif domain containing 11 protein-coding 0.047059 0.672515 -18(CAGAACCG,+,0.00) 194 chr16 88786060 88786340 + 0 NA intron (NM_001142864, intron 43 of 50) intron (NM_001142864, intron 43 of 50) -3455 NR_039873 100616167 NR_039873 MIR4722 - microRNA 4722 ncRNA 0.060714 0.640569 21(CCCCCACCCCGG,+,0.00) -48(CGGCACCA,-,0.00) 30(CGGCGGAC,+,0.00) 95 chr14 74551616 74552009 + 0 NA promoter-TSS (NM_001278594) promoter-TSS (NM_001278594) 156 NM_001024674 91750 Hs.612866 NM_001024674 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 0.048346 0.553299 -85(TTTTCCCG,-,0.00),169(TTTCCCCG,-,0.00),223(TGGGTAAA,+,0.00) 57 chr2 233413283 233413685 + 0 NA exon (NM_145702, exon 1 of 1) exon (NM_145702, exon 1 of 1) 1742 NM_145702 200765 Hs.211823 NM_145702 HPRD:18185 TIGD1 EEYORE tigger transposable element derived 1 protein-coding 0.007463 0.406948 220 chrX 64732350 64732803 + 0 NA 3' UTR (NM_001170649, exon 13 of 13) 3' UTR (NM_001170649, exon 13 of 13) 22110 NM_001170649 81887 Hs.522675 NM_031206 HPRD:06519 LAS1L Las1-like|dJ475B7.2 LAS1-like (S. cerevisiae) protein-coding 0.006623 0.535242 92(ATGTGGCT,+,0.00) 220(CAGTTTTG,-,0.00) 20 chr1 218066736 218067095 + 0 NA intron (NR_048550, intron 1 of 3) intron (NR_048550, intron 1 of 3) 673 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 0.000000 0.336111 243 chr19 42728653 42728962 + 0 NA exon (NM_133444, exon 3 of 3) exon (NM_133444, exon 3 of 3) 4315 NM_133444 116115 Hs.137282 NM_133444 HPRD:15818 ZNF526 - zinc finger protein 526 protein-coding 0.009709 0.590323 99(TGGTGCCG,+,0.00) 40(GCTTGCTGTCTC,-,0.00) 231 chr16 3233605 3233987 + 0 NA Intergenic CpG -20451 NM_012360 4992 Hs.664502 NM_012360 HPRD:09125 OR1F1 OLFMF|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OR1F10|OR1F13P|OR1F4|OR1F5|OR1F6|OR1F7|OR1F8|OR1F9|OR3-145|ORL1023 olfactory receptor, family 1, subfamily F, member 1 protein-coding 0.057592 0.571802 81(AGCCGCCA,-,0.00) 273(CCGACCGC,+,0.00) 92(CGTCGAAC,+,0.00) -23(CCTTCGTCTCTC,-,0.00) -74(CCCGCCAGGGCC,+,0.00) 163 chr1 145210333 145210811 + 0 NA intron (NM_203458, intron 1 of 4) intron (NM_203458, intron 1 of 4) 1459 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 0.008368 0.396660 271(AAAGCAGCCC,-,0.00) 109 chr16 68119813 68120186 + 0 NA intron (NM_004555, intron 1 of 10) intron (NM_004555, intron 1 of 10) 730 NM_004555 4775 Hs.436585 NM_004555 HPRD:04077 NFATC3 NFAT4|NFATX nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 protein-coding 0.053619 0.489305 2(TCGACTCC,+,0.00) 9(CGGGACGA,-,0.00) -30(CGGGCTTGGCTG,+,0.00) 151 chr12 113341725 113342011 + 0 NA Intergenic MER4-int|LTR|ERV1 -2871 NM_016816 4938 Hs.524760 NM_002534 HPRD:08879 OAS1 IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1, 40/46kDa protein-coding 0.000000 0.327526 89 chr12 100863381 100863622 + 0 NA Intergenic MER63D|DNA|hAT-Blackjack -4050 NM_001206979 9971 Hs.282735 NM_005123 HPRD:04827 NR1H4 BAR|FXR|HRR-1|HRR1|RIP14 nuclear receptor subfamily 1, group H, member 4 protein-coding 0.004149 0.351240 175 chr10 48734987 48737026 + 0 NA Intergenic L1MC|LINE|L1 70979 NM_001042357 26095 Hs.440733 NM_015605 HPRD:10898 PTPN20B CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20 protein tyrosine phosphatase, non-receptor type 20B protein-coding 0.004414 0.304412 1434(GGGGTAAA,+,0.00) 148 chr17 38059518 38059761 + 0 NA Intergenic AluJr|SINE|Alu 14154 NM_018530 55876 Hs.306777 NM_018530 HPRD:17082 GSDMB GSDML|PRO2521 gasdermin B protein-coding 0.004115 0.491803 31 chr2 60772942 60773226 + 0 NA intron (NM_022893, intron 2 of 3) intron (NM_022893, intron 2 of 3) 7549 NM_018014 53335 Hs.370549 NM_018014 HPRD:05949 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A (zinc finger protein) protein-coding 0.021127 0.428070 57(TTTACCTG,-,0.00) 35 chr10 122212681 122213013 + 0 NA Intergenic Intergenic -3619 NM_001030059 196051 Hs.40479 NM_001030059 HPRD:18745 PPAPDC1A DPPL2|PPAPDC1 phosphatidic acid phosphatase type 2 domain containing 1A protein-coding 0.006024 0.498498 -54(GCTTCCTGCTTT,-,0.00) 11 chr1 153752630 153753139 + 0 NA TTS (NM_024330) TTS (NM_024330) 5116 NM_024330 11000 Hs.438723 NM_024330 HPRD:11967 SLC27A3 ACSVL3|FATP3|VLCS-3 solute carrier family 27 (fatty acid transporter), member 3 protein-coding 0.019646 0.570588 -45(GGCGTGGA,-,0.00) -22(TTCCTGCCCT,+,0.00) 266(GCCGGGCCTGGG,+,0.00) 344(GCCTCGCAGC,-,0.00) 208 chr16 20779553 20779869 + 0 NA intron (NM_005622, intron 1 of 13) MER5A1|DNA|hAT-Charlie 4399 NM_005622 6296 Hs.706754 NM_005622 HPRD:07033 ACSM3 SA|SAH acyl-CoA synthetase medium-chain family member 3 protein-coding 0.000000 0.403785 -54(CAAAACTG,+,0.00) 78 chr7 130034488 130034752 + 0 NA non-coding (NR_046443, exon 11 of 11) non-coding (NR_046443, exon 11 of 11) 14330 NM_001868 1357 Hs.2879 NM_001868 HPRD:00269 CPA1 CPA carboxypeptidase A1 (pancreatic) protein-coding 0.007576 0.445283 89(GCAACAGGAAGA,+,0.00) 93 chr12 133303954 133304258 + 0 NA intron (NM_015114, intron 12 of 12) CpG 16713 NM_001170543 192111 Hs.102558 NM_138575 HPRD:14681 PGAM5 BXLBV68 phosphoglycerate mutase family member 5 protein-coding 0.069079 0.632787 98(CCCTGGCACCGC,-,0.00),148(CCCTGGCACCGC,-,0.00) 106 chr6 109692684 109693261 + 0 NA intron (NM_001142401, intron 3 of 4) intron (NM_001142401, intron 3 of 4) 10790 NM_001142402 8763 Hs.520313 NM_006016 HPRD:04523 CD164 MGC-24|MUC-24|endolyn CD164 molecule, sialomucin protein-coding 0.005199 0.370242 -86(CCTTGGCCTCCC,-,0.00) -90(GCCGCCTTGGCC,+,0.00) 157 chr14 105517030 105517365 + 0 NA 3' UTR (NM_013345, exon 4 of 4) 3' UTR (NM_013345, exon 4 of 4) 14690 NM_001278696 29933 Hs.532504 NM_013345 HPRD:06936 GPR132 G2A G protein-coupled receptor 132 protein-coding 0.011940 0.630952 15(AGCCACCT,-,0.00) -81(CAGCCAGGCAGG,-,0.00),-77(CAGGCAGGCTGC,-,0.00) 65 chr6 49982053 49982699 + 0 NA intron (NM_001037728, intron 1 of 1) L2a|LINE|L2 7318 NM_001037728 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin, beta 110 locus protein-coding 0.004644 0.361669 -54(AAGTGGCT,+,0.00),1(AGAGACTT,-,0.00),521(AACCACTT,-,0.00) 136(CGGGAAAA,+,0.00) 29 chr18 11977832 11978339 + 0 NA Intergenic AluY|SINE|Alu -3342 NM_014214 3613 Hs.743311 NM_014214 HPRD:09329 IMPA2 - inositol(myo)-1(or 4)-monophosphatase 2 protein-coding 0.047337 0.511811 191(CTCGGCCTCC,-,0.00) 233(CGCCCGGC,-,0.00) 126(TAGAGACG,-,0.00) 229(ACCGCGCC,+,0.00) 179(GGATCCGCCC,-,0.00) -41(CCGAGAAG,-,0.00),66(CCGAGTAG,-,0.00),187(CCGCCTCG,-,0.00) -19(CACCCAGGCTGC,-,0.00) 197 chr19 23519086 23519525 + 0 NA Intergenic LTR9|LTR|ERV1 59057 NM_001300951 7644 Hs.654471 NM_003430 HPRD:04916 ZNF91 HPF7|HTF10 zinc finger protein 91 protein-coding 0.006834 0.431818 203 chr8 10385055 10385305 + 0 NA intron (NM_001197020, intron 1 of 4) MIR|SINE|MIR 2124 NM_198464 203074 Hs.591394 NM_198464 HPRD:07162 PRSS55 CT153|T-SP1|TSP1|UNQ9391 protease, serine, 55 protein-coding 0.020000 0.521912 -11(AGCCACAT,-,0.00) 10(GAGCACCAGCTC,+,0.00),33(GGCCTGGGGCTC,-,0.00) 138 chr1 859976 860468 + 0 NA promoter-TSS (NM_152486) promoter-TSS (NM_152486) -899 NM_152486 148398 Hs.335293 NM_152486 HPRD:10081 SAMD11 - sterile alpha motif domain containing 11 protein-coding 0.136179 0.756592 327(GCCTCCGGCTCG,-,0.00) 18(CTCGGCCACC,-,0.00) 378(CCCCCGCC,-,0.00) -41(CTGCACGA,-,0.00) 362(GGGCTGCGCGGG,-,0.00) 366(TGCGCGGG,-,0.00) -82(TGCTGGCCCCGC,-,0.00),283(CGCGGGCCCCGA,-,0.00) -73(CGCCGCTCCGCC,-,0.00) 15(CTTCTCGG,+,0.00),308(CCGACTCG,-,0.00),309(CGACTCGG,+,0.00) 21(GGCCACCGCGGC,-,0.00) -77(GCCCCGCCGC,-,0.00) 199 chr22 35808633 35808917 + 0 NA intron (NM_006739, intron 8 of 16) intron (NM_006739, intron 8 of 16) 12659 NM_006739 4174 Hs.517582 NM_006739 HPRD:04075 MCM5 CDC46|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 0.014085 0.592982 -30(AGGCGGCT,+,0.00),101(TAGTGGCT,+,0.00) 114 chr2 208573307 208573603 + 0 NA Intergenic AluSx|SINE|Alu -2809 NM_001142300 151195 Hs.471234 NM_152523 HPRD:08809 CCNYL1 - cyclin Y-like 1 protein-coding 0.010135 0.471380 75(CCGAGTAG,-,0.00) 97(GCCACCATGTCC,+,0.00) 226 chr12 66581088 66581396 + 0 NA Intergenic AluJb|SINE|Alu -1736 NM_001142523 11213 Hs.369265 NM_007199 HPRD:05123 IRAK3 ASRT5|IRAKM interleukin-1 receptor-associated kinase 3 protein-coding 0.012987 0.553398 65(CGTCTCTA,+,0.00) 58 chr4 129808965 129809197 + 0 NA intron (NM_144643, intron 20 of 20) intron (NM_144643, intron 20 of 20) 76082 NM_001287443 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 0.000000 0.283262 211 chrX 130194459 130194873 + 0 NA intron (NM_001282607, intron 1 of 11) L3|LINE|CR1 2450 NM_144967 158763 Hs.22905 NM_144967 HPRD:06547 ARHGAP36 - Rho GTPase activating protein 36 protein-coding 0.004831 0.414458 153 chr1 20012467 20012710 + 0 NA intron (NM_181719, intron 15 of 15) MIRb|SINE|MIR 20808 NM_000871 3362 Hs.22180 NM_000871 HPRD:03066 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled protein-coding 0.024691 0.545082 -100(CTCGGCCTCC,-,0.00) -58(CGCCCGGC,-,0.00) 15 chr1 46770460 46770662 + 0 NA intron (NM_001297566, intron 1 of 2) intron (NM_001297566, intron 1 of 2) 1276 NM_006004 7388 Hs.481571 NM_006004 HPRD:15629 UQCRH QCR6|UQCR8 ubiquinol-cytochrome c reductase hinge protein protein-coding 0.024752 0.472906 -62(GCGGCCAAGC,+,0.00) 137 chr1 205055608 205056005 + 0 NA 3' UTR (NM_001193273, exon 14 of 14) 3' UTR (NM_001193273, exon 14 of 14) -2218 NM_203376 388730 Hs.146928 NM_203376 HPRD:14205 TMEM81 HC3107|KVLA2788|UNQ2788 transmembrane protein 81 protein-coding 0.005038 0.412060 -96(CTCGGCCTCC,-,0.00) -10(AGGGCAGGGA,-,0.00) 257(CCCTCTAAGTCC,+,0.00) -61(GCCACCATGCCC,+,0.00) 81 chr6_ssto_hap7 2892005 2892335 + 0 NA promoter-TSS (NM_001145467).5 promoter-TSS (NM_001145467).5 -607 NM_001145466 259197 Hs.509513 NM_147130 HPRD:11384 NCR3 1C7|CD337|LY117|MALS|NKp30 natural cytotoxicity triggering receptor 3 protein-coding 0.018182 0.543807 138(CTGTTTTG,-,0.00) 133(GATTCCTGTTTT,-,0.00) 60 chr14 91577563 91577746 + 0 NA Intergenic AluSc|SINE|Alu -2703 NM_024952 80017 Hs.309849 NM_024952 HPRD:16612 C14orf159 - chromosome 14 open reading frame 159 protein-coding 0.016393 0.423913 -3(GTGGCCAGGCTG,+,0.00) 101 chr15 71841913 71842258 + 0 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 2544 NM_001286429 79875 Hs.387057 NM_024817 HPRD:07835 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 0.023188 0.494220 -63(GGCGTCGT,-,0.00) -58(CGTCACTA,+,0.00) 73 chr12 133706033 133706510 + 0 NA promoter-TSS (NM_015394) promoter-TSS (NM_015394) 788 NM_001277291 101060200 Hs.614816 NM_001277291 ZNF891 - zinc finger protein 891 protein-coding 0.023061 0.414226 32(GGAGGCGGGCGG,-,0.00) 39(GGCGGGGG,+,0.00) 45(GGGCGGTGAGGG,-,0.00) 86 chr4 153243411 153243581 + 0 NA 3' UTR (NM_001013415, exon 11 of 11) 3' UTR (NM_001013415, exon 11 of 11) -15311 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 DEAR DEspR dual endothelin-1(VEGFsp)/angiotensin II receptor pseudogene pseudo 0.000000 0.309942 76 chr7 92077616 92078058 + 0 NA intron (NR_052016, intron 1 of 5) intron (NR_052016, intron 1 of 5) 1075 NR_052016 57798 Hs.21145 NM_021167 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 0.020362 0.406321 126(AGACGCCT,-,0.00) 170(CGGTTTTA,-,0.00) 62 chr3 150262441 150263139 + 0 NA intron (NM_014445, intron 2 of 2) intron (NM_014445, intron 2 of 2) 1638 NM_014445 27230 Hs.713956 NM_014445 HPRD:18037 SERP1 RAMP4 stress-associated endoplasmic reticulum protein 1 protein-coding 0.005731 0.317597 352(AAGTGTCT,+,0.00) 247 chr5 69348179 69348382 + 0 NA intron (NM_022875, intron 1 of 7).2 AluSq|SINE|Alu 2930 NM_022874 6606 Hs.535788 NM_000344 HPRD:02646 SMN1 BCD541|GEMIN1|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMNT|T-BCD541|TDRD16A survival of motor neuron 1, telomeric protein-coding 0.014778 0.441176 -26(CTACTCGG,+,0.00) 67 chr9 36843413 36844002 + 0 NA intron (NM_001280550, intron 6 of 6) MLT1N2|LTR|ERVL-MaLR -20111 NR_039686 100616289 NR_039686 miRBase:MI0016827 MIR4475 - microRNA 4475 ncRNA 0.005093 0.535593 361(CGGGAAAA,+,0.00) 204 chr19 50312834 50313113 + 0 NA intron (NR_033269, intron 4 of 9) intron (NR_033269, intron 4 of 9) 3594 NR_033269 80199 Hs.288800 NM_025129 HPRD:08662 FUZ FY|NTD fuzzy planar cell polarity protein protein-coding 0.039427 0.560714 -49(AGCGACTT,-,0.00) 130(CGGGCAAA,+,0.00) -10(CAGCCAGCCCCG,-,0.00) 241 chr13 19377607 19378501 + 0 NA Intergenic MST-int|LTR|ERVL-MaLR -63815 NR_047508 100874164 Hs.739604 NR_047508 LINC00417 - long intergenic non-protein coding RNA 417 ncRNA 0.004474 0.486034 17(AAGTCTCT,+,0.00),135(AAGCCTCT,+,0.00),492(AATCGGCT,+,0.00) 489(CAAAATCG,+,0.00) 246(AGCCATGGCTGG,-,0.00) 165 chr1 1646642 1646811 + 0 NA intron (NM_001291345, intron 5 of 19) intron (NM_001291345, intron 5 of 19) 9065 NM_024011 728642 Hs.651228 NM_024011 ENSG00000008128 CDK11A CDC2L2|CDC2L3|CDK11-p110|CDK11-p46|CDK11-p58|PITSLRE|p58GTA cyclin-dependent kinase 11A protein-coding 0.029586 0.535294 -50(CCTTAGCCTCCC,-,0.00) 5(GAATCGGCCC,-,0.00) 198 chr19 58791941 58792355 + 0 NA intron (NM_021089, intron 1 of 3) MLT1D|LTR|ERVL-MaLR 1830 NM_021089 7554 Hs.590941 NM_021089 HPRD:01919 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 0.004831 0.433735 263(AGACACTT,-,0.00) 37(CGGTTTTC,-,0.00) 139 chr3 133673925 133674164 + 0 NA intron (NM_005630, intron 3 of 13) intron (NM_005630, intron 3 of 13) -25388 NM_025041 80111 Hs.287691 NM_025041 HPRD:07981 C3orf36 - chromosome 3 open reading frame 36 protein-coding 0.020921 0.625000 -5(AAGCGGCT,+,0.00) 73(CAAACCCG,+,0.00) 87(CTCCCAGGCCCC,-,0.00) 129 chr4 175413705 175414312 + 0 NA intron (NM_001256305, intron 4 of 4) intron (NM_001256305, intron 4 of 4) 30036 NM_001256301 3248 Hs.596913 NM_000860 HPRD:03406 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 hydroxyprostaglandin dehydrogenase 15-(NAD) protein-coding 0.000000 0.310855 142(AAGTGGTT,+,0.00) 2 chr6_dbb_hap3 1950151 1950398 + 0 NA promoter-TSS (NM_133471).5 promoter-TSS (NM_133471).5 -940 NM_133471 170954 Hs.101150 NM_133471 ENSG00000146112 PPP1R18 HKMT1098|KIAA1949 protein phosphatase 1, regulatory subunit 18 protein-coding 0.032389 0.625000 -92(CGGAGGTAGCGG,+,0.00) 17 chr5 131723172 131723348 + 0 NA intron (NM_003060, intron 5 of 9) intron (NM_003060, intron 5 of 9) -17652 NR_110997 553103 Hs.570908 NR_037898 ENSG00000233006 LOC553103 - uncharacterized LOC553103 ncRNA 0.005682 0.327684 -69(AGGTGGCT,+,0.00) 186 chr2 37497193 37497710 + 0 NA intron (NM_005813, intron 11 of 17) intron (NM_005813, intron 11 of 17) 38677 NM_001083946 55471 Hs.433466 NM_018607 HPRD:15180 NDUFAF7 C2orf56|MidA NADH dehydrogenase (ubiquinone) complex I, assembly factor 7 protein-coding 0.007737 0.372587 -38(CTACTCGG,+,0.00) 110 chr6 36977294 36977744 + 0 NA intron (NM_173558, intron 2 of 15) AluSx1|SINE|Alu 4096 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 0.020000 0.498891 153(GGAGGCCGAG,+,0.00) 104(TAGCGGCT,+,0.00) 82 chr1 144182513 144182692 + 0 NA intron (NM_001278267, intron 15 of 130) intron (NM_001278267, intron 15 of 130) 35791 NM_001278267 100288142 Hs.445080 NM_001278267 ENSG00000203832 NBPF20 - neuroblastoma breakpoint family, member 20 protein-coding 0.005587 0.394444 147 chr1 32098483 32098698 + 0 NA intron (NM_012392, intron 3 of 4) intron (NM_012392, intron 3 of 4) 11628 NR_033688 553115 Hs.470417 NM_012392 HPRD:10143 PEF1 ABP32|PEF1A penta-EF-hand domain containing 1 protein-coding 0.000000 0.504630 -79(AGGGGAGGGA,-,0.00) 228 chr19 10215728 10215963 + 0 NA Intergenic Intergenic -1054 NM_020230 56342 Hs.14468 NM_020230 HPRD:08478 PPAN BXDC3|SSF|SSF-1|SSF1|SSF2 peter pan homolog (Drosophila) protein-coding 0.034043 0.656780 90(CTCGGCCCCC,-,0.00) -88(CCCACCGA,+,0.00) 100(CACCCTCAGCCC,+,0.00) 88(CCCTCGGCCCCC,-,0.00) 41(GCTGCCAGGC,+,0.00) 41(GCTGCCAGGCTG,+,0.00) 236 chr9 130452513 130452712 + 0 NA TTS (NR_037473) TTS (NR_037473) 462 NR_037473 100500872 NR_037473 miRBase:MI0016415 MIR3911 - microRNA 3911 ncRNA 0.000000 0.575000 -92(CCCTCTCACACC,+,0.00) 218 chr17 42249057 42249258 + 0 NA intron (NM_080863, intron 1 of 4) intron (NM_080863, intron 1 of 4) 1083 NM_080863 92591 Hs.534517 NM_080863 HPRD:10670 ASB16 - ankyrin repeat and SOCS box containing 16 protein-coding 0.004975 0.376238 202 chr7 45851275 45851488 + 0 NA Intergenic Intergenic -42764 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPT7P2 SEPT13|SEPT7B septin 7 pseudogene 2 pseudo 0.042254 0.658879 168 chr17 79847319 79847508 + 0 NA intron (NM_005782, intron 2 of 5) intron (NM_005782, intron 2 of 5) -1253 NM_001289414 51529 Hs.534456 NM_016476 HPRD:12452 ANAPC11 APC11|Apc11p anaphase promoting complex subunit 11 protein-coding 0.026455 0.547368 61(AGCCACTA,-,0.00) -70(CGGGGCAGGAGG,-,0.00) -74(AGGGCGGGGC,-,0.00) 41(TAGCAACG,-,0.00) 27(GCTGCAAAGC,+,0.00) 184 chrX 140927549 140927732 + 0 NA intron (NM_138702, intron 1 of 7) MER20|DNA|hAT-Charlie 1538 NM_138702 139081 Hs.356870 NM_138702 HPRD:06629 MAGEC3 CT7.2|HCA2|MAGE-C3|MAGEC4 melanoma antigen family C, 3 protein-coding 0.010929 0.391304 25(AAGCGTCT,+,0.00) 135 chr10 120904866 120905187 + 0 NA intron (NR_110305, intron 12 of 13) AluSz6|SINE|Alu 20178 NM_213649 119559 Hs.655168 NM_178867 HPRD:18046 SFXN4 BCRM1|COXPD18 sideroflexin 4 protein-coding 0.028037 0.456522 6(CGTGGCTA,+,0.00) 135(ACCGCGCC,+,0.00) -18(CCGAGTAG,-,0.00) 14 chr14 96132467 96133157 + 0 NA intron (NR_028288, intron 4 of 7) MIRb|SINE|MIR 15297 NR_028288 27004 Hs.510368 NM_012468 HPRD:05104 TCL6 TNG1|TNG2 T-cell leukemia/lymphoma 6 (non-protein coding) ncRNA 0.008696 0.523878 -96(AAGTGGTT,+,0.00),378(AGCCACTT,-,0.00) 76(GGGGCCTGGCAC,+,0.00) 112 chr5 145140428 145140672 + 0 NA intron (NM_182960, intron 7 of 7) intron (NM_182960, intron 7 of 7) 74382 NM_138492 153768 Hs.314261 NM_138492 HPRD:14479 PRELID2 - PRELI domain containing 2 protein-coding 0.004098 0.351020 69 chr8 141673175 141673912 + 0 NA intron (NM_153831, intron 31 of 31) intron (NM_153831, intron 31 of 31) -27897 NM_001164623 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 0.005427 0.422764 191 chr11 2422488 2422872 + 0 NA 5' UTR (NM_001297659, exon 1 of 3) 5' UTR (NM_001297659, exon 1 of 3) 432 NM_001297659 10078 Hs.523424 NM_005706 HPRD:10357 TSSC4 - tumor suppressing subtransferable candidate 4 protein-coding 0.044271 0.587013 13(CCCCCGCC,-,0.00) -98(GGCCGCGGCGGC,-,0.00) 172 chr11 32610081 32610481 + 0 NA intron (NM_006360, intron 3 of 10) intron (NM_006360, intron 3 of 10) 4968 NM_006360 10480 Hs.502244 NM_006360 EIF3M B5|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3, subunit M protein-coding 0.015000 0.421446 -98(AGACGCAT,-,0.00),226(AAGTGGCT,+,0.00) 145 chr20 35169872 35170354 + 0 NA intron (NM_006097, intron 1 of 3) intron (NM_006097, intron 1 of 3) 226 NM_181526 10398 Hs.504687 NM_006097 HPRD:17619 MYL9 LC20|MLC-2C|MLC2|MRLC1|MYRL2 myosin, light chain 9, regulatory protein-coding 0.064315 0.714286 196(CCGGGCAGCAGG,-,0.00) 262(TCCAGGCCCT,+,0.00) -86(CCCCCGCC,-,0.00) 170(GGGCCGACAGGG,-,0.00) 332(CGGGTACA,+,0.00) -91(CCCCGCCCCCGC,-,0.00),148(GCTGGGGCAGCG,+,0.00) -99(CCGCCACG,-,0.00) -100(GCCGCCACGCCC,+,0.00) 280(GCTGAGGAGC,+,0.00),321(GCTGGGGAGC,+,0.00) 49 chr1 15818453 15818650 + 0 NA TTS (NM_015849) TTS (NM_015849) 15955 NM_015849 51032 Hs.631871 NM_015849 HPRD:06496 CELA2B ELA2B chymotrypsin-like elastase family, member 2B protein-coding 0.010152 0.510101 178 chr11 6279322 6279491 + 0 NA Intergenic Intergenic -1498 NM_176875 887 Hs.203 NM_176875 HPRD:00323 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 0.005917 0.441176 24 chr18 21731432 21731670 + 0 NA intron (NM_153769, intron 3 of 5) intron (NM_153769, intron 3 of 5) 12103 NM_138644 26256 Hs.511983 NM_012189 HPRD:10806 CABYR CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2 calcium binding tyrosine-(Y)-phosphorylation regulated protein-coding 0.008403 0.288703 -22(TTTACCCT,-,0.00) 224 chr3 134205967 134206344 + 0 NA intron (NM_025180, intron 1 of 15) intron (NM_025180, intron 1 of 15) 1108 NM_025180 80254 Hs.443301 NM_025180 HPRD:07826 CEP63 SCKL6 centrosomal protein 63kDa protein-coding 0.007958 0.322751 187 chr5 37379700 37380006 + 0 NA intron (NM_018034, intron 2 of 17) intron (NM_018034, intron 2 of 17) 441 NM_018034 55100 Hs.213690 NM_018034 WDR70 - WD repeat domain 70 protein-coding 0.029412 0.377850 166(TCGGTAGG,-,0.00) 140 chr2 132123152 132123547 + 0 NA Intergenic AluSx3|SINE|Alu -1618 NM_001077637 150786 Hs.645670 NM_001077637 WTH3DI - RAB6C-like protein-coding 0.015190 0.515152 282(CCGGGAAGTCGA,-,0.00) 165(CAAAACCC,+,0.00) 223 chr15 25198344 25198849 + 0 NA intron (NM_022808, intron 3 of 11) AluSc5|SINE|Alu -1474 NM_022804 8926 Hs.564847 NM_005678 HPRD:18083 SNURF - SNRPN upstream reading frame protein-coding 0.019802 0.440711 271(CTCGGCCTCC,-,0.00) 106(CCTCCGCCTCCC,-,0.00) 148(CCGAGTAG,-,0.00) 124 chr17 80197132 80197729 + 0 NA TTS (NM_001042423) TTS (NM_001042423) 2886 NR_106845 102465472 NR_106845 MIR6787 hsa-mir-6787 microRNA 6787 ncRNA 0.031826 0.608696 236(AGCGGCAT,-,0.00),300(AGGCCGCT,+,0.00),379(AGCCACTT,-,0.00) 258(GGGCAGGCGCTG,-,0.00) 144(TGGTTTTG,-,0.00) 406(GAAACAGGACCC,+,0.00) 280(GCTGCGGGGC,+,0.00) 441(TCTGCCTGGCTG,+,0.00) 104 chr18 43666131 43666492 + 0 NA intron (NM_001001935, intron 9 of 11) intron (NM_001001935, intron 9 of 11) 12008 NM_001257335 498 Hs.298280 NM_004046 HPRD:01258 ATP5A1 ATP5A|ATP5AL2|ATPM|HEL-S-123m|MC5DN4|MOM2|OMR|ORM|hATP1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle protein-coding 0.027701 0.430939 152(CGACACGA,-,0.00) -79(CAGAACCG,+,0.00) 151(CCGACACG,-,0.00) 131 chr3 48417818 48418112 + 0 NA intron (NM_001159927, intron 5 of 9) intron (NM_001159927, intron 5 of 9) 4256 NM_001159929 285231 Hs.288793 NM_207102 HPRD:16428 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 0.003401 0.366102 73(CAAAACTG,+,0.00) 181 chr5 56115794 56115973 + 0 NA intron (NM_005921, intron 1 of 19) intron (NM_005921, intron 1 of 19) 4983 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase protein-coding 0.005587 0.322222 234 chrX 41374737 41375178 + 0 NA 3' UTR (NM_003688, exon 27 of 27) 3' UTR (NM_003688, exon 27 of 27) 68244 NM_022567 60506 Hs.302019 NM_022567 HPRD:02232 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 0.029478 0.504525 17(AGCCGCCT,-,0.00),215(AAGCCTCT,+,0.00) -82(TGGCGACG,-,0.00) -25(TGGGCGGC,-,0.00) 121 chr3 49454417 49454618 + 0 NA TTS (NM_022171) TTS (NM_022171) 4878 NM_022171 6988 Hs.517962 NM_022171 HPRD:15977 TCTA - T-cell leukemia translocation altered protein-coding 0.009950 0.485149 79 chr19 11836365 11836634 + 0 NA intron (NM_001297610, intron 1 of 2) intron (NM_001297610, intron 1 of 2) 13325 NM_017507 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 0.011152 0.433333 212 chr15 93833065 93833458 + 0 NA Intergenic Intergenic -200818 NM_020211 56963 Hs.271277 NM_020211 HPRD:09560 RGMA RGM repulsive guidance molecule family member a protein-coding 0.015267 0.469543 41(CAAACCCG,+,0.00),157(TGGTTTTG,-,0.00) 154 chr15 102306057 102306742 + 0 NA Intergenic Intergenic -39524 NM_001005326 390648 Hs.553399 NM_001005326 HPRD:11415 OR4F6 OR15-15|OR4F12 olfactory receptor, family 4, subfamily F, member 6 protein-coding 0.021898 0.603499 480(GAGCCCCAGCCC,+,0.00) 458(CGGCAAGA,-,0.00) 23 chr11 114438414 114439434 + 0 NA Intergenic Intergenic -8307 NM_152315 120400 Hs.721328 NM_152315 HPRD:13315 NXPE1 FAM55A neurexophilin and PC-esterase domain family, member 1 protein-coding 0.002941 0.363369 866(AAGCCTCT,+,0.00) 96 chr2 69175859 69176140 + 0 NA intron (NM_182536, intron 3 of 5) intron (NM_182536, intron 3 of 5) 4103 NM_182536 200504 Hs.16757 NM_182536 HPRD:17034 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 0.000000 0.326241 68(CAGTTTTG,-,0.00) 126 chr9 35678081 35678349 + 0 NA intron (NM_001216, intron 6 of 10) AluY|SINE|Alu 4300 NM_001216 768 Hs.63287 NM_001216 HPRD:04417 CA9 CAIX|MN carbonic anhydrase IX protein-coding 0.037313 0.550186 113(TCGTGCCA,+,0.00) -81(GGGAGGCCAAGG,+,0.00) 47(CTACTCGG,+,0.00) 238 chr1 161689678 161690056 + 0 NA Intergenic L1ME5|LINE|L1 -1467 NM_001002901 127943 Hs.517422 NM_001002901 HPRD:08093 FCRLB FCRL2|FCRLM2|FCRLY|FREB-2|FcRY Fc receptor-like B protein-coding 0.007937 0.369393 -21(CAAAACTG,+,0.00) 159 chr11 121968766 121969015 + 0 NA intron (NR_024430, intron 3 of 3) intron (NR_024430, intron 3 of 3) 1662 NR_029671 406911 NR_029671 miRBase:MI0000446 MIR125B1 MIRN125B1 microRNA 125b-1 ncRNA 0.004016 0.308000 -54(TTTACCTG,-,0.00) 160 chr6_ssto_hap7 1353184 1353362 + 0 NA intron (NR_026751, intron 3 of 5).2 intron (NR_026751, intron 3 of 5).2 6131 NR_026751 80862 Hs.653168 NR_026751 ENSG00000204623 ZNRD1-AS1 C6orf12|HTEX4|NCRNA00171|TCTEX4|ZNRD1-AS|ZNRD1AS ZNRD1 antisense RNA 1 ncRNA 0.005618 0.424581 176 chrX 38011408 38012187 + 0 NA intron (NM_001170752, intron 8 of 8) MER5A|DNA|hAT-Charlie 68380 NM_001170751 8406 Hs.15154 NM_006307 HPRD:02175 SRPX DRS|ETX1|HEL-S-83p|SRPX1 sushi-repeat containing protein, X-linked protein-coding 0.007702 0.373077 -87(AGGTGTCT,+,0.00) 220(CGGGTACG,+,0.00) 60(TTTACCTG,-,0.00) 47 chr4 153551273 153551570 + 0 NA intron (NM_152680, intron 6 of 6) AluJr|SINE|Alu 49896 NM_152680 201799 Hs.518900 NM_152680 TMEM154 - transmembrane protein 154 protein-coding 0.010101 0.439597 8 chr8 12042099 12042803 + 0 NA intron (NM_001083537, intron 6 of 6) intron (NM_001083537, intron 6 of 6) -7675 NR_046354 729689 Hs.741074 NR_046354 FAM90A2P - family with sequence similarity 90, member A2 pseudogene pseudo 0.029830 0.622695 255(TCACCCTGCTCG,+,0.00) 472(CCTCCCTCCCTG,+,0.00) 64(AGGCACGA,-,0.00) -31(CGGGTACA,+,0.00) 44(GGGGCTTGGGTG,+,0.00),79(GTGGCCGGGCTG,+,0.00) 209 chr6 27553621 27553790 + 0 NA Intergenic LTR33A_|LTR|ERVL -108109 NR_038293 100507173 Hs.635987 NR_038292 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 0.017751 0.447059 45(CTTACCCG,-,0.00) 98 chr21 35822222 35822591 + 0 NA intron (NM_001270404, intron 1 of 1) L1ME5|LINE|L1 5701 NM_001127670 3753 Hs.121495 NM_000219 HPRD:01442 KCNE1 ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK potassium voltage-gated channel, Isk-related family, member 1 protein-coding 0.008130 0.456757 216 chr1 198605812 198606356 + 0 NA Intergenic Intergenic -2014 NM_001267798 5788 Hs.654514 NM_002838 HPRD:01050 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase, receptor type, C protein-coding 0.003676 0.379817 -91(CTACCCGGAGTC,+,0.00) 37 chr4 159447538 159447801 + 0 NA intron (NR_045583, intron 1 of 16) intron (NR_045583, intron 1 of 16) 4803 NR_045583 59350 Hs.591686 NM_021634 HPRD:05975 RXFP1 LGR7|RXFPR1 relaxin/insulin-like family peptide receptor 1 protein-coding 0.000000 0.333333 44(AGGTTTTG,-,0.00) 117 chr12 76438422 76438994 + 0 NA TTS (NM_004537) TTS (NM_004537) -13152 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 0.000000 0.298429 278(AGAGACTT,-,0.00) 43 chr1 84634237 84634510 + 0 NA intron (NM_001242861, intron 1 of 10) intron (NM_001242861, intron 1 of 10) 4050 NM_001300915 5567 Hs.487325 NM_002731 HPRD:01482 PRKACB PKA C-beta|PKACB protein kinase, cAMP-dependent, catalytic, beta protein-coding 0.000000 0.339416 195 chr12 133361302 133361889 + 0 NA intron (NM_005895, intron 15 of 23) MIR|SINE|MIR -23121 NM_015114 23141 Hs.654628 NM_015114 ENSG00000176915 ANKLE2 KIAA0692|LEMD7|Lem4 ankyrin repeat and LEM domain containing 2 protein-coding 0.027257 0.544218 326(GGCTCGCAGC,-,0.00) 5 chr1 3809403 3809714 + 0 NA exon (NM_207356, exon 2 of 4) exon (NM_207356, exon 2 of 4) 7299 NM_207356 339448 Hs.103939 NM_207356 HPRD:17353 C1orf174 - chromosome 1 open reading frame 174 protein-coding 0.041801 0.548077 170 chr1 23346533 23346756 + 0 NA intron (NM_015013, intron 1 of 18) CpG 703 NM_001009999 23028 Hs.591518 NM_015013 HPRD:09800 KDM1A AOF2|BHC110|KDM1|LSD1 lysine (K)-specific demethylase 1A protein-coding 0.053812 0.553571 36(GGCATCGA,-,0.00) 18(CCGAGCGA,+,0.00) 20(GAGCGACG,-,0.00) -12(CGGTGTTG,-,0.00) -72(GCTGCGCA,+,0.00) 33 chr5 175770986 175771155 + 0 NA intron (NM_198567, intron 8 of 8) AluSx|SINE|Alu 17740 NR_109799 57179 Hs.743257 NM_020444 HPRD:13839 KIAA1191 p60MONOX KIAA1191 protein-coding 0.005917 0.476471 21 chr1 84972645 84972855 + 0 NA promoter-TSS (NM_005274) promoter-TSS (NM_005274) -488 NM_005274 2787 Hs.645427 NM_005274 HPRD:11865 GNG5 - guanine nucleotide binding protein (G protein), gamma 5 protein-coding 0.014286 0.369668 63 chr7 25170843 25171175 + 0 NA Intergenic MER1A|DNA|hAT-Charlie -6029 NM_018947 54205 Hs.437060 NM_018947 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 0.006024 0.402402 103(CAAAACTG,+,0.00) 7 chr19 47177015 47177206 + 0 NA TTS (NM_001079880) TTS (NM_001079880) 12375 NR_040041 100506068 Hs.434327 NR_040041 ENSG00000245598 DACT3-AS1 - DACT3 antisense RNA 1 ncRNA 0.015707 0.520833 64(CTCGGCCTCC,-,0.00) 227 chr6_ssto_hap7 2660316 2660505 + 0 NA Intergenic L1MEf|LINE|L1 -1662 NM_005514 3106 Hs.77961 NM_005514 HPRD:00828 HLA-B AS|HLAB|SPDA1 major histocompatibility complex, class I, B protein-coding 0.000000 0.305263 26 chr6_dbb_hap3 1747175 1747344 + 0 NA Intergenic AluJr|SINE|Alu -3564 NM_005516 3133 Hs.650174 NM_005516 HPRD:00877 HLA-E EA1.2|EA2.1|HLA-6.2|MHC|QA1 major histocompatibility complex, class I, E protein-coding 0.017751 0.535294 59(AGACGCTT,-,0.00) -99(CTGGGAAGGCTG,-,0.00) 44(GTCAGACG,-,0.00) 80 chr10 88417017 88417464 + 0 NA intron (NM_001030015, intron 3 of 10) intron (NM_001030015, intron 3 of 10) 2926 NM_033282 94233 Hs.283922 NM_033282 HPRD:05977 OPN4 MOP opsin 4 protein-coding 0.024609 0.575893 -101(AGCCACTT,-,0.00) 170(CCGCGGAGGAGG,-,0.00) 313(TCGTGCAG,+,0.00) 37(GCCTGGCCCGGC,-,0.00) 193 chr3 175084192 175084502 + 0 NA intron (NM_207015, intron 5 of 13) L1PA3|LINE|L1 -2982 NR_039952 100616395 NR_039952 MIR4789 - microRNA 4789 ncRNA 0.009677 0.414791 160(AAGTGTCT,+,0.00) 74(TGGTTTTG,-,0.00) 119 chr10 47751160 47751331 + 0 NA intron (NM_001098845, intron 2 of 11) intron (NM_001098845, intron 2 of 11) 4395 NM_001098845 728113 Hs.705389 NM_001630 ENSG00000150165 ANXA8L1 ANXA8|ANXA8L2|VAC-beta|bA145E20.2 annexin A8-like 1 protein-coding 0.017544 0.610465 19(CGCTCACAGCCC,+,0.00) 180 chr7 99754310 99754852 + 0 NA promoter-TSS (NR_039802) promoter-TSS (NR_039802) -289 NR_039802 100616439 NR_039802 MIR4658 - microRNA 4658 ncRNA 0.012915 0.583794 156(CCGGGTAGGCGG,-,0.00) 358(GGCGTTGA,-,0.00) -80(TCCAGGCCCT,+,0.00) 86(CCCTCTCAGCTG,+,0.00) 97(GAAACAGGAAGT,+,0.00) 99 chr6 170154115 170154312 + 0 NA intron (NM_001278531, intron 2 of 17) intron (NM_001278531, intron 2 of 17) 2495 NM_001278532 55780 Hs.47546 NM_018341 HPRD:18697 ERMARD C6orf70|PVNH6|dJ266L20.3 ER membrane-associated RNA degradation protein-coding 0.000000 0.398990 244 chr13 48968457 48968762 + 0 NA intron (NM_000321, intron 17 of 26) L1PA7|LINE|L1 19044 NM_001162498 10161 Hs.123464 NM_005767 HPRD:16465 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 0.022951 0.552288 179 chr6 33844757 33844940 + 0 NA Intergenic Intergenic 19836 NR_038989 100507584 Hs.547104 NR_038989 ENSG00000249346 LINC01016 - long intergenic non-protein coding RNA 1016 ncRNA 0.005464 0.576087 -22(GGCCAGGGAGGC,-,0.00) 162 chrY 27604986 27605956 + 0 NA non-coding (NR_001555, exon 6 of 9).2 non-coding (NR_001555, exon 6 of 9).2 4013 NR_002195 401634 Hs.531603 NR_002195 ENSG00000172297 GOLGA2P3Y GOLGA2LY2|GOLGA2P3 golgin A2 pseudogene 3, Y-linked pseudo 0.013402 0.571576 804(CGGCCCCAGCCC,+,0.00) 426(AGAGCCGGGA,-,0.00),640(TCCCTGCCCT,+,0.00) 96(GCGGGGCCATCG,+,0.00),803(GCGGCCCCAGCC,+,0.00) 391(ACCTCGGCCC,-,0.00) 72 chr11 57533271 57533828 + 0 NA intron (NM_001085467, intron 1 of 16) AluJb|SINE|Alu 4315 NM_001085467 1500 Hs.166011 NM_001331 HPRD:03026 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin (cadherin-associated protein), delta 1 protein-coding 0.016158 0.410394 114(TGTACCCG,-,0.00) 246 chr17 64211175 64212440 + 0 NA intron (NM_000042, intron 6 of 7) intron (NM_000042, intron 6 of 7) 13749 NM_000042 350 Hs.445358 NM_000042 HPRD:00728 APOH B2G1|B2GP1|BG apolipoprotein H (beta-2-glycoprotein I) protein-coding 0.012648 0.464455 -70(AGCCACCT,-,0.00),551(AGACACCT,-,0.00) 934(GGGAGGTGAAGG,+,0.00) 130(CCCTGGCTCGGC,-,0.00) 1089(CGAGGCGG,+,0.00) 898(GGGCATGGTGGC,-,0.00) 135(GCTCGGCAGC,-,0.00) 240 chr2 113509431 113509728 + 0 NA intron (NM_152515, intron 5 of 8) MIR|SINE|MIR 12675 NM_152515 150468 Hs.434250 NM_152515 CKAP2L - cytoskeleton associated protein 2-like protein-coding 0.000000 0.342282 52(CAGTTTTG,-,0.00) 74 chr6 131895836 131896046 + 0 NA intron (NM_015979, intron 30 of 30) MIR|SINE|MIR 1597 NM_001244438 383 Hs.440934 NM_000045 HPRD:01947 ARG1 - arginase 1 protein-coding 0.009524 0.412322 182 chr1 154558107 154558480 + 0 NA exon (NM_001025107, exon 13 of 15) exon (NM_001025107, exon 13 of 15) 18036 NM_000748 1141 Hs.2306 NM_000748 HPRD:00335 CHRNB2 EFNL3|nAChRB2 cholinergic receptor, nicotinic, beta 2 (neuronal) protein-coding 0.008043 0.451872 61 chr6 73332554 73332862 + 0 NA intron (NM_001160133, intron 1 of 14) CpG 1137 NM_001160134 56479 Hs.445324 NM_019842 HPRD:16241 KCNQ5 Kv7.5 potassium voltage-gated channel, KQT-like subfamily, member 5 protein-coding 0.068182 0.608414 109(GGCATCGA,-,0.00) -58(TGCGCGGA,-,0.00) -93(CCGGGGCGAGAG,+,0.00) 230 chr12 81654357 81655091 + 0 NA intron (NM_001220474, intron 30 of 30) intron (NM_001220474, intron 30 of 30) -18244 NR_120491 102724663 Hs.667264 NR_120491 LOC102724663 - uncharacterized LOC102724663 ncRNA 0.006812 0.310204 180(AAGTGGTT,+,0.00) 382(AGGTTTTG,-,0.00) 108 chr16 2578970 2579388 + 0 NA TTS (NM_001048212) TTS (NM_001048212) 2230 NM_001048212 752014 Hs.433499 NM_001048212 ENSG00000205923 CEMP1 CP-23|CP23 cementum protein 1 protein-coding 0.023923 0.644391 -61(GGCCCTGGAGGC,-,0.00) 115 chr6_cox_hap2 3233725 3233937 + 0 NA intron (NM_172165, intron 12 of 24).4 AluSc|SINE|Alu -6528 NM_001039651 401251 Hs.371225 NM_001039651 ENSG00000228727 SAPCD1 C6orf26|NG23 suppressor APC domain containing 1 protein-coding 0.009434 0.417840 92 chr21 45792829 45793387 + 0 NA intron (NR_038257, intron 5 of 31) AluSx1|SINE|Alu 19624 NM_003307 7226 Hs.369759 NM_003307 HPRD:04777 TRPM2 EREG1|KNP3|LTRPC2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel, subfamily M, member 2 protein-coding 0.014337 0.502683 388(CTCGGCCCCC,-,0.00) -99(CCCTTTCAGTCC,+,0.00) 384(CCGCCTCG,-,0.00) 103 chr11 75424363 75424645 + 0 NA Intergenic Intergenic -4430 NM_025098 80168 Hs.288568 NM_025098 MOGAT2 DGAT2L5|MGAT2 monoacylglycerol O-acyltransferase 2 protein-coding 0.003546 0.473498 -20(CTTACCCG,-,0.00) 201 chr20 37052068 37052261 + 0 NA intron (NR_027241, intron 4 of 6) L1MA9|LINE|L1 1814 NR_002910 26776 Hs.400876 NR_002910 ENSG00000235408 SNORA71B RNU71B|U71b small nucleolar RNA, H/ACA box 71B snoRNA 0.000000 0.324742 232 chr12 110365783 110365997 + 0 NA Intergenic AluSx3|SINE|Alu 27567 NM_032300 84260 Hs.410924 NM_032300 HPRD:14403 TCHP TpMs trichoplein, keratin filament binding protein-coding 0.028037 0.520930 -42(CGTCTCTA,+,0.00) 22(CTACTCGG,+,0.00) -8(GGGCATGGTGGC,-,0.00) 10 chr10 47192240 47192555 + 0 NA exon (NM_001190810, exon 8 of 8) exon (NM_001190810, exon 8 of 8) -10709 NM_001137549 100133093 Hs.723078 NM_001137549 ENSG00000197910 FAM25G FAM25A|FAM25B|FAM25C|bA301J7.4 family with sequence similarity 25, member G protein-coding 0.022222 0.579114 115(GGGTTTTG,-,0.00) 113 chr17 3408927 3409199 + 0 NA Intergenic AluSx|SINE|Alu 29767 NM_000049 443 Hs.171142 NM_000049 ASPA ACY2|ASP aspartoacylase protein-coding 0.025735 0.490842 131(TCGTGCCT,+,0.00) 61(CACCCAGGCTGC,-,0.00) 152 chr10 97808074 97808419 + 0 NA intron (NM_019084, intron 2 of 5) L1MB3|LINE|L1 5087 NM_019084 54619 Hs.596479 NM_019084 HPRD:07710 CCNJ bA690P14.1 cyclin J protein-coding 0.005797 0.393064 189 chr1_gl000192_random 432823 433045 + 0 NA intron (NR_120328, intron 4 of 4) intron (NR_120328, intron 4 of 4) -25424 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 0.009009 0.434978 225 chr11 1892726 1893031 + 0 NA intron (NM_001013254, intron 1 of 10) intron (NM_001013254, intron 1 of 10) 724 NM_001013255 4046 Hs.56729 NM_002339 HPRD:01083 LSP1 WP34|pp52 lymphocyte-specific protein 1 protein-coding 0.029508 0.647059 -9(TGCGGCTCTGCG,-,0.00) 207 chr10 124861345 124861524 + 0 NA Intergenic Intergenic -34133 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 0.005587 0.427778 47(GCCGCCCA,+,0.00) 142 chr19 55849293 55849713 + 0 NA Intergenic AluSq2|SINE|Alu -1718 NM_032701 84787 Hs.590982 NM_032701 HPRD:15454 SUV420H2 KMT5C suppressor of variegation 4-20 homolog 2 (Drosophila) protein-coding 0.023810 0.527316 241(GGCGGCGGAG,+,0.00) 239(TGGGCGGC,-,0.00) 91 chr22 19927744 19927935 + 0 NA intron (NM_001282512, intron 1 of 11) HERVK11-int|LTR|ERVK -1424 NM_000754 1312 Hs.370408 NM_000754 HPRD:00284 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 0.015707 0.385417 -19(GGGCACGA,-,0.00) 167 chr6 90145469 90145840 + 0 NA intron (NM_001242813, intron 1 of 14) intron (NM_001242813, intron 1 of 14) 2757 NM_001242809 22881 Hs.702213 NM_014942 HPRD:09798 ANKRD6 - ankyrin repeat domain 6 protein-coding 0.005391 0.346774 95(CTGTTTTG,-,0.00) 48 chr1 84544567 84545788 + 0 NA intron (NM_207578, intron 1 of 8) intron (NM_207578, intron 1 of 8) 1519 NM_207578 5567 Hs.487325 NM_002731 HPRD:01482 PRKACB PKA C-beta|PKACB protein kinase, cAMP-dependent, catalytic, beta protein-coding 0.011466 0.368249 929(CTCGGCCTCC,-,0.00) 83(CGGAAGGTGCGG,+,0.00) 558(AGGTTTTG,-,0.00) 1063(TTTACCTG,-,0.00) 78(GAGAGCGGAAGG,+,0.00) 107 chr10 38469329 38469595 + 0 NA intron (NR_024524, intron 2 of 6) intron (NR_024524, intron 2 of 6) 4863 NR_024524 100129055 Hs.148265 NR_024524 LOC100129055 - cyclin Y-like 1 pseudogene pseudo 0.003759 0.374532 53(TTTACCCA,-,0.00) 87 chr1 43004429 43004777 + 0 NA intron (NM_001080850, intron 2 of 15) intron (NM_001080850, intron 2 of 15) 4043 NM_001080850 728621 Hs.729640 NM_001080850 HPRD:08632 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 0.002874 0.300860 168(TCGGTCTG,-,0.00) 20(TTTACCTG,-,0.00) 174 chr12 49395678 49396805 + 0 NA 3' UTR (NM_001206710, exon 12 of 12) 3' UTR (NM_001206710, exon 12 of 12) -3153 NM_015086 23109 Hs.591044 NM_015086 HPRD:10294 DDN - dendrin protein-coding 0.009760 0.468972 463(TTGGCCTCCTCC,+,0.00) -58(CCCGGGAGACGG,-,0.00) -55(GGGAGACGGAGG,+,0.00) 77 chr10 24916179 24916646 + 0 NA intron (NM_020824, intron 7 of 25) intron (NM_020824, intron 7 of 25) 96185 NM_020824 57584 Hs.524195 NM_020824 HPRD:06445 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 0.000000 0.260684 214 chr6_mann_hap4 305482 305793 + 0 NA Intergenic L1MA8|LINE|L1 -1562 NR_125387 100129636 Hs.553526 NM_001195202 LOC100129636 - uncharacterized LOC100129636 ncRNA 0.000000 0.294872 133 chr18 11889614 11889823 + 0 NA intron (NR_040243, intron 4 of 11) AluSc8|SINE|Alu 19078 NM_001242904 65258 Hs.712666 NM_023075 HPRD:14734 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 0.033493 0.523810 -5(GCCACCATGCCC,+,0.00) 149 chr9 138450879 138451111 + 0 NA Intergenic Intergenic -2609 NM_002571 5047 Hs.532325 NM_002571 HPRD:01411 PAEP GD|GdA|GdF|GdS|PAEG|PEP|PP14 progestagen-associated endometrial protein protein-coding 0.021552 0.493562 6(ATTTCCTGTTTC,-,0.00) 123 chr1 102272439 102272611 + 0 NA intron (NM_001288823, intron 5 of 6) intron (NM_001288823, intron 5 of 6) 40111 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 0.000000 0.271676 -17(CAAAACCA,+,0.00) -11(CAAACAGAAAGC,+,0.00) 221 chr12 9984099 9984285 + 0 NA intron (NR_120305, intron 1 of 3) intron (NR_120305, intron 1 of 3) 4115 NR_120305 51348 Hs.183125 NM_016523 HPRD:05432 KLRF1 CLEC5C|NKp80 killer cell lectin-like receptor subfamily F, member 1 protein-coding 0.005376 0.310160 50 chr9 115177850 115178021 + 0 NA intron (NM_032303, intron 4 of 10) intron (NM_032303, intron 4 of 10) 35746 NM_032303 84263 Hs.59486 NM_032303 HPRD:13679 HSDL2 C9orf99|SDR13C1 hydroxysteroid dehydrogenase like 2 protein-coding 0.005848 0.377907 39 chr6 32792417 32792984 + 0 NA TTS (NM_000544).2 TTS (NM_000544).2 -7875 NM_002120 3112 Hs.1802 NM_002120 HPRD:08368 HLA-DOB DOB major histocompatibility complex, class II, DO beta protein-coding 0.001764 0.283451 210 chr16 67285056 67285484 + 0 NA intron (NM_004594, intron 1 of 15) MIR|SINE|MIR 2415 NM_004594 6553 Hs.439650 NM_004594 HPRD:02723 SLC9A5 NHE5 solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5 protein-coding 0.009346 0.431235 308(GCCACCATGCCC,+,0.00) 64 chr9 102114218 102114428 + 0 NA Intergenic Intergenic 23216 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 0.038095 0.568720 -9(AGCCACTA,-,0.00) 75(TGGGCGGT,-,0.00) 97 chr1 222733386 222733666 + 0 NA intron (NM_139352, intron 9 of 10) L1MCc|LINE|L1 -12082 NM_024746 79802 Hs.665660 NM_024746 HPRD:08587 HHIPL2 KIAA1822L HHIP-like 2 protein-coding 0.003571 0.462633 134(ATGTGGCT,+,0.00) 12 chr15 62540409 62541038 + 0 NA Intergenic Intergenic 56210 NR_107034 102465869 NR_107034 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 0.009539 0.519048 272(GGGCTGCTTT,+,0.00) 41 chr10 95444369 95444799 + 0 NA intron (NM_145246, intron 9 of 13) intron (NM_145246, intron 9 of 13) 17745 NM_145246 118924 Hs.586650 NM_145246 HPRD:12319 FRA10AC1 C10orf4|F26C11.1-like|FRA10A fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 protein-coding 0.004651 0.366589 52 chr16 19874814 19875229 + 0 NA intron (NM_016235, intron 2 of 3) AluSz|SINE|Alu 21130 NM_016235 51704 Hs.148685 NM_016235 HPRD:16177 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor, class C, group 5, member B protein-coding 0.019277 0.487981 156(CTCGGCCTCC,-,0.00) 58(GCCACCATGCCC,+,0.00) 173 chr11 65118458 65118757 + 0 NA intron (NM_006268, intron 10 of 10) intron (NM_006268, intron 10 of 10) -3675 NM_145719 220359 Hs.632121 NM_145719 HPRD:18187 TIGD3 - tigger transposable element derived 3 protein-coding 0.006689 0.326667 -60(ATGTGGCT,+,0.00) 56 chr3 171756250 171757060 + 0 NA promoter-TSS (NM_022763) promoter-TSS (NM_022763) -763 NM_022763 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 0.008642 0.397041 398(GGGAGGCCAAGG,+,0.00) 402(GGCCAAGGCGGG,-,0.00) 229 chr7 100608830 100609170 + 0 NA intron (NM_005960, intron 8 of 12) CpG -3904 NM_001164462 10071 Hs.489355 NM_001164462 ENSG00000205277 MUC12 MUC-11|MUC-12|MUC11 mucin 12, cell surface associated protein-coding 0.067647 0.656891 119(GCCCTGCCCT,+,0.00) -65(TAGAGACG,-,0.00) -9(AGCCCCGCCC,-,0.00),206(GACCCCGCCC,-,0.00) -47(CGTGTCGG,+,0.00) 45 chr6 158405116 158405323 + 0 NA intron (NM_003898, intron 1 of 26) intron (NM_003898, intron 1 of 26) 2331 NM_003898 8871 Hs.434494 NM_003898 HPRD:10259 SYNJ2 INPP5H synaptojanin 2 protein-coding 0.009662 0.365385 -24(CTGTTTTG,-,0.00) -102(CCTTGGTCTCCC,-,0.00) 66 chr19 21474672 21475281 + 0 NA 3' UTR (NM_021269, exon 4 of 4) 3' UTR (NM_021269, exon 4 of 4) 37236 NM_021269 7562 Hs.466296 NM_021269 HPRD:18322 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 0.016420 0.401639 350(GCCCGGCCCT,+,0.00) 205(ACGTGCCG,+,0.00) 210(CCGCCACG,-,0.00) 209(GCCGCCACGCCC,+,0.00),342(GCCACCATGCCC,+,0.00) 19 chr4 159046547 159046831 + 0 NA 3' UTR (NM_001128424, exon 5 of 5) 3' UTR (NM_001128424, exon 5 of 5) 47029 NM_016613 51313 Hs.567498 NM_016613 HPRD:13194 FAM198B AD036|C4orf18 family with sequence similarity 198, member B protein-coding 0.003521 0.368421 54 chr1 207849769 207850001 + 0 NA intron (NM_175710, intron 1 of 11) MER1B|DNA|hAT-Charlie 31427 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement component (3b/4b) receptor 1-like protein-coding 0.012931 0.416309 14(CAAAACCA,+,0.00) 237 chr3 62383014 62383279 + 0 NA TTS (NM_003716) TTS (NM_003716) -23956 NM_018008 55079 Hs.241523 NM_018008 HPRD:07596 FEZF2 FEZ|FEZL|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 0.003774 0.357143 70 chr3 180334998 180335167 + 0 NA intron (NM_181426, intron 16 of 19) Tigger3b|DNA|TcMar-Tigger 15164 NM_001288582 151613 Hs.43213 NM_133462 HPRD:15579 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 0.000000 0.288235 188 chr1 92412446 92412887 + 0 NA Intergenic AluSz|SINE|Alu -2262 NM_207189 676 Hs.482520 NM_001726 HPRD:03684 BRDT BRD6|CT9 bromodomain, testis-specific protein-coding 0.009070 0.443439 68 chr7 154861941 154862407 + 0 NA 5' UTR (NM_024012, exon 1 of 2) 5' UTR (NM_024012, exon 1 of 2) 140 NM_024012 3361 Hs.65791 NM_024012 HTR5A 5-HT5A 5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled protein-coding 0.053648 0.646681 -23(TCGGTGGG,-,0.00) 28(GGCGGGGG,+,0.00) 213(CAGCTTCTCCCC,-,0.00) 76(CAAAACTG,+,0.00) 207(GCCGCCCA,+,0.00),246(TGGGCGGC,-,0.00) 307(GGCCCTGGCTGC,-,0.00) 306(GGGCCCTGGCTG,+,0.00) 166 chr3 39370125 39370404 + 0 NA promoter-TSS (NM_005201) promoter-TSS (NM_005201) -933 NM_005201 1237 Hs.113222 NM_005201 HPRD:03497 CCR8 CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1 chemokine (C-C motif) receptor 8 protein-coding 0.007168 0.482143 89(CCAAACCG,+,0.00) 1 chr19 44826781 44826973 + 0 NA Intergenic L1MA4|LINE|L1 -17699 NM_004234 9310 Hs.613424 NM_004234 HPRD:05299 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 0.005208 0.393782 -59(TTTACCTG,-,0.00) 136 chr22 32589037 32589483 + 0 NA exon (NM_006605, exon 1 of 2) exon (NM_006605, exon 1 of 2) 206 NM_006605 10739 Hs.157427 NM_006605 HPRD:09338 RFPL2 RNF79 ret finger protein-like 2 protein-coding 0.015695 0.503356 28(GCAGCCATGTCC,+,0.00) 88 chr22 51060458 51060627 + 0 NA TTS (NM_001085427) TTS (NM_001085427) 6059 NM_001085425 410 Hs.88251 NM_000487 ARSA MLD arylsulfatase A protein-coding 0.035503 0.441176 116 chr16 30773706 30774441 + 0 NA promoter-TSS (NM_001195620) promoter-TSS (NM_001195620) 463 NM_001286572 9810 Hs.65238 NM_014771 HPRD:07411 RNF40 BRE1B|RBP95|STARING ring finger protein 40, E3 ubiquitin protein ligase protein-coding 0.047619 0.559783 461(AGACACTT,-,0.00) 14(TTGACGCC,+,0.00),343(ACGACGCC,+,0.00) 604(CGTCGGCC,+,0.00) 81(GCGCCGCCGGCG,+,0.00) 294(GGTCCGCGTT,+,0.00) 47(GCCGCCGCGGCC,+,0.00) 144 chr21 34139473 34139733 + 0 NA intron (NR_027873, intron 2 of 17) intron (NR_027873, intron 2 of 17) 4566 NR_027873 94104 Hs.644004 NM_013329 HPRD:10761 PAXBP1 BM020|C21orf66|FSAP105|GCFC|GCFC1 PAX3 and PAX7 binding protein 1 protein-coding 0.007692 0.375479 -54(CAATACCG,+,0.00) 141 chr17 2221195 2221398 + 0 NA intron (NM_021947, intron 3 of 7) intron (NM_021947, intron 3 of 7) 11208 NR_003073 692208 NR_003073 SNORD91B HBII-296b small nucleolar RNA, C/D box 91B snoRNA 0.004926 0.441176 -81(GGAAGCCGAAAG,+,0.00) 30 chr19 36359770 36359952 + 0 NA intron (NM_001024807, intron 1 of 16) intron (NM_001024807, intron 1 of 16) 460 NM_005166 333 Hs.74565 NM_005166 HPRD:00102 APLP1 APLP amyloid beta (A4) precursor-like protein 1 protein-coding 0.032967 0.633880 100 chr14 24042625 24042925 + 0 NA intron (NM_001146028, intron 3 of 5) intron (NM_001146028, intron 3 of 5) 5234 NM_001146028 84502 Hs.597841 NM_032452 HPRD:17170 JPH4 JP4|JPHL1 junctophilin 4 protein-coding 0.010000 0.551495 222 chr1 25172089 25172841 + 0 NA Intergenic L1MEg|LINE|L1 73442 NR_106789 102465437 NR_106789 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 0.002660 0.334661 518(CAAAACCC,+,0.00) 109(CTGGTAAA,+,0.00) 59(GGGAGGCCAAGG,+,0.00) 25 chr16 29090093 29090691 + 0 NA intron (NR_003369, intron 3 of 16) AluSq2|SINE|Alu 4229 NR_003369 653390 Hs.720348 NR_003369 ENSG00000103472 RRN3P2 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 pseudo 0.008361 0.459098 409(CTCGGCCTCC,-,0.00) 405(CCGCCTCG,-,0.00) 128 chr3 49899670 49899858 + 0 NA exon (NM_024046, exon 2 of 11) exon (NM_024046, exon 2 of 11) -5772 NM_005879 10293 Hs.517972 NM_005879 HPRD:05811 TRAIP RNF206|TRIP TRAF interacting protein protein-coding 0.031915 0.582011 28 chr10 13208230 13208625 + 0 NA intron (NM_182751, intron 2 of 19) AluSp|SINE|Alu 4873 NM_182751 55388 Hs.198363 NM_018518 HPRD:11297 MCM10 CNA43|DNA43 minichromosome maintenance complex component 10 protein-coding 0.022785 0.510101 20(AGGGCTGGGC,-,0.00) 256(TCGTGCCA,+,0.00) 228(GGGAGGTGAAGG,+,0.00) 190(CTACTCGG,+,0.00) 120 chr10 24756978 24757177 + 0 NA intron (NM_001282770, intron 1 of 11) intron (NM_001282770, intron 1 of 11) 1643 NM_001282770 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 0.005025 0.415000 156 chr10 81368227 81368413 + 0 NA Intergenic Intergenic -2375 NM_001164647 653509 Hs.535295 NM_005411 ENSG00000122852 SFTPA1 COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 surfactant protein A1 protein-coding 0.010753 0.518717 9(AGGTGGCT,+,0.00) 23(GGGCGCCCAAGG,+,0.00) 134 chr17 72200784 72200969 + 0 NA intron (NM_001035258, intron 3 of 4) AluSx|SINE|Alu 1081 NM_001035258 6169 Hs.380953 NM_000999 HPRD:16048 RPL38 L38 ribosomal protein L38 protein-coding 0.027027 0.473118 40 chr1 161429411 161429757 + 0 NA Intergenic CpG -45621 NM_021642 2212 Hs.352642 NM_021642 HPRD:00906 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding 0.046243 0.596542 -10(TGGACGCC,+,0.00) 23(CGTCGCTG,+,0.00) 20(GTCCGTCG,-,0.00) 212(GGGTTTTG,-,0.00) 75 chr3 190228233 190228421 + 0 NA Intergenic L2a|LINE|L2 -3513 NM_001167928 3556 Hs.478673 NM_002182 HPRD:04021 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 0.005319 0.449735 47(GGAAGCAGAAGG,+,0.00) 83 chr20 2795528 2795857 + 0 NA promoter-TSS (NM_080739) promoter-TSS (NM_080739) 35 NM_080739 128653 Hs.352187 NM_080739 HPRD:12748 C20orf141 dJ860F19.4 chromosome 20 open reading frame 141 protein-coding 0.018237 0.615152 60(GGGGGAGGGGGA,-,0.00) 192 chr15 72412854 72413043 + 0 NA intron (NM_145204, intron 1 of 1) Charlie4a|DNA|hAT-Charlie 2317 NM_145204 123228 Hs.513002 NM_145204 HPRD:09784 SENP8 DEN1|NEDP1|PRSC2 SUMO/sentrin specific peptidase family member 8 protein-coding 0.005291 0.268421 -64(TTTACCCA,-,0.00) 59 chr16 32158849 32159197 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR 40411 NR_109773 100289574 Hs.531536 NR_109773 ENSG00000230267 HERC2P4 D16F37S5 hect domain and RLD 2 pseudogene 4 pseudo 0.011494 0.481375 -63(TCATGCCG,+,0.00) 215 chr1 1165339 1165613 + 0 NA intron (NM_016176, intron 1 of 6) L2|LINE|L2 1971 NM_016547 51150 Hs.42806 NM_016176 HPRD:13113 SDF4 Cab45|SDF-4 stromal cell derived factor 4 protein-coding 0.058394 0.621818 -58(CCGTCCGA,+,0.00) -63(TCCTGCCG,+,0.00) -23(GGGCTCACAGGG,-,0.00) -56(GTCCGAGG,-,0.00) 106(CCCGCCATGTCA,+,0.00) 177 chr1 235529074 235529432 + 0 NA Intergenic Charlie4z|DNA|hAT-Charlie -1422 NM_001287802 6905 Hs.744998 NM_003193 HPRD:05381 TBCE HRD|KCS|KCS1|pac2 tubulin folding cofactor E protein-coding 0.011173 0.415042 -25(CTCGGCCTCC,-,0.00) 150 chr14 50705376 50705607 + 0 NA Intergenic Intergenic -7392 NM_006939 6655 Hs.291533 NM_006939 HPRD:03149 SOS2 - son of sevenless homolog 2 (Drosophila) protein-coding 0.017316 0.392241 155 chr11 104772744 104772952 + 0 NA intron (NR_034078, intron 4 of 4) L2a|LINE|L2 -3451 NR_034066 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 0.000000 0.392344 130 chr1 159900763 159900937 + 0 NA intron (NM_020789, intron 13 of 20) intron (NM_020789, intron 13 of 20) -5518 NM_003564 8407 Hs.517168 NM_003564 HPRD:06864 TAGLN2 HA1756 transgelin 2 protein-coding 0.000000 0.548571 217 chr15 22043914 22044325 + 0 NA Intergenic Intergenic -27241 NR_024387 646243 Hs.720910 NR_024387 CXADRP2 - coxsackie virus and adenovirus receptor pseudogene 2 pseudo 0.007299 0.550971 -53(ATCCGCTT,-,0.00) 53 chr6_apd_hap1 2260075 2260302 + 0 NA Intergenic AluSx1|SINE|Alu -2936 NM_001010909 394263 Hs.448277 NM_001010909 HPRD:16665 MUC21 C6orf205|KMQK697|MUC-21|bCX31G15.2 mucin 21, cell surface associated protein-coding 0.035242 0.482456 88(CGCCCGGC,-,0.00) 55(CCGAGTAG,-,0.00) 245 chr2 152974702 152975038 + 0 NA 3' UTR (NM_005843, exon 14 of 14) 3' UTR (NM_005843, exon 14 of 14) -19277 NM_000726 785 Hs.120725 NM_000726 HPRD:09057 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium channel, voltage-dependent, beta 4 subunit protein-coding 0.008929 0.293769 239 chr1 150933646 150934157 + 0 NA intron (NM_001145415, intron 16 of 21) AluSz|SINE|Alu 13578 NM_022075 29956 Hs.744017 NM_013384 HPRD:06080 CERS2 L3|LASS2|SP260|TMSG1 ceramide synthase 2 protein-coding 0.019569 0.470703 140(GGAGGCCGAG,+,0.00) 237(GCCGGGCG,+,0.00) 210(CGTCTCTA,+,0.00) 122 chr14 26940950 26941307 + 0 NA intron (NM_006491, intron 4 of 4) intron (NM_006491, intron 4 of 4) 125832 NM_006491 4857 Hs.31588 NM_002515 HPRD:03693 NOVA1 Nova-1 neuro-oncological ventral antigen 1 protein-coding 0.000000 0.251397 143 chr18 47010438 47010615 + 0 NA intron (NM_001199356, intron 5 of 6) (TA)n|Simple_repeat|Simple_repeat 3118 NM_001035005 497661 Hs.603040 NM_001035005 C18orf32 - chromosome 18 open reading frame 32 protein-coding 0.011299 0.365169 -55(AGACACTT,-,0.00) 205 chrX 102525213 102526071 + 0 NA Intergenic MIRb|SINE|MIR 6155 NM_001012979 340543 Hs.403462 NM_001012979 HPRD:18502 TCEAL5 WEX4 transcription elongation factor A (SII)-like 5 protein-coding 0.012821 0.428405 5(GGAGGCCGAG,+,0.00) -35(GCCGGGCG,+,0.00) 697(AGGTTTTG,-,0.00) 158 chr3 12326773 12326946 + 0 NA Intergenic L1MB7|LINE|L1 -2490 NM_138712 5468 Hs.162646 NM_005037 HPRD:03288 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator-activated receptor gamma protein-coding 0.000000 0.408046 -98(CAAAACCC,+,0.00) 42 chr9 140444665 140444855 + 0 NA 5' UTR (NM_001098537, exon 1 of 35) 5' UTR (NM_001098537, exon 1 of 35) 261 NM_152286 375775 Hs.294147 NM_152286 HPRD:12933 PNPLA7 C9orf111|NTE-R1|NTEL1 patatin-like phospholipase domain containing 7 protein-coding 0.010526 0.460733 73(AAGTGTCT,+,0.00) -52(TCTACCCG,-,0.00) 22 chr8 32404675 32404849 + 0 NA promoter-TSS (NM_004495) promoter-TSS (NM_004495) -966 NM_013958 3084 Hs.453951 NM_004495 HPRD:00802 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 0.022989 0.480000 219 chr7 29521977 29522146 + 0 NA intron (NM_001039936, intron 1 of 6) intron (NM_001039936, intron 1 of 6) -1371 NM_001293081 1124 Hs.654611 NM_004067 HPRD:04173 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 0.005917 0.488235 46 chr2 241420384 241420584 + 0 NA exon (NM_001282781, exon 16 of 17) exon (NM_001282781, exon 16 of 17) -24367 NR_024014 100130449 Hs.655753 NR_024014 ENSG00000218416 PP14571 - uncharacterized LOC100130449 ncRNA 0.045000 0.611940 -38(AGGGCAGGGC,-,0.00) -97(AACTCGGTCC,-,0.00) 13 chr14 22977077 22977513 + 0 NA Intergenic Intergenic 80848 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 0.006881 0.368421 235 chr6_cox_hap2 57361 57854 + 0 NA Intergenic Intergenic 19709 NM_052923 114821 Hs.176980 NM_052923 HPRD:11720 ZBED9 Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3 zinc finger, BED-type containing 9 protein-coding 0.000000 0.368421 243(CAGTTTTG,-,0.00) 105 chr20 44659299 44659668 + 0 NA intron (NM_020708, intron 1 of 25) intron (NM_020708, intron 1 of 25) 1662 NM_020708 57468 Hs.21413 NM_020708 HPRD:09469 SLC12A5 KCC2 solute carrier family 12 (potassium/chloride transporter), member 5 protein-coding 0.040650 0.637838 174(CCCCCTCCCCCG,+,0.00) 235(CAGCGCCAGGCA,+,0.00) 49(CCCCCGCC,-,0.00) -90(GGGCTGAAAGAG,-,0.00),85(GGGCTGAGTGGT,-,0.00),123(CCCTCTCATCCA,+,0.00) 250(CGACGCGG,+,0.00) 6 chr3 39851847 39852055 + 0 NA intron (NR_104316, intron 1 of 16) intron (NR_104316, intron 1 of 16) 800 NM_001284424 25924 Hs.594535 NM_015460 HPRD:14796 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 0.048077 0.612440 70(AGCCGCCA,-,0.00) -17(GCGGGCTGCCTG,+,0.00) 85 chr7 20415955 20416265 + 0 NA intron (NM_002214, intron 3 of 13) intron (NM_002214, intron 3 of 13) -44725 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 0.003226 0.405145 -23(AAGTGGCT,+,0.00) -102(CACTCTAAGCCC,+,0.00) 185 chr12 132556411 132557028 + 0 NA intron (NM_015409, intron 51 of 52) FLAM_A|SINE|Alu -12109 NR_003290 347918 Hs.122115 NM_182613 HPRD:13413 EP400NL - EP400 N-terminal like pseudo 0.022690 0.459547 207(GGCCTCGA,-,0.00) -50(GTCCGAGG,-,0.00) 36 chr12 27488356 27488541 + 0 NA intron (NM_001248003, intron 1 of 14) intron (NM_001248003, intron 1 of 14) 2661 NM_001248002 56938 Hs.445447 NM_020183 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator-like 2 protein-coding 0.010811 0.403226 -100(AGGCCTCT,+,0.00) -89(GGGCAGCTTT,+,0.00) 3 chr19 39330920 39331519 + 0 NA intron (NM_001005335, intron 6 of 12) intron (NM_001005335, intron 6 of 12) -8722 NM_001398 1891 Hs.196176 NM_001398 HPRD:02825 ECH1 HPXEL enoyl CoA hydratase 1, peroxisomal protein-coding 0.026711 0.626667 213 chr10 105131347 105132084 + 0 NA intron (NM_006951, intron 1 of 10) AluSg|SINE|Alu 3991 NM_006951 6877 Hs.96103 NM_006951 HPRD:11876 TAF5 TAF2D|TAFII100 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa protein-coding 0.012212 0.432249 427(TAGAGACG,-,0.00) -102(CTGTTTTG,-,0.00),582(CGGTTTGG,-,0.00) 358(CCTTTGCCTCCC,-,0.00) 368(CCGAGTAG,-,0.00) 183 chr16 10855836 10856042 + 0 NA intron (NM_001278506, intron 8 of 9) intron (NM_001278506, intron 8 of 9) 18296 NM_002484 4682 Hs.81469 NM_002484 HPRD:02611 NUBP1 NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 0.033981 0.685990 -60(CCGGGAGAGAGG,-,0.00) 94 chr10 88704847 88705048 + 0 NA exon (NM_024756, exon 4 of 7) exon (NM_024756, exon 4 of 7) 12478 NM_024756 79812 Hs.524479 NM_024756 HPRD:10601 MMRN2 EMILIN-3|EMILIN3|ENDOGLYX-1 multimerin 2 protein-coding 0.004975 0.544554 146 chr9 104156951 104157296 + 0 NA intron (NM_019051, intron 1 of 1) L1MA4|LINE|L1 3796 NM_019051 54534 Hs.288224 NM_019051 HPRD:14768 MRPL50 MRP-L50 mitochondrial ribosomal protein L50 protein-coding 0.002899 0.381503 51 chrX 148557626 148557858 + 0 NA Intergenic AluJr|SINE|Alu 29142 NM_000202 3423 Hs.460960 NM_000202 HPRD:02402 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 0.008621 0.506438 8(CCGAGTAG,-,0.00) 9 chr1_gl000192_random 466682 466883 + 0 NA intron (NR_120328, intron 1 of 4) intron (NR_120328, intron 1 of 4) 1901 NR_120328 102724558 Hs.712738 NR_120328 LOC102724558 - uncharacterized LOC102724558 ncRNA 0.034826 0.445545 15(TCGCCCTCGTCG,+,0.00) 22(CGTCGGCC,+,0.00) 111 chr5 139909945 139910191 + 0 NA intron (NM_020690, intron 29 of 35) AluSz6|SINE|Alu -17183 NM_003732 8637 Hs.594084 NM_003732 HPRD:09149 EIF4EBP3 4E-BP3|4EBP3 eukaryotic translation initiation factor 4E binding protein 3 protein-coding 0.028455 0.465587 -67(TAGAGACG,-,0.00) -59(GGGTTTTG,-,0.00) -101(GCCACCATGCCC,+,0.00) 38 chr16 2251634 2252075 + 0 NA Intergenic AluSx3|SINE|Alu -3324 NM_022372 64223 Hs.29203 NM_022372 HPRD:17031 MLST8 GBL|GbetaL|LST8|POP3|WAT1 MTOR associated protein, LST8 homolog (S. cerevisiae) protein-coding 0.024943 0.529412 158(GGAGGCCGAG,+,0.00) 63(GGCGTAGA,-,0.00) 97(GGGCTCAAAGGG,-,0.00) 164(CGAGGCGG,+,0.00) 161(GGCCGAGGCGGC,-,0.00) 4 chr1 149871671 149872025 + 0 NA exon (NM_016074, exon 2 of 2) exon (NM_016074, exon 2 of 2) 693 NM_016074 51027 Hs.13880 NM_016074 HPRD:13036 BOLA1 - bolA family member 1 protein-coding 0.079096 0.673239 -75(TCGGTCCG,-,0.00) 168(CCCCCGCC,-,0.00) -84(CCGGGGCCATCG,+,0.00) -11(GCTTCGCAAC,-,0.00) 34 chr5 121498481 121499013 + 0 NA intron (NM_001195535, intron 1 of 2) MIRb|SINE|MIR 2876 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 0.000000 0.431520 258(CAGCTTCTCCCT,-,0.00) 169 chrX 54469610 54469906 + 0 NA intron (NM_058163, intron 2 of 4) intron (NM_058163, intron 2 of 4) 2905 NM_058163 90121 Hs.522662 NM_058163 HPRD:06493 TSR2 DT1P1A10|WGG1 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) protein-coding 0.003378 0.444444 14(TTTACCCA,-,0.00) 164 chr8 24188436 24188673 + 0 NA intron (NM_014265, intron 11 of 22) intron (NM_014265, intron 11 of 22) 36974 NM_014265 10863 Hs.174030 NM_014265 HPRD:08391 ADAM28 ADAM 28|ADAM23|MDC-L|MDC-Lm|MDC-Ls|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 0.016878 0.415966 132 chr5 49687430 49687607 + 0 NA Intergenic L1PA7|LINE|L1 49716 NM_198449 133418 Hs.561411 NM_198449 HPRD:13271 EMB GP70 embigin protein-coding 0.000000 0.398876 43(CAAAACAG,+,0.00),65(CAAAACAG,+,0.00) 196 chr17 17397246 17397704 + 0 NA TTS (NM_018019) TTS (NM_018019) 2234 NM_016084 51655 Hs.25829 NM_016084 HPRD:08958 RASD1 AGS1|DEXRAS1|MGC:26290 RAS, dexamethasone-induced 1 protein-coding 0.015284 0.522876 327(GCCCAGCCCT,+,0.00) 191(CGGTTTTC,-,0.00) 171 chr10 134258020 134258255 + 0 NA promoter-TSS (NM_173541) promoter-TSS (NM_173541) -577 NM_173541 170393 Hs.375059 NM_173541 C10orf91 bA432J24.4 chromosome 10 open reading frame 91 protein-coding 0.012766 0.644068 -70(CGGGGAAGCAGG,-,0.00) -1(GAGGGCCAGCCT,+,0.00),65(GAGCACCAGCCT,+,0.00) 112(CCCCCAGGCCCC,-,0.00) 242 chr6 114252852 114253072 + 0 NA Intergenic SVA_B|Other|Other 27411 NR_027060 285759 Hs.376634 NM_173673 HPRD:08173 FLJ34503 - uncharacterized FLJ34503 ncRNA 0.059091 0.610860 47(CTCGGCCTCC,-,0.00) 60(AGTGCCGGGA,-,0.00)