Information for motif22


Reverse Opposite:

p-value:1e-30
log p-value:-6.932e+01
Information Content per bp:1.580
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets99.5 +/- 47.7bp
Average Position of motif in Background103.7 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TCTAGACAGAAT-
CAAATCCAGACATCACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCTAGACAGAAT
-CCAGACAG---

GFX(?)/Promoter/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCTAGACAGAAT
TCTCGCGAGAAT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCTAGACAGAAT
-BCAGACWA---

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TCTAGACAGAAT-
TACTGGAAAAAAAA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCTAGACAGAAT
-CCAGACRSVB-

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCTAGACAGAAT--
ATTTGCATACAATGG

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCTAGACAGAAT-----
--CTCACACAATGGCGC

MA0157.1_FOXO3/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TCTAGACAGAAT
TGTAAACA----

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TCTAGACAGAAT-----
TCACGGAACAATAGGTG