Information for motif3


Reverse Opposite:

p-value:1e-50
log p-value:-1.155e+02
Information Content per bp:1.888
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.8 +/- 56.3bp
Average Position of motif in Background166.2 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.56
Offset:7
Orientation:forward strand
Alignment:TCTGGTGCAGCC
-------CAGCC

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:TCTGGTGCAGCC--
------BCAGACWA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TCTGGTGCAGCC
VBSYGTCTGG-------

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------TCTGGTGCAGCC
NNTNNTGTCTGGNNTNG--

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TCTGGTGCAGCC
CTGTCTGG-------

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TCTGGTGCAGCC
-MTGATGCAAT-

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TCTGGTGCAGCC
NATGTTGCAA--

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TCTGGTGCAGCC
GGTCTGGCAT----

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TCTGGTGCAGCC
-ATGATGCAAT-

POL011.1_XCPE1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TCTGGTGCAGCC-
---GGTCCCGCCC