Information for motif4


Reverse Opposite:

p-value:1e-14
log p-value:-3.375e+01
Information Content per bp:1.866
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets89.4 +/- 65.0bp
Average Position of motif in Background100.2 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GACAATAAGAGC
GACAATGNN---

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GACAATAAGAGC
TCACGGAACAATAGGTG-

PB0072.1_Sox5_1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GACAATAAGAGC
TTTAGAACAATAAAAT-

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GACAATAAGAGC-
CAAACAACAACACCT

PB0172.1_Sox1_2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GACAATAAGAGC
NNNTAACAATTATAN-

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GACAATAAGAGC-
NNTNNACAATGGGANNN

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GACAATAAGAGC
--AAATCACTGC

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GACAATAAGAGC
AACAAT------

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GACAATAAGAGC---
CATACAATACGAAATAA

MA0483.1_Gfi1b/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GACAATAAGAGC-
--AAATCACAGCA