Information for motif42


Reverse Opposite:

p-value:1e-8
log p-value:-2.005e+01
Information Content per bp:1.633
Number of Target Sequences with motif402.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif387.3
Percentage of Background Sequences with motif2.34%
Average Position of motif in Targets102.7 +/- 54.2bp
Average Position of motif in Background101.9 +/- 58.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0044.1_Mtf1_1/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TSCRCKAG----
NNTTTGCACACGGCCC

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TSCRCKAG----
ANATTTTACGAGNNNN

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:3
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------TSCRCKAG--------
ACCGCCNTCCACGTGTANNGACA

PB0200.1_Zfp187_2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TSCRCKAG-----
NNAGGGACAAGGGCNC

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TSCRCKAG-
-GGACGTGC

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TSCRCKAG----
NAATTTTACGAGNTNN

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TSCRCKAG--
--CACGTGGN

n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TSCRCKAG---
-CCACGTGGNN

MA0527.1_ZBTB33/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TSCRCKAG--
NAGNTCTCGCGAGAN

c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TSCRCKAG---
-CCACGTGGNN