Information for motif19


Reverse Opposite:

p-value:1e-29
log p-value:-6.823e+01
Information Content per bp:1.659
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets100.5 +/- 57.4bp
Average Position of motif in Background150.7 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-ACAGGTACTTAA
CACAGN-------

PH0105.1_Meis3/Jaspar

Match Rank:2
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------ACAGGTACTTAA
GTATTGACAGGTNNTT--

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------ACAGGTACTTAA
NNATTGACAGGTGCTT--

PH0102.1_Meis1/Jaspar

Match Rank:4
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------ACAGGTACTTAA
NTATTGACAGCTNNTT--

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------ACAGGTACTTAA
NTATTGACAGGTNNTN--

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------ACAGGTACTTAA
GTATTGACAGCTNNTT--

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ACAGGTACTTAA
AACAGGAAGT---

PH0140.1_Pknox1/Jaspar

Match Rank:8
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------ACAGGTACTTAA
GGATTGACAGGTCNTT--

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------ACAGGTACTTAA
ANTNTTACATGTATNTA-

PH0087.1_Irx6/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------ACAGGTACTTAA
ANTTNTACATGTANTTN-