Information for motif21


Reverse Opposite:

p-value:1e-18
log p-value:-4.194e+01
Information Content per bp:1.698
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.8 +/- 51.4bp
Average Position of motif in Background85.8 +/- 43.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CTCCTAGGTTTA
----NGGGATTA

MA0009.1_T/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTCCTAGGTTTA--
---CTAGGTGTGAA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CTCCTAGGTTTA--
------GGATTAGC

MA0031.1_FOXD1/Jaspar

Match Rank:4
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CTCCTAGGTTTA-
-----ATGTTTAC

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CTCCTAGGTTTA----
NNNNTTTGTTTACNNT

MA0481.1_FOXP1/Jaspar

Match Rank:6
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CTCCTAGGTTTA------
---CTTTGTTTACTTTTN

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CTCCTAGGTTTA
CNGTCCTCCC-------

MA0497.1_MEF2C/Jaspar

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CTCCTAGGTTTA----
-TTCTATTTTTAGNNN

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAGGTTTA
GCTCCG-------

PB0161.1_Rxra_2/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-CTCCTAGGTTTA---
TCGCGAAGGTTGTACT