Information for motif4


Reverse Opposite:

p-value:1e-48
log p-value:-1.120e+02
Information Content per bp:1.838
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets102.5 +/- 56.6bp
Average Position of motif in Background68.6 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0009.1_E2F3_1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---GCTCGCCATT--
ANCGCGCGCCCTTNN

PB0008.1_E2F2_1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GCTCGCCATT--
NTCGCGCGCCTTNNN

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCTCGCCATT---
TACGCCCCGCCACTCTG

PB0108.1_Atf1_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCTCGCCATT-
NTTATTCGTCATNC

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCTCGCCATT
AGCGCGCC---

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCTCGCCATT---
---GGCCATTAAC

MA0095.2_YY1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCTCGCCATT---
-GCNGCCATCTTG

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCTCGCCATT
TBGCACGCAA--

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCTCGCCATT
NGCTN------

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCTCGCCATT---
-GCCGCCATCTTG