Information for motif35


Reverse Opposite:

p-value:1e-56
log p-value:-1.298e+02
Information Content per bp:1.935
Number of Target Sequences with motif390.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif18.9
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets101.2 +/- 55.7bp
Average Position of motif in Background105.5 +/- 54.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGTACTCA-
AAGCACTTAA

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CGTACTCA--
--TACTNNNN

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CGTACTCA----
TACTAAGTACTTAAATG

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:4
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CGTACTCA---
ACTCCAAGTACTTGGAA

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CGTACTCA----
CGAACAGTGCTCACTAT

MA0124.1_NKX3-1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGTACTCA
-ATACTTA

PB0094.1_Zfp128_1/Jaspar

Match Rank:7
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CGTACTCA--
TCTTTGGCGTACCCTAA

PH0116.1_Nkx2-9/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CGTACTCA----
TTTTAAGTACTTAAATT

PH0112.1_Nkx2-3/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CGTACTCA---
CNTTAAGTACTTAANG

MA0122.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGTACTCA-
NCCACTTAN