Information for motif5


Reverse Opposite:

p-value:1e-27
log p-value:-6.340e+01
Information Content per bp:1.782
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets101.0 +/- 63.5bp
Average Position of motif in Background129.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CGGGCGCCCGGC-
TTGGGGGCGCCCCTAG

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGGGCGCCCGGC
AGCGCGCC----

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CGGGCGCCCGGC
---GCTCCG---

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGGGCGCCCGGC-
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGGGCGCCCGGC-
ANCGCGCGCCCTTNN

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGGGCGCCCGGC-
NNNNTTGGCGCCGANNN

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CGGGCGCCCGGC
CNGTCCTCCC---

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CGGGCGCCCGGC----
----GGCCCCGCCCCC

PB0095.1_Zfp161_1/Jaspar

Match Rank:9
Score:0.52
Offset:-7
Orientation:reverse strand
Alignment:-------CGGGCGCCCGGC
NCANGCGCGCGCGCCA---

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CGGGCGCCCGGC---
CTTGGCANNNTGCCAA