Information for motif1


Reverse Opposite:

p-value:1e-59
log p-value:-1.368e+02
Information Content per bp:1.804
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets108.2 +/- 52.3bp
Average Position of motif in Background96.0 +/- 70.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGTCAGGCAGHA
TGTCTGDCACCT

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGTCAGGCAGHA
GGTCTGGCAT--

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGTCAGGCAGHA
CTGTCTGTCACCT

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGTCAGGCAGHA
--TGAGTCAGCA

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTCAGGCAGHA-
SCAGYCADGCATGAC

MA0067.1_Pax2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGTCAGGCAGHA
AGTCACGC----

bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGTCAGGCAGHA----
WNAGTCADAVTGAAACTN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGTCAGGCAGHA
CTGTCTGG-----

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGTCAGGCAGHA
VBSYGTCTGG-----

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGTCAGGCAGHA
--ACAGGAAGTG