Information for motif20


Reverse Opposite:

p-value:1e-18
log p-value:-4.330e+01
Information Content per bp:1.699
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets113.8 +/- 59.0bp
Average Position of motif in Background94.3 +/- 54.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0515.1_Sox6/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGACTATGGTC
AAAACAATGG--

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGACTATGGTC--
--NNHTGTGGTTWN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAGACTATGGTC--
----CTGTGGTTTN

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGACTATGGTC-
CTCACACAATGGCGC

MA0143.3_Sox2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGACTATGGTC
--AACAAAGG--

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGACTATGGTC-
---GCTGTGGTTT

MA0002.2_RUNX1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGACTATGGTC-
--GTCTGTGGTTT

MA0077.1_SOX9/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAGACTATGGTC
-GAACAATGG--

MA0511.1_RUNX2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGACTATGGTC--
GGGGTTTGTGGTTTG

MA0078.1_Sox17/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGACTATGGTC
--GACAATGNN-