Information for motif2


Reverse Opposite:

p-value:1e-52
log p-value:-1.207e+02
Information Content per bp:1.873
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets95.9 +/- 58.8bp
Average Position of motif in Background99.8 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TAACCTTCATCT
TGACCTTGACCT

MA0598.1_EHF/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TAACCTTCATCT
---CCTTCCTG-

MA0071.1_RORA_1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TAACCTTCATCT
TGACCTTGAT--

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TAACCTTCATCT
NTGACCTTGA---

MA0505.1_Nr5a2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TAACCTTCATCT-
GCTGACCTTGAACTN

MA0141.2_Esrrb/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TAACCTTCATCT
TGACCTTGANNN

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TAACCTTCATCT
TGACCTTTNCNT

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TAACCTTCATCT---
GACCACATTCATACAAT

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TAACCTTCATCT----
--ACATTCATGACACG

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TAACCTTCATCT
NNNNATGACCTTGANTN