Information for motif25


Reverse Opposite:

p-value:1e-16
log p-value:-3.878e+01
Information Content per bp:1.530
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets103.3 +/- 57.9bp
Average Position of motif in Background21.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGGGCGAG-
ATGCCCGGGCATGT

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGCCAGGGCGAG
NGTTGCCATGGCAA-

MA0155.1_INSM1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGCCAGGGCGAG
TGTCAGGGGGCG

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGGCGAG
TTGCCAAG-----

MA0509.1_Rfx1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAGGGCGAG
GTTGCCATGGNAAC

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGCCAGGGCGAG
GGTTGCCATGGCAA-

MA0600.1_RFX2/Jaspar

Match Rank:7
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------TGCCAGGGCGAG
NNNCNGTTGCCATGGNAAC

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGCCAGGGCGAG
CGGTTGCCATGGCAAC

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGGGCGAG-
GTTGCCATGGCAACM

MA0510.1_RFX5/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCAGGGCGAG
NCTGTTGCCAGGGAG--