Information for motif29


Reverse Opposite:

p-value:1e-14
log p-value:-3.376e+01
Information Content per bp:1.837
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets94.1 +/- 57.8bp
Average Position of motif in Background82.3 +/- 42.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0041.1_Hmx1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CGAGCTATTA------
ACAAGCAATTAATGAAT

MA0125.1_Nobox/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CGAGCTATTA
--ACCAATTA

PH0043.1_Hmx3/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CGAGCTATTA------
ACAAGCAATTAAAGAAT

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CGAGCTATTA-
---BCMATTAG

MA0063.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:CGAGCTATTA-
----CAATTAA

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CGAGCTATTA--
--GGCCATTAAC

PB0135.1_Hoxa3_2/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGAGCTATTA---
AAAAACCATTAAGG

PH0042.1_Hmx2/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CGAGCTATTA------
ACAAGCAATTAAAGAAT

PH0024.1_Dlx5/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGAGCTATTA------
GGGGTAATTAGCTCTG

PH0063.1_Hoxb8/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGAGCTATTA-----
ACCGGCAATTAATAAA