Information for motif3


Reverse Opposite:

p-value:1e-32
log p-value:-7.411e+01
Information Content per bp:1.820
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets108.2 +/- 57.1bp
Average Position of motif in Background84.6 +/- 35.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GKTGTATGTTAC
----TATGTNTA

MA0025.1_NFIL3/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GKTGTATGTTAC--
---TTATGTAACAT

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GKTGTATGTTAC----
-NCNTTTGTTATTTNN

POL007.1_BREd/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GKTGTATGTTAC
---GTTTGTT--

MA0042.1_FOXI1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GKTGTATGTTAC
GGATGTTTGTTT-

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GKTGTATGTTAC-
CCATTGTATGCAAAT

PB0148.1_Mtf1_2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GKTGTATGTTAC--
NNTTTTTCTTATNT

PB0187.1_Tcf7_2/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GKTGTATGTTAC----
-NNNTTTNTAATACNG

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GKTGTATGTTAC------
--TNAATTTTATTACCTN

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GKTGTATGTTAC
---TTATGCAAT