Information for motif12


Reverse Opposite:

p-value:1e-23
log p-value:-5.456e+01
Information Content per bp:1.437
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets100.4 +/- 47.7bp
Average Position of motif in Background71.2 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0077.1_SOX9/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AACCATTGATAY
--CCATTGTTC-

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AACCATTGATAY
ATAAACAATTAAACA

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AACCATTGATAY
ACTAGCCAATCA---

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AACCATTGATAY
--CCTTTGATGT

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AACCATTGATAY-
NNCATTCATTCATNNN

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AACCATTGATAY
--CCTTTGAWGT

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AACCATTGATAY
TAGTGAACAATAGATTT

PB0074.1_Sox8_1/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AACCATTGATAY
TNNAGAACAATANATNN

MA0143.3_Sox2/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AACCATTGATAY
--CCTTTGTT--

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AACCATTGATAY---
AATCCCTTTGATCTATC