Information for motif11


Reverse Opposite:

p-value:1e-23
log p-value:-5.458e+01
Information Content per bp:1.858
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets99.1 +/- 55.3bp
Average Position of motif in Background97.4 +/- 43.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0101.1_REL/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GAAACCCCGC
GGAAANCCCC-

MA0107.1_RELA/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAAACCCCGC
GGAAATTCCC-

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAAACCCCGC
GGAAATCCCC-

NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GAAACCCCGC
GGGGGAATCCCC--

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GAAACCCCGC
ACTGAAACCA---

PB0107.1_Ascl2_2/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAAACCCCGC------
CTATCCCCGCCCTATT

MA0105.3_NFKB1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAAACCCCGC
GGGAAATTCCC-

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAAACCCCGC-------
TACGCCCCGCCACTCTG

PB0039.1_Klf7_1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAAACCCCGC------
TCGACCCCGCCCCTAT

POL003.1_GC-box/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAAACCCCGC-----
-NAGCCCCGCCCCCN