Information for motif23


Reverse Opposite:

p-value:1e-29
log p-value:-6.879e+01
Information Content per bp:1.712
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets95.1 +/- 49.2bp
Average Position of motif in Background114.8 +/- 46.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAATAATCCATG---
-NNTAATCCNGNCNN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAATAATCCATG
---TAATCCCN-

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAATAATCCATG--
GNNNATTAATCCCTNCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAATAATCCATG
-GCTAATCC---

PH0126.1_Obox6/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAATAATCCATG---
CNATAATCCGNTTNT

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAATAATCCATG--
GANNATTAATCCCTNNN

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GAATAATCCATG-
TNNAGAACAATANATNN

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAATAATCCATG
-AATAATT----

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAATAATCCATG-
---TAATCAATTA

PH0025.1_Dmbx1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAATAATCCATG---
NNNATTAATCCGNTTNA