Information for motif17


Reverse Opposite:

p-value:1e-20
log p-value:-4.686e+01
Information Content per bp:1.862
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets102.7 +/- 55.4bp
Average Position of motif in Background108.1 +/- 42.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCAAGCGTTC
-CAAGCTT--

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGCGTTC
TGCCAA------

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCAAGCGTTC
ACTAGCCAATCA---

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCAAGCGTTC
-CACGCA---

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCAAGCGTTC
--CAGCC---

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCAAGCGTTC
AGCCAATCGG--

PB0046.1_Mybl1_1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCAAGCGTTC----
TTGAAAACCGTTAATTT

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCAAGCGTTC-
ATTTCCCAGVAKSCY

PB0045.1_Myb_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCAAGCGTTC----
ATGGAAACCGTTATTTT

MA0133.1_BRCA1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCAAGCGTTC
ACAACAC---