Information for motif7


Reverse Opposite:

p-value:1e-85
log p-value:-1.980e+02
Information Content per bp:1.530
Number of Target Sequences with motif116.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets101.7 +/- 54.7bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AAGGAGACAAAG----
AAACAGACAAAGGAAT

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AAGGAGACAAAG-
---AAAACAAAGG

MA0515.1_Sox6/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AAGGAGACAAAG-
---AAAACAATGG

MA0442.1_SOX10/Jaspar

Match Rank:4
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:AAGGAGACAAAG
------ACAAAG

MA0481.1_FOXP1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAGGAGACAAAG
CAAAAGTAAACAAAG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:AAGGAGACAAAG-
-----RACAAWGG

MA0143.3_Sox2/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AAGGAGACAAAG-
-----AACAAAGG

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGGAGACAAAG-----
AGAAGAACAAAGGACTA

PB0015.1_Foxa2_1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAGGAGACAAAG--
AAAAAGTAAACAAAGAC

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAGGAGACAAAG----
-CTCACACAATGGCGC