Information for motif53


Reverse Opposite:

p-value:1e-5
log p-value:-1.265e+01
Information Content per bp:1.530
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif11.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets88.8 +/- 45.4bp
Average Position of motif in Background49.6 +/- 48.7bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AACGGGAC
NHAACBGYYV

PB0141.1_Isgf3g_2/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AACGGGAC--
GCAAAACATTACTA

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------AACGGGAC--
NNTNNACAATGGGANNN

E-box(HLH)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AACGGGAC---
TCACGTGACCGG

PB0140.1_Irf6_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AACGGGAC----
NNNACCGAGAGTNNN

MA0067.1_Pax2/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AACGGGAC-
-NCGTGACN

MA0093.2_USF1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AACGGGAC-
GCCACGTGACC

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AACGGGAC--
ANCAGGATGT

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AACGGGAC-
GGGCGGGACC

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AACGGGAC--
AACAGGAAGT