Information for motif16


Reverse Opposite:

p-value:1e-71
log p-value:-1.640e+02
Information Content per bp:1.530
Number of Target Sequences with motif135.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets103.3 +/- 57.4bp
Average Position of motif in Background169.9 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0038.1_Gfi1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---GGATTTAG
CNGTGATTTN-

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGATTTAG----
TGAAGGGATTAATCATC

PH0025.1_Dmbx1/Jaspar

Match Rank:3
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GGATTTAG---
TGAACCGGATTAATGAA

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GGATTTAG----
TGTAGGGATTAATTGTC

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGATTTAG
NGGGATTA--

MA0485.1_Hoxc9/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGATTTAG----
NTGATTTATGGCC

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GGATTTAG----
AGAGGGGATTAATTTAT

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GGATTTAG---
TTAGAGGGATTAACAAT

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GGATTTAG----
NNAAGGGATTAACGANT

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGATTTAG----
TGATTTATGGCC