Information for motif29


Reverse Opposite:

p-value:1e-61
log p-value:-1.416e+02
Information Content per bp:1.530
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets102.1 +/- 55.1bp
Average Position of motif in Background123.6 +/- 39.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TTGGATCCCG---
CTACTTGGATACGGAAT

POL011.1_XCPE1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TTGGATCCCG---
---GGTCCCGCCC

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTGGATCCCG----
NNANTTGACCCCTNNNN

PB0158.1_Rfx3_2/Jaspar

Match Rank:4
Score:0.58
Offset:-8
Orientation:forward strand
Alignment:--------TTGGATCCCG-----
ACTGACCCTTGGTTACCACAAAG

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TTGGATCCCG--
--ACATCCTGNT

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TTGGATCCCG--
--NYTTCCCGCC

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TTGGATCCCG
ATTGCATCAK-

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------TTGGATCCCG-
ATTTCCTTTGATCTATA

MA0161.1_NFIC/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTGGATCCCG
TTGGCA----

CHR/Cell-Cycle-Exp/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTGGATCCCG
TTTGAAACCG-