Information for motif39


Reverse Opposite:

p-value:1e-53
log p-value:-1.241e+02
Information Content per bp:1.530
Number of Target Sequences with motif115.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets99.7 +/- 55.7bp
Average Position of motif in Background91.6 +/- 56.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAAGCAACAGCA
SCCTAGCAACAG--

Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAAGCAACAGCA--------
GAAGTANCACGAATNMRAGT

MA0133.1_BRCA1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAAGCAACAGCA
---ACAACAC--

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAAGCAACAGCA---
CAAACAACAACACCT

MA0510.1_RFX5/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAAGCAACAGCA
CTCCCTGGCAACAGC-

MA0051.1_IRF2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAAGCAACAGCA----
GGAAAGCGAAACCAAAAC

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAAGCAACAGCA
ADGGYAGYAGCATCT

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AAAGCAACAGCA
CCGCATAGCAACGGA-

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAAGCAACAGCA
GAAASYGAAASY-

MA0002.2_RUNX1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AAAGCAACAGCA
-AAACCACAGAN