Information for motif40


Reverse Opposite:

p-value:1e-53
log p-value:-1.241e+02
Information Content per bp:1.720
Number of Target Sequences with motif115.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets98.6 +/- 55.1bp
Average Position of motif in Background144.6 +/- 37.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.78
Offset:3
Orientation:forward strand
Alignment:TCGKAGCG
---CAGCC

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TCGKAGCG
-CGGAGC-

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TCGKAGCG---
NNNTTAGGTAGCNTNT

PB0155.1_Osr2_2/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TCGKAGCG---
NNTGTAGGTAGCANNT

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCGKAGCG-----
CCACACAGCAGGAGA

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCGKAGCG
-NGAAGC-

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCGKAGCG-----
GAGCACAGCAGGACA

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCGKAGCG-----
CCACACAGCAGGAGA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCGKAGCG--
----TGCGTG

PH0157.1_Rhox11_1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TCGKAGCG----
TCNNTTTACAGCGNNNT