Information for motif42


Reverse Opposite:

p-value:1e-52
log p-value:-1.203e+02
Information Content per bp:1.530
Number of Target Sequences with motif113.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets96.8 +/- 56.5bp
Average Position of motif in Background90.4 +/- 39.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---TGTTACGAGA---
ANATTTTACGAGNNNN

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TGTTACGAGA---
NAATTTTACGAGNTNN

PB0032.1_IRC900814_1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTTACGAGA------
ATTTACGACAAATAGC

MA0043.1_HLF/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGTTACGAGA--
GGTTACGCAATA

PH0076.1_Hoxd11/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGTTACGAGA---
ANNATTTTACGACNTNA

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGTTACGAGA---
NNNATTTTACGACNNTN

PH0065.1_Hoxc10/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGTTACGAGA---
ANNTTTTACGACNTNN

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGTTACGAGA---
NNGTTTTACGACTTTA

PH0066.1_Hoxc11/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGTTACGAGA---
NNNTTTTACGACNTTN

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TGTTACGAGA-
GTNTTGTTGTGANNT