Information for motif43


Reverse Opposite:

p-value:1e-52
log p-value:-1.203e+02
Information Content per bp:1.969
Number of Target Sequences with motif113.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets91.8 +/- 53.3bp
Average Position of motif in Background127.5 +/- 14.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAGCTCAGAGCT--
GAGGTCAAAGGTCA

MA0504.1_NR2C2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGCTCAGAGCT--
AGGGGTCAGAGGTCA

MA0512.1_Rxra/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCTCAGAGCT
CAAAGGTCAGA---

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGCTCAGAGCT
-ACATCAAAGG-

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGCTCAGAGCT
-ACWTCAAAGG-

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGCTCAGAGCT
CAAAGGTCAG----

MA0523.1_TCF7L2/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGCTCAGAGCT-
AAAGATCAAAGGAA

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAGCTCAGAGCT----
AAAGGTCAAAGGTCAAC

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAGCTCAGAGCT
-----CGGAGC-

PB0021.1_Gata3_1/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GAGCTCAGAGCT----
TTTTTAGAGATAAGAAATAAAG